Citrus Sinensis ID: 001363
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1092 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WV90 | 1120 | Topless-related protein 1 | yes | no | 0.963 | 0.939 | 0.544 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.984 | 0.950 | 0.538 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.971 | 0.934 | 0.498 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.959 | 0.926 | 0.466 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.965 | 0.951 | 0.466 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.262 | 0.211 | 0.274 | 9e-19 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.492 | 0.352 | 0.220 | 8e-15 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.467 | 0.405 | 0.220 | 2e-13 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.459 | 0.298 | 0.225 | 1e-11 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.231 | 0.340 | 0.254 | 2e-11 |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function desciption |
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Score = 1187 bits (3071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/1119 (54%), Positives = 778/1119 (69%), Gaps = 67/1119 (5%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD KA++IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C+L G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
Q T SP + W S S + AVS ++L P+ +A +D P D
Sbjct: 240 QPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPSGD 299
Query: 268 SDILSEKS-PVRILNEQASTV-----TYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321
SD +S+++ P+ I +E + V T+PG ++ + F++ D
Sbjct: 300 SDHVSKRTRPMGISDEVSLGVNMLPMTFPG-----------QAHGHNQTFKAP-----DD 343
Query: 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIG 381
PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L + FKVWD+
Sbjct: 344 LPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLS 402
Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHV
Sbjct: 403 KCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHV 462
Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501
G VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI F
Sbjct: 463 GGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQF 522
Query: 502 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561
IFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+GESF+VEWN
Sbjct: 523 IFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWN 582
Query: 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621
ESEGA+KRTYQG S+ VV FDT K++ LAAGDD IK WDM+ +QLLT IDA GG
Sbjct: 583 ESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGG 640
Query: 622 LPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTG 680
L +PRI FNK G+LLAV AN+N IK++ + + LS K ++N I V
Sbjct: 641 LQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVER 700
Query: 681 AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKI 737
+N D + DVKP I+ E+ +KS+V K PS+C+SL LP ++ KI
Sbjct: 701 PASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKI 760
Query: 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797
SRL + N G AI ALASN +HL+W+W RND + +AT +PP+ +QP G M ND
Sbjct: 761 SRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASG-ILMTNDVA 819
Query: 798 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857
++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN
Sbjct: 820 ETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879
Query: 858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917
+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DG
Sbjct: 880 IIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDG 939
Query: 918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI- 976
W Q + LQ P G T + S+T +QFH+DQ FL+VHET LAIYE +L C+KQW P+
Sbjct: 940 WEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW-PVR 998
Query: 977 -SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035
S+ PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S +V+P
Sbjct: 999 ESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLV 1058
Query: 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1059 IAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1179 bits (3050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/1143 (53%), Positives = 787/1143 (68%), Gaps = 68/1143 (5%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD KA++IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
Q T SP + W S S + AVS A++L P+ A ++D P D
Sbjct: 240 QPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSAD 299
Query: 268 SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
S+ +S+++ P+ I +E V +S +S ++ F++ D PKTV
Sbjct: 300 SEHVSKRTRPMGISDEVNLGVNMLPMS------FSGQAHGHSPAFKAP-----DDLPKTV 348
Query: 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 386
A+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L + FKVWD+ CSM
Sbjct: 349 ARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMP 407
Query: 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
+ ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND
Sbjct: 408 LQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVND 467
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
++FS P KQ+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS +
Sbjct: 468 ISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTA 527
Query: 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566
+DGKIKAWLYD++G+RVDYDAPG CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA
Sbjct: 528 LDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGA 587
Query: 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ VQLLT ID GGL +P
Sbjct: 588 VKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASP 645
Query: 627 RICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPI-----STVTG 680
RI FNK G+LLAV NEN IKI+ + + +S K ++N I + T
Sbjct: 646 RIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATS 705
Query: 681 AGIANGSVSV------NEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSK 731
AG A+ S +V N D + DVKP I+ E+ +KS++ K + PS+C+SL LP
Sbjct: 706 AGHADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPEN 765
Query: 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791
++ KISRL + N G AI ALASN +HL+W+W RN+ + +AT +PP+ +QP G
Sbjct: 766 LRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASG-IL 824
Query: 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF 851
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF
Sbjct: 825 MTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 884
Query: 852 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911
+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+
Sbjct: 885 HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944
Query: 912 VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK 971
VW+ DGW Q + L P G APS+T +QFH+DQ FL+VHET LAIYE +L C+K
Sbjct: 945 VWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMK 1004
Query: 972 QWFPISSV-PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1030
QW S+ PI+ ATFSCD ++V+ SF+D T+ + ++NL ++CR+ +AYL + S +
Sbjct: 1005 QWAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN 1064
Query: 1031 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDR 1088
V+P IAAHP +P FAVGL++G V++ EP E W V PP E PT+ S G
Sbjct: 1065 VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGAS 1124
Query: 1089 AMD 1091
A D
Sbjct: 1125 ASD 1127
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/1159 (49%), Positives = 747/1159 (64%), Gaps = 98/1159 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F ++ H LE+ES F+F+M++FED + G+W+DVE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD D AKA++IL K+LK F+ NEELFKE+ LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L + R++E LSKY GD SAR M+ ELK++IEANP+ + KL+FPS+K RLR LINQSL
Sbjct: 121 LTNFRENEQLSKY-GDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239
Query: 225 QTTQSPSSWNFSSSMLTDSA----VSFVALSLSDPTNKAVTM---DRPE----------- 266
Q T +P + + + M S VS + L P N AV+M +RP
Sbjct: 240 QPTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAP-NSAVSMLKRERPRSPPTNSLSMDY 298
Query: 267 ---DSD-ILSEKSPVRI------LNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
DS+ +L P I L VTYPG QS
Sbjct: 299 QTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPG--------------------QSHAH 338
Query: 317 TSFS--DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374
++S D PK V++ L +GS+ SMDFHPVQ T+LLVGTN+GD +W+V S +KL R+
Sbjct: 339 ATYSTDDLPKNVSRILSQGSAI-KSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRS 397
Query: 375 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
FKVWD+ C++ + +L + +VNRVVWSPDG LLGVAYSKHIV +Y+YHGG D R
Sbjct: 398 FKVWDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNH 457
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
LEIDAH GNVNDLAFS P +Q+ V+TCG+DKTIKVWDAVTG++ ++FEGH APVYS+CPH
Sbjct: 458 LEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPH 517
Query: 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
KENI FIFS +VDGKIKAWLYD++G+RVDYDAPG CT MAY A+G RLFSCGTSKEGE
Sbjct: 518 QKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGE 577
Query: 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
SF+VEWNESEGA+KRTY GL + SV VV FDT K++ L AGD+ +K WDM+ V LL+
Sbjct: 578 SFIVEWNESEGAVKRTYLGLGKR--SVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLS 635
Query: 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKL 670
+ A GGLP +P + NK GTLLAV +N IKIL E +S+ G+ S
Sbjct: 636 STAAEGGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPG 695
Query: 671 SV--NPI-------STVTGAGIANGSVS--------VNEDPKE--DVKPEISVEAENKSE 711
SV PI ++ TG ++ G S +N D + DVKP I+ +AE
Sbjct: 696 SVAKGPIVGTFGTPNSSTGMSLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKT 755
Query: 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 771
+ + S+ ++L LP + ++ +L Y N G AI ALA N H +W+W +++ L
Sbjct: 756 WKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLL 815
Query: 772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM 831
+A + VPP+L+QP G M NDT + N ++ VPCFALSKND+Y+ SASGG ISL+ +M
Sbjct: 816 GKANSNVPPQLWQPSSG-VLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMM 874
Query: 832 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891
TFKT+ T M P P ATSLAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH KRVTG
Sbjct: 875 TFKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTG 934
Query: 892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951
L FS+ LN+LVSSG D+Q+ VW +DGW Q + +Q P G + T +QFH+DQ
Sbjct: 935 LAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHV 994
Query: 952 LLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010
L+VH + LAIYEA +L +KQW P SS ++ A +SCD + ++ +F DG++SI A+ L
Sbjct: 995 LVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTL 1054
Query: 1011 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV- 1069
+++CRI +YL P+ VYP +AAHP +P QFAVGLT+G V+VIEP P W +
Sbjct: 1055 QLKCRIGPNSYL-PSNPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGIS 1113
Query: 1070 LPPDEIVGDQPTSTSEGDR 1088
PP+ G +S D+
Sbjct: 1114 APPENGAGPSVSSAPGSDQ 1132
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1005 bits (2599), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/1120 (46%), Positives = 724/1120 (64%), Gaps = 72/1120 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+ L G+W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M ELK++IEANP+ + KL FPS K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
NWQH C NP+PNPDI TLF+DH C ++ LP PS++
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFLDHSCSPSN---GARALTPVNLPVAAVARPSNFVPLGVHG 236
Query: 234 -NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGV 292
F S+ + +A +++P + S +++ SP + Q + + +P
Sbjct: 237 GPFQSNPAPAPNANALAGWMANPNPSSSV-----PSGVVA-ASPFPMQPSQVNELKHPRA 290
Query: 293 SLKNIPDYSPKSSLKKEMFQ----------------SFGETSFSDFPKTVAQTLIEGSSS 336
++ +S+ +++ + S S D P+ V T+ +GS
Sbjct: 291 PSNSLGLMDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV 350
Query: 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396
+SMDFHP HTLL VG + G+ LW+V S +K+ FK+W++ ACS++F+ ++V++P
Sbjct: 351 -ISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPS 409
Query: 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 456
+SV RV WSPDG+LLGV+++KH++ +YAY GSD RQ LEIDAHVG VNDLAF+ P KQ+
Sbjct: 410 ISVTRVAWSPDGNLLGVSFTKHLIHVYAYQ-GSDLRQHLEIDAHVGCVNDLAFAHPNKQM 468
Query: 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 516
V+TCGDDK IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLY
Sbjct: 469 CVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLY 527
Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
D++G+RVDYDAPG CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G
Sbjct: 528 DNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLG--F 585
Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636
+ S VV FDT +++ LA G+D+ IK W+M+ LLT ++A GGLP PR+ FNK+G L
Sbjct: 586 RKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNL 645
Query: 637 LAV---------IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687
LAV +AN + ++ L E+ S +A+ D K+S + +++ I
Sbjct: 646 LAVTTADNGFKILANTDGLRTLRAFEARSFEASKASID--MKVSTSAMASSISPAIGKIE 703
Query: 688 VSVNEDPKEDVKPEISVEAENKS----------EVEKPL----FARPSECQSLLLP-SKV 732
P +EA +++ + KPL P++C+ + +P SK
Sbjct: 704 HMDAGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKD 763
Query: 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 792
+K++RL Y N G + AL SNGV +W+W RN+ + +AT V P+ +QP G M
Sbjct: 764 SVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG-LLM 822
Query: 793 VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 852
ND + N + +VPC ALSKND+Y+ SA GG +SL+ +MTFK + T MPP P +T LAF+
Sbjct: 823 ANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFH 881
Query: 853 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 912
P DNN+IAIGM+DS+I IYN R EV +KL+GH K +TGL FS ALNILVSSG DAQ+F
Sbjct: 882 PQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFF 941
Query: 913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ 972
W D W + ++Q P G + +T +QFH DQ + L+ HET LAIY+A ++ C+ +
Sbjct: 942 WTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHK 999
Query: 973 WFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL-RPTTSCL 1029
W P ++ PI+ A++SC+ ++V+ SF DG +++ +A +L ++CRI +AY+ +PT +
Sbjct: 1000 WVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSA 1059
Query: 1030 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV 1069
++P I AHP +P Q AVGL++G V VIEP+E W V
Sbjct: 1060 PIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/1129 (46%), Positives = 711/1129 (62%), Gaps = 75/1129 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F ES H LE+ES F+F+ K+F++ +L G+W+DVE YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD + AKA+ IL +DL+ F+ NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L + R++E LSKY GD +AR M+ ELK++IEANP+ + KL FP+++ RLR LINQSL
Sbjct: 121 LQNFRENEQLSKY-GDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
NWQH C NP+PNPDI TLF DH C L + + P T P+++
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQ---PVTTLTKPAAYPSLGPHV 236
Query: 234 ------------NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILN 281
+S M S S V ++ P M +P++ + IL
Sbjct: 237 PFPPGPAAANAGALASWMAAASGASAVQAAVVTP----ALMPQPQNQ--------MSILK 284
Query: 282 EQASTVTYPGVSLKNIPDYS------PKSSLKKEMFQSFGET---SFSDFPKTVAQTLIE 332
+ PG+ PD+ P S+++ + + + S D P A L +
Sbjct: 285 RPRTPPATPGIVDYQNPDHELMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQ 344
Query: 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392
GS+ SM+F+P+Q+TLLLVG+ G+ LW++ + ++L R FK+WD+ CS F+ +
Sbjct: 345 GSTV-TSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403
Query: 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 452
++ +SV RV WSPDG+ +GVA++KH++QLYA+ G +D RQ EIDAHVG VNDLAF+ P
Sbjct: 404 KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463
Query: 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 512
+Q+ VITCGDDK IKVWD V+G + ++FEGH APVYS+CPH KENI FIFS ++DGKIK
Sbjct: 464 NRQLCVITCGDDKLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522
Query: 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
AWLYD+LG+RVDYDAPG CTRM YSA+G RLFSCGTSK+G+SFLVEWNESEG+IKRTY+
Sbjct: 523 AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582
Query: 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632
+ Q VV FDT+K+ LA G+D IK WDMN + +LT+ DA GGLP P + FNK
Sbjct: 583 --EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNK 640
Query: 633 NGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691
+G LLAV +N KIL P S+ A + + V+ V GA +A+ + V
Sbjct: 641 DGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVD-FKAVPGAPVASVNCKVE 699
Query: 692 E-------------DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV-KANKI 737
DP K I + + PS+C LP + K+
Sbjct: 700 RGSPVRHSQMLNGVDPS---KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756
Query: 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797
+L Y N G I AL SNG+ +W+W N+ S +AT V P+ +QP G M ND +
Sbjct: 757 VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSG-LLMTNDVS 815
Query: 798 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857
N + A PC ALSKND+Y+ SA+GG +SL+ +MTFK + T MPP P +T LAF+P DNN
Sbjct: 816 GVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 875
Query: 858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917
VIAIGM+DSTI IYN R EV SKL+GH KR+TGL FS ALNILVSSG DAQI W +D
Sbjct: 876 VIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDT 935
Query: 918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS 977
W + ++Q P G A +T +QFH DQ R L+VHET LA+++A ++ C++QW P
Sbjct: 936 WEKRKSVAIQMPAG--KAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQD 993
Query: 978 SV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035
S+ PIS A ++C+ ++++T+F DG + + +A +L ++CRI +AYL L P
Sbjct: 994 SLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQGNQGLS--PLV 1051
Query: 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTS 1084
+AAHP P QFAVGL +G V ++EP E W ++PP E + + P++TS
Sbjct: 1052 VAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAI-NSPSTTS 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 146/331 (44%), Gaps = 44/331 (13%)
Query: 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI--GA 382
T QTL SS +S+ F P V + GD + K+WD G
Sbjct: 958 TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000
Query: 383 CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG 442
C T + G SV V +SPDG + ++++ G+ Q LE H G
Sbjct: 1001 C-----TQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGT-CTQTLE--GHGG 1052
Query: 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIH 500
V + FS ++++ + DD TIK+WDAV+G+ T + EGHG V+S+ P +
Sbjct: 1053 WVQSVVFSPDGQRVA--SGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR--- 1107
Query: 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
+ S S+DG IK W S + G +A+S +G+R+ S + + W
Sbjct: 1108 -VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRV----ASGSIDGTIKIW 1162
Query: 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620
+ + G +T +G V V F ++ + D IKIWD T++ G
Sbjct: 1163 DAASGTCTQTLEG---HGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHG 1219
Query: 621 GLPENPRICFNKNGTLLAVIANENRIKILET 651
G ++ + F+ +G +A +++N IKI +T
Sbjct: 1220 GWVQS--VAFSPDGQRVASGSSDNTIKIWDT 1248
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 138/626 (22%), Positives = 244/626 (38%), Gaps = 88/626 (14%)
Query: 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408
+L G++ LWD++SGQ C FK R V VV+SP+
Sbjct: 920 MLASGSDDQTVRLWDISSGQ--------------CLKTFKGHTSR-----VRSVVFSPNS 960
Query: 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 467
+L S V+L+ G + L I H G V +AF+ ++ T D+T+
Sbjct: 961 LMLASGSSDQTVRLWDISSG----ECLYIFQGHTGWVYSVAFNLDGSMLA--TGSGDQTV 1014
Query: 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527
++WD + Y F+GH + V S+ + + + S S D ++ W D Y
Sbjct: 1015 RLWDISSSQCFYIFQGHTSCVRSVVFSSDGAM--LASGSDDQTVRLW--DISSGNCLYTL 1070
Query: 528 PG-LGCTR-MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585
G C R + +S +G L S G + + W+ S G T QG + V +
Sbjct: 1071 QGHTSCVRSVVFSPDGAMLASGGD----DQIVRLWDISSGNCLYTLQGYT---SWVRFLV 1123
Query: 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645
F + D ++++WD++ + L T+ G + F+ +G LA + +
Sbjct: 1124 FSPNGVTLANGSSDQIVRLWDISSKKCLYTLQ--GHTNWVNAVAFSPDGATLASGSGDQT 1181
Query: 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV------- 698
+++ + S + + + + NP + +G ++ +V + E
Sbjct: 1182 VRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGH 1241
Query: 699 ---------KPEISVEAENKSEVEKPLF-ARPSECQSLLLPSKVKANKISRLTYNNGGQA 748
P+ S+ A S+ L+ S+C L + N ++ + +N G
Sbjct: 1242 TSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKC---LHTFQGHTNWVNSVAFNPDGSM 1298
Query: 749 IFALASNGVHLMWR---------------WPRN-----DLTLSTEATTKVPPRLYQPRHG 788
+ + + + +W W + D T+ + RL+ G
Sbjct: 1299 LASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSG 1358
Query: 789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTAT 847
T V S + A L S SG + L+ + + K + T+ +
Sbjct: 1359 ECLY----TFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVG 1414
Query: 848 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 907
S+ F+P D ++A G DD T+ ++N S E + L GH V + FS IL S D
Sbjct: 1415 SIVFSP-DGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDD 1473
Query: 908 AQIFVWDVD-GWGIQTCRSLQTPDGV 932
I +WDV G I+T +S + +G+
Sbjct: 1474 ETIKLWDVKTGECIKTLKSEKIYEGM 1499
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 120/545 (22%), Positives = 224/545 (41%), Gaps = 35/545 (6%)
Query: 374 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
+ +VW++ + +L + R V VV+SPDG +L + V+L++ G +
Sbjct: 665 HVRVWEVKSGKLLL---ICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIK- 720
Query: 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
+ H V +AF + ++ + DKTIK+WD G+ + GH V C
Sbjct: 721 --TLTGHEHEVFSVAFHPDGETLA--SASGDKTIKLWDIQDGTCLQTLTGHTDWVR--CV 774
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-MAYSANGRRLFSCGTSKE 552
+ + + S + D IK W S G + G R +A+SA+G+ L S
Sbjct: 775 AFSPDGNTLASSAADHTIKLWDV-SQGKCLRTLKSHTGWVRSVAFSADGQTL----ASGS 829
Query: 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612
G+ + WN G +TY G NSV + + +++ D IK+WD
Sbjct: 830 GDRTIKIWNYHTGECLKTYIG---HTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHIC 886
Query: 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672
+ T+ G E + F+ +G LA ++ + +++ + A +D ++
Sbjct: 887 IKTLH--GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAF 944
Query: 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 732
+P + +G + +V + + IS + + F+ S Q+L S
Sbjct: 945 SPDRQILASGSNDKTVKLWD---WQTGKYISSLEGHTDFIYGIAFSPDS--QTLASASTD 999
Query: 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 792
+ ++ ++ Q I ++ V+ + P+ + + A V +L+ G
Sbjct: 1000 SSVRLWNISTGQCFQ-ILLEHTDWVYAVVFHPQGKIIATGSADCTV--KLWNISTGQCL- 1055
Query: 793 VNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAF 851
T S + + A S + L SAS + L+ T + + + S S F
Sbjct: 1056 ---KTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIF 1112
Query: 852 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911
+P + +IA D T+ I++ + + + L GH+ V + FS IL S+ D +
Sbjct: 1113 SP-NGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVR 1171
Query: 912 VWDVD 916
+WDV+
Sbjct: 1172 IWDVN 1176
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 142/630 (22%), Positives = 254/630 (40%), Gaps = 128/630 (20%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+V V +SPDG + S ++L+ G+ + I H VN++ FS K ++
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDGKNLA 1171
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAW- 514
+ D +IK+WD +G + GH A V ++ P + I + S D +K W
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQT----IAAGSEDKTVKLWH 1225
Query: 515 -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569
L +L D+ +++S +G+ L S K + W ++G + +
Sbjct: 1226 RQDGKLLKTLNGHQDW------VNSLSFSPDGKTLASASADKT----IKLWRIADGKLVK 1275
Query: 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629
T +G ++SV V+F + I +A D+ IK+W+ + ++L T GG+ +
Sbjct: 1276 TLKG---HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VN 1329
Query: 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI---STVTGAGIANG 686
F + ++A + +N I++ + P + ++ VL+ N +V+ + S + AG A+G
Sbjct: 1330 FLPDSNIIASASLDNTIRLWQRPLISPLE---VLAGNSGVYAVSFLHDGSIIATAG-ADG 1385
Query: 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL--LPSKVKANKISRLTYNN 744
++ + S+ SLL LP
Sbjct: 1386 NIQLWH----------------------------SQDGSLLKTLP--------------- 1402
Query: 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804
G +AI+ ++ P+ DL S A V ++++ R G D+
Sbjct: 1403 GNKAIYGISFT--------PQGDLIASANADKTV--KIWRVRDGKALKTLIGHDNE---- 1448
Query: 805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863
V S + L SAS + L+ V K T+ + ++F+P D +IA
Sbjct: 1449 VNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSP-DGKIIASAS 1507
Query: 864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV-DGWGIQT 922
D TI ++++ S +I L H+ V + F+ ++L S+ D + +W DG + T
Sbjct: 1508 ADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHT 1567
Query: 923 --------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF 974
S +PDG + SE D+T + + HL LT L
Sbjct: 1568 FSGHSNVVYSSSFSPDGRYIASASE-------DKTVKIWQIDGHL-------LTTL---- 1609
Query: 975 PISSVPISQATFSCDCRMVFTSFVDGTLSI 1004
P + A FS D + + + +D T I
Sbjct: 1610 PQHQAGVMSAIFSPDGKTLISGSLDTTTKI 1639
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 22/275 (8%)
Query: 375 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
VWD+ + L D V V +SPDG+LL V+L+ + A ++
Sbjct: 483 IHVWDVASGDELHTLEGHTD---WVRAVAFSPDGALLASGSDDATVRLWDV---AAAEER 536
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
+ H V D+AFS S++ G D T ++W+ TG+ +GH VY++
Sbjct: 537 AVFEGHTHYVLDIAFS---PDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVA- 592
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
+ + S S DG I+ W + R AP +A+S +G L
Sbjct: 593 -FSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHG-----S 646
Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
+S + W+ + G T++G + V V F + + DD I++WD+ +
Sbjct: 647 DSTVHLWDVASGEALHTFEG---HTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEH 703
Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
TT++ G P + + F+ GT LA + + I+I
Sbjct: 704 TTLE-GHTEPVH-SVAFHPEGTTLASASEDGTIRI 736
|
May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1092 | ||||||
| 224141931 | 1109 | predicted protein [Populus trichocarpa] | 0.975 | 0.960 | 0.585 | 0.0 | |
| 356550630 | 1132 | PREDICTED: topless-related protein 1-lik | 0.958 | 0.924 | 0.556 | 0.0 | |
| 357455301 | 1134 | WD repeat-containing protein, putative [ | 0.959 | 0.924 | 0.550 | 0.0 | |
| 357455305 | 1149 | WD repeat-containing protein, putative [ | 0.959 | 0.912 | 0.550 | 0.0 | |
| 357455303 | 1112 | WD repeat-containing protein, putative [ | 0.959 | 0.942 | 0.555 | 0.0 | |
| 356526242 | 1133 | PREDICTED: protein TOPLESS-like [Glycine | 0.957 | 0.923 | 0.551 | 0.0 | |
| 357458875 | 1138 | WD repeat-containing protein, putative [ | 0.960 | 0.921 | 0.552 | 0.0 | |
| 356554802 | 1136 | PREDICTED: topless-related protein 1-lik | 0.969 | 0.932 | 0.550 | 0.0 | |
| 24461849 | 1127 | CTV.2 [Citrus trifoliata] | 0.955 | 0.925 | 0.552 | 0.0 | |
| 297839887 | 1120 | hypothetical protein ARALYDRAFT_895943 [ | 0.956 | 0.933 | 0.547 | 0.0 |
| >gi|224141931|ref|XP_002324314.1| predicted protein [Populus trichocarpa] gi|222865748|gb|EEF02879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1218 bits (3151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/1103 (58%), Positives = 784/1103 (71%), Gaps = 38/1103 (3%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
M+ L KDLV LI QFL+EEGF E+A MLERES +YF MKFFEDMI G W++ E+YLS F
Sbjct: 1 MAALCKDLVLLISQFLDEEGFKETARMLERESGYYFSMKFFEDMIRSGNWDEAERYLSCF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TK+DDNRYSTKIYFEIRKQ F E LD + +KAL+IL KDLK FAP NEEL KE+ LLT
Sbjct: 61 TKLDDNRYSTKIYFEIRKQKFLEVLDNDERSKALDILMKDLKAFAPDNEELLKEMTLLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++IRDHE LS Y DA SARK MM+ELK++IEANP+L+ KL+FP+I RLRRLINQSL
Sbjct: 121 LNNIRDHESLS-MYSDAESARKVMMVELKKVIEANPLLRDKLEFPNIANHRLRRLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQETD---FSGQSSESNALPPQTTQ----SPSSW 233
NWQH+HCA PQPNPDI TLFVDH+C +D FS +S+SN LP QTT + S+
Sbjct: 180 NWQHMHCAYPQPNPDIRTLFVDHICVPIPSDDHLFSA-ASDSNPLPSQTTSMLVSTSSAS 238
Query: 234 NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILS-------EKSPVRILNEQAST 286
N +SS S++S ALSL PTN + E +LS + + +L E +T
Sbjct: 239 NSTSSSEAHSSISSEALSLGVPTNIGSFIVVIEKKLLLSLTIYSMFVAAMIEVL-EDNTT 297
Query: 287 VTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS-----DFPKTVAQTLIEGSSSPMSMD 341
V G+ I + S+ +F F S D PK V + L EGSS P SMD
Sbjct: 298 VNDSGIPKNRIVNLKRPSNEASLIFHFFLLKHCSVNISDDLPKNVFRILNEGSS-PTSMD 356
Query: 342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401
FHP + T+LLVGT VGD GLW+V+SG+ L RNFKVWDI ACSM+FK L++DP VSVNR
Sbjct: 357 FHPEKQTVLLVGTTVGDIGLWEVSSGESLLSRNFKVWDIAACSMMFKATLLKDPSVSVNR 416
Query: 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461
V WSP+G L GVAYSKH+VQ+Y+Y+ DARQQLEIDAHVG VNDL FSAP KQ+ VITC
Sbjct: 417 VAWSPEGGLFGVAYSKHLVQIYSYNEAKDARQQLEIDAHVGGVNDLTFSAPEKQLLVITC 476
Query: 462 GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 521
GDDK +K WDA G + Y+FEGH APVYSLCP++K N+HF+F+ SV+G IK WLYD+LGA
Sbjct: 477 GDDKIVKAWDATDGVKMYTFEGHDAPVYSLCPYSKGNVHFVFATSVNGNIKVWLYDNLGA 536
Query: 522 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 581
RVDYDAPGLGCT MAYS + RRLFSCGTS GESFLVEW++SEGAIKRTY G LQ NS
Sbjct: 537 RVDYDAPGLGCTSMAYSGD-RRLFSCGTSGSGESFLVEWDDSEGAIKRTYLG--LQKNSS 593
Query: 582 SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641
SVV FD K+Q+LAAGD+HVIKIWDMNK++L TTIDA GGLP NP + FNK GTLLAV A
Sbjct: 594 SVVQFDIMKNQVLAAGDEHVIKIWDMNKIELFTTIDAEGGLPANPCVRFNKEGTLLAVSA 653
Query: 642 NENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS------VNED 693
N+N+IKIL S + L D+ R +S IS A A+ +V+ +
Sbjct: 654 NDNKIKILAKDGSLQSLHTTENCLDDDFRLVS-EAISKGACAQDADEAVAKQCFNLLQNG 712
Query: 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 753
+ VK +I+ + PS+CQ L LPS +KANKISRL YNN G +I AL
Sbjct: 713 NLKAVKSKITGKDTKSKSGRLIELNSPSQCQILRLPSHMKANKISRLIYNNAGNSILALT 772
Query: 754 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813
SN HL W+WP+ND LS A KV P+L+QPR M ND T SN +E VPCFALS+N
Sbjct: 773 SNATHLYWKWPQNDFDLSDTAAAKVSPQLWQPRSYSGLMTNDLTGSNPEETVPCFALSRN 832
Query: 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873
D+YL S+SGG ISLY ++ FKT+L+IM P P AT +AF+P DNN++AIG D+STILIYN
Sbjct: 833 DSYLMSSSGGRISLYNLLKFKTMLSIMQPPPAATCIAFHPQDNNILAIGRDNSTILIYNV 892
Query: 874 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 933
RS++VI+ LEGHSKRV+GL FS+ LN+LVSSG DAQIFVW+V+GW Q LQ PDG +
Sbjct: 893 RSAKVITILEGHSKRVSGLAFSNDLNLLVSSGADAQIFVWNVEGWYKQRSTFLQIPDGRI 952
Query: 934 TLAPS-ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCR 991
+ S +THIQFH++QT FL VHETHLAIYEA +L C+KQW P + PIS ATFSCD +
Sbjct: 953 PFSLSTDTHIQFHQNQTEFLSVHETHLAIYEARKLECVKQWIPGDFATPISHATFSCDGQ 1012
Query: 992 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1051
MV+ SF+DG +SI +AS+ ++ C+I TAYL PT+S L VYP AIAAHP +P QFAVGLT
Sbjct: 1013 MVYASFLDGLVSIFDASDFQLYCQINPTAYLFPTSS-LGVYPIAIAAHPQEPNQFAVGLT 1071
Query: 1052 NGEVYVIEPNEPGDTWAVLPPDE 1074
+G V V EP W++L DE
Sbjct: 1072 DGGVIVFEPPISAGKWSMLTADE 1094
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 633/1138 (55%), Positives = 787/1138 (69%), Gaps = 91/1138 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
Q T +P + W + + + AVS A+ L P+ A ++D P D
Sbjct: 240 QPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGD 299
Query: 268 SDILSEKS-PVRILNE-----QASTVTYPGVSLK---NIPDYSPKSSLKKEMFQSFGETS 318
SD +S+++ P+ + +E + T+PG N PD
Sbjct: 300 SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHGQAFNAPD------------------- 340
Query: 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW 378
D PKT ++L +GSS PMSMDFHPVQ TLLLVGTNVGD LW+V S ++L +RNFKVW
Sbjct: 341 --DLPKTAMRSLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVW 397
Query: 379 DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID 438
D+ ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG D Q LEID
Sbjct: 398 DLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEID 457
Query: 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 498
AHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KEN
Sbjct: 458 AHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKEN 517
Query: 499 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558
I FIFS ++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSKEGES +V
Sbjct: 518 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIV 577
Query: 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618
EWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+DA
Sbjct: 578 EWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDA 635
Query: 619 GGGLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKL 670
GGLP +PRI FNK+G LLAV ANEN IKIL + NS+ S+ + K
Sbjct: 636 DGGLPASPRIRFNKDGALLAVSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKP 695
Query: 671 SVNPISTVTG----------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLF 717
++NPIS A ++N D + DVKP IS E+ +KS++ K
Sbjct: 696 TINPISAAAAAATSAALAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEI 755
Query: 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777
PS+C+SL LP V+ NKISRL Y N G AI ALASN +HL+W+W RND + +AT
Sbjct: 756 NEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATAS 815
Query: 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL 837
V P+L+QP G M ND TD+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 816 VQPQLWQPSSG-ILMTNDITDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 874
Query: 838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 897
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 875 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHV 934
Query: 898 LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957
LN+LVSSG DAQI VW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHET
Sbjct: 935 LNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHET 994
Query: 958 HLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016
LAIYEA +L CLKQWFP SS PIS ATFSCD ++++ SF+D T+ + SNL ++CRI
Sbjct: 995 QLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRI 1054
Query: 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
+AYL + S +V P IAAHP +P QFAVGL++G V+V EP+E W V PP E
Sbjct: 1055 NPSAYLSASVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIE 1111
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455301|ref|XP_003597931.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486979|gb|AES68182.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/1139 (55%), Positives = 780/1139 (68%), Gaps = 91/1139 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239
Query: 225 QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
Q T +P + M + V+ ++S + PTN +V D
Sbjct: 240 QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 297
Query: 264 RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
P DSD +S+++ P+ + +E + T+PG Q+F
Sbjct: 298 YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 339
Query: 317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376
S D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 340 NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 398
Query: 377 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436
VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 399 VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 458
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 459 IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 518
Query: 497 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556
ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES
Sbjct: 519 ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 578
Query: 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616
+VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+
Sbjct: 579 IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 636
Query: 617 DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 667
DA GGLP +PRI FNK G+LLAV ANEN IKI L + E++S DA+ S+ +
Sbjct: 637 DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 695
Query: 668 RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
K +NP+ + + A +N D + D+KP IS E+ +KS++ K
Sbjct: 696 TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 755
Query: 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
PS C+SL LP + KISRL Y N G AI ALASN +HL+W+W RND S +AT
Sbjct: 756 INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 815
Query: 777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 836
VPP+L+QP G M ND D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 816 SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 874
Query: 837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 875 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 934
Query: 897 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
LN+LVSSG D QIFVW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHE
Sbjct: 935 VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 994
Query: 957 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
T LAIYEA +L CLKQWFP ++ PIS ATFSCD ++F SF+D T+ + ASNL ++CR
Sbjct: 995 TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1054
Query: 1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
I +AYL S ++ P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1055 INPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1113
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455305|ref|XP_003597933.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486981|gb|AES68184.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/1139 (55%), Positives = 780/1139 (68%), Gaps = 91/1139 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 16 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 75
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 76 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 135
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 136 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 194
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 195 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 254
Query: 225 QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
Q T +P + M + V+ ++S + PTN +V D
Sbjct: 255 QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 312
Query: 264 RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
P DSD +S+++ P+ + +E + T+PG Q+F
Sbjct: 313 YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 354
Query: 317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376
S D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 355 NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 413
Query: 377 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436
VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 414 VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 473
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 474 IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 533
Query: 497 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556
ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES
Sbjct: 534 ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 593
Query: 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616
+VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+
Sbjct: 594 IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 651
Query: 617 DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 667
DA GGLP +PRI FNK G+LLAV ANEN IKI L + E++S DA+ S+ +
Sbjct: 652 DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 710
Query: 668 RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
K +NP+ + + A +N D + D+KP IS E+ +KS++ K
Sbjct: 711 TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 770
Query: 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
PS C+SL LP + KISRL Y N G AI ALASN +HL+W+W RND S +AT
Sbjct: 771 INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 830
Query: 777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 836
VPP+L+QP G M ND D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 831 SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 889
Query: 837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 890 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 949
Query: 897 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
LN+LVSSG D QIFVW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHE
Sbjct: 950 VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 1009
Query: 957 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
T LAIYEA +L CLKQWFP ++ PIS ATFSCD ++F SF+D T+ + ASNL ++CR
Sbjct: 1010 TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1069
Query: 1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
I +AYL S ++ P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1070 INPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1128
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455303|ref|XP_003597932.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486980|gb|AES68183.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/1117 (55%), Positives = 773/1117 (69%), Gaps = 69/1117 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239
Query: 225 QTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKS-PVRILNE- 282
Q T +P + M + V+ S+S + + P D +S+++ P+ + +E
Sbjct: 240 QPTPAPVPMPLAGWMSNPTPVAHP--SVSGGGAIGLGVGGPSMPDHISKRTRPIGMSDEG 297
Query: 283 ----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPM 338
+ T+PG Q+F S D PKTV +TL +G SSPM
Sbjct: 298 NLPVNVLSATFPG----------------HGHGQAF--NSPDDLPKTVLRTLNQG-SSPM 338
Query: 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398
SMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFKVWD+ ACSM F+ ALV+DP VS
Sbjct: 339 SMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVS 398
Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 458
VNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ V
Sbjct: 399 VNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCV 458
Query: 459 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
ITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+
Sbjct: 459 ITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDN 518
Query: 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG + +
Sbjct: 519 LGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR- 577
Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+DA GGLP +PRI FNK G+LLA
Sbjct: 578 -SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGSLLA 636
Query: 639 VIANENRIKI---------LETPESNSVDAAGVLSDNLRKLSVNPI--------STVTGA 681
V ANEN IKI L + E++S DA+ S+ + K +NP+ + + A
Sbjct: 637 VSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAMTKPIINPMSVATAATSAALERA 695
Query: 682 GIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKIS 738
+N D + D+KP IS E+ +KS++ K PS C+SL LP + KIS
Sbjct: 696 SSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENARVTKIS 755
Query: 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798
RL Y N G AI ALASN +HL+W+W RND S +AT VPP+L+QP G M ND D
Sbjct: 756 RLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATASVPPQLWQPSSG-ILMTNDIND 814
Query: 799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 858
+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+
Sbjct: 815 NNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 874
Query: 859 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918
IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS LN+LVSSG D QIFVW+ DGW
Sbjct: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADGQIFVWNTDGW 934
Query: 919 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-S 977
Q R LQ P G A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP +
Sbjct: 935 EKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDA 994
Query: 978 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1037
+ PIS ATFSCD ++F SF+D T+ + ASNL ++CRI +AYL S ++ P IA
Sbjct: 995 AAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCRINPSAYLSANVSSSNIQPLVIA 1054
Query: 1038 AHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
AHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1055 AHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1091
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1197 bits (3096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/1141 (55%), Positives = 787/1141 (68%), Gaps = 95/1141 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
Q T +P + W + + + +AVS A+ L P+ A ++D P
Sbjct: 240 QPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSG 299
Query: 267 DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS 320
DSD +++++ P+ I +E + T+PG + Q+F
Sbjct: 300 DSDHVAKRTRPMGISDEVNLPVNVLSATFPG---------------HGQHSQAFNAPD-- 342
Query: 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 380
D PKTV +TL +GSS PMSMDFHP+Q +LLLVGT+VGD LW+V S ++L RNFKVWD+
Sbjct: 343 DIPKTVVRTLNQGSS-PMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDL 401
Query: 381 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 440
ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAH
Sbjct: 402 SACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAH 461
Query: 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 500
VG VNDLAFS P KQ+ VITCGDDKTIKVWDA +G++ Y+FEGH APVYS+CPH KENI
Sbjct: 462 VGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQ 521
Query: 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
FIFS ++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+GES +VEW
Sbjct: 522 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEW 581
Query: 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620
NESEGA+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ VQLLTT+DA G
Sbjct: 582 NESEGAVKRTYQG--FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADG 639
Query: 621 GLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSV 672
GLP +PRI FNK+GTLLAV ANEN IKIL + NS+ A S+ L K ++
Sbjct: 640 GLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTI 699
Query: 673 NPI-----------------STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK- 714
NPI S V AG+ + ++ DVKP IS E+ +KS++ K
Sbjct: 700 NPISAAAAAATSAALAERASSVVAIAGMNGDTRNLG-----DVKPRISEESNDKSKIWKL 754
Query: 715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 774
S+C+SL LP V+ KISRL Y N G AI ALASN +HL+W+W RN+ S +A
Sbjct: 755 TEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKA 814
Query: 775 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 834
T + P+L+QP G M ND DSN ++AVPCFALSKND+Y+ SASGG ISL+ +MTFK
Sbjct: 815 TATLQPQLWQPSSG-ILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK 873
Query: 835 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
T+ T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL F
Sbjct: 874 TMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAF 933
Query: 895 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
S LN+LVSSG DAQI VW+ DGW Q R LQ P G A S+T +QFH+DQ +FL+V
Sbjct: 934 SHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVV 993
Query: 955 HETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013
HET LAIYEA +L LKQWFP SS PIS ATFSCD ++VF SF+D T+ + ASNL ++
Sbjct: 994 HETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLR 1053
Query: 1014 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1073
CRI ++YL P + ++ P IAAHP +P QFA+GL++G V+V EP E W V PP
Sbjct: 1054 CRINPSSYL-PASVSSNIQPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPI 1112
Query: 1074 E 1074
E
Sbjct: 1113 E 1113
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1193 bits (3086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/1140 (55%), Positives = 782/1140 (68%), Gaps = 91/1140 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPPQTTQSP- 230
NWQH C NP+PNPDI TLFVDH C + G ++ PP P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPF 239
Query: 231 -----------SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
+ W + + + +AVS A+ L P+ ++D P
Sbjct: 240 QPNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGALKHPRTPPINPSVDYPSG 299
Query: 267 DSDILSEKS-PVRILNEQASTV-----TYPGVSLK---NIPDYSPKSSLKKEMFQSFGET 317
DSD +++++ P+ I +E V T+PG N PD P
Sbjct: 300 DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHSQAFNAPDDLP--------------- 344
Query: 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKV 377
PKTV +TL +GSS PMSMDFHPVQ +LLLVGTNVG LW+V S +KL RNFKV
Sbjct: 345 ----LPKTVTRTLNQGSS-PMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKV 399
Query: 378 WDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI 437
WD+ ACSM F+ ALV+DP VSVNRV+WSPDG+L GVAYS+HIVQ+Y+YH G D RQ LEI
Sbjct: 400 WDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEI 459
Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497
DAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDAV+G++ Y+FEGH APVYS+CPH KE
Sbjct: 460 DAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKE 519
Query: 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557
NI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES +
Sbjct: 520 NIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSI 579
Query: 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+D
Sbjct: 580 VEWNESEGAVKRTYQGFRKR--SMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVD 637
Query: 618 AGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNLR 668
A GGLP +PRI FNK+GTLLAV AN+N IKI L T E+NS+ A S+ +
Sbjct: 638 ADGGLPASPRIRFNKDGTLLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASE-MA 696
Query: 669 KLSVNPISTVTG---------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
K ++N +S+ A +N D + DVKP IS EA +KS++ K
Sbjct: 697 KPTINSMSSAAAATSAALAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTE 756
Query: 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
PS C+SL LP V+ NKISRL Y N G AI ALASN +HL+W+WPRN+ S +A
Sbjct: 757 INEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANA 816
Query: 777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 836
VP +L+QP G M ND DSN +++VPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 817 SVPAQLWQPSSG-ILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 875
Query: 837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 876 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 935
Query: 897 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
LN+LVSSG DAQI VW+ DGW Q R LQ P G A S+T +QFH+DQ +FL+VHE
Sbjct: 936 VLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHE 995
Query: 957 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
T LAI+EA +L CLKQW P SS PIS ATFSCD ++++ SF+D T+ + ASNL ++CR
Sbjct: 996 TQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCR 1055
Query: 1016 ILSTAYLRPTTSC-LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
I AYL + S +V P IAAHP + QFAVGL++G V+V EP E W V PP+E
Sbjct: 1056 INPPAYLPASVSSNSNVQPLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNE 1115
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1192 bits (3085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/1130 (55%), Positives = 775/1130 (68%), Gaps = 71/1130 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FE+ KQ + EALD HD +KA+ IL KDLK FA N+ELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY D SAR M++ELK++IEANP+ KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKYC-DTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC-QLQETD--------FSGQSSESNALPPQTTQSP- 230
NWQH C NP+PNPDI TLFVDH C QL G ++ PP P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPF 239
Query: 231 -----------SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
+ W + + + VS A+ L P+ A ++D P D
Sbjct: 240 QPSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAALKHPRTPPTYPSVDYPSGD 299
Query: 268 SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
SD +S+++ P+ + +E V + P Q+F D PKT
Sbjct: 300 SDHVSKRTRPMGMSDEVNLPVNVLSATF-------PGHGHGHGHGQAFNAP--DDLPKTA 350
Query: 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 386
+TL +G SSPMSMDFHPVQ TLLLVGTNVGD LW+V S ++L +RNFKVWD+ ACSM
Sbjct: 351 MRTLNQG-SSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMP 409
Query: 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
F+ ALV+DPGVSV RV+WSPDG+L GVAYS+HIVQ+Y+YH G D +Q LEIDAHVG VND
Sbjct: 410 FQAALVKDPGVSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVND 469
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
LAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KENI FIFS +
Sbjct: 470 LAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTA 529
Query: 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566
+DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+ ES +VEWNESEGA
Sbjct: 530 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGA 589
Query: 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
+KRTYQG + S+ V FDT K++ LAAGDD IK WDM+ +QLLTT+DA GGLP +P
Sbjct: 590 VKRTYQG--FRKRSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSP 647
Query: 627 RICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPISTV 678
RI FNK+G LLAV A EN IKIL + NS+ S+ + K ++NPIS
Sbjct: 648 RIRFNKDGALLAVSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAA 707
Query: 679 TGAGIAN----------GSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQS 725
A + G ++N D + DVKP IS E+ +KS++ K PS+C+S
Sbjct: 708 AAAATSAALGERALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRS 767
Query: 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785
L LP V+ NKISRL Y N G AI ALASN +HL+W+W RND + +A+ V P+L+QP
Sbjct: 768 LKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQP 827
Query: 786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT 845
G M ND TDSN+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P
Sbjct: 828 SSG-ILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA 886
Query: 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905
A LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS LN+LVSSG
Sbjct: 887 ANFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSG 946
Query: 906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965
DAQI VW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHET LAIYEA
Sbjct: 947 ADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEAT 1006
Query: 966 ELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1024
+L CLKQWFP SS PIS ATFSCD ++++ SF+D T+ + SNL +QCRI +AYL
Sbjct: 1007 KLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSA 1066
Query: 1025 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
+ S +V P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1067 SVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIE 1115
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 1191 bits (3082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/1131 (55%), Positives = 782/1131 (69%), Gaps = 88/1131 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W+DVE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD AKA+ IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K N SL
Sbjct: 121 LENFRENEQLSKY-GDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSL 171
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 172 NWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPF 231
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPE------------- 266
Q T +P + W + +T AVS A+ L P+ A + P
Sbjct: 232 QPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291
Query: 267 DSDILSEKS-PVRILNEQASTVTYPGVSLKNIP-DYSPKSSLKKEMFQSFGETSFSDFPK 324
DSD LS+++ P+ I +E N+P + P S Q+F ++ D PK
Sbjct: 292 DSDHLSKRTRPIGISDE------------INLPVNVLPVSFTGHSHSQAF--SAPEDLPK 337
Query: 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS 384
TV +TL +GSS PMSMDFHPVQ TLLLVGTNVGD GLW+V S ++L +RNFKVWD+GACS
Sbjct: 338 TVTRTLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 396
Query: 385 MLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV 444
M + ALV+DPGVSVNRV+WSPDGSL GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG V
Sbjct: 397 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 456
Query: 445 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS 504
ND+AFS P KQ+ VITCGDDKTIKVWDA G++ Y FEGH APVYS+CPH KENI FIFS
Sbjct: 457 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS 516
Query: 505 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564
++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+GESF+VEWNESE
Sbjct: 517 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESE 576
Query: 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624
GA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ VQLLT+IDA GGLP
Sbjct: 577 GAVKRTYQGFRKR--SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA 634
Query: 625 NPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPIS 676
+PRI FNK+G LLAV N+N IKIL T + N A S+N K +++PIS
Sbjct: 635 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPIS 693
Query: 677 -----TVTGAGIANGSVSVNEDPK--------EDVKPEISVEAENKSEVEK-PLFARPSE 722
T AG+A+ + S+ P DVKP I+ E+ +KS+V K + P++
Sbjct: 694 AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 753
Query: 723 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782
C+SL LP ++A KISRL + N G AI ALASN +HL+W+W R + S +AT V P+L
Sbjct: 754 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 813
Query: 783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 842
+QP G M ND TDSN +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP
Sbjct: 814 WQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP 872
Query: 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GHSKR+TGL FS ALN+LV
Sbjct: 873 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 932
Query: 903 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 962
SSG D+Q+ VW DGW Q R LQ P G A S+T +QFH+DQ FL+VHET LAI+
Sbjct: 933 SSGADSQLCVWGSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 992
Query: 963 EAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021
E +L C+KQW P SS PI+ ATFSCD ++V+ F+D T+ + A+NL+++CRI +AY
Sbjct: 993 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1052
Query: 1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1072
L P +V+P IAAHP +P +FA+GL++G V+V EP E W V PP
Sbjct: 1053 L-PAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1102
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839887|ref|XP_002887825.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] gi|297333666|gb|EFH64084.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1191 bits (3080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/1126 (54%), Positives = 778/1126 (69%), Gaps = 81/1126 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD KA+ IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C+L G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSL-------------SDPTNKAVTMDRPE 266
Q T SP + W S S + AVS A++L + PTN AV D P
Sbjct: 240 QPTPSPVPTPLAGWMSSPSSVPHPAVSGGAIALGAPSIQAALKHPRTPPTNSAV--DYPS 297
Query: 267 -DSDILSEKS-PVRILNEQASTV-----TYPGVSLKN-----IPDYSPKSSLKKEMFQSF 314
DSD +S+++ P+ I +E + V T+PG + + +PD
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKVPD--------------- 342
Query: 315 GETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374
D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L +
Sbjct: 343 ------DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKT 395
Query: 375 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
FKVWD+ CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct: 396 FKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQH 455
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + ++FEGH APVYS+CPH
Sbjct: 456 LEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRHTFEGHEAPVYSICPH 515
Query: 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
KENI FIFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+GE
Sbjct: 516 YKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGE 575
Query: 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
SF+VEWNESEGA+KRTYQG S+ VV FDT K++ LAAGDD IK WDM+ +QLLT
Sbjct: 576 SFIVEWNESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLT 633
Query: 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673
IDA GGL +PRI FNK G+LLAV AN+N IK++ + + LS K ++N
Sbjct: 634 AIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAIN 693
Query: 674 PISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPS 730
I +N D + DVKP I+ E+ +KS+V K PS+C+SL LP
Sbjct: 694 SIPVAERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTELGEPSQCRSLRLPE 753
Query: 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790
++A KISRL + N G AI ALASN +HL+W+W RND + +AT VPP+ +QP G
Sbjct: 754 NMRATKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASVPPQQWQPASG-I 812
Query: 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA 850
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LA
Sbjct: 813 LMTNDVVETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 872
Query: 851 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910
F+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+
Sbjct: 873 FHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQL 932
Query: 911 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 970
VW+ DGW Q + LQ P G T A S+T +QFH+DQ FL+VHET LAIYE +L C+
Sbjct: 933 CVWNTDGWEKQKSKVLQIPQGRSTSALSDTRVQFHQDQVHFLVVHETQLAIYETTKLECM 992
Query: 971 KQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028
KQW P+ SS PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S
Sbjct: 993 KQW-PVRESSAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSN 1051
Query: 1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
+V+P IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1052 SNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1092 | ||||||
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.735 | 0.716 | 0.559 | 1.20000000015e-314 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.791 | 0.763 | 0.537 | 1.10000000001e-313 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.648 | 0.625 | 0.489 | 2.4e-269 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.321 | 0.474 | 0.361 | 8.2e-86 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.556 | 0.445 | 0.239 | 4.8e-17 | |
| MGI|MGI:1918511 | 476 | Poc1b "POC1 centriolar protein | 0.229 | 0.527 | 0.242 | 3.5e-14 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.187 | 0.665 | 0.243 | 8.4e-14 | |
| TAIR|locus:2172432 | 523 | AT5G43920 "AT5G43920" [Arabido | 0.168 | 0.351 | 0.264 | 9.9e-14 | |
| FB|FBgn0040066 | 361 | wds "will die slowly" [Drosoph | 0.187 | 0.567 | 0.247 | 1.1e-13 | |
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.187 | 0.613 | 0.243 | 1.2e-13 |
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2337 (827.7 bits), Expect = 1.2e-314, Sum P(2) = 1.2e-314
Identities = 463/827 (55%), Positives = 589/827 (71%)
Query: 255 PTNKAVTMDRPE-DSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQS 313
P+N AV D P DSD +S+++ ++++ S GV++ +P P + Q+
Sbjct: 288 PSNSAV--DYPSGDSDHVSKRTRPMGISDEVSL----GVNM--LPMTFPGQAHGHN--QT 337
Query: 314 FGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIR 373
F D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L +
Sbjct: 338 FKAPD--DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQK 394
Query: 374 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
FKVWD+ CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct: 395 TFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQ 454
Query: 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CP
Sbjct: 455 HLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICP 514
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
H KENI FIFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+G
Sbjct: 515 HYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDG 574
Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
ESF+VEWNESEGA+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ +QLL
Sbjct: 575 ESFIVEWNESEGAVKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLL 632
Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSV 672
T IDA GGL +PRI FNK G+LLAV AN+N IK++ + + LS K ++
Sbjct: 633 TAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAI 692
Query: 673 NPISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLP 729
N I V +N D + DVKP I+ E+ +KS+V K PS+C+SL LP
Sbjct: 693 NSIPMVERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752
Query: 730 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 789
++ KISRL + N G AI ALASN +HL+W+W RND + +AT +PP+ +QP G
Sbjct: 753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812
Query: 790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 849
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT L
Sbjct: 813 -LMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 871
Query: 850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 909
AF+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ
Sbjct: 872 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 931
Query: 910 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 969
+ VW+ DGW Q + LQ P G T + S+T +QFH+DQ FL+VHET LAIYE +L C
Sbjct: 932 LCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLEC 991
Query: 970 LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1027
+KQW P+ S+ PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S
Sbjct: 992 MKQW-PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLS 1050
Query: 1028 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
+V+P IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1051 NSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2335 (827.0 bits), Expect = 1.1e-313, Sum P(2) = 1.1e-313
Identities = 481/895 (53%), Positives = 609/895 (68%)
Query: 223 PPQTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPV 277
P Q T SP + W S S + AVS A++L P+ A + P +
Sbjct: 238 PFQPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYP 296
Query: 278 RILNEQASTVTYP-GVSLK-NIP-DYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGS 334
+E S T P G+S + N+ + P S + S + D PKTVA+TL +GS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
S PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L + FKVWD+ CSM + ALV++
Sbjct: 357 S-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK 454
P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND++FS P K
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNK 475
Query: 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
Q+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAW
Sbjct: 476 QLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535
Query: 515 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574
LYD++G+RVDYDAPG CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQG
Sbjct: 536 LYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634
+ S+ VV FDT K++ LAAGDD IK WDM+ VQLLT ID GGL +PRI FNK G
Sbjct: 596 HKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEG 653
Query: 635 TLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTV-----TGAGIANGSV 688
+LLAV NEN IKI+ + + +S K ++N I+ T AG A+ S
Sbjct: 654 SLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSA 713
Query: 689 SV------NEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLPSKVKANKISR 739
+V N D + DVKP I+ E+ +KS++ K + PS+C+SL LP ++ KISR
Sbjct: 714 NVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISR 773
Query: 740 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 799
L + N G AI ALASN +HL+W+W RN+ + +AT +PP+ +QP G M ND ++
Sbjct: 774 LIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI-LMTNDVAET 832
Query: 800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 859
N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+I
Sbjct: 833 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 892
Query: 860 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919
AIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DGW
Sbjct: 893 AIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWE 952
Query: 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV 979
Q + L P G APS+T +QFH+DQ FL+VHET LAIYE +L C+KQW S+
Sbjct: 953 KQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESL 1012
Query: 980 -PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1038
PI+ ATFSCD ++V+ SF+D T+ + ++NL ++CR+ +AYL + S +V+P IAA
Sbjct: 1013 APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAA 1072
Query: 1039 HPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDRAMD 1091
HP +P FAVGL++G V++ EP E W V PP E PT+ S G A D
Sbjct: 1073 HPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASD 1127
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1726 (612.6 bits), Expect = 2.4e-269, Sum P(2) = 2.4e-269
Identities = 361/737 (48%), Positives = 483/737 (65%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+ L G+W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M ELK++IEANP+ + KL FPS K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQ-------LQETDF--SGQSSESNALPPQTTQSPS 231
NWQH C NP+PNPDI TLF+DH C L + + + SN +P P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPF 239
Query: 232 SWNFSSSMLTDSAVSFVAL---SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVT 288
N + + ++ ++A S S P+ P ++E R + +
Sbjct: 240 QSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMD 299
Query: 289 YPGVSLKNIPDYSPKSSLKKEMF---QSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPV 345
Y + + + E+ S S D P+ V T+ +GS +SMDFHP
Sbjct: 300 YQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV-ISMDFHPS 358
Query: 346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405
HTLL VG + G+ LW+V S +K+ FK+W++ ACS++F+ ++V++P +SV RV WS
Sbjct: 359 HHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWS 418
Query: 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465
PDG+LLGV+++KH++ +YAY G SD RQ LEIDAHVG VNDLAF+ P KQ+ V+TCGDDK
Sbjct: 419 PDGNLLGVSFTKHLIHVYAYQG-SDLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDK 477
Query: 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525
IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD++G+RVDY
Sbjct: 478 LIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDY 536
Query: 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585
DAPG CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G + + S VV
Sbjct: 537 DAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKK--SAGVVQ 594
Query: 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645
FDT +++ LA G+D+ IK W+M+ LLT ++A GGLP PR+ FNK+G LLAV +N
Sbjct: 595 FDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNG 654
Query: 646 IKILETPES-NSVDAAGVLSDNLRKLSVN-PISTVTGAGIANGSVSVNE--DPKEDVKPE 701
KIL + ++ A S K S++ +ST A + ++ E D +P
Sbjct: 655 FKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPT 714
Query: 702 I---SVEAENKSEVEKP 715
+EA +++ +EKP
Sbjct: 715 PIPNGIEAMSRT-MEKP 730
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 8.2e-86, Sum P(2) = 8.2e-86
Identities = 132/365 (36%), Positives = 198/365 (54%)
Query: 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 779
PS+C +L+LP KI+RLTY+ G I ALA + H +W W + E
Sbjct: 375 PSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQNEFCKE-NVYPK 433
Query: 780 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 839
PRL+QP+ G + M N+ S Q++ CFA+ +YLFS SGG I+++ + F+ + +
Sbjct: 434 PRLHQPQSG-KTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEKVASF 489
Query: 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899
P+P AT F P D ++A+G+DD +I I+ S +V KLEGH +++T L FS N
Sbjct: 490 GSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFN 547
Query: 900 ILVSSGGDAQIFVWDVDGWGIQTCR-SLQTPDGVMTLAPSE--THIQFHKDQTRFLLVHE 956
+LVSS D ++ +W W T + S + L + THIQF Q L+VH+
Sbjct: 548 VLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHD 607
Query: 957 THLAIYEAEELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
+ +YE L C QW P +S P I+ AT+S D +++ F G++ I ++ C+
Sbjct: 608 GWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQ 667
Query: 1016 ILSTAYLRPTTS--CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1073
I T++ + +TS L VYP +AAHP P Q + GL+NG+V V++P G W P
Sbjct: 668 INLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-WGEAAPL 726
Query: 1074 EIVGD 1078
E GD
Sbjct: 727 EDNGD 731
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 168/701 (23%), Positives = 298/701 (42%)
Query: 300 YSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFH--PVQHTLLLVGTNVG 357
+SP+ S+ + +F ++ + +S PK V QT S+ +++ H PV+ +
Sbjct: 711 FSPEGSITRRIF-NYNLSGWSQLPK-VEQTW---SAEQQTLENHLGPVESVVFSPDGKQL 765
Query: 358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417
+G +D K+WD A L +T L G +V + +SPDG LL
Sbjct: 766 VSGSYD---------DTVKIWD-PATGELLQT-LDGHSG-TVESLAFSPDGKLLASGSYD 813
Query: 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477
+ + L+ G + Q E H ++ +AF+ K+++ + DD TIK+WD TG
Sbjct: 814 NTIDLWDSATG-ELLQTFE--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGEL 868
Query: 478 TYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTR 534
+ + H V S+ P K + S S+D IK W + + G G +
Sbjct: 869 QQTLDSHSQSVRSVAFSPDGK----LLASSSLDSTIKVW--NPATGELQQSLEGRSGWVK 922
Query: 535 -MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 593
+A+S +G++L S G+ K WN + G + +T +G SV V F Q+
Sbjct: 923 SVAFSPDGKKLAS-GSEKNTVKL---WNPATGELLQTLEG---HSQSVRSVAFSPDGKQL 975
Query: 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI--LET 651
++ D IK+W+ +L T G L + F+ +G L +++N IK+ L T
Sbjct: 976 ASSSSDTTIKLWNSTTGELQQTFK-GHDLWIRA-VAFSPDGKHLVSGSDDNTIKLWDLAT 1033
Query: 652 PE--------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN-EDPKEDVK--- 699
E S SV A D+ + S + ST+ A G + E + V+
Sbjct: 1034 SELQQSLEDHSRSVHAVAFSPDDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVT 1093
Query: 700 --PEISVEAENKSEVEKPLFARP--SECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755
P+ + A N + L+ P E Q L +++ + + ++ G+ + + +
Sbjct: 1094 FSPDGKLLASNSYDGTIKLW-NPLTGELQQTLTG---RSDWVDSVAFSPDGKQLASGYYD 1149
Query: 756 GVHLMWRWPRNDLTLSTEA-TTKVPPRLYQP-----RHGPQFMVNDTTDSNSQEAVPCF- 808
+W +L + E + ++ ++ P G D + E + F
Sbjct: 1150 STIKLWDSATGELLQTLEGHSDRIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFE 1209
Query: 809 ---------ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 858
A S + L S+S G I L+ +T + + T+ P +A S+AF+P N +
Sbjct: 1210 GHSKWVESVAFSPDGKLLASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRL 1269
Query: 859 IAIGMDDSTILIYNARSSEVISKLEGHSKRV---TGLVFSDALNILVSSGGDAQIFVWDV 915
++ + D+ I ++ + E++ L+GHSK V TG S L+ + + +I +W
Sbjct: 1270 ASVDIFDTKI--WDPATGELLQALKGHSKWVWSRTGAGISIFLDQWLCLQ-EKRI-LWLP 1325
Query: 916 DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
+ C S+ DGV+ L S + F + RFL+ E
Sbjct: 1326 QSYQ-PFCISVN--DGVLVLGHSSGRVSFIQGP-RFLIESE 1362
|
|
| MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 64/264 (24%), Positives = 108/264 (40%)
Query: 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486
G D + H + FS CKQI+ T D + +W +R Y + GH
Sbjct: 4 GLEDPILERSFKGHKAAITSADFSPNCKQIA--TASWDTFLMLWSLKPHARAYRYVGHKD 61
Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546
V SL + N+ + S S D ++ W+ D G ++ A + +SA+G+ L
Sbjct: 62 VVTSLQFSPQGNL--LASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLV- 118
Query: 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
T+ E +S V W+ +R L + V F I++ +D IKIWD
Sbjct: 119 --TASEDKSIKV-WSMFR---QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172
Query: 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 666
Q + G + FN NGT +A +++ +KI + + + V S
Sbjct: 173 TTNKQCVNNFSDSVGFANF--VDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG 230
Query: 667 LRKLSVNPISTVTGAGIANGSVSV 690
+ LS +P+ ++G+V +
Sbjct: 231 VNCLSFHPLGNSLVTASSDGTVKM 254
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 53/218 (24%), Positives = 103/218 (47%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
|
|
| TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 9.9e-14, Sum P(3) = 9.9e-14
Identities = 54/204 (26%), Positives = 96/204 (47%)
Query: 7 DLVFLILQFLNEEGFTESAHMLERESRFYF---DMKFFEDMILDGKWEDVEQYLSSF--T 61
+ + +++Q L GF SA LE ES+ + D +F E +L G W+ Q L
Sbjct: 19 EFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDN 78
Query: 62 KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 121
+DD R +T +Y + KQ E L D++ ALN+L+K G E++ + ++
Sbjct: 79 SMDDTR-NTALYL-VFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYS 136
Query: 122 DDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLN 181
++ E+ + L R+ +++EL+++I PI+ I +RL L+ ++
Sbjct: 137 KEMESGEVDNCL---VLDLRRKLLVELEKLIPL-PIV--------IPERRLEHLVETAVM 184
Query: 182 WQHVHCANPQPNPDINTLFVDHVC 205
Q C + D +L+ DH C
Sbjct: 185 DQIDTCMYHN-SCDAVSLYKDHCC 207
|
|
| FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 54/218 (24%), Positives = 104/218 (47%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ + +
Sbjct: 74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
++ DDKT+KVW+ TG + +GH Y C + + I S S D ++ W
Sbjct: 130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVR 186
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 187 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 240
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 241 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 278
|
|
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 53/218 (24%), Positives = 103/218 (47%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WV90 | TPR1_ARATH | No assigned EC number | 0.5442 | 0.9633 | 0.9392 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1092 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-27 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 1e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-06 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 1e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-27
Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 47/324 (14%)
Query: 331 IEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT 389
++G + + F P L TG D KVWD+ +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLA--------TGSGD---------GTIKVWDL--ETGELLR 45
Query: 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 449
L V V S DG+ L S ++L+ G R + H V+ +AF
Sbjct: 46 TLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAF 101
Query: 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 509
S P +I + + DKTIKVWD TG + GH V S+ + F+ S S DG
Sbjct: 102 S-PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS--PDGTFVASSSQDG 157
Query: 510 KIKAWLYDSLGARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
IK W D + G +A+S +G +L S + G L W+ S G
Sbjct: 158 TIKLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKL--WDLSTGKC 211
Query: 568 KRTYQGLQLQH-NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
T +G H N V+ V F + + +D I++WD+ + + T+ N
Sbjct: 212 LGTLRG----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG----HTNS 263
Query: 627 --RICFNKNGTLLAVIANENRIKI 648
+ ++ +G LA + + I+I
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.4 bits (220), Expect = 2e-18
Identities = 89/415 (21%), Positives = 162/415 (39%), Gaps = 29/415 (6%)
Query: 291 GVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL 350
G SL ++ S SS + + S P + L S S+ F P LL
Sbjct: 22 GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LL 80
Query: 351 LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409
L G++ G LWD+++G+KL +L SV+++ SPDG+
Sbjct: 81 LSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHDSSVSKLALSSPDGN 123
Query: 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469
+ +A S + + + + ++ H +V LAFS P ++ D TIK+
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKL 182
Query: 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529
WD TG + GH PV SL + S S DG I+ W + +
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLSTGKLLRSTLSGH 241
Query: 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589
++S +G L S + + + + S L +SV V F
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT------LSGHSSSVLSVAFSPD 295
Query: 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKI 648
+ + D +++WD+ +LL+++ G + F+ +G+LL +++ I++
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355
Query: 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703
+ + S N+ +S +P V +G +G+V + + + +
Sbjct: 356 WDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 26/213 (12%)
Query: 805 VPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863
V C A S + L + SG G I ++ + T + + T+ + +A + D +A G
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70
Query: 864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 923
D TI +++ + E + L GH+ V+ + FS IL SS D I VWDV+ T
Sbjct: 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TG 125
Query: 924 RSLQT----PDGVMTLAPSETHIQF----HKDQTRFLLVHETHLAIYEAEELTCLKQWFP 975
+ L T D V ++A S F +D T + +++ C+
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGT----IK-----LWDLRTGKCVAT-LT 174
Query: 976 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
+ ++ FS D + +S DGT+ + + S
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 18/208 (8%)
Query: 802 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
V A S + L S+S I ++ V T K + T+ + S+AF+P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWG 919
D TI +++ R+ + ++ L GH+ V + FS L+SS D I +WD+ G
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPI 976
+ T R +GV ++A S +LL + + +++ C++
Sbjct: 212 LGTLRG--HENGVNSVAFS---------PDGYLLASGSEDGTIRVWDLRTGECVQT-LSG 259
Query: 977 SSVPISQATFSCDCRMVFTSFVDGTLSI 1004
+ ++ +S D + + + DGT+ I
Sbjct: 260 HTNSVTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-12
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 34 FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAK 92
+ + K ++IL G W++ ++LSS R S K+ FE+RKQ F E + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 802 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
V A S + L S+S G I L+ + T K + T+ S+AF+P + +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236
Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
G +D TI +++ R+ E + L GH+ VT L +S L S D I +WD
Sbjct: 237 -GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (156), Expect = 1e-10
Identities = 81/459 (17%), Positives = 174/459 (37%), Gaps = 72/459 (15%)
Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPVY 489
L + H ++ +AFS P ++ +++ D TIK+WD G + H + V
Sbjct: 56 LSSLLLRGHEDSITSIAFS-PDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS 113
Query: 490 SLCPHAKENIHFIFSIS-VDGKIKAW-LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547
L + + + + S +DG +K W L + T +A+S +G+ L S
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173
Query: 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWD 606
+ + W+ G T G + VS + F I + D I++WD
Sbjct: 174 SSLD---GTIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227
Query: 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SD 665
++ +LL + +G ++ F+ +G+LLA +++ I++ + S+S+ S
Sbjct: 228 LSTGKLLRSTLSG--HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725
++ ++ +P + +G ++G+V + + + ++++
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE----------------- 328
Query: 726 LLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 784
+S L+++ +G + + +G +W + E
Sbjct: 329 ---------GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----------- 368
Query: 785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPS 843
V + S + + S S G + L+ + T + + +
Sbjct: 369 ----------------GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412
Query: 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882
TSL F+P D +A G D+TI +++ ++S
Sbjct: 413 SRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.0 bits (154), Expect = 2e-10
Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 13/222 (5%)
Query: 811 SKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 869
+ S+ G + L+ + T K I T+ S + TSLAF+P + + D TI
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181
Query: 870 IYNARSSEVISKLEGHSKRVTGLVFS-DALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQ 927
+++ R+ + +S L GH+ V+ L FS D ++ S D I +WD+ +++ S
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241
Query: 928 TPDGVMTLAPSETHIQFHKDQTRFLLVHETH-LAIYEAEELTCLKQWFPISSVPISQATF 986
+ V + F D + + +++ + L + S + F
Sbjct: 242 SDSVVSS---------FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292
Query: 987 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028
S D +++ + DGT+ + + ++ + + P +S
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.2 bits (152), Expect = 4e-10
Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 10/218 (4%)
Query: 805 VPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 862
V A S + L ++ G I L+ + T K + + + + +F+P D +++A G
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASG 259
Query: 863 MDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 921
D TI +++ RS S ++ L GHS V + FS +L S D + +WD++ +
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319
Query: 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI 981
+ +L+ +G + + F D + + I + T +
Sbjct: 320 SSLTLKGHEG------PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV 373
Query: 982 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019
+FS D R+V + DGT+ + + S + +
Sbjct: 374 LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.6 bits (148), Expect = 1e-09
Identities = 83/472 (17%), Positives = 173/472 (36%), Gaps = 76/472 (16%)
Query: 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515
I ++ D + + D + GH + S+ + + S S DG IK W
Sbjct: 40 ILLLALLSDSLVSLPD----LSSLLLRGHEDSITSIAFS--PDGELLLSGSSDGTIKLWD 93
Query: 516 YDSLGARVD--YDAPGLGCTRMAY-SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
D+ + +++A S +G + +S +G + W+ S
Sbjct: 94 LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG--TVKLWDLSTPGKLIRT- 150
Query: 573 GLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631
L+ SV+ + F + + D IK+WD+ + L+T+ + + F+
Sbjct: 151 -LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS--LAFS 207
Query: 632 KNGTLLAVIANENR-IKI--LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688
+G LL + + I++ L T + +G + S + +G+ ++G++
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS--SDGTI 265
Query: 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 748
+ ++++ T + +
Sbjct: 266 RL---------------------------------------WDLRSSSSLLRTLSGHSSS 286
Query: 749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808
+ ++A + + + S++ T ++ + G T + V
Sbjct: 287 VLSVAFSPDGKLL------ASGSSDGTVRL----WDLETGKLLSS--LTLKGHEGPVSSL 334
Query: 809 ALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866
+ S + + L S G I L+ + T K + T+ S S++F+P D V++ G D
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDG 392
Query: 867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918
T+ +++ + ++ L+GH+ RVT L FS L S D I +WD+
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.7 bits (130), Expect = 2e-07
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 27/203 (13%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
+TL SSS +S+ F P LL G++ G LWD+ +G+ L K
Sbjct: 278 RTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK----------- 325
Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVND 446
V+ + +SPDGSLL S ++L+ + L+ NV
Sbjct: 326 ------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL----RTGKPLKTLEGHSNVLS 375
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
++FS + +S + D T+++WD TGS + +GH + V SL + S S
Sbjct: 376 VSFSPDGRVVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS--LASGS 431
Query: 507 VDGKIKAWLYDSLGARVDYDAPG 529
D I+ W + V + G
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590
G T +A+S +G+ L + + W+ G + RT +G V V
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGT----IKVWDLETGELLRTLKGHTG---PVRDVAASADG 63
Query: 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKIL 649
+ + D I++WD+ + + T+ G + F+ +G +L+ + + IK+
Sbjct: 64 TYLASGSSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690
+ + +D + ++ +P T + +G++ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941
L+GH+ VT + FS +L + GD I VWD++ + T V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPV-------RD 56
Query: 942 IQFHKDQTRFLLVHETHLA-IYEAEELTCLKQWF----PISSVPISQATFSCDCRMVFTS 996
+ D T +++ E C++ +SSV FS D R++ +S
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-----AFSPDGRILSSS 111
Query: 997 FVDGTLSIHE 1006
D T+ + +
Sbjct: 112 SRDKTIKVWD 121
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 40/180 (22%)
Query: 321 DFPKTVAQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---- 375
D T + G + S+ F P T + + G LWD+ +G+ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK--CVATLTGHT 177
Query: 376 ------------------------KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411
K+WD+ S +R VN V +SPDG LL
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
++++ G + H +V LA+S K+ + + D TI++WD
Sbjct: 235 ASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKR--LASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-06
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
S E++ L+GH+ VT + FS L S D I +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 4 LNKDLVFLILQFLNEEGFTESAHMLERESRF 34
+L LIL++L G+ E+A L++ES
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
+++ L+GH+ VT + FS N+L S D + VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
+ + H G V +AFS + + DD T++VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
+ H G V +AFS K + + DD TIK+WD
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 849 LAFNPHDNNVIAIGMDDSTILIYN-------ARSSEVISKLEGHSKRVTGLVF-SDALNI 900
+AFNP D + +D TI+ + S+ I L+GH+K+V + F A+N+
Sbjct: 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140
Query: 901 LVSSGGDAQIFVWDVD 916
L S+G D + VWDV+
Sbjct: 141 LASAGADMVVNVWDVE 156
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1092 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.98 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.98 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.87 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.81 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.79 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.79 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.78 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.77 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.76 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.75 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.74 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.73 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.69 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.65 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.64 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.63 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.62 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.62 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.61 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.61 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.6 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.6 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.59 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.56 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.56 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.55 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.55 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.53 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.53 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.53 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.53 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.5 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.5 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.5 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.48 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.48 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.46 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.46 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.44 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.43 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.42 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.4 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.38 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.38 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.38 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.37 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.36 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.35 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.34 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.33 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.31 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.3 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.29 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.27 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.22 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.18 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.17 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.16 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.06 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.03 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.03 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.97 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.95 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.94 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.94 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.94 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.89 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.88 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.87 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.86 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.86 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.85 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.78 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.78 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.76 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.75 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.75 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.71 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.7 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.68 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.67 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.66 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.65 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.65 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.64 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.6 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.6 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.58 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.56 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.54 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.51 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.5 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.5 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.49 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.47 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.47 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.46 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.43 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.42 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.41 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.41 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.4 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.4 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.39 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.39 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.35 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.33 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.32 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.31 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.24 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.18 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.13 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.11 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.09 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.09 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.09 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 98.05 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.01 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.93 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.93 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.93 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.92 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.92 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.91 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.91 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.86 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 97.86 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.85 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.85 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.83 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.74 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.73 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.71 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.69 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.68 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.66 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.65 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.65 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.65 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.6 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.59 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.58 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.48 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.43 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.41 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.39 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.38 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.34 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.34 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.33 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.31 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.16 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.1 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.08 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.07 | |
| PRK10115 | 686 | protease 2; Provisional | 97.07 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.05 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.03 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.98 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.95 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.91 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.86 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.84 | |
| PRK10115 | 686 | protease 2; Provisional | 96.8 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.8 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.78 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.75 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.7 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.67 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.6 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.57 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.55 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.5 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.49 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.49 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.46 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.46 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.37 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.18 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.18 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.06 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.01 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.97 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.88 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.8 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.68 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.63 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.52 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.48 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 95.47 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.44 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.35 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.15 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.02 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.0 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.98 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.84 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.76 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.72 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.51 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.42 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.18 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.05 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.92 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.9 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.56 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.54 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.46 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.3 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 93.26 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.97 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.96 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 92.89 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.83 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 92.77 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.33 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 92.27 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 92.23 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.02 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 91.53 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.24 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.23 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 91.21 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.13 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.07 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 91.02 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 90.76 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.39 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.38 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 90.21 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 90.17 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.14 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 90.11 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 90.03 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.79 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 89.67 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 89.62 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 89.56 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 89.43 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 89.3 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 89.12 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.09 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 88.86 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 88.85 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.51 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 88.41 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.36 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.69 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 87.65 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.59 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 87.28 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 87.22 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 87.14 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 86.92 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 86.78 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 86.73 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 86.59 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 86.49 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 86.28 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 86.28 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 86.12 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.05 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.0 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 85.91 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 85.6 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 84.94 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 84.57 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 84.48 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 84.22 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 83.99 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 83.92 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 83.26 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 83.06 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 82.72 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 82.17 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-72 Score=555.26 Aligned_cols=493 Identities=21% Similarity=0.315 Sum_probs=416.8
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhh
Q 001363 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1092)
+-|++|+++|+|+.+||.+|+.+||.|||+.+. ++.|.++++.|+|+.++..+..+. +++.....++.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999775 899999999999999999998874 3334445669999999999
Q ss_pred hhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001363 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 161 (1092)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 161 (1092)
||++..|....|+.+||+...++. ++.++|++|+.-+..++.....+... .......|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999988887 57788999988777655433333222 122356899999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCc
Q 001363 162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 241 (1092)
Q Consensus 162 ~~~~~~p~~rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 241 (1092)
+|++||++||+||++||+++|.||| +.+..|||.||.|.+ .| +|+++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~q------ip~qt--------------- 216 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQ------IPSQT--------------- 216 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------cc------CCchh---------------
Confidence 9999999999999999999999999 455589999999988 44 34433
Q ss_pred CcccccccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCccccC
Q 001363 242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321 (1092)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~~ 321 (1092)
T Consensus 217 -------------------------------------------------------------------------------- 216 (519)
T KOG0293|consen 217 -------------------------------------------------------------------------------- 216 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEE
Q 001363 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~ 401 (1092)
.++|..|+++||.+.||++|+ +||+++.|.+..||++.....+.. ...+.+|..+|..
T Consensus 217 -----~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y 274 (519)
T KOG0293|consen 217 -----WQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY 274 (519)
T ss_pred -----hhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence 366889999999999999999 699999999999999876654321 1238899999999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001363 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+.||||.+||++|+.+..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..||++ |..+..+
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcc
Confidence 9999999999999999999999999998766332 24668899999999999 79999999999999954 5556666
Q ss_pred ecCC-cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001363 482 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 482 ~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
++-. ..|.++++ +.||+++++.+.|..|++++..+...+.. .....+|+++++|.||+++++.-. +..+.+|
T Consensus 350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~----~qei~LW 422 (519)
T KOG0293|consen 350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ----DQEIHLW 422 (519)
T ss_pred cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence 6544 45888888 55889999999999999999887655543 334568999999999999988765 4459999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV 639 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~ 639 (1092)
|+.....++.+.||.+....|.++.-..+..++++||+|+.|+||+..+|+++..+.+|.. .|++|+|+| +..++|+
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFAS 500 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhc
Confidence 9999999999999996666677765566678999999999999999999999999998754 699999999 6678999
Q ss_pred EeCCCeEEEEECCC
Q 001363 640 IANENRIKILETPE 653 (1092)
Q Consensus 640 ~~~dg~i~iw~~~~ 653 (1092)
+++||+|+||-...
T Consensus 501 asDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 501 ASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCeEEEecCCc
Confidence 99999999997653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-62 Score=468.46 Aligned_cols=493 Identities=18% Similarity=0.285 Sum_probs=405.1
Q ss_pred chhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHH
Q 001363 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRK 78 (1092)
Q Consensus 3 ~~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 78 (1092)
+-+.||||||.|||+|+.+++++++||+|+++++| ++.|-+.|.+|+||.++..+++| +++.+.+..+||
T Consensus 5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYE 78 (508)
T KOG0275|consen 5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYE 78 (508)
T ss_pred eecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHH
Confidence 34679999999999999999999999999999998 89999999999999999999998 666667899999
Q ss_pred hhhhhhccCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCc
Q 001363 79 QNFFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANP 156 (1092)
Q Consensus 79 q~~~Ell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~ 156 (1092)
|..+||+|.++...|..+||+- ..-|.+.+|++|-+|..||..+.++..+++. +..++.|+. .|.+.+..++
T Consensus 79 qivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa---~IAQ~ls~EV 152 (508)
T KOG0275|consen 79 QIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRA---VIAQALSGEV 152 (508)
T ss_pred HHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHH---HHHHHhcCce
Confidence 9999999999999999999973 3335667899999999999999998877733 255777764 3444444433
Q ss_pred ccccccCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccC
Q 001363 157 ILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFS 236 (1092)
Q Consensus 157 ~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 236 (1092)
- .+||+||..||+||++||.++.+.|..+ ...||. .+
T Consensus 153 ~--------VVppSRLlaLlGQaLKWQqHQGLLPPGt--~iDLFR------------------------Gk--------- 189 (508)
T KOG0275|consen 153 H--------VVPPSRLLALLGQALKWQQHQGLLPPGT--TIDLFR------------------------GK--------- 189 (508)
T ss_pred E--------EcChHHHHHHHHHHhhhHhhcCCCCCCc--eeeecc------------------------ch---------
Confidence 2 3899999999999999999987766411 012221 10
Q ss_pred CCCCcCcccccccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCC
Q 001363 237 SSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316 (1092)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~ 316 (1092)
. .+| ...|..||.+..
T Consensus 190 A-----------------------A~K-------------------~~~Ee~~Pt~l~---------------------- 205 (508)
T KOG0275|consen 190 A-----------------------AMK-------------------DQEEERYPTQLA---------------------- 205 (508)
T ss_pred h-----------------------hhh-------------------hhHhhhchHHhh----------------------
Confidence 0 000 001223444432
Q ss_pred ccccCCCcceeeec-ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC
Q 001363 317 TSFSDFPKTVAQTL-IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1092)
Q Consensus 317 ~~~~~~p~~~~~~l-~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h 395 (1092)
+.+ -|.+..+.|..|||||+ +|++|+.||.|.|||..+|+..+...++.-| -+--+
T Consensus 206 -----------r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----------~fMMm 262 (508)
T KOG0275|consen 206 -----------RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----------NFMMM 262 (508)
T ss_pred -----------hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhc-----------ceeec
Confidence 222 24566889999999999 6999999999999999999988765554322 14447
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
..+|.|+.||.|...||+|+.||.|++|.+.+|.+++.+. ++|+..|+|+.||.|+. .+++++.|.+++|.-+++|
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSG 338 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccc
Confidence 8999999999999999999999999999999999988532 38999999999999999 6999999999999999999
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEccCC-CEEEEEecCCC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSANG-RRLFSCGTSKE 552 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~dg-~~l~~~~~~~~ 552 (1092)
++++.|+||...|+...| .+||..+++++.||+|++|+..+.++..++...+ .+|.++..-|.+ ..+++|..
T Consensus 339 K~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr--- 413 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR--- 413 (508)
T ss_pred hhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC---
Confidence 999999999999999998 5688999999999999999999999888776543 467888777754 56777754
Q ss_pred CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
.+++++.++ .|+.++.+.......+...+++.+|.|.++++.++|+.++.|...+|.+-.++..|.. .+..++-+|
T Consensus 414 -sntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHP 489 (508)
T KOG0275|consen 414 -SNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHP 489 (508)
T ss_pred -CCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCc
Confidence 566999886 4778888876655567788889999999999999999999999999999999988754 578899999
Q ss_pred CCCEEEEEeCCCeEEEEE
Q 001363 633 NGTLLAVIANENRIKILE 650 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~iw~ 650 (1092)
..+++|+-+.||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=500.25 Aligned_cols=576 Identities=18% Similarity=0.249 Sum_probs=494.8
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCee-EEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCC
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~ 418 (1092)
++|+++|+ +|++... ..|.+-|+.++... ... -......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 6777654 45899999999873 211 223567899999999999999999999
Q ss_pred EEEEEEccCCCcccceEEEcc-cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccC
Q 001363 419 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 497 (1092)
.+++|++.+|+.++ .++. |++||.-++|+|.|. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 5566 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc
Q 001363 498 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576 (1092)
Q Consensus 498 ~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 576 (1092)
+-..|++|..|+++++||+..... ...+..|...|++++|++|+..+++++. +..+.+||..+-+..++++..+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999996555 6788889999999999999999999987 6679999998877777776644
Q ss_pred cCCceEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 577 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 577 ~~~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
.+.++.+-++ +.++++++.+|.+++||.+++++........ ...+..+...+....++..+.|..+.++|.
T Consensus 235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence 6777778777 6799999999999999999998877665443 233666666666667778888999999999
Q ss_pred CCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCc
Q 001363 652 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 731 (1092)
Q Consensus 652 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~ 731 (1092)
++.+....+-|..+.|..+.+- .|+.+.++.++..+.+|+++... ..|..+ .
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~~---~~c~ii----~ 362 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLPT---SYCQII----P 362 (775)
T ss_pred cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecCC---CceEEE----e
Confidence 9999999999999999988886 57889999999999999997552 334322 4
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001363 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s 811 (1092)
+|...|.++....+|-.+++++.|..+++|.++.+.. .....-...+|.+.|.+++++
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~----------------------~~~~~a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS----------------------KSLCVAQANGHTNSVGAVAGS 420 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcc----------------------hhhhhhhhcccccccceeeec
Confidence 6999999999888899999999999999999843211 000001122599999999998
Q ss_pred cCC-CEEEEEe-CCeEEEEEcCCcee---------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeE
Q 001363 812 KND-AYLFSAS-GGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1092)
Q Consensus 812 ~dg-~~l~~~s-dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1092)
..+ .++++++ |+++++|++...+. ..+...|...|++++++| +++++|||+.|++.+||+++......
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence 766 5777777 89999999976221 112356899999999999 89999999999999999999999999
Q ss_pred eeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcE
Q 001363 881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 959 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i 959 (1092)
+|.||...|.++.|+|..+.+||+|.|++|+||.+++. .++++++||.. .|..+.|-.+|+.|++ +.||-+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----SClkT~eGH~~---aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----SCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-----eeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence 99999999999999999999999999999999999994 48999999987 8999999999999998 799999
Q ss_pred EEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001363 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
++|++.+++|... +.+|..+|++++-++++.+++||+.||.|.+|.=.+
T Consensus 572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999999998 779999999999999999999999999999996444
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-56 Score=476.93 Aligned_cols=586 Identities=13% Similarity=0.182 Sum_probs=478.0
Q ss_pred CCcCCCCCCCchhhhcccccCCccccCCCcce-e-eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEE
Q 001363 295 KNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV-A-QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI 372 (1092)
Q Consensus 295 ~~~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~-~-~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~ 372 (1092)
|.-..|+|++..+...+.... ..++.-+... + ..-.+-.+.+++++.+||++ .|++++...-+++|++.+|+.++.
T Consensus 22 GG~~~~s~nG~~L~t~~~d~V-i~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs 99 (775)
T KOG0319|consen 22 GGPVAWSSNGQHLYTACGDRV-IIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS 99 (775)
T ss_pred CCceeECCCCCEEEEecCceE-EEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh
Confidence 345778888888776665310 0111112222 1 12234567999999999998 688889999999999999988764
Q ss_pred eeeeeeecccccceeeEeeecC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec
Q 001363 373 RNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451 (1092)
Q Consensus 373 ~~~~~~d~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 451 (1092)
++. |++||.-++|+|.|.+||+|+.|+.++|||+..+.+.. .|+||.+.|.++.|.|
T Consensus 100 -------------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~ 157 (775)
T KOG0319|consen 100 -------------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHP 157 (775)
T ss_pred -------------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCC
Confidence 444 99999999999999999999999999999999986555 7999999999999999
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC
Q 001363 452 PCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL 530 (1092)
Q Consensus 452 d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 530 (1092)
+-.+.+|++|+.|+++++||+.+... +..+..|...|+++++.+ |+..+++++.|..+.+||+...+........ .
T Consensus 158 ~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e 234 (775)
T KOG0319|consen 158 HWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-E 234 (775)
T ss_pred ccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-h
Confidence 98876899999999999999996554 888999999999999955 6789999999999999999655554444332 2
Q ss_pred ceEEEEEccC-----CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 531 GCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 531 ~i~~~~~s~d-----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1092)
.+.++.+-++ |.+++++|. ++.+++||..++++........ ...+..+...+....++..+.|..+.++
T Consensus 235 ~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~ 308 (775)
T KOG0319|consen 235 SLESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLY 308 (775)
T ss_pred heeeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccceEEEE
Confidence 4566667666 668888875 7779999999998876665443 2336666677777788888899999999
Q ss_pred ECCCCceEEEEeCCCCCCCCceEEEc-cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccccc
Q 001363 606 DMNKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684 (1092)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 684 (1092)
|.++.+....+-+.. ..|..|+|- |+.+++|++++.+.+++|+..+..+. .+.+|.+.|.++...
T Consensus 309 d~~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~----------- 374 (775)
T KOG0319|consen 309 DEDELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW----------- 374 (775)
T ss_pred EccccEEehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec-----------
Confidence 999999888887543 468888875 68899999999999999998887666 889999999988843
Q ss_pred CCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCc-EEEEeecCCeeEEEee
Q 001363 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRW 763 (1092)
Q Consensus 685 ~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~~w~~ 763 (1092)
..|-++++++.|.++++|.++.+.. .........+|.+.|.+++++..+. .+++++.|+++++|++
T Consensus 375 -----------~~g~llat~sKD~svilWr~~~~~~--~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 375 -----------SSGDLLATGSKDKSVILWRLNNNCS--KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred -----------ccCcEEEEecCCceEEEEEecCCcc--hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 4567899999999999999842221 1112223367999999999987664 5678889999999999
Q ss_pred cCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCC
Q 001363 764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 842 (1092)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~ 842 (1092)
+..+.... +. ..........|...|.|++++|+.+++|+|+ |.+.+||+++.+....++.+|
T Consensus 442 ~~s~~~~~--------~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH 504 (775)
T KOG0319|consen 442 PKSKETAF--------PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH 504 (775)
T ss_pred CCcccccc--------cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC
Confidence 87321100 11 1111122335999999999999999999999 899999999999999999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001363 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 922 (1092)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~ 922 (1092)
...|.++.|+| ..+.+||+|.|++|+||.+.+..++++|.||+..|..+.|-.+|+.|+|++.||.|++|++++++
T Consensus 505 ~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e--- 580 (775)
T KOG0319|consen 505 TRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE--- 580 (775)
T ss_pred ccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh---
Confidence 99999999999 88999999999999999999999999999999999999999999999999999999999999966
Q ss_pred eeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCC
Q 001363 923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 966 (1092)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~ 966 (1092)
+..+++.|.. .|.+++.++.+.++++ +.|+.|.+|.-.+
T Consensus 581 --C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 581 --CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred --hhhhhhhccc---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 7888888886 8999999999999998 6899999996443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=427.07 Aligned_cols=575 Identities=15% Similarity=0.189 Sum_probs=462.6
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
.-+.-.|.|+.++.+.+ ..|.+-++++...... +++|...++-..|||.|-|+|+|...
T Consensus 22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred eEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCc
Confidence 34555788887777755 6788888887765433 77899999999999999999999999
Q ss_pred CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE--eCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001363 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
|+|+|||....+.+. ..++..-.++|..++|++|+++ ++.. +.++..+++-+++|..+..+.||...|+++.|-|
T Consensus 81 G~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kp 157 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKP 157 (603)
T ss_pred CcEEEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccC
Confidence 999999998743322 2256678899999999999995 4433 3444455555568889999999999999999987
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
+.. -++++|+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++++. ++.+++||-.+|+.+..+....
T Consensus 158 sRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 158 SRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred CCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCC
Confidence 654 57999999999999987777777778888889999999999999999987 6679999999999999999655
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC-CCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP-ENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.|.+.|.+++|+||+.++++++.|.+++|||+.+.+++.++....... ....+.|. ...|++.+.+|.|.+++....
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 566999999999999999999999999999999999999998765421 12234444 678999999999999999999
Q ss_pred ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCcccc
Q 001363 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 734 (1092)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~ 734 (1092)
..+..+.+|...|++++.+ +|++++.+++.||.|.-|+...+... .+....|.
T Consensus 311 ~~~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~-----~~~g~~h~ 363 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSD-----RLAGKGHT 363 (603)
T ss_pred ChhheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCcccc-----cccccccc
Confidence 9999999999999999996 78899999999999999998754433 23334599
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001363 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
..|.+++.+..+. +++.+.|.++++.++..+...... . .+ -.....+++..+++
T Consensus 364 nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 364 NQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDG 417 (603)
T ss_pred ceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCC
Confidence 9999999988776 788888889988776543221110 0 11 12233488999998
Q ss_pred CEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee--eEeeccccCCeEEE
Q 001363 815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGL 892 (1092)
Q Consensus 815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l 892 (1092)
.+++.+.++.|.+..-.++ +.... ..-...++|++| ++..+|+|+.||.|+||.+..+.. ...+..|.++|+++
T Consensus 418 ~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV 493 (603)
T ss_pred CEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE
Confidence 8888888766666552222 12222 344678999999 999999999999999999987653 34566799999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeee
Q 001363 893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLK 971 (1092)
Q Consensus 893 ~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~ 971 (1092)
++|||+.+||++...+.+.+||+.+++.... ... -|. ..|.+++|||++.++|+ +-|..|.||++.......
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~---FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i 566 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWA---FHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI 566 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceecc-eee---eee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence 9999999999999999999999999764221 111 122 37999999999999999 578999999998877666
Q ss_pred eeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 972 QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 972 ~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
....+|...|+.+.|-. ...|++.+.|..|++|++.
T Consensus 567 ~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 567 IIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence 66788988899999974 5678999999999999875
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-51 Score=433.55 Aligned_cols=612 Identities=17% Similarity=0.283 Sum_probs=460.0
Q ss_pred cCCCCCCCchhhhcccccCCccccCCCcceeeecc-cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeee
Q 001363 297 IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 375 (1092)
Q Consensus 297 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~ 375 (1092)
-+.|+|++..+...- .+...+.++.+....+|. .+...|++++.||+|. +|++....|...+-++.....++.+++
T Consensus 19 nl~ft~dG~sviSPv--GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f 95 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPV--GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF 95 (893)
T ss_pred cEEECCCCCEEEecc--CCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee
Confidence 466776644332211 123344555555555554 4556999999999998 666667889999999888777765443
Q ss_pred eeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc-----ccceEEEcccccceeEEEEe
Q 001363 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFS 450 (1092)
Q Consensus 376 ~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s 450 (1092)
+.+|.|+.|||||+++|+|..+ .+.||....... .....++.+|...|.++.|+
T Consensus 96 --------------------k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws 154 (893)
T KOG0291|consen 96 --------------------KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWS 154 (893)
T ss_pred --------------------cCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEec
Confidence 3789999999999999998654 699998764322 22344677899999999999
Q ss_pred cCCCcEEEEEEeCCCcEEEEECCCCce--eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001363 451 APCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1092)
Q Consensus 451 ~d~~~l~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 528 (1092)
.|.+ +|++|+.|.++++|+++..+- .+.+.+|.+.|.++-|. .|...+++.+.||.+.+|..+..-.... ...
T Consensus 155 ~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~-~~~ 229 (893)
T KOG0291|consen 155 DDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELD-KAE 229 (893)
T ss_pred cCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccc-ccc
Confidence 9999 899999999999999887665 57788999999988874 4567899999999999998764311110 000
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
.. .+|.--.-.-.+++....-..|-. ..+.+-.. ....|++.+|++..+.+++|-..|...+|.+.
T Consensus 230 kd--------~eg~~d~~~~~~~Eek~~~~~~~k----~~k~~ln~--~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 230 KD--------EEGSDDEEMDEDGEEKTHKIFWYK----TKKHYLNQ--NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred cc--------ccccccccccccchhhhcceEEEE----EEeeeecc--cccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 00 011000000000000000111211 00111111 12579999999999999999999999999999
Q ss_pred CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-CeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCc
Q 001363 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1092)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 687 (1092)
...+++.+..... .|..++|+..|.++|.|+.. |.+.||+......+
T Consensus 296 ~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV------------------------------ 343 (893)
T KOG0291|consen 296 DFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV------------------------------ 343 (893)
T ss_pred CceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeecccee------------------------------
Confidence 9999999986643 58999999999999999875 78889987754322
Q ss_pred eeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCC
Q 001363 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1092)
Q Consensus 688 ~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~ 767 (1092)
+...+|...+.+++++|||+++++|+.||.|++|+
T Consensus 344 ----------------------------------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn----- 378 (893)
T KOG0291|consen 344 ----------------------------------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN----- 378 (893)
T ss_pred ----------------------------------------eeccccccceeeEEECCCCcEEEeccCCCcEEEEe-----
Confidence 23345788899999999999999999999888866
Q ss_pred cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCC-C
Q 001363 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP-T 845 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~-~ 845 (1092)
..+|.|+.+++ +|...|+.+.|+..|+.+++.+ ||+|+.||+..++..+++..+.. .
T Consensus 379 -----------------~~SgfC~vTFt----eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q 437 (893)
T KOG0291|consen 379 -----------------TQSGFCFVTFT----EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ 437 (893)
T ss_pred -----------------ccCceEEEEec----cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCcee
Confidence 45677777766 3999999999999999999999 99999999999999999986653 5
Q ss_pred eEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001363 846 ATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 924 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~ 924 (1092)
..|++..| .|.++..|+.|. .|++|++++|+.+..+.||.++|.+++|+|++..|||+|.|++|++||+-...... .
T Consensus 438 fscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v-E 515 (893)
T KOG0291|consen 438 FSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV-E 515 (893)
T ss_pred eeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee-e
Confidence 68999999 899999999887 89999999999999999999999999999999999999999999999997642111 1
Q ss_pred eeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeecc-------------------CCCCCEEEE
Q 001363 925 SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP-------------------ISSVPISQA 984 (1092)
Q Consensus 925 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~-------------------~h~~~v~~l 984 (1092)
.++.. ..+..++|+|||+.||+ .-||.|.+||+..+..+..+-. ......+.+
T Consensus 516 tl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti 588 (893)
T KOG0291|consen 516 TLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI 588 (893)
T ss_pred eEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence 22222 14889999999999999 6899999999987655532110 125788999
Q ss_pred EEecCCCEEEEEECCCcEEEEEcCCCceEEeecccccc--------------------------------------CCC-
Q 001363 985 TFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL--------------------------------------RPT- 1025 (1092)
Q Consensus 985 ~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------------~~~- 1025 (1092)
++|+||.+|++||....|++|++.++.++.+|...... |..
T Consensus 589 ~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~ 668 (893)
T KOG0291|consen 589 CYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQ 668 (893)
T ss_pred EEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccc
Confidence 99999999999999999999999999998887621111 110
Q ss_pred ---Cccc----cccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1026 ---TSCL----HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1026 ---~~~~----~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
.... .|....+.|+| .++-+|++++.|. .||.+
T Consensus 669 ~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEGl-~IYsl 708 (893)
T KOG0291|consen 669 RGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEGL-LIYSL 708 (893)
T ss_pred cCCccccccCceEEEEEEEECC-CcCeeeeecccce-EEEec
Confidence 0111 46678899999 4888999999885 33443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=407.61 Aligned_cols=542 Identities=12% Similarity=0.201 Sum_probs=435.7
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....+.+|...++-..|||.|- ++|+|...|+|||||....+.+...+|++ -.++|..++|+
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~v-----------------~aG~I~Di~Wd 112 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQV-----------------LAGPIKDISWD 112 (603)
T ss_pred ceeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeeee-----------------cccccccceeC
Confidence 3567789999999999999996 79999999999999998866666555442 45799999999
Q ss_pred CCCCEEEEEeC--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001363 406 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 406 pdg~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
+|+++|++.+. ++..+++-+++|..+. ++.||...|++++|-|.... .++||+.|++|.+|+-.--+...++..
T Consensus 113 ~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~ 188 (603)
T KOG0318|consen 113 FDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFRE 188 (603)
T ss_pred CCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccc
Confidence 99999988754 3334444444554445 78899999999999997665 899999999999998666677778889
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
|...|+++.|+| ||.++++++.||++.+||=.+++....+. .|.+.|.+++|+||++.+++++. +.++++|
T Consensus 189 HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIW 262 (603)
T KOG0318|consen 189 HSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIW 262 (603)
T ss_pred cccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEE
Confidence 999999999955 78999999999999999999999888887 78899999999999999999987 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1092)
|..+.++++++.....-.+....+.|. +..|++.+.+|+|.+++...+..+..+.+|. ..|+++..+|++++|++|
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSG 338 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEee
Confidence 999999999887654222344455565 5689999999999999999999888888764 469999999999999999
Q ss_pred eCCCeEEEEECCCCceeeec-ccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001363 641 ANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 641 ~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~ 719 (1092)
+.||.|.-|+...+..-... ++|...|.+++.+ +...+++.+.|.++++.++....
T Consensus 339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred ccCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCc
Confidence 99999999999988665544 6788888888776 23567888999999998764332
Q ss_pred CccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCC
Q 001363 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 799 (1092)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 799 (1092)
......+.+ .....+++..+++..++.+...+.+.+-+... +...
T Consensus 396 ~t~~~~~~l-----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~----- 440 (603)
T KOG0318|consen 396 YTKSEVVKL-----GSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI----- 440 (603)
T ss_pred ccccceeec-----CCCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----
Confidence 222221111 12233788888887666666555444422211 1111
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 800 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
.-.....+++++|++..+++|+ |+.++||.+..+.. ...+..|.++|++++||| |+.+||+|...+.|.+||+.+.
T Consensus 441 ~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 441 PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccC
Confidence 1345678999999999999998 79999999987553 334667999999999999 9999999999999999999998
Q ss_pred eeeEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe
Q 001363 877 EVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 877 ~~~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
+.... +.-|+..|.+++|||+.+++||||-|-.|.||+++.... .+.....|.. .|..++|-.+...+-+|.
T Consensus 520 ~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~----~i~iknAH~~---gVn~v~wlde~tvvSsG~ 592 (603)
T KOG0318|consen 520 EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK----HIIIKNAHLG---GVNSVAWLDESTVVSSGQ 592 (603)
T ss_pred ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh----heEecccccc---CceeEEEecCceEEeccC
Confidence 76433 334999999999999999999999999999999997432 2444455554 599999999998888899
Q ss_pred CCcEEEEEcC
Q 001363 956 ETHLAIYEAE 965 (1092)
Q Consensus 956 d~~i~lwd~~ 965 (1092)
|..|++|++.
T Consensus 593 Da~iK~W~v~ 602 (603)
T KOG0318|consen 593 DANIKVWNVT 602 (603)
T ss_pred cceeEEeccc
Confidence 9999999874
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=416.49 Aligned_cols=575 Identities=15% Similarity=0.180 Sum_probs=446.4
Q ss_pred CceEEee-cCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 336 SPMSMDF-HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~-spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
.+..+.. +..|+++.+ +....|.+||+.+|+...... .......|+|++-+||.-+||+|
T Consensus 23 N~~~~~~~~~~Gr~va~--~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAVAV--SALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcEEEE--eccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence 3443333 345874333 333689999999996553211 22344689999999999999999
Q ss_pred eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 494 (1092)
..||.|+||+..++.... ++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+..-|.
T Consensus 84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 999999999999875443 7889999999999999999 89999999999999999988999999999999988875
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC---------
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--------- 565 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--------- 565 (1092)
. +..++++.+.|+.|++||+.+..+..+...|.+.+..+++.+ +.+++++. +..+.+|++...
T Consensus 159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence 4 457999999999999999999999999999999999999988 67777765 445999988211
Q ss_pred ---eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--------------E-EeC---------
Q 001363 566 ---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--------------T-IDA--------- 618 (1092)
Q Consensus 566 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--------------~-~~~--------- 618 (1092)
+...++... ..+....+...++++++++-+.|..+.+|.+.+.+.+. . -..
T Consensus 231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 111122221 13455566677888889998999999999886532110 0 000
Q ss_pred --------CCCCCCCceEEEccCCC---EEEEEeCCCeEEEEECCCCcee---------eecccccCceeeeeecCCCcc
Q 001363 619 --------GGGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSV---------DAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 619 --------~~~~~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
-.....+.++.+-|.++ .|+. -.++++.+|.++..... ..+.+|...|.+++++.
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~---- 383 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS---- 383 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec----
Confidence 00112356677766443 3333 56778888887753222 35668888999888873
Q ss_pred ccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCee
Q 001363 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 758 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 758 (1092)
|...++++ ..+.+++|+..+... .... ..+.+.+..|-|.+++++.|..+|.+
T Consensus 384 ------------------d~~~~~Sg-a~~SikiWn~~t~kc---iRTi-----~~~y~l~~~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 384 ------------------DSILLASG-AGESIKIWNRDTLKC---IRTI-----TCGYILASKFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred ------------------Cceeeeec-CCCcEEEEEccCcce---eEEe-----ccccEEEEEecCCCceEEEeccCCce
Confidence 33334444 447899999774322 2111 33478888999999999999999999
Q ss_pred EEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC-----
Q 001363 759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----- 832 (1092)
Q Consensus 759 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~----- 832 (1092)
.+|++..... +-+ .+ .|.+.+.+++.+||++.+++++ |.+|++||..-
T Consensus 437 ~vfdlaS~~l----------------------~Et--i~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 437 QVFDLASASL----------------------VET--IR--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred EEEEeehhhh----------------------hhh--hh--ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 9999865421 111 11 4999999999999999999998 89999999752
Q ss_pred ceeeEEec-------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001363 833 FKTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 833 ~~~~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 905 (1092)
+...+.+. .-...|.|+.+|| |+++||++--|.+|+||-+++-+..-.+.||.-||.||..|||+++++|||
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS 569 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS 569 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc
Confidence 21111111 2456899999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEE
Q 001363 906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQA 984 (1092)
Q Consensus 906 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l 984 (1092)
.|+.|+||-++-|. |.+.+-+|.. .|.++.|-|+..++.+ |.|+.|+-||....+++.. +.+|...|+++
T Consensus 570 ADKnVKiWGLdFGD-----CHKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-L~~H~~ev~cL 640 (888)
T KOG0306|consen 570 ADKNVKIWGLDFGD-----CHKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-LDGHHSEVWCL 640 (888)
T ss_pred CCCceEEeccccch-----hhhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhhhhhee-eccchheeeee
Confidence 99999999998866 5666666665 7999999999888777 7999999999999999988 67899999999
Q ss_pred EEecCCCEEEEEECCCcEEEEEcCCCce
Q 001363 985 TFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 985 ~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
+.+|+|.+++++|.|.+|++|.-....+
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeeccCcce
Confidence 9999999999999999999999776443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=416.61 Aligned_cols=504 Identities=14% Similarity=0.231 Sum_probs=398.1
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
+.+|+|+.-+||.- +||+|-.||.|+||+..++..+.+ +.||...|+++.|...|..||+
T Consensus 65 k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 65 KAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred cceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEee
Confidence 45899999999986 899999999999999998876654 7899999999999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
||.|+.|.+||+-....+. .+.||...|+.+-|..+.+ ++++.+.|+.|++||+++..|..+.-.|.+.+..+++
T Consensus 125 GskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL 199 (888)
T ss_pred cCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence 9999999999998754443 6889999999999998777 8999999999999999999999999999999999999
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCce------E-------EecCCCCceEEEEEccCCCEEEEEecCC---------
Q 001363 494 HAKENIHFIFSISVDGKIKAWLYDSLGAR------V-------DYDAPGLGCTRMAYSANGRRLFSCGTSK--------- 551 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~-------~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------- 551 (1092)
.+ ..+++++.|+.+++|++....-. . ......+....++..++++++++-+.+.
T Consensus 200 ~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s 275 (888)
T KOG0306|consen 200 DE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRS 275 (888)
T ss_pred ec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecC
Confidence 54 58999999999999998211000 0 0000111122233333444333332211
Q ss_pred -----------------------------------------------------------------CCceeEEEEeCCC-C
Q 001363 552 -----------------------------------------------------------------EGESFLVEWNESE-G 565 (1092)
Q Consensus 552 -----------------------------------------------------------------~~~~~i~iwd~~~-~ 565 (1092)
-.++.+..+.+.. +
T Consensus 276 ~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~ 355 (888)
T KOG0306|consen 276 KEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSG 355 (888)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCC
Confidence 0022233333332 1
Q ss_pred eE--------EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE
Q 001363 566 AI--------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1092)
Q Consensus 566 ~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1092)
.. ...+.||. ..|.+++++.+...+++| ..+.+.+|+..+.+++.++... .+.+..|-|.++++
T Consensus 356 ~~~p~~~~~~~i~~~GHR---~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 356 KTSPEADRTSNIEIGGHR---SDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYI 427 (888)
T ss_pred CCCccccccceeeeccch---hheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecCCCceE
Confidence 11 12344555 899999999887655555 4578999999999999999754 57889999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001363 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
++|...|.+.+||+.....+...+.|.+.+++++.. ||++..++++.|.+|++|+...
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~----------------------pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS----------------------PDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhccccceeeeeec----------------------CCCCceEEecCCcEEEEEeEEE
Confidence 999999999999999988888888777777766664 5666677777777777776441
Q ss_pred ccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC
Q 001363 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797 (1092)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 797 (1092)
.... ....+.++..-. ..+.
T Consensus 486 ~~~~---------------------~gt~~k~lsl~~------------------------------------~rtL--- 505 (888)
T KOG0306|consen 486 VVSV---------------------PGTQKKVLSLKH------------------------------------TRTL--- 505 (888)
T ss_pred Eecc---------------------Ccccceeeeecc------------------------------------ceEE---
Confidence 1000 000000000000 1111
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 798 DSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 798 ~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
.-...|.|+.+||||++||++- |++++||-+.+.+....+.+|.-+|.|+.+|| |+++++||+.|++|+||-++-|
T Consensus 506 --el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 506 --ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred --eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccc
Confidence 1467899999999999999997 99999999999999999999999999999999 9999999999999999999999
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-Ee
Q 001363 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 955 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~ 955 (1092)
.|.+.+-+|.+.|.++.|-|+...+.++|.|+.|+-||-+. ...++.+.+|.. .|.+++.+|+|.++++ +.
T Consensus 583 DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 583 DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-----hhhheeeccchh---eeeeeEEcCCCCeEEeccC
Confidence 99999999999999999999999999999999999999887 447888888886 8999999999999999 68
Q ss_pred CCcEEEEEcCCc
Q 001363 956 ETHLAIYEAEEL 967 (1092)
Q Consensus 956 d~~i~lwd~~~~ 967 (1092)
|.+|++|.-..-
T Consensus 655 D~sIRlwE~tde 666 (888)
T KOG0306|consen 655 DKSIRLWERTDE 666 (888)
T ss_pred CceeEeeeccCc
Confidence 899999987653
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=397.64 Aligned_cols=333 Identities=20% Similarity=0.316 Sum_probs=305.1
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..|...+.||.+.|.|++|+|+|+ .||+|+.|.++++||+.+..+.++ .++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence 467789999999999999999998 599999999999999999988876 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec-----CCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-----d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+|||+..+.++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987764 5889999999999965 556 7999999999999999999999
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-----------CC------
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-----------NG------ 541 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-----------dg------ 541 (1092)
..+.+|+.+|+|++|- + ..++++|+.|++|++|+...+.....+.+|.+.|+.++.+. .+
T Consensus 241 ~~lsgHT~~VTCvrwG--G-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWG--G-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEc--C-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 9999999999999983 2 35999999999999999999889999999999999988872 23
Q ss_pred -------------------CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001363 542 -------------------RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1092)
Q Consensus 542 -------------------~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1092)
.+|++++. +.++++|+... .+++....+|. ..|+.+.|+||++++++++.|..
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence 34888875 67799999864 45788889998 89999999999999999999999
Q ss_pred EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccc
Q 001363 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1092)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (1092)
|++||..+|+.+.++.+| ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++
T Consensus 391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws-------- 460 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS-------- 460 (480)
T ss_pred eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence 999999999999999866 5679999999999999999999999999999999999999999999999996
Q ss_pred cccCCceeecCCCCCCCccceeeccccccceec
Q 001363 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1092)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~ 714 (1092)
|||..+++|+.|..+++|.
T Consensus 461 --------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 --------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------CCCceeecCCCceEEEeec
Confidence 8899999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=391.30 Aligned_cols=367 Identities=20% Similarity=0.297 Sum_probs=296.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77999999999999999999999999999999999976555 8899999999999999999 899999999999999
Q ss_pred CCCCcee-EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 472 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 472 ~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.++|+++ ..+.+|..+|++++|.|- ...|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence 9999876 678999999999998552 23466667777765
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
++.++|||...+.++..+.+|. .+|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 5558888888899999999999 999999998764 899999999999999999999999998866 5888888
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001363 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1092)
+-|- .|-+|..|.+ +....... .....+......
T Consensus 297 sTdy-~LRtgaf~~t--------~~~~~~~s----e~~~~Al~rY~~--------------------------------- 330 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHT--------GRKPKSFS----EEQKKALERYEA--------------------------------- 330 (480)
T ss_pred cchh-hhhccccccc--------cccCCChH----HHHHHHHHHHHH---------------------------------
Confidence 7542 2223332221 11100000 000000100000
Q ss_pred ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc
Q 001363 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790 (1092)
Q Consensus 711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 790 (1092)
..-..+.++++++.|.++.+|+-.... ++
T Consensus 331 ------------------------------~~~~~~erlVSgsDd~tlflW~p~~~k---------------------kp 359 (480)
T KOG0271|consen 331 ------------------------------VLKDSGERLVSGSDDFTLFLWNPFKSK---------------------KP 359 (480)
T ss_pred ------------------------------hhccCcceeEEecCCceEEEecccccc---------------------cc
Confidence 001123456777777777776532211 00
Q ss_pred eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 001363 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 869 (1092)
Q Consensus 791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~ 869 (1092)
+. .+. +|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.+++
T Consensus 360 i~--rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 360 IT--RMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK 434 (480)
T ss_pred hh--hhh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence 11 111 4899999999999999999999 99999999999999999999999999999999 999999999999999
Q ss_pred EEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 870 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd 914 (1092)
+|++.+.++...|.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=388.21 Aligned_cols=539 Identities=13% Similarity=0.169 Sum_probs=430.7
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
.+.|++||..+++-..+ .|.++|+...+.... .-.+...|.+++.||+|. ++++...+|...+-++.....++.
T Consensus 19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence 48899999999987555 599999998754432 224677899999999999 889999999999999888888888
Q ss_pred EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001363 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
+. ...+|.++.|+| ||.+++.+ ..+.+.+|....... ..++.+|-..|.++.|+.|.+++++++.
T Consensus 93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr--- 165 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR--- 165 (893)
T ss_pred Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence 75 678899999955 66666554 456899997654332 2356677789999999999999999986
Q ss_pred CceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------------------
Q 001363 553 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--------------------- 609 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--------------------- 609 (1092)
+..+++|+++..+- ...+.+|. +.|.++.|..+...+++.+.||.+.+|....
T Consensus 166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 66799999876655 56677777 9999999999999999999999999997761
Q ss_pred --Cce-----EE----EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcc
Q 001363 610 --VQL-----LT----TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 610 --~~~-----~~----~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
++. .. ..-.......+++.+|++..+.|+++-..|.+.+|+++.-..+..+..
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi---------------- 305 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI---------------- 305 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec----------------
Confidence 111 00 001111124578888888888888888888888888876655543331
Q ss_pred ccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-Ce
Q 001363 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GV 757 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~ 757 (1092)
...+|..++|+..|..++.++.. |.
T Consensus 306 ------------------------------------------------------s~~~I~t~~~N~tGDWiA~g~~klgQ 331 (893)
T KOG0291|consen 306 ------------------------------------------------------SDQKILTVSFNSTGDWIAFGCSKLGQ 331 (893)
T ss_pred ------------------------------------------------------ccceeeEEEecccCCEEEEcCCccce
Confidence 34567888999999999888876 99
Q ss_pred eEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee
Q 001363 758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 836 (1092)
Q Consensus 758 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~ 836 (1092)
+.+|+++...+ . +..++|...+.++++||||+++|+|+ ||+|+|||..++-|+
T Consensus 332 LlVweWqsEsY------------------------V--lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 332 LLVWEWQSESY------------------------V--LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred EEEEEeeccce------------------------e--eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 99999987643 1 22346999999999999999999998 799999999999999
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccc-cCCeEEEEEcCCCCEEEEEeCCC-cEEEEE
Q 001363 837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDA-QIFVWD 914 (1092)
Q Consensus 837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~s~Dg-~I~iwd 914 (1092)
.+|..|...|+.+.|+. .++.+++.+-||+|+.||+..++..+++... .-...|++..|.|..++.|+.|. .|+||+
T Consensus 386 vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred EEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 99999999999999999 8999999999999999999999999888753 23456788888899999888876 599999
Q ss_pred cCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEE
Q 001363 915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 993 (1092)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 993 (1092)
+++|+ .+..+.||.. +|.+++|+|+|..||+ +.|.+|++||+-........+ .+...+..++|+|||+-|
T Consensus 465 ~qTGq-----llDiLsGHEg---PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 465 VQTGQ-----LLDILSGHEG---PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKEL 535 (893)
T ss_pred eecCe-----eeehhcCCCC---cceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeE
Confidence 99965 6778888876 8999999999999999 699999999986543222212 357789999999999999
Q ss_pred EEEECCCcEEEEEcCCCceEEeeccccccCCCCc----------cccccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 994 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS----------CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 994 ~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
++++.||.|.+||...+.....+.....+..+.. ...-+-..+++++ ||..+++|+....|+++++++.
T Consensus 536 aVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 536 AVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchh
Confidence 9999999999999999988866654443333310 1111225678888 6899999999999999999764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=358.72 Aligned_cols=624 Identities=14% Similarity=0.145 Sum_probs=415.3
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe--
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-- 415 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-- 415 (1092)
..++.+|-.. ++|. -....|.+||+.....-+ ++..|..+++|+|||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccC
Confidence 4566667665 3332 123689999988765443 2667889999999999999999983
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC--CCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
....+++|++..-..+. ++..|...|+|++|+|.++ ++++.+. |-.|.+||++.......-+ -...|..++|
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~f 173 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAF 173 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEE
Confidence 66679999999876555 6788999999999999999 6777664 4567889887654433222 3456778888
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCC--ceEEEEEccCCCEEEEEecCC-CC--------ceeEEEEe
Q 001363 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK-EG--------ESFLVEWN 561 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~--~i~~~~~s~dg~~l~~~~~~~-~~--------~~~i~iwd 561 (1092)
+.||.++++.+ ...|++|.++....... +...+. -.-.+. +..+++.+..-+ .. .+.+.-+.
T Consensus 174 --sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr---~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 174 --SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLR---FNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred --ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccc---cchhhhhhhcCcccccceEEEecccceeeec
Confidence 66888888876 56899999887652211 111110 000000 111111111000 00 11121111
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC----------------------C
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA----------------------G 619 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~----------------------~ 619 (1092)
+.+++.....-. .....|++.+ .+++++|+.+|.|++|+..+-....+++. +
T Consensus 248 --sRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 248 --SRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred --hhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 111111111111 1234555554 57899999999999999877544433321 1
Q ss_pred CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee---eecccccCceeeeeecCCCccccccccCCceeecCCCCC
Q 001363 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV---DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE 696 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 696 (1092)
...+...++.|++....|.+...|..++|||+.+-..+ ..+--|...|+.+..-|...... .... -|
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~-----~~ac-----lp 391 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSP-----TAAC-----LP 391 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCc-----cccc-----CC
Confidence 12233456889999999999999999999999876443 33445777777766554211100 0000 12
Q ss_pred CCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCccccc
Q 001363 697 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776 (1092)
Q Consensus 697 d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 776 (1092)
.+ -+++++.|++||+|++........... =.++.+-..++..... ..+..
T Consensus 392 ~~-cF~TCSsD~TIRlW~l~~ctnn~vyrR-------------Nils~~l~ki~y~d~~--~q~~~-------------- 441 (1080)
T KOG1408|consen 392 RG-CFTTCSSDGTIRLWDLAFCTNNQVYRR-------------NILSANLSKIPYEDST--QQIMH-------------- 441 (1080)
T ss_pred cc-ceeEecCCCcEEEeecccccccceeec-------------ccchhhhhcCccccCc--hhhhh--------------
Confidence 22 378999999999999875322211100 0011111101111110 00000
Q ss_pred ccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC-
Q 001363 777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH- 854 (1092)
Q Consensus 777 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~- 854 (1092)
....-++|-.... . .+....++++++||+|++||+|. .|.++||++...+....+..|..+|.|+.||-.
T Consensus 442 d~~~~~fdka~~s------~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~ 513 (1080)
T KOG1408|consen 442 DASAGIFDKALVS------T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV 513 (1080)
T ss_pred hccCCcccccchh------h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch
Confidence 0001111111100 0 02567899999999999999998 599999999999999999999999999999852
Q ss_pred -CCCEEEEEeCCCcEEEEEcCC-ceeeEeeccccCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001363 855 -DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930 (1092)
Q Consensus 855 -d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg--~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 930 (1092)
..++||+++.|..|+|||+.. ..++.++.+|+..|+++.|.-.| ..++++|.|+.|.+--..... .. .+-.-.
T Consensus 514 ~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~--~g-~~f~r~ 590 (1080)
T KOG1408|consen 514 LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS--SG-RLFPRH 590 (1080)
T ss_pred hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc--Cc-eecccc
Confidence 357999999999999999965 46789999999999999998887 789999999976543322100 00 111111
Q ss_pred CCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccC--CCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 931 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 931 ~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
.+......+..++..|..+++++ +.|..|+|||+.+|+..+.+... |.+..-.+...|.|-||++...|.++.++|.
T Consensus 591 t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 591 TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence 11111246889999999999999 78999999999999999886654 4677778889999999999999999999999
Q ss_pred CCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001363 1008 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
.+|++++++. .|+..|. .+.|.+ |...|++.+.||.|.+|.++.
T Consensus 671 ~sgEcvA~m~--------GHsE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 671 VSGECVAQMT--------GHSEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhhhhhc--------Ccchhee--eeeecc-cchhheeecCCceEEEEECch
Confidence 9999998887 3555555 567888 689999999999999999864
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=351.70 Aligned_cols=509 Identities=15% Similarity=0.184 Sum_probs=379.7
Q ss_pred eecccCCCCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
+.+..|...++|+|||++|+ ++|+|- ....++||++..-..+.. +..|+-.|+|++|+
T Consensus 72 hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs 131 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS 131 (1080)
T ss_pred heecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence 44556777999999999998 689986 456799999998776654 66799999999999
Q ss_pred CCCCEEEEEeC--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE----
Q 001363 406 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---- 479 (1092)
Q Consensus 406 pdg~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~---- 479 (1092)
|.++|+++.+. |-.|.+||+.-..... -..-...|.+++|+.||. +++|.+ ...|++|.++.++...
T Consensus 132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence 99999998764 5578899887543222 123456799999999999 788888 5689999987665210
Q ss_pred ---------EE------------------------ecC-----------------CcCeEEEeecccCCccEEEEEecCC
Q 001363 480 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG 509 (1092)
Q Consensus 480 ---------~~------------------------~~~-----------------~~~v~~i~~~~~~~~~~l~s~~~dg 509 (1092)
.+ .|| +..-+|++. +.++|+.|+.+|
T Consensus 205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g 280 (1080)
T KOG1408|consen 205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG 280 (1080)
T ss_pred ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence 00 000 011123333 346899999999
Q ss_pred eEEEEEcCCCCceEEecC--------------------C----CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 510 KIKAWLYDSLGARVDYDA--------------------P----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 510 ~i~vwd~~~~~~~~~~~~--------------------~----~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.|++++..+..-..++.. . -.....+.|++....|.+... +..+++||++.-
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV 356 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence 999998765432222110 0 012356788888888888875 667999999876
Q ss_pred eEEEEEeeccccCCceEEEEEcCC-----------CCEEEEEeCCCcEEEEECCCCceEEEE-------------e----
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI-------------D---- 617 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~s~dg~i~iwd~~~~~~~~~~-------------~---- 617 (1092)
+.+......-.|...|+.+.--|. ...+++++.|++||+|++..+..-..+ .
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~ 436 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST 436 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence 554333222222356666554441 235889999999999999763211100 0
Q ss_pred ------------------CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccc
Q 001363 618 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1092)
Q Consensus 618 ------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1092)
.-+....+.+++.+|+|++||+|..-|.++||++.+.+....+..|...|.|+.++-..
T Consensus 437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~--- 513 (1080)
T KOG1408|consen 437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV--- 513 (1080)
T ss_pred hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch---
Confidence 00122458899999999999999999999999999999999999999999999998221
Q ss_pred cccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCC--cEEEEeecCCe
Q 001363 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGV 757 (1092)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~ 757 (1092)
-..++|++++.|.-|.++|... .+.+.....+|...|+++.|.-+| ..+++++.|..
T Consensus 514 ----------------~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 514 ----------------LTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred ----------------hhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 1357899999999999999652 233333346799999999999888 77899999977
Q ss_pred eEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee
Q 001363 758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 836 (1092)
Q Consensus 758 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~ 836 (1092)
+.+-..+.. .+|.......-+ -....+..+++.|..++++++. |..|+||++++++..
T Consensus 573 imFr~~qk~-------------------~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 573 IMFRVNQKA-------------------SSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred hheehhccc-------------------cCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 765322211 011101110000 1345678999999999999998 799999999999999
Q ss_pred EEecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 837 LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913 (1092)
Q Consensus 837 ~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iw 913 (1092)
+.|++ |.+....+...| .+.|||+.+.|+++.++|..+|+++.+..||+..|+.+.|++|-+.|++++.||.|.||
T Consensus 632 k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence 99975 556788999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCC
Q 001363 914 DVDG 917 (1092)
Q Consensus 914 d~~~ 917 (1092)
.+..
T Consensus 711 ~lp~ 714 (1080)
T KOG1408|consen 711 KLPL 714 (1080)
T ss_pred ECch
Confidence 9864
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=341.48 Aligned_cols=643 Identities=15% Similarity=0.167 Sum_probs=436.1
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC---EEEEEeC
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS 416 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~---~las~~~ 416 (1092)
.+|.|.+ ++|.|. ...|.+||........ .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456666 466654 3789999987653333 3889999999999999888 8999999
Q ss_pred CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc--eeEEEecCCcCeE--EEe
Q 001363 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVY--SLC 492 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~--~i~ 492 (1092)
|+.|.+|.++. +.+.....+.+|...+.|+. .... ...+...|+++.+||.+..+ ++..+.-....+. +++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999993 44555667777766655544 3222 22223789999999985555 3333333333333 334
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEccCCC---EEEEEecCCCCceeEEEEeCCCCe-
Q 001363 493 PHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA- 566 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~dg~---~l~~~~~~~~~~~~i~iwd~~~~~- 566 (1092)
+.+.++.-+++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++. |..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecCC
Confidence 444334345666777778888855433 34557899999999999987655 4555543 7889999764322
Q ss_pred --------------------EEEE----------EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEE
Q 001363 567 --------------------IKRT----------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT 614 (1092)
Q Consensus 567 --------------------~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~ 614 (1092)
.... +.||. +.|+++.|+|.+..|++++.|.++.+|...+. -.+.
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~ 305 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD 305 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence 1111 23566 99999999999999999999999999987654 3333
Q ss_pred EEeC---CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC---ceeeecccccCceeeeeecCCCccccccccCCce
Q 001363 615 TIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1092)
Q Consensus 615 ~~~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 688 (1092)
.... .+........-|+|+++.+++-+..|..++|...+. .....+.||...|..++|.
T Consensus 306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~--------------- 370 (764)
T KOG1063|consen 306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD--------------- 370 (764)
T ss_pred EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec---------------
Confidence 3321 122234678999999999999999999999994443 3444677999999999997
Q ss_pred eecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCc
Q 001363 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 768 (1092)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~ 768 (1092)
|.|.++++.+.|.+-|+|-.- +.......+..|+ .|...+.++++-+..-.+++++....+++|+.+..-.
T Consensus 371 -------psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQ-iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 371 -------PSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQ-IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred -------CCCCEEEEeccccceeeeccc-ccccceeeecccc-cccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence 678899999999999998755 2222234444443 5899999999999666688999999999999765321
Q ss_pred CcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE-EEEeCCeEEEE-------------Ec----
Q 001363 769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGVISLY-------------IV---- 830 (1092)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l-~~~sdg~i~iw-------------d~---- 830 (1092)
+......|.+....+. ......|..+-.|...-+. .+-+.+.-..| ..
T Consensus 442 ------------~~l~~i~g~~~~~~~~--~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed 507 (764)
T KOG1063|consen 442 ------------KSLMAICGKCFKGSDE--LPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED 507 (764)
T ss_pred ------------HHHHHHhCccccCchh--cccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence 0000000100000000 0012223333333221111 00000100000 00
Q ss_pred -----CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCE
Q 001363 831 -----MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 900 (1092)
Q Consensus 831 -----~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 900 (1092)
.....++.+.+|..+|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.|+|||||++
T Consensus 508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~ 586 (764)
T KOG1063|consen 508 QLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRY 586 (764)
T ss_pred HHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcE
Confidence 01223456789999999999999 899999988654 7899999999989999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCc--eeeee-eccC
Q 001363 901 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPI 976 (1092)
Q Consensus 901 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~--~~~~~-~~~~ 976 (1092)
|+++|+|+++.+|.......... .+...+.|.. -|.++.|+||+.++|+ +.|.+|++|..... +.+.. -...
T Consensus 587 LLsvsRDRt~sl~~~~~~~~~e~-~fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~ 662 (764)
T KOG1063|consen 587 LLSVSRDRTVSLYEVQEDIKDEF-RFACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK 662 (764)
T ss_pred EEEeecCceEEeeeeecccchhh-hhccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc
Confidence 99999999999999865432221 2233444443 6899999999999999 68999999999877 55544 2345
Q ss_pred CCCCEEEEEEecC-----CCEEEEEECCCcEEEEEcCCCce---EEeecc-ccccCCCCccccccceEEEECCC------
Q 001363 977 SSVPISQATFSCD-----CRMVFTSFVDGTLSIHEASNLEV---QCRILS-TAYLRPTTSCLHVYPHAIAAHPL------ 1041 (1092)
Q Consensus 977 h~~~v~~l~fs~d-----g~~l~t~~~Dg~i~vwd~~~~~~---~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~------ 1041 (1092)
++..|+.+++.|- +..+++|-..|.|.+|....-.. ...+.. ..--+...|.+.|. .++|.|.
T Consensus 663 ~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~ 740 (764)
T KOG1063|consen 663 FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWV 740 (764)
T ss_pred cCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEeccccccccc
Confidence 7899999999872 23677888999999999662111 111111 11111222344555 4566653
Q ss_pred ---CCCEEEEEeCCCcEEEEecC
Q 001363 1042 ---KPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1042 ---d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+...|++|++|..++++++.
T Consensus 741 ~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 741 EDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccceeEEeeecccceeEEeecc
Confidence 22357999999999999874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=334.42 Aligned_cols=345 Identities=19% Similarity=0.268 Sum_probs=288.8
Q ss_pred CCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCC--CCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
+|....+.+. |+.+|.+.+|+|-..-++|+|+.|-+.++|++.. +.......+ ..|...--. -...+..|
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-----rh~~~~~~~--s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-----RHCIREGGK--SVPSNKDV 238 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-----hhhhhhhcc--cCCccCCc
Confidence 5666667777 9999999999997765799999999999999874 111110000 001000000 01134689
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999998743 22 6888999999999999999 89999999999999999999999
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+.-|..+-..+.|-. ...+++++.||.|+|+.+....+..++.+|.++|.++.|.|.|.+|++++. |+++++
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999998866666642 257999999999999999999999999999999999999999999999986 778999
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCC---------CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
|+.........+..|. ..|+.+.|+|.+ ..+++++.|++|++||+..+.++..+..| ..+|.+++|
T Consensus 386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence 9999999999999988 899999999974 46899999999999999999999998755 457999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001363 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1092)
+|+|+++|+|+.||.|.+|+.++++.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~------------------------------------------------- 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ------------------------------------------------- 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence 9999999999999999999999987776554
Q ss_pred ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001363 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~ 763 (1092)
..+.|..+.|+.+|..+.++.+||.+++-|+
T Consensus 492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2344677888888888888888888887665
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=342.25 Aligned_cols=623 Identities=13% Similarity=0.115 Sum_probs=418.2
Q ss_pred eeeecccCCCCceEEeecCCCc--eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~--~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...+|.||..+|+|+.|-|+.+ -++++|+.|+.|++|.++......... +.+|...+. +
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~-----------------~~g~~~~~~--c 106 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT-----------------IQGHCKECV--C 106 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------ecCcceeEE--E
Confidence 4578999999999999998876 147899999999999998444333222 445555554 4
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC--ceeEE
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTYS 480 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~--~~~~~ 480 (1092)
++.......+...|+++.+||.+..+.. .....+.....--.|+++.++.+.++++.|+.+..|.++.-.++ +.+..
T Consensus 107 v~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e 186 (764)
T KOG1063|consen 107 VVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE 186 (764)
T ss_pred EEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence 4433333333378999999999554411 11111222222345777788666667888888888988875544 45678
Q ss_pred EecCCcCeEEEeecccCC-ccEEEEEecCCeEEEEEcCCCC-----------------ce--------------EEecCC
Q 001363 481 FEGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLG-----------------AR--------------VDYDAP 528 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~-----------------~~--------------~~~~~~ 528 (1092)
+.||.+.|.+++|..... .-+|+++|.|..||+|.+.... .. ..+.+|
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 899999999999976544 5689999999999999764322 00 012478
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeecccc--CCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQ--HNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
...|.++.|+|.+..|++++. |.++.+|.+.+. --+....--... ........|+|+++.+++-+..|..++
T Consensus 267 eDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred ccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 889999999999999998876 566999987654 333332211111 245888999999999999999999999
Q ss_pred EEC-CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC----ceeeecccccCceeeeeecCCCccc
Q 001363 605 WDM-NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVT 679 (1092)
Q Consensus 605 wd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1092)
|.. +........-..++...|..++|+|.|.+|++.+.|.+-|+|..-.. ..+...+.|...++|+++-+
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn----- 417 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN----- 417 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-----
Confidence 983 33344444445567788999999999999999999999999865421 33445566777777777752
Q ss_pred cccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccC------CccccccEEEEEEecCCcEEEEee
Q 001363 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP------SKVKANKISRLTYNNGGQAIFALA 753 (1092)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~------~~~~~~~i~~l~~s~~g~~l~~~~ 753 (1092)
....+++|..+..+|+|+....-...+..+.-+ .......|..+-.|.+.-..= -.
T Consensus 418 -----------------~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~-e~ 479 (764)
T KOG1063|consen 418 -----------------EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG-ET 479 (764)
T ss_pred -----------------CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc-cc
Confidence 244567788888889998542211111111000 001122233333333221100 00
Q ss_pred cCCee-EEEeecCCCcCcCcccccccCCccccCCCCCceeeecC-----CCCCCCCCeeEEEEecCCCEEEEEeC-----
Q 001363 754 SNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT-----TDSNSQEAVPCFALSKNDAYLFSASG----- 822 (1092)
Q Consensus 754 ~dg~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l-----~~~~~~~~v~~~~~s~dg~~l~~~sd----- 822 (1092)
.+|.. ..|. + ...+.....+..+.....+....+ +-.+|..+|.+++.+|+|+++|++..
T Consensus 480 ~~G~~~~~~~-e--------t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~e 550 (764)
T KOG1063|consen 480 NTGGEAAVCA-E--------TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKE 550 (764)
T ss_pred ccccccceee-e--------cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCcc
Confidence 11110 0000 0 000011111122222222222211 12369999999999999999999961
Q ss_pred -CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce----eeEeeccccCCeEEEEEcCC
Q 001363 823 -GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDA 897 (1092)
Q Consensus 823 -g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~V~~l~~spd 897 (1092)
..|++|+..+...++.+.+|.-.|+.++||| |+++|++.+.|.++.+|...... .....+.|+.-|+++.|+||
T Consensus 551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD 629 (764)
T ss_pred ceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence 3499999999999999999999999999999 99999999999999999986542 13446789999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC-----CEEEEE-eCCcEEEEEcCC-----
Q 001363 898 LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-----TRFLLV-HETHLAIYEAEE----- 966 (1092)
Q Consensus 898 g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-----~~la~~-~d~~i~lwd~~~----- 966 (1092)
++++||+|+|++|+||........ .+... ........|+.+++.|-. ..+++| ..|.|.+|....
T Consensus 630 e~~FaTaSRDK~VkVW~~~~~~d~---~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~ 705 (764)
T KOG1063|consen 630 EKYFATASRDKKVKVWEEPDLRDK---YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQV 705 (764)
T ss_pred cceeEEecCCceEEEEeccCchhh---hhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccc
Confidence 999999999999999999875311 11111 112223478899987632 245566 568999998541
Q ss_pred --cee----eeeeccCCCCCEEEEEEecC----------CCEEEEEECCCcEEEEEcC
Q 001363 967 --LTC----LKQWFPISSVPISQATFSCD----------CRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 967 --~~~----~~~~~~~h~~~v~~l~fs~d----------g~~l~t~~~Dg~i~vwd~~ 1008 (1092)
+.. ...-..+|...|..+.|+|- ...|++|+.|.+++++++.
T Consensus 706 ~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 706 TVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 110 01112357889999999974 2357999999999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=338.33 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=266.7
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC--C
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G 408 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd--g 408 (1092)
.|.+.+|..+.||+|++ +||||+.+|.++||+..++..+.+ +.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 36678999999999998 799999999999999999877665 8899999999999996 6
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
..+|+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999877666 7889999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
.+++|.+ ||.+++||+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+. |++++|||++....+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999955 7789999999999999999999999999999999999999999999999986 778999999999999
Q ss_pred EEEeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 569 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
.++.+|. +-|..+.|+| .|.+|++++.|++++||...+..+++.+.+|.. .|.++..++|+..+++++.|.+++
T Consensus 381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence 9999998 9999999999 688899999999999999999999999997755 599999999999999999999999
Q ss_pred EEE
Q 001363 648 ILE 650 (1092)
Q Consensus 648 iw~ 650 (1092)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=330.79 Aligned_cols=580 Identities=16% Similarity=0.171 Sum_probs=420.4
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
..+..-|..++++.+.+.+..+||.+.-..+.. -..+...|+|++-..+ +..+++.. .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence 455555556788888899999999988776653 2347788998887655 44444333 3
Q ss_pred EEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-cee----EEEecCCcCeEEEeec
Q 001363 420 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~----~~~~~~~~~v~~i~~~ 494 (1092)
|.+|.. |+.+. ..+.+|.+.|.-+. +-|. .++++..++.+.||+..++ ..+ .-++...+.|+++. +
T Consensus 97 i~~~~r--gk~i~--~~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIR--HTTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEE--EEeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666654 33233 24567777777664 3456 6899999999999998874 221 12233333377764 4
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|.|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 4433457899999999999999999999999999999999999998888888876 677999999999999999976
Q ss_pred cccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 575 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
. +.|+.++|..||+.+++ |+..|.+.+||++..+.+..+... +...+....|-|....+++++.|+++++|-.++
T Consensus 244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na-h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA-HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc-ccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 6 89999999999977655 667799999999998888776522 234688899999999999999999999986653
Q ss_pred C----ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccC
Q 001363 654 S----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 729 (1092)
Q Consensus 654 ~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~ 729 (1092)
+ +.++.-.|
T Consensus 320 ~dg~pR~LR~R~G------------------------------------------------------------------- 332 (910)
T KOG1539|consen 320 GDGVPRLLRSRGG------------------------------------------------------------------- 332 (910)
T ss_pred CCCcchheeeccC-------------------------------------------------------------------
Confidence 3 33333334
Q ss_pred CccccccEEEEEEe-cCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001363 730 SKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808 (1092)
Q Consensus 730 ~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~ 808 (1092)
|..+..++.|. .+|..+..++.|++++.+++-...+...-.. ..+...++...... +..-.-.+|..+
T Consensus 333 ---Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~-~~~~k~p~i~~f 401 (910)
T KOG1539|consen 333 ---HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFS-TEKLKLPPIVEF 401 (910)
T ss_pred ---CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccc-hhhhcCCcceee
Confidence 44444455544 4555555555555555554433222110000 00111100000000 000022345555
Q ss_pred EEecC-----CCEEEEE-eCCeEEEEEcCCcee-eEEec-----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 809 ALSKN-----DAYLFSA-SGGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 809 ~~s~d-----g~~l~~~-sdg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
++... .+.++.. ++...+.|++..... ...+. .....+++++.++ .|++.+.|+..|.|.+|++++|
T Consensus 402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC
Confidence 55432 1233333 257799999986554 23332 2336889999999 9999999999999999999999
Q ss_pred eeeEee---ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 877 EVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 877 ~~~~~l---~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
-....+ ..|.++|++++...-++.++|++.+|.+++||++.... +....- ...+..+..+.....+|+
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~l----~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLRL----GSSITGIVYHRVSDLLAI 551 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeecc----CCCcceeeeeehhhhhhh
Confidence 999888 58999999999988889999999999999999998542 222221 125788888888888888
Q ss_pred -EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCcccccc
Q 001363 954 -VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1032 (1092)
Q Consensus 954 -~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1032 (1092)
..|-.|.++|+.+.+.++. +.+|+..|++++|||||+||++++.|++|++||+.++.++..+... ..
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~ 619 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SP 619 (910)
T ss_pred hcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------Cc
Confidence 5677899999999988887 6789999999999999999999999999999999999999777611 12
Q ss_pred ceEEEECCCCCCEEEEEeCC-CcEEEEe
Q 001363 1033 PHAIAAHPLKPTQFAVGLTN-GEVYVIE 1059 (1092)
Q Consensus 1033 ~~~~~~~p~d~~~l~~~~~d-g~v~~w~ 1059 (1092)
+..+.|+| .+++|||+..| ..|++|-
T Consensus 620 ~~sls~SP-ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 620 CTSLSFSP-NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ceeeEECC-CCCEEEEEEecCceEEEEE
Confidence 45789999 58999999999 6899997
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=330.11 Aligned_cols=479 Identities=17% Similarity=0.274 Sum_probs=360.2
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+.+..|++.|-+|.|+|...+ +.++-..|.|.|||.++...++.+++ ..-+|.+..|-+-
T Consensus 7 rk~~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksfeV-------------------~~~PvRa~kfiaR 66 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSFEV-------------------SEVPVRAAKFIAR 66 (794)
T ss_pred hHhhccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeeeee-------------------cccchhhheeeec
Confidence 556678999999999999985 55667789999999999988876332 5679999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCc
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGA 486 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~ 486 (1092)
-+++++|+.|..|+||+..+++.+. .+.+|...|.+++.+|... +++|+|.|-+|++||++.+ .+.++|.||..
T Consensus 67 knWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEH 141 (794)
T ss_pred cceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence 9999999999999999999997666 7899999999999999988 8999999999999999876 77899999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC--CEEEEEecCCCCceeEEEEeCCC
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
.|.+++|+|. |...+++++-|++|++|.+....+..++.+|...|.++.+-+-| .+|++++. +..+.+||.++
T Consensus 142 yVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQt 216 (794)
T KOG0276|consen 142 YVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQT 216 (794)
T ss_pred EEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecch
Confidence 9999999987 55799999999999999999999999999999999999998755 58999875 77899999999
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
..+++++.||. ..|..+.|+|.-..+++|++||+++||+..+.++..++... ...+.+++-.+.++.+++|.+.|
T Consensus 217 k~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg 291 (794)
T KOG0276|consen 217 KSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEG 291 (794)
T ss_pred HHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCC
Confidence 99999999999 89999999999999999999999999999998888887654 34689999999888999999888
Q ss_pred eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001363 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~ 724 (1092)
.+.+ .+....+...+. +.|+. +|...
T Consensus 292 ~i~v-~lgreeP~vsMd----------------------------------~~gKI-----------iwa~~-------- 317 (794)
T KOG0276|consen 292 SVTV-KLGREEPAVSMD----------------------------------SNGKI-----------IWAVH-------- 317 (794)
T ss_pred cEEE-EccCCCCceeec----------------------------------CCccE-----------EEEcC--------
Confidence 7755 222221111111 11111 12110
Q ss_pred ccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCce--eeecCCCCCCC
Q 001363 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF--MVNDTTDSNSQ 802 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~l~~~~~~ 802 (1092)
+.|..+-.- +.+..+ ++..|+.+ ...++. .-.
T Consensus 318 ----------~ei~~~~~k-------s~~~~~---------------------------ev~DgErL~LsvKeLg--s~e 351 (794)
T KOG0276|consen 318 ----------SEIQAVNLK-------SVGAQK---------------------------EVTDGERLPLSVKELG--SVE 351 (794)
T ss_pred ----------ceeeeeece-------eccCcc---------------------------cccCCccccchhhhcc--ccc
Confidence 111111100 000000 11111111 000110 011
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001363 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
-....++-+|+|+++++++||.-.||..-..+. ...+......|++ |....|+-..++.|+++ ++.+....+
T Consensus 352 iyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi 423 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSI 423 (794)
T ss_pred cchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceecccc
Confidence 123457889999999999999999987543322 2445667889999 77778888888999998 666666655
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEE
Q 001363 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 962 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lw 962 (1092)
...-. +..--.|.+|...+ ++.+++||.++++. ++..+-. ...+.|+.+|.+++.+.|...+++
T Consensus 424 ~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~l-----VrrI~v~------~k~v~w~d~g~lVai~~d~Sfyil 487 (794)
T KOG0276|consen 424 RPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGEL-----VRRIEVT------SKHVYWSDNGELVAIAGDDSFYIL 487 (794)
T ss_pred ccccc----eeeecCCceEEEEe-CCeEEEEEcccceE-----EEEEeec------cceeEEecCCCEEEEEecCceeEE
Confidence 42111 11112345555555 55599999998663 3333322 347999999999999888876666
Q ss_pred EcC
Q 001363 963 EAE 965 (1092)
Q Consensus 963 d~~ 965 (1092)
...
T Consensus 488 ~~n 490 (794)
T KOG0276|consen 488 KFN 490 (794)
T ss_pred Eec
Confidence 553
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=306.95 Aligned_cols=299 Identities=20% Similarity=0.281 Sum_probs=256.3
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+..+|++|++.|+.++..+.+..++.+++.|.++.+|++......+- .+ ...++||+..|..++.
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------~~--~r~~~GHsH~v~dv~~ 71 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------VP--VRRLTGHSHFVSDVVL 71 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------ce--eeeeeccceEecceEE
Confidence 345789999999999999999877999999999999999876532221 11 1128899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
++||++.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|.+ .+++|+.|++|++||.. |.+..++..+
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~ 145 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHED 145 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecC
Confidence 9999999999999999999999996554 6889999999999999999 69999999999999955 4555555444
Q ss_pred --CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 485 --GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 485 --~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
.+.|++++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+. ++.+.+||+
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL 221 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDL 221 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEc
Confidence 78999999999988899999999999999999999999999999999999999999999999876 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC-------CCCCceEEEccCCC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGT 635 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~ 635 (1092)
+.++.+..+... ..|.+++|+|+...|+.+. +..|+|||++++..+..+..... .+...+++|++||.
T Consensus 222 ~~~k~lysl~a~----~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 222 NEGKNLYSLEAF----DIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ 296 (315)
T ss_pred cCCceeEeccCC----CeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc
Confidence 999998887764 5899999999865555544 45699999999998877754322 23355789999999
Q ss_pred EEEEEeCCCeEEEEECC
Q 001363 636 LLAVIANENRIKILETP 652 (1092)
Q Consensus 636 ~l~~~~~dg~i~iw~~~ 652 (1092)
.|++|..|+.|++|.+.
T Consensus 297 tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEeeecCCcEEEEEee
Confidence 99999999999999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=333.90 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=266.2
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
|.+.+|..+.||+|++.||+|+.+|.+++|+..+...+. ++.+|...|.++.|+|......++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456799999999999999999999999999999875444 89999999999999998422379999999999999999
Q ss_pred CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
+..++..+.+|...|..++|+| +|++|.|++.|.+-++||+.++.......+|..+|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999976 6689999999999999999999999999999999999999999999999987
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 632 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 632 (1092)
|..-++||+++|.++..+.+|. .+|..+.|+|+|..+++||.|++++|||++..+.+.++..|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 6668999999999999999988 9999999999999999999999999999999999999887754 699999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
.|.+|++++.|++++||...+..+++.+.||.+.|.++.++ +|+..+++++.|.++++
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence 78999999999999999999999999999999999999996 78999999999999999
Q ss_pred ec
Q 001363 713 EK 714 (1092)
Q Consensus 713 w~ 714 (1092)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=303.29 Aligned_cols=294 Identities=17% Similarity=0.250 Sum_probs=268.0
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
..++|+||.+.|.++.|++|.+ .++++|.||.+.|||.-|....+. ++-....|..+||+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEEC
Confidence 4489999999999999999998 589999999999999998877664 44467899999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCC--C-cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGG--S-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~--~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
|.|+++|+|+-|+...||++.+. + ..+...++.+|++.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence 99999999999999999999865 2 2234446889999999999999886 9999999999999999999999999
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.+++|.|+|..+++|+. +++.++||+
T Consensus 184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDl 258 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDL 258 (343)
T ss_pred CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEee
Confidence 99999999999876 7789999999999999999999999999999999999999999999999986 777999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
+..+.+..+.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|. ..|.++..+|||.-+++|+.
T Consensus 259 RaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe--NRvScl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 259 RADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE--NRVSCLGVSPDGMAVATGSW 335 (343)
T ss_pred cCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC--CeeEEEEECCCCcEEEecch
Confidence 9999998887433 45789999999999999999999999999999999999998775 47999999999999999999
Q ss_pred CCeEEEEE
Q 001363 643 ENRIKILE 650 (1092)
Q Consensus 643 dg~i~iw~ 650 (1092)
|..++||.
T Consensus 336 Ds~lriW~ 343 (343)
T KOG0286|consen 336 DSTLRIWA 343 (343)
T ss_pred hHheeecC
Confidence 99999994
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=322.52 Aligned_cols=546 Identities=13% Similarity=0.153 Sum_probs=404.8
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
..+.+.|+|++-..+-- ++|.| ..|.+|. .|+.+.. +..+|.+.|.-+.. =|.+
T Consensus 73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~~--fGe~ 126 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIRH------------------TTLLHGAKVHLLLP--FGEH 126 (910)
T ss_pred CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEEE------------------EeccccceEEEEee--ecce
Confidence 46778999999887754 34443 4566665 3433321 25567777776643 4889
Q ss_pred EEEEeCCCEEEEEEccCC-CcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001363 411 LGVAYSKHIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~-~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
++++..++.+.||+..++ +......++. ...+.|+++. +|..---.++.|+.+|.+++|++++++.+++++++...|
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I 205 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI 205 (910)
T ss_pred EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence 999999999999999884 2211111222 2222377664 554321148889999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
+++.-+|.- ..++.|..+|+|.++++...+.+..+....+.|++++|..||..+.+.+. ..|.+.+||++..+.+
T Consensus 206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLI 280 (910)
T ss_pred eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeee
Confidence 999876544 58999999999999999999999999988889999999999998776653 2567999999998888
Q ss_pred EEEe-eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cc--eEEEEeCCCCCCCCceEEEc-cCCCEEEEEeC
Q 001363 569 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQ--LLTTIDAGGGLPENPRICFN-KNGTLLAVIAN 642 (1092)
Q Consensus 569 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~--~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~ 642 (1092)
.... .|. +.+....|.|....+++++.|+.+++|=.++ |. .+.... +|..+..++.|. .+|..+.+++.
T Consensus 281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEeccc
Confidence 7776 444 8899999999999999999999999885553 42 233333 445567889887 68999999999
Q ss_pred CCeEEEEECCCCceeeeccc------------------ccCceeeeeecCCCccccccccCCceeecCCC-CCCCcccee
Q 001363 643 ENRIKILETPESNSVDAAGV------------------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPEIS 703 (1092)
Q Consensus 643 dg~i~iw~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~s 703 (1092)
|++++.+++.....-+.+.. .-.+|..+++. ... ....+.+..
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~------------------~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE------------------NAREKEWDNVITA 417 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc------------------cchhhhhcceeEE
Confidence 99999988763311111110 01112112211 110 122334444
Q ss_pred eccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccc
Q 001363 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1092)
Q Consensus 704 ~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 783 (1092)
.-.+...+.|+......++...-.-+.......+.+++.++-|++.+.|.+.|.|.+|+++.+-.
T Consensus 418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~--------------- 482 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH--------------- 482 (910)
T ss_pred ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee---------------
Confidence 45556788899876555443322222223456789999999999999999999999999876521
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEE
Q 001363 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 862 (1092)
Q Consensus 784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg 862 (1092)
...+- ..+.|..+|+.++...-++.+++++ +|.+.+||..+...+..+. -...++++..+. ...++|.+
T Consensus 483 -------r~sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~ 552 (910)
T KOG1539|consen 483 -------RKSFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIA 552 (910)
T ss_pred -------ecccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhh
Confidence 11110 1124899999999998888888887 8999999999888777776 446778888888 78899999
Q ss_pred eCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEE
Q 001363 863 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 942 (1092)
..|-.|+++|..+.+.++.+.||++.|++++|||||++|++++.|++|++||+.++.......+. .+..++
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sl 623 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSL 623 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------Ccceee
Confidence 99999999999999999999999999999999999999999999999999999997754432222 257899
Q ss_pred EEccCCCEEEEEe-C-CcEEEEEcC
Q 001363 943 QFHKDQTRFLLVH-E-THLAIYEAE 965 (1092)
Q Consensus 943 ~~s~dg~~la~~~-d-~~i~lwd~~ 965 (1092)
.|||+|.+||+.. | ..|++|.-.
T Consensus 624 s~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EECCCCCEEEEEEecCceEEEEEch
Confidence 9999999999953 3 569999743
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=292.52 Aligned_cols=287 Identities=15% Similarity=0.179 Sum_probs=265.4
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ ++++|+.|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 388999999999999999999999999999999998865333 4556778899999999999 89999999999999
Q ss_pred ECCCC------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCE
Q 001363 471 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 543 (1092)
Q Consensus 471 d~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~ 543 (1092)
++.+. +..+.+.+|.+.+.++.|.. | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 34577899999999999964 3 5799999999999999999999999999999999999999 9999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
+++|+- +...++||++.+.++++|.+|. ..|+++.|.|+|.-+++|++|++.|+||++..+.+..+.......
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 999987 6669999999999999999999 999999999999999999999999999999999999998877778
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
+|++++||..|++|++|..|..+.+||.-.++.+..+.+|.+.|.++..+ |||..+++
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T 332 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT 332 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence 89999999999999999999999999999999999999999999999996 77888999
Q ss_pred eccccccceec
Q 001363 704 VEAENKSEVEK 714 (1092)
Q Consensus 704 ~~~d~~i~lw~ 714 (1092)
|+.|.++|||.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=284.17 Aligned_cols=293 Identities=17% Similarity=0.276 Sum_probs=251.4
Q ss_pred ceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001363 347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1092)
Q Consensus 347 ~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 426 (1092)
.-+|++++.|.+|++|...+|.+.++ +....+.|+.+...||+++||+++... |++||+.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~ 69 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLN 69 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEcc
Confidence 35899999999999999999999876 334678999999999999999997665 9999999
Q ss_pred CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe
Q 001363 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506 (1092)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~ 506 (1092)
++..- ...++.+|+..|+++.|..||+ +++|||.||+++|||++...+.+.++ |..+|+++.++| +..-|++|.
T Consensus 70 S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp--nQteLis~d 143 (311)
T KOG0315|consen 70 SNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP--NQTELISGD 143 (311)
T ss_pred CCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC--CcceEEeec
Confidence 98754 5668999999999999999999 89999999999999999977777775 779999999976 446899999
Q ss_pred cCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe------EEEEEeeccccCC
Q 001363 507 VDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQHN 579 (1092)
Q Consensus 507 ~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~~ 579 (1092)
.+|.|++||+........+ ......|.+++..|||.+++.+.. .|..++|++-++. ++..++.|. +
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~---~ 216 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN---G 216 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---c
Confidence 9999999999988665544 344568999999999999999865 6679999987653 344566666 8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeee
Q 001363 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA 659 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 659 (1092)
.+..+.++|++++|+++|.|.+++||+.++. ....+...++...+..++||.||++|++++.|+..++|++..++.+..
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 8999999999999999999999999999988 333333344456799999999999999999999999999999999999
Q ss_pred cccccCceeeeeec
Q 001363 660 AGVLSDNLRKLSVN 673 (1092)
Q Consensus 660 ~~~~~~~v~~~~~~ 673 (1092)
..+|.....|++..
T Consensus 296 y~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 296 YQGHHKAAVCVALN 309 (311)
T ss_pred cCCcccccEEEEee
Confidence 99998887777654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=328.67 Aligned_cols=278 Identities=18% Similarity=0.259 Sum_probs=242.1
Q ss_pred ccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeE--------Eeeeeee----ecccccce
Q 001363 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF--------IRNFKVW----DIGACSML 386 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~--------~~~~~~~----d~~~~~~~ 386 (1092)
...+|.-|..++..-...++|..||+|+. +||.|-.|..|++|.+...+... ......- |+..-...
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 56778888888887777999999999998 89999999999999998533111 0000000 11111122
Q ss_pred eeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc
Q 001363 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1092)
Q Consensus 387 ~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 466 (1092)
.....+.||+++|..+.|+|+.++|++++.|++|++|.+.+..++- ..+||..+|+++.|+|-|- +++|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 2334489999999999999999999999999999999999976554 6789999999999999998 8999999999
Q ss_pred EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
.++|......+++.+.+|-..|.|+.|+| +..++++||.|.++|+||..++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 99999999999999999999999999977 5579999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++. ++.|.+||+.+++.+..+.+|. +.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 976 7779999999999999999997 999999999999999999999999999987543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=282.97 Aligned_cols=296 Identities=17% Similarity=0.185 Sum_probs=250.1
Q ss_pred ccccccEEEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001363 731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 809 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~ 809 (1092)
.+|.+.|..++..+. ...++.++.|..+.+|++... |...|..... +. +|...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence 459999999999887 556778888999999998764 2334443333 33 4999999999
Q ss_pred EecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc-ccC
Q 001363 810 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSK 887 (1092)
Q Consensus 810 ~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~ 887 (1092)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|++|++|+...........+ |++
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 999999999998 89999999999999999999999999999999 899999999999999999986544444333 388
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEc
Q 001363 888 RVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA 964 (1092)
Q Consensus 888 ~V~~l~~spd--g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~ 964 (1092)
-|.|+.|+|+ ..+++++|.|++|++||+.+ .+..+.+.+|.. .++.+++||||.+.+. +.||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 9999999998 78999999999999999998 446666777765 8999999999999999 68999999999
Q ss_pred CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCC
Q 001363 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1044 (1092)
+.++.+.. .+|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+...-+ ....+.+.+++++|++ ||.
T Consensus 222 ~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~ 296 (315)
T KOG0279|consen 222 NEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQ 296 (315)
T ss_pred cCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCc
Confidence 99999765 3588999999999998777655 56679999999999988877544333 2234567778999998 699
Q ss_pred EEEEEeCCCcEEEEecC
Q 001363 1045 QFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1045 ~l~~~~~dg~v~~w~~~ 1061 (1092)
.|++|..|+.|++|.+.
T Consensus 297 tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEeeecCCcEEEEEee
Confidence 99999999999999984
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=302.76 Aligned_cols=465 Identities=15% Similarity=0.205 Sum_probs=345.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|+..|.++.|+|....++++-.+|.|.|||.++...++ .+.-..-+|.++.|-+--+ ++++|+.|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 34488999999999999999999999999999999987776 5666778999999998877 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 549 (1092)
..+++.++.|..|.+.|.+++.+|.. .+++++|.|-+|++||++.. .+..++.+|.+-|..++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999998754 79999999999999999875 45678999999999999999 5678888887
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+++|.+|.+.+..+..++.+|. ..|+++.+-+- ..++++|+.|.+++|||..+..+++++.+|.+ .|..
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~ 232 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF 232 (794)
T ss_pred ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence 6679999999999999999999 89999999764 47999999999999999999999999997755 6999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++|+|.-..+++|+.||+++||+..+-+....+.-.-+.
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR----------------------------------------- 271 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER----------------------------------------- 271 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCce-----------------------------------------
Confidence 999999999999999999999998876555444433333
Q ss_pred cccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCC
Q 001363 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1092)
Q Consensus 708 ~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1092)
+.+++..+.+..++.|..+|.+.+=
T Consensus 272 -----------------------------vW~I~~~k~~~~i~vG~Deg~i~v~-------------------------- 296 (794)
T KOG0276|consen 272 -----------------------------VWCIAAHKGDGKIAVGFDEGSVTVK-------------------------- 296 (794)
T ss_pred -----------------------------EEEEeecCCCCeEEEeccCCcEEEE--------------------------
Confidence 4444444444445555555544430
Q ss_pred CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC--CeEEEE------EcCCceeeE----EecCCCCCeEEEEEcCCC
Q 001363 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHD 855 (1092)
Q Consensus 788 g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd--g~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d 855 (1092)
-......+..++.|+.+-+... -.+.+- ++..|+.+. .+....-....++.+| +
T Consensus 297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N 362 (794)
T KOG0276|consen 297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N 362 (794)
T ss_pred -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence 0111122333344433322211 011111 233333221 1111111234678899 8
Q ss_pred CCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001363 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
|+++++++ ||.-.||..-.-+ ..+-+.-....|++|.+..|.--.++.|+++ +..+. .+....
T Consensus 363 GrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke-----~ksi~~---- 425 (794)
T KOG0276|consen 363 GRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKE-----HKSIRP---- 425 (794)
T ss_pred CcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--eccee-----cccccc----
Confidence 98877655 8988898643211 1244556778999998888888888889988 33221 111111
Q ss_pred CCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
-..+.+--.|.+|.+..++.+++||..+++.++.+-. ....+.|+.+|.+++.++.| +.++..+
T Consensus 426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~-Sfyil~~ 489 (794)
T KOG0276|consen 426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDD-SFYILKF 489 (794)
T ss_pred ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecC-ceeEEEe
Confidence 1113334456777778899999999999999987542 35678999999988888755 4455543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=311.92 Aligned_cols=584 Identities=16% Similarity=0.231 Sum_probs=404.9
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
...+..|-.++|+|... .+.++-..|.|.+||..-+.++.. +.+|.++|..++|+|++.+
T Consensus 6 EskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qpl 65 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPL 65 (1202)
T ss_pred hcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCe
Confidence 34466899999999998 577778889999999999988875 6789999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
+++|+.|..|+||+..+.+++. ++.||-..|..+.|++.-. +++|+|.|.+|+||++.+++++..+.||...|.|
T Consensus 66 FVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMc 140 (1202)
T KOG0292|consen 66 FVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMC 140 (1202)
T ss_pred EEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEe
Confidence 9999999999999999987666 7889999999999999877 8999999999999999999999999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001363 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
..|+|+.| .++|+|-|.+||+||+...+....-.+ ++.-...+..+. .-++-...--....
T Consensus 141 AqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 141 AQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKHV 201 (1202)
T ss_pred eccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeeee
Confidence 99988764 899999999999999976554332221 010001111110 00111111223456
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
+.||. ..|+.++|+|.-..+++|++|..|++|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||
T Consensus 202 LEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 202 LEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred ecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 78888 899999999999999999999999999987655544444456677899999999999999999999999999
Q ss_pred CCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCC-----CCCCccceeeccccccceeccccccCccccc
Q 001363 651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 651 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~ 725 (1092)
+...+.++.++...+..+.++..|.....+.|-..|-+.|.-+. .-.++.+.-.- |..|+-+|+.+........
T Consensus 279 m~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVAS 357 (1202)
T ss_pred cccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeEe
Confidence 99999999999999999999999999999999999988884332 22344444333 7788888887755555554
Q ss_pred cccCCccccccEEEEEEecCCcEEEEee--cCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCC
Q 001363 726 LLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 803 (1092)
Q Consensus 726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~ 803 (1092)
+..+.. ...++.++.++|....++.++ .+|...++.++......... ... . ...
T Consensus 358 lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~------------~~~-------~----k~t 413 (1202)
T KOG0292|consen 358 LRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG------------KDV-------K----KGT 413 (1202)
T ss_pred ccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc------------hhh-------h----cCC
Confidence 443332 235678899999776555553 34777777766542110000 000 0 111
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
....+-.+.++-.+..-++..+.+-++.. +..+.+... ..+..+-+.- .|.+|+. ....|.+||++..+.+..+.
T Consensus 414 G~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 414 GEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred CCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe
Confidence 22233333332222222234444444432 222222211 2333444444 5655553 34579999999888777776
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEE
Q 001363 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 963 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd 963 (1092)
...|.-+.||+|..++|--+. .+|.|.+.+-. .+....... .|.+-+|..+|-+|.+..+.- + |-
T Consensus 489 --~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~------l~~sihEti----riksgawde~gVfiYtT~nHi-k-Ya 553 (1202)
T KOG0292|consen 489 --VSKVKYVVWSNDMSRVALLSK-HTITIADKKLE------LLCSIHETI----RIKSGAWDEDGVFIYTTLNHI-K-YA 553 (1202)
T ss_pred --cCceeEEEEcCccchhhhccc-ceEEEEecchh------heecchhee----EeeeceeccCceEEEEehhhh-h-hh
Confidence 467899999999988887664 45888876541 222222222 477888888888877643211 0 11
Q ss_pred cCCce--eeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce
Q 001363 964 AEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 964 ~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
+.+|. .+++ + ..++.- +--.|..++.-..|+.++..+++.-+.
T Consensus 554 l~~GD~GIikT-L---d~~iyi--tkv~gn~V~cl~rd~~~~~~~IDptEy 598 (1202)
T KOG0292|consen 554 LENGDSGIIKT-L---DKPIYI--TKVKGNKVFCLNRDGEIECLTIDPTEY 598 (1202)
T ss_pred hccCCcceEEe-c---ccceEE--EEeeCCEEEEEecCCCeEEEeechHHH
Confidence 11111 1111 0 112221 223577777777888888888776443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=296.54 Aligned_cols=292 Identities=22% Similarity=0.337 Sum_probs=268.2
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
+..+.|.||...|+.+-|+|+-. ++++++.|++|++||..+|+.... +.||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 56688899999999999999997 899999999999999999998765 8899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+..|++||+++.|-.+++||.++- .++...+.+|...|.+++|-|.|. ++++++.|.+|+.|+..+|.++++|.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999863 233336779999999999999998 8999999999999999999999999999
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC---------------CCEEEEEec
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN---------------GRRLFSCGT 549 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d---------------g~~l~~~~~ 549 (1092)
...|..+.. ..||.++++++.|.++++|-+.+..+...+..|+.+|.+++|.|. +.++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999998887 668899999999999999999999999999999999999999773 246666654
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
|++|++||+.+|.++.++.+|. +.|..++|+|.|++|+++.+|+++++||+.+++++..+..|.+ .++++.
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 7789999999999999999999 9999999999999999999999999999999999999997766 489999
Q ss_pred EccCCCEEEEEeCCCeEEEEEC
Q 001363 630 FNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
|..+..++++|+-|.++++|..
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999974
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=282.30 Aligned_cols=538 Identities=12% Similarity=0.156 Sum_probs=383.9
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.+-..-++|+. -=..+-+-|.|..+...+ +.+.+++++...... +.+|+..|.|++
T Consensus 56 LewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~ 111 (626)
T KOG2106|consen 56 LEWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMA 111 (626)
T ss_pred eEEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEe
Confidence 34455666764 333466778887443333 456777776533222 678999999999
Q ss_pred ECCCCCEEEEEeCCC--------EEEEEEccCCCcccceEEEcccccceeEEEEecCC--CcEEEEEEeCCCcEEEEECC
Q 001363 404 WSPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC--KQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 404 ~spdg~~las~~~d~--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~--~~l~l~s~~~d~~i~vwd~~ 473 (1092)
.+||.-.+|+|-..| .++|||..+-. .+..+......|.|++||+-. ..+..+--+.+..+.|||+.
T Consensus 112 vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~---TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWq 188 (626)
T KOG2106|consen 112 VHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS---TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQ 188 (626)
T ss_pred ecCCceeeccCcccccCCCcCCCeeeecccccce---eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhch
Confidence 999999999874333 59999987643 333566667789999999853 32233334566789999999
Q ss_pred CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE---ecC-CCCceEEEEEccCCCEEEEEec
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDA-PGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~-~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
.+......+.....|....|+|... -++.....|.+.+|+++.+..... +.. ...-|.+++|.++|..+ ++
T Consensus 189 k~~~~~~vk~sne~v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-Tg-- 263 (626)
T KOG2106|consen 189 KKAKLGPVKTSNEVVFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TG-- 263 (626)
T ss_pred hhhccCcceeccceEEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-ee--
Confidence 9998888888888899999998753 344455568999999987765443 222 22579999999999865 33
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
+.++.|.+|+..+.+..+....|. +.|.+++...+|. |++|+.|..|..|| ..-+.++..+.+.....+..++
T Consensus 264 --DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 264 --DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred --cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEe
Confidence 447889999998888777766666 9999999999886 55699999999999 5555566555555555566555
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccc
Q 001363 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 709 (1092)
=...+ +++|+..+.|..=.+.++-.+.
T Consensus 337 e~~~d--i~vGTtrN~iL~Gt~~~~f~~~--------------------------------------------------- 363 (626)
T KOG2106|consen 337 EGKGD--ILVGTTRNFILQGTLENGFTLT--------------------------------------------------- 363 (626)
T ss_pred cCCCc--EEEeeccceEEEeeecCCceEE---------------------------------------------------
Confidence 33222 6666665555433333221110
Q ss_pred cceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCC
Q 001363 710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 789 (1092)
Q Consensus 710 i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 789 (1092)
..+|......++..|+...+++++.|+.+++|+ . .+ .+|...
T Consensus 364 --------------------v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k-------------~~wt~~--- 405 (626)
T KOG2106|consen 364 --------------------VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HK-------------LEWTKI--- 405 (626)
T ss_pred --------------------EEecccceeeEEcCCChhheeeccCcceEEEcc-C-Cc-------------eeEEEE---
Confidence 123666777788888888899999999999987 1 11 112211
Q ss_pred ceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 001363 790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 868 (1092)
Q Consensus 790 ~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 868 (1092)
-..+..|+.|+|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+.|+.|
T Consensus 406 -----------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 406 -----------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHI 471 (626)
T ss_pred -----------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeE
Confidence 35678899999999 888887 69999999999665554444 78999999999 99999999999999
Q ss_pred EEEEcCCce-eeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee---------ee---eecCCCCcC
Q 001363 869 LIYNARSSE-VISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGVMT 934 (1092)
Q Consensus 869 ~iwd~~~~~-~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~---------~~---~~~~~~~~~ 934 (1092)
+||.+.... ...+.. .|..+|+.+.||+|+++|.+.+.|-.|..|.-..-+.... .+ .....+.
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s-- 549 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGS-- 549 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEeccc--
Confidence 999987643 332222 2448999999999999999999999999994332111110 00 1111111
Q ss_pred CCCCceEEEEccCCCEEEEEeC-CcEEEEEcCCce--eeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 935 LAPSETHIQFHKDQTRFLLVHE-THLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 935 ~~~~v~~l~~s~dg~~la~~~d-~~i~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
....|..++-+...+++|++.| |+|++|...-.+ .....+.+|++-|++++|+.+..++++.+.|.+|..|++
T Consensus 550 ~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 550 DGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 1235677788888899999754 899999886333 233346789999999999999999999889999999986
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=287.82 Aligned_cols=335 Identities=15% Similarity=0.190 Sum_probs=290.5
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...+.++..|++.|.+++.+|+.+ ++|||+.|....||++.+|+.... +.+|+..|+++.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~ 113 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS 113 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence 345688999999999999999776 899999999999999999997765 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
||.||.+||+|+.+|.|+||+..++.... .+...-+.|.-+.|+|-+. +|+.|+.||.+-+|.+.++...+.+.|
T Consensus 114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence 99999999999999999999999987554 4545666788999999988 899999999999999999888999999
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
|..++++=.|.| +|+.++++..||+|++|+..+..+....... .....++.++.++..++.|.. ++.+++.+.
T Consensus 189 h~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~ 262 (399)
T KOG0296|consen 189 HNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN 262 (399)
T ss_pred CCCCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence 999999999955 6899999999999999999999988877643 346678899999999988875 566888888
Q ss_pred CCCeEEEEEee--------ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 563 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 563 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
.+|+.+....+ +......|.++.++..-+..++|+.||+|.|||+...++....... ..|..+.|-+ .
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he---~~V~~l~w~~-t 338 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE---DGVTKLKWLN-T 338 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC---CceEEEEEcC-c
Confidence 88888877663 2312234555566666778899999999999999988777776554 3489999998 7
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceec
Q 001363 635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~ 714 (1092)
.+|++++.+|.|+.||.++++......+|...|.+++++ |+++++++++.|++.++|+
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence 899999999999999999999999999999999999996 7899999999999999987
Q ss_pred c
Q 001363 715 P 715 (1092)
Q Consensus 715 ~ 715 (1092)
.
T Consensus 397 v 397 (399)
T KOG0296|consen 397 V 397 (399)
T ss_pred c
Confidence 5
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=283.62 Aligned_cols=339 Identities=18% Similarity=0.230 Sum_probs=286.8
Q ss_pred EEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEE
Q 001363 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1092)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd 515 (1092)
+|..|+..|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|...|+++.|+ .+|.+|++|+.+|.|+||+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc--cCceEEEecCCCccEEEEE
Confidence 6889999999999999777 89999999999999999999999999999999999995 5789999999999999999
Q ss_pred cCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE
Q 001363 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1092)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1092)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++-.|.|+|+.+++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999988877888999999999999999976 6669999999988889999988 89999999999999999
Q ss_pred EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCC
Q 001363 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
+..||+|++|++.+++++..+....+ ....++.++..+..++.|..++.+.+-+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 99999999999999999998875543 3567899999999999999988888766555432221110
Q ss_pred CccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC
Q 001363 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1092)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 755 (1092)
.+..+....
T Consensus 274 ---------------------------------------------------------------------~~~~l~~~~-- 282 (399)
T KOG0296|consen 274 ---------------------------------------------------------------------TVPELKPSQ-- 282 (399)
T ss_pred ---------------------------------------------------------------------CCccccccc--
Confidence 000000000
Q ss_pred CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCce
Q 001363 756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 834 (1092)
Q Consensus 756 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~ 834 (1092)
......|..+.++..-.+.|+|+ ||+|.|||+...+
T Consensus 283 -------------------------------------------e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 283 -------------------------------------------EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred -------------------------------------------hhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 00122334445555666778888 8999999998877
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 835 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 835 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd 914 (1092)
....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||..+|.+++++|+.++++|+|.|++.+|++
T Consensus 320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 666555 888899999987 56899999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 001363 915 VD 916 (1092)
Q Consensus 915 ~~ 916 (1092)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 75
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=288.73 Aligned_cols=299 Identities=18% Similarity=0.255 Sum_probs=269.1
Q ss_pred cCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
+..|-.+.+.+.||-+.|.|+++.|-.. ++++|+.|++|+|||+.+|+...+ +.||-..|
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~v 196 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETV 196 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhhee
Confidence 4556678899999999999999999987 799999999999999999998876 88999999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
..+++|+--.||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.+++|||+++...+.
T Consensus 197 r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 197 RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred eeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEE
Confidence 999999999999999999999999999998887 5779999999999999988 89999999999999999999999
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+.||..+|.++.+.+. ...+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+ .|..
T Consensus 272 ~l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik~ 344 (460)
T KOG0285|consen 272 VLSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIKQ 344 (460)
T ss_pred EecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----ccee
Confidence 99999999999988654 3579999999999999999999999999999999999999999999998753 4999
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe---CCC---CCCCCceEEEccC
Q 001363 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNKN 633 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~ 633 (1092)
|++..|..+..+.+|. ..+.+++.+.|+ ++++|+++|.+.+||.++|-..+... .++ ....|.+.+|...
T Consensus 345 w~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt 420 (460)
T KOG0285|consen 345 WKLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT 420 (460)
T ss_pred ccCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc
Confidence 9999999999998888 889999998875 88999999999999999986655442 221 2245889999999
Q ss_pred CCEEEEEeCCCeEEEEECCCC
Q 001363 634 GTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 634 ~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|..|++|..|.+|++|.-...
T Consensus 421 g~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 421 GSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred CceEEeccCCcceEEEecccc
Confidence 999999999999999986643
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=266.78 Aligned_cols=295 Identities=17% Similarity=0.261 Sum_probs=252.1
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeecccc
Q 001363 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ 577 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 577 (1092)
-+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++ ...|++||+++++ ++.++.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~-- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT-- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence 4899999999999999999999999999999999999999999999987 4459999999775 588899988
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee
Q 001363 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
..|.++.|..+|+++++||+||+++|||++...+.+.+... ..|+++..+|+...|+++..+|.|++||+.+....
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 89999999999999999999999999999996666666543 56999999999999999999999999999865332
Q ss_pred eecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccE
Q 001363 658 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 737 (1092)
Q Consensus 658 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i 737 (1092)
..+- |. ....|
T Consensus 160 ~~li-------------------------------------------------------------------Pe--~~~~i 170 (311)
T KOG0315|consen 160 HELI-------------------------------------------------------------------PE--DDTSI 170 (311)
T ss_pred cccC-------------------------------------------------------------------CC--CCcce
Confidence 2111 11 33568
Q ss_pred EEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE
Q 001363 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL 817 (1092)
Q Consensus 738 ~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l 817 (1092)
.++++.|||.+++++...|..++|++...... .... ....+ +.|...+..+.+|||+++|
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------s~l~-------P~~k~--~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------SELE-------PVHKF--QAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------ccce-------Ehhhe--ecccceEEEEEECCCCcEE
Confidence 89999999999999999999999998653210 0000 00111 2489999999999999999
Q ss_pred EEEe-CCeEEEEEcCCc-eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEc
Q 001363 818 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 895 (1092)
Q Consensus 818 ~~~s-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 895 (1092)
|+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|+.+++|++..++.+....+|..+..|++..
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9998 899999999988 66778899999999999999 99999999999999999999999999999999988888764
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=266.82 Aligned_cols=292 Identities=22% Similarity=0.338 Sum_probs=241.1
Q ss_pred eeeecccCCCCceEEeecCC-CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 326 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spd-g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+.+++|++.|+.+||+|- |. +||+|+.|+.|+||+...+.-... +..+-.+|+..|.++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 45889999999999999999 76 899999999999999986433221 22234579999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC---ceeEEE
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 481 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~ 481 (1092)
+|.|++||+++.|.++.||.-..++ .....++.||...|.|++||++|. +|++|+.|++|-||.+..+ +++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999988654 455668999999999999999999 8999999999999998754 567888
Q ss_pred ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC---CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
+.|...|..+.|+|+. .+|++++.|.+|++|+-.. -.+..++.++...|.+++|++.|..|++++. +++++
T Consensus 147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 9999999999999876 4999999999999997663 2357788899999999999999999999976 67799
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eEEEEeCCCCCCCCceEEEcc
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
+|-..+. +.+ .+...++.+.|. ...|++++.|+.|++|.-...- ++... .+.+...|+++.|+|
T Consensus 221 Iw~~~~~-----~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 221 IWRLYTD-----LSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP 290 (312)
T ss_pred eeeeccC-----cch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence 9975421 222 124788999998 4679999999999999765421 11111 123345799999999
Q ss_pred C-CCEEEEEeCCCeEEEEECC
Q 001363 633 N-GTLLAVIANENRIKILETP 652 (1092)
Q Consensus 633 ~-~~~l~~~~~dg~i~iw~~~ 652 (1092)
. .++|+++++||.+++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 4 7899999999999999864
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=295.09 Aligned_cols=500 Identities=17% Similarity=0.197 Sum_probs=356.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+...+..|..++|+|...+++++-..|.|++||..-+.++. .+.+|.++|..++|+|++. +++|||.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44567889999999999999999999999999999998777 6889999999999999999 999999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
..+.+++.++.||.+.|..+.|++.- .+++|+|.|.+|+||++.+.+++..+++|.+-|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999997644 69999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE---EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
+.+|++||+..-+....-.+.- ...+ .+... +-|+.|- -....+.+| ...|+-+
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~--e~~~-------~~~~~~~dLfg~~Da----------VVK~VLEGH--DRGVNwa 212 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSL--EDQM-------RGQQGNSDLFGQTDA----------VVKHVLEGH--DRGVNWA 212 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCc--hhhh-------hccccchhhcCCcCe----------eeeeeeccc--ccccceE
Confidence 5679999986543322211100 0011 11111 1122222 222344544 4579999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCc--eeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecc
Q 001363 629 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1092)
+|+|.-.++++|++|..|++|.....+ .+.+.++|.+.|.++.|+ |...++++.+.
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsE 270 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSE 270 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCC
Confidence 999999999999999999999988664 456789999999999997 56788999999
Q ss_pred ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCC
Q 001363 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 786 (1092)
Q Consensus 707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1092)
|+++|+||+......+++.. ...+...++..|..+.++++...| +.+|.++.
T Consensus 271 DksirVwDm~kRt~v~tfrr------endRFW~laahP~lNLfAAgHDsG-m~VFkleR--------------------- 322 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNLFAAGHDSG-MIVFKLER--------------------- 322 (1202)
T ss_pred CccEEEEecccccceeeeec------cCCeEEEEEecCCcceeeeecCCc-eEEEEEcc---------------------
Confidence 99999999987766655532 567788999999999665555544 45555432
Q ss_pred CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--eEEecCC---CCCeEEEEEcCCCCCEEEE
Q 001363 787 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIMPP---SPTATSLAFNPHDNNVIAI 861 (1092)
Q Consensus 787 ~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~s~~d~~~las 861 (1092)
+.+ +.++ ++..|....|..|+-+|+.+.+. +..++.. ..+..++.++|..+..|++
T Consensus 323 ---------------Erp--a~~v--~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 323 ---------------ERP--AYAV--NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred ---------------cCc--eEEE--cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 222 2333 34445555688999999987553 3344433 3678999999955555555
Q ss_pred EeCC-CcEEEEEcCCceee-Ee-ecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCC
Q 001363 862 GMDD-STILIYNARSSEVI-SK-LEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 937 (1092)
Q Consensus 862 g~~d-g~v~iwd~~~~~~~-~~-l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 937 (1092)
...| |...++.+...... .. -.. ......++ |-..+++.+---.+..+.+-++.....+ -+..+.
T Consensus 384 s~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~-fvarNrfavl~k~~~~v~ik~l~N~vtk---kl~~~~------- 452 (1202)
T KOG0292|consen 384 SNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGAL-FVARNRFAVLDKSNEQVVIKNLKNKVTK---KLLLPE------- 452 (1202)
T ss_pred eccCCCeEEEEEecCcccccCCchhhhcCCCCceE-EEEecceEEEEecCcceEEecccchhhh---cccCcc-------
Confidence 4433 45555655432110 00 000 11112222 2222233332233555666666553211 122221
Q ss_pred CceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 938 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
.+..+-+..+|.+|+. +...|.+||++..+.+..+. -..|..+.||+|..+++--+. .+|.|.+..
T Consensus 453 ~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~K-h~i~i~~kk 518 (1202)
T KOG0292|consen 453 STDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLSK-HTITIADKK 518 (1202)
T ss_pred cccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhccc-ceEEEEecc
Confidence 2445666677776655 45679999999888877754 457889999999888776653 466666643
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=270.75 Aligned_cols=523 Identities=14% Similarity=0.194 Sum_probs=375.5
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--------cEEEEEC
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA 472 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--------~i~vwd~ 472 (1092)
.+-+-|.|..+.... +.+.+++++...+. .+.+|...|.|++.+||-- .+++|-.-| .+++||.
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 356778887776543 34566777653211 3669999999999999865 566554333 5999999
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCE-EEEEec
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR-LFSCGT 549 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~-l~~~~~ 549 (1092)
.+-..++.+......|.+++|++...|.++.... .+..+.+||+..+............+....|.|.+.. +++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 9988899888888899999999888777776653 4556899999988877777777778889999996655 45554
Q ss_pred CCCCceeEEEEeCCCCeEEEE---EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 550 SKEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
.+.++.|+.+.+...+. +..+. ...|.+++|.++|. +++|..+|.|.||+..+.+..+....| ...|.
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~ 291 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVF 291 (626)
T ss_pred ----CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceE
Confidence 67799999998876654 44444 36799999999875 889999999999999887777766644 45689
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecc
Q 001363 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1092)
+++.-.+|.+|- |+.|..|..||-. -+..+...
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~e--------------------------------------------- 324 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETE--------------------------------------------- 324 (626)
T ss_pred EEEEecCccEee-cCccceEEecccc-cccccccc---------------------------------------------
Confidence 999999998766 9999999999922 21111111
Q ss_pred ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCC
Q 001363 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 786 (1092)
Q Consensus 707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1092)
+|. ..+.|..++-...+ ++.+...+.|..=.++.
T Consensus 325 ---------------------lPe--~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~--------------------- 358 (626)
T KOG2106|consen 325 ---------------------LPE--QFGPIRTVAEGKGD--ILVGTTRNFILQGTLEN--------------------- 358 (626)
T ss_pred ---------------------Cch--hcCCeeEEecCCCc--EEEeeccceEEEeeecC---------------------
Confidence 111 22333333322212 45554444443322211
Q ss_pred CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001363 787 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 787 ~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
+..+. ..+|......++.+|+...+++++ |+.+++|+ ..+...+.. ...++.|+.|+| .+ .+|.|+..
T Consensus 359 -~f~~~-----v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~ 427 (626)
T KOG2106|consen 359 -GFTLT-----VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTAT 427 (626)
T ss_pred -CceEE-----EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeecc
Confidence 11111 124888899999999999888887 79999999 444444333 456889999999 77 99999999
Q ss_pred CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEc
Q 001363 866 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 945 (1092)
Q Consensus 866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 945 (1092)
|...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|+||.++.+..... .+....+ ..|+.+.||
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS 500 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWS 500 (626)
T ss_pred ceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeec
Confidence 9999999999665555444 88999999999999999999999999999987553322 2222233 369999999
Q ss_pred cCCCEEEE-EeCCcEEEEEcCCceeee-----------------eeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 946 KDQTRFLL-VHETHLAIYEAEELTCLK-----------------QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 946 ~dg~~la~-~~d~~i~lwd~~~~~~~~-----------------~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
+|+++|.+ +.|-.|..|.....+.+. .....|+..|..++-|.+.+++++|...|.|++|..
T Consensus 501 ~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 99999999 778889999443222111 112335777788888889999999999999999988
Q ss_pred CCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1008 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
+--...+.+ .....|++.|. +++|.-.| ..|++.+.|..|..|++
T Consensus 581 Pc~s~rA~~-----he~~ghs~~vt--~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 581 PCSSPRAPS-----HEYGGHSSHVT--NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccCCCcccc-----eeeccccceeE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 754443222 22234667677 55666544 55666669999999987
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=286.35 Aligned_cols=279 Identities=19% Similarity=0.300 Sum_probs=252.3
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|++++|+.+|. +||+|+.||.++||+...+ .+.+ +..|+++|.++.|+.+|.||+++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~t-------------------l~~HkgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIST-------------------LGQHKGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence 5899999999998 8999999999999997644 4433 66799999999999999999999
Q ss_pred eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 494 (1092)
+.|+++.+||..+|+..+ .+.-|..+-..+.|-.+.. +++++.|+.|+|+-+...+++.++.+|.++|.++.|.
T Consensus 295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 999999999999987665 4556888777889987776 9999999999999999999999999999999999996
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC---------CEEEEEecCCCCceeEEEEeCCCC
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------RRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg---------~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
+ .+.+|++++.|+++++|..........+..|...|..+.|+|+| ..+++++. +++|++||...+
T Consensus 369 ~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g 442 (524)
T KOG0273|consen 369 P--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG 442 (524)
T ss_pred C--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence 5 56899999999999999998888889999999999999999965 35777765 778999999999
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1092)
.++..|..|. .+|++++|+|++.++++|+.||.|.+|+..+++..+.....+ .|..++|+.+|..+.++..|+.
T Consensus 443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999988 999999999999999999999999999999999999987654 4899999999999999999999
Q ss_pred EEEEECC
Q 001363 646 IKILETP 652 (1092)
Q Consensus 646 i~iw~~~ 652 (1092)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998864
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-30 Score=273.13 Aligned_cols=550 Identities=12% Similarity=0.114 Sum_probs=387.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
..+|.++|||.+.+.||.+-.+|.|.||++..+-.... .+.++. ..|.+++|++.++ |.+.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 46899999999999999999999999999998654433 455554 5799999997665 99999999999999999
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEccCCCEEEEEecCCC
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
++.++.+....+.|.+++.++.. ..++.|+.||.+..++......... +....+.+.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999997755 6899999999777777666555443 3334578999999999999999986
Q ss_pred CceeEEEEeCCCCeEEEEEeec----cc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 553 GESFLVEWNESEGAIKRTYQGL----QL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~----~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
++.|++||..++..+...... .. ..--|+++.|-.+ ..+++|...|+|.+||...+.+++....+. ..|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhh--cceeE
Confidence 778999999999877632211 10 1234778888755 579999999999999999999999888774 46999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++..+++.++++++.|+.|.-|...++..-
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------- 280 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------- 280 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence 999999999999999999988877654210
Q ss_pred cccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCC
Q 001363 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1092)
Q Consensus 708 ~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1092)
|-.. .+...|...|.++++.++ .+++++.|.++.+-.....+. .+
T Consensus 281 -----wv~~-----------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~--- 325 (691)
T KOG2048|consen 281 -----WVIN-----------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD--- 325 (691)
T ss_pred -----eeee-----------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---
Confidence 1100 011237778888888887 688888888777632211000 00
Q ss_pred CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---------eeEEecCCCCCeEEEEEcCCCCCE
Q 001363 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---------TILTIMPPSPTATSLAFNPHDNNV 858 (1092)
Q Consensus 788 g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~s~~d~~~ 858 (1092)
. .+.... .. -.-+...|..++++.-.+..+.+|.+.+.- +.+-.......|.+.+.|| +|++
T Consensus 326 h--~~~~~~----p~--~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~ 396 (691)
T KOG2048|consen 326 H--RQKNLF----PA--SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNL 396 (691)
T ss_pred h--hccccc----cc--cceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCE
Confidence 0 000000 00 112345566666766677888889876541 1222233456899999999 9999
Q ss_pred EEEEeCCCcEEEEEcCCceee-----EeeccccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCC
Q 001363 859 IAIGMDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGV 932 (1092)
Q Consensus 859 lasg~~dg~v~iwd~~~~~~~-----~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 932 (1092)
++.+. -..++||.+.....+ .....-.-....+.|+-|++.++.++ .+..+.+.++++...+....++.. ..
T Consensus 397 Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~ 474 (691)
T KOG2048|consen 397 IAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AK 474 (691)
T ss_pred EEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cC
Confidence 99876 456888888753222 12222344677899999998888888 777888888887654333233222 12
Q ss_pred cCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCC
Q 001363 933 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 933 ~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
. +.|..++.||||++||+ +..+.|.+|++++++.-... ..-...|+.++|+| +-..|+.+..++.+.-||++..
T Consensus 475 ~---~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~-~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 475 C---PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK-VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred C---CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch-hccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 2 37999999999999999 78899999999988765432 22358899999995 5567888889999999999544
Q ss_pred ceEEeeccc--cccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1011 EVQCRILST--AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1011 ~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.+ .++... ..+|..+..-.-....+.|+|.+ ...+...+.+-+++.|+.
T Consensus 551 ~l-~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n-~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 551 NL-TRWSKNNTRNLPKEPKTLIPGIPGISFDPKN-SSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred hh-hhhhhccccccccChhhcCCCCceEEeCCCC-ccEEEEEcCcEEEEEecC
Confidence 42 222100 11111111111112346677753 444445556667777763
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=269.39 Aligned_cols=290 Identities=18% Similarity=0.234 Sum_probs=252.2
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
..|.||+++|..+.|+|+|. ++|+|+.|..|.+|++.....-. -.+++|.++|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence 55789999999999999998 79999999999999976433221 127799999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
+..|++++.|.+|+.||+++|++.+ .+++|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ....
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999998777 67899999999996666665 78899999999999999999888875 4567
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC----
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES---- 563 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~---- 563 (1092)
++++.|.. ++..+++|+-|+.|++||++.......+.+|..+|+.+..+++|.++.+-+. +..+++||.+
T Consensus 177 ltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 88999854 5568999999999999999999999999999999999999999999998875 7789999987
Q ss_pred CCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 564 EGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
...++..+.++... ......++|+|++..+-+|+.|..+++||......+..+++|. ..|+++.|+|....+.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEecc
Confidence 34557888887511 1345678999999999999999999999999989998888764 46999999999999999999
Q ss_pred CCeEEEE
Q 001363 643 ENRIKIL 649 (1092)
Q Consensus 643 dg~i~iw 649 (1092)
|.+|++=
T Consensus 329 dk~i~lg 335 (338)
T KOG0265|consen 329 DKTIYLG 335 (338)
T ss_pred CceeEee
Confidence 9998874
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=267.64 Aligned_cols=286 Identities=18% Similarity=0.296 Sum_probs=249.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|.+.|..+.|.+|+. .+++++.|++|+.||
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWD 118 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEe
Confidence 78999999999999999999999999999999986543 33447889999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+++|++++.+++|...|+++... ..+-.++.+++.||++++||++......++. ....++++.|..++..+++++-
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI-- 194 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI-- 194 (338)
T ss_pred cccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc--
Confidence 99999999999999999999843 2344688899999999999999877766654 3447899999999999999987
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeCCCCCCC--C
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPE--N 625 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~--v 625 (1092)
++.|.+||++.+.....+.||. ++|+.+..+|+|.++++-+.|.++++||++.. +++..+..+.+.-. .
T Consensus 195 --dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 --DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred --cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 4459999999999999999999 99999999999999999999999999998753 44666666544332 4
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
..++|+|+++.+.+|+.|..+++||......+..+.+|...|.++.|.| ....+.+++
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~~ 327 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSCS 327 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEec
Confidence 5789999999999999999999999999999999999999999999985 455667777
Q ss_pred cccccce
Q 001363 706 AENKSEV 712 (1092)
Q Consensus 706 ~d~~i~l 712 (1092)
.|.++.+
T Consensus 328 sdk~i~l 334 (338)
T KOG0265|consen 328 SDKTIYL 334 (338)
T ss_pred cCceeEe
Confidence 7776654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=259.14 Aligned_cols=292 Identities=15% Similarity=0.215 Sum_probs=253.4
Q ss_pred CCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001363 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
.+|...+.+|..|.+.|.++.|+-||+| ..+++.|.+|++|+...|.++++ ..+|...|.
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl 63 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL 63 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence 4577778899999999999999999995 67778899999999999999987 779999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC--Ccee
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSRT 478 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~--~~~~ 478 (1092)
.++.+.|...+++|+.|..|.+||+++|+.++ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||-++ -+++
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence 99999999999999999999999999998777 7899999999999999999 899999999999999875 4678
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
+.+......|.++.+ .+..+++|+.||++|.||++.+.....+ .+.+|++++|++|++..++++. ++.++
T Consensus 139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlr 208 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLR 208 (307)
T ss_pred chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceee
Confidence 888888899999987 4468999999999999999987654443 4568999999999999988876 67799
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
+.|-.+|+++..+.||......+ .++++.....+++|++||.|++||+.....+..+..+.. ..+..++++|....++
T Consensus 209 LlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI 286 (307)
T ss_pred ecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence 99999999999999998333333 456777778999999999999999999999999887754 4578999999877777
Q ss_pred EEeCCCeEEEEE
Q 001363 639 VIANENRIKILE 650 (1092)
Q Consensus 639 ~~~~dg~i~iw~ 650 (1092)
++... .+..|.
T Consensus 287 ~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 287 TATGH-GDLFWY 297 (307)
T ss_pred EecCC-ceecee
Confidence 77654 455554
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=275.93 Aligned_cols=285 Identities=20% Similarity=0.286 Sum_probs=264.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|..+|+.+-|+|+-...++++.|++|++||..+|+..+ .++||+..|..++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 77899999999999999999999999999999999998755 7899999999999999999 899999999999999
Q ss_pred CCC-CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 472 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.++ .++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++-++.++.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67888999999999999998764 69999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCceEEE
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1092)
+.+|++|-..++++...+..|+ .+|.+++|.|. ++++.+++.|++|++||+.++.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 6679999999999999999998 89999999763 25889999999999999999999999
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCC
Q 001363 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (1092)
+.+|. ..|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.
T Consensus 330 L~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh---------------------- 385 (406)
T KOG0295|consen 330 LVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH---------------------- 385 (406)
T ss_pred Eeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence 98775 479999999999999999999999999999999999999999999999886
Q ss_pred CCCccceeeccccccceec
Q 001363 696 EDVKPEISVEAENKSEVEK 714 (1092)
Q Consensus 696 ~d~~~l~s~~~d~~i~lw~ 714 (1092)
.+..++++|+-|.++++|.
T Consensus 386 ~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCceEEeccccceeeeee
Confidence 3455899999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=312.20 Aligned_cols=294 Identities=21% Similarity=0.350 Sum_probs=256.5
Q ss_pred eeecccC-CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC--eeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 327 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 327 ~~~l~~h-~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.+.+.+| ...|.|+.|||||+ .+++++.|+.+++|+..+++ .... +.+|...|..++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 5666665 78999999999999 59999999999999997776 3332 578999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEc-cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
|+|||+++++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 9999999999999999999999 4444444 7889999999999999997 89999999999999999999999999
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCC--ceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~--~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
+|.+.|++++| .+++.+|++++.||.|++||+.++. ....+..+.. +++++.|+|++.++++++. ++.+.
T Consensus 286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999 4577899999999999999999988 3455554444 5999999999999999986 66799
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
+||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..++++|..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 99999999999999998321245556667889999999999999999999999999988775 45688999999999999
Q ss_pred EEe--CCCeEEEEECC
Q 001363 639 VIA--NENRIKILETP 652 (1092)
Q Consensus 639 ~~~--~dg~i~iw~~~ 652 (1092)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 68999999754
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=283.92 Aligned_cols=286 Identities=21% Similarity=0.306 Sum_probs=249.3
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
..-+..|..|.|.|+|++ |++|+..|.+.+|+..+- .| ..++..|..+|+++.||++|.+
T Consensus 93 NKvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nF-------------EtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NF-------------ETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred cccccceeeEEEcCCCce-eEeecccccEEEecCcee------eH-------------HHHhhhhcccceeEEEccCCCE
Confidence 334568999999999996 789999999999997331 11 1237789999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcc-cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
+++|+.+|.|++|+..-.... .+.+ |...|++++|||+.. .+++|+.||+|+|||....+.-..+.||.-.|.
T Consensus 153 miSgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred EEEcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 999999999999998764322 2334 558999999999888 799999999999999999988888999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
++.|+|.. .+|++++.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.+.
T Consensus 227 svdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~ 300 (464)
T KOG0284|consen 227 SVDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELF 300 (464)
T ss_pred eeccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHH
Confidence 99998865 59999999999999999999999999999999999999999999999986 6679999999999999
Q ss_pred EEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001363 570 TYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
.+++|. ..|.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|=|..|++|+.|.++++
T Consensus 301 ~~r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 301 TYRGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred Hhhcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceee
Confidence 999998 899999999975 4556689999999999986666655543 34467999999999999999999999999
Q ss_pred EECC
Q 001363 649 LETP 652 (1092)
Q Consensus 649 w~~~ 652 (1092)
|...
T Consensus 377 w~r~ 380 (464)
T KOG0284|consen 377 WTRN 380 (464)
T ss_pred eccC
Confidence 9755
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=269.17 Aligned_cols=294 Identities=14% Similarity=0.233 Sum_probs=258.4
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
++.+|.+.|.|+++-|..+++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 477899999999999999999999999999999999996554 7889999999999999888 89999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|..+|.++.+.|-...+++|+.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999998765 58999999999999999999999999999999999999998889999976
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
+.+|++||+..|+...++..|. ..|.+++.+|....+++++.|. |+-|++..|..+..+..+. ..+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~--~iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN--AIINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc--ceeeeeee
Confidence 7779999999999999998888 8999999999998889888765 8999999999999877664 45888888
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001363 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1092)
+.|+ ++++|+++|.+.+||.+++..++.......+ |+
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------------GS----- 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------------GS----- 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------------Cc-----
Confidence 8776 7889999999999999988665544211000 00
Q ss_pred ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeec
Q 001363 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 764 (1092)
Q Consensus 711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~ 764 (1092)
......|.+.+|...|.+|+++..|.+|++|.-+
T Consensus 406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred --------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 0134568888999999999999999999999743
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=277.11 Aligned_cols=292 Identities=16% Similarity=0.200 Sum_probs=251.5
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
++..|.+.|..+.||++|+|||+++.|.+..||++.....++...++.+|..+|..+.||||.+ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 3778999999999999999999999999999999987766777778999999999999999999 79999999999999
Q ss_pred ECCCCceeEEEe-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCceEEEEEccCCCEEEEEe
Q 001363 471 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 471 d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
|+.+|.+.+.+. +|...+.+++|.| ||..+++|+.|+++..||++.... ..+.+ ....|.+++.++||+++++..
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999988774 3568899999955 778999999999999999876542 22222 234689999999999999987
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
. +..|++++..+.........+ .+|++.+.+.+++++++--.+..+++||++....+....++.....+..-
T Consensus 374 ~----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 374 V----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred c----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence 6 556999998877665544443 58999999999999999999999999999988888888777655556666
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 629 CFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 629 ~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
||.- +..++++|++|+.|+||+..+++++..+.||...|.+++++| .+..++|+++.|
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDD 504 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDD 504 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCC
Confidence 7765 568999999999999999999999999999999999999996 466779999999
Q ss_pred cccceeccc
Q 001363 708 NKSEVEKPL 716 (1092)
Q Consensus 708 ~~i~lw~~~ 716 (1092)
|+||+|-..
T Consensus 505 gtIRIWg~~ 513 (519)
T KOG0293|consen 505 GTIRIWGPS 513 (519)
T ss_pred CeEEEecCC
Confidence 999999864
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=287.90 Aligned_cols=295 Identities=16% Similarity=0.257 Sum_probs=253.1
Q ss_pred CCcceeeecccCCCCceEEeecC-CCceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 322 FPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~sp-dg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
+|+..+.++.||+..|+++.|.| .+. ||++|+.|+.|+||++-. +.++++ +.+|..+|
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V 261 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV 261 (503)
T ss_pred ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence 68899999999999999999999 665 999999999999999977 777765 77899999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
..++|+++|..+++++.|+.|++||+++|+++.. +. ....++|+.|.||+.. .+++|+.|+.|+.||+++++.++
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence 9999999999999999999999999999987763 22 2346889999999955 78899999999999999999999
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
++..|-+.|..+.|.+ ++.++++.+.|+.+++|+.+..-.... .........++..+|++.++++-+. ++.|.
T Consensus 337 eYd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ 410 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA 410 (503)
T ss_pred HHHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence 9999999999999954 778999999999999999987766543 3334456778999999999988765 66788
Q ss_pred EEeCCC---CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CC
Q 001363 559 EWNESE---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NG 634 (1092)
Q Consensus 559 iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~ 634 (1092)
++.... ....+.+.||... +--..+.|+|||.+|++|+.||.+.+||.++-+++..+..|. ..+..+.|+| ..
T Consensus 411 ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEP 487 (503)
T ss_pred EEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCc
Confidence 887543 2344567787632 445678999999999999999999999999999999998774 4588999999 46
Q ss_pred CEEEEEeCCCeEEEEE
Q 001363 635 TLLAVIANENRIKILE 650 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~ 650 (1092)
..+|+++.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 6899999999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=250.31 Aligned_cols=293 Identities=16% Similarity=0.241 Sum_probs=238.2
Q ss_pred ccccccEEEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001363 731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 809 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~ 809 (1092)
.+|.+++..++|+|- |..|++++.|..|++|+..... -|. .......+|...|++++
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~--------ck~vld~~hkrsVRsvA 68 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT--------CKTVLDDGHKRSVRSVA 68 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE--------EEEeccccchheeeeee
Confidence 348889999999999 8999999999999999865310 011 11111225999999999
Q ss_pred EecCCCEEEEEe-CCeEEEEEcC--CceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc---eeeEeec
Q 001363 810 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE 883 (1092)
Q Consensus 810 ~s~dg~~l~~~s-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~ 883 (1092)
|+|.|++||+++ |.++.||.-. +.+++.++.+|.++|.|++|++ +|++||+++.|+.|-||.+..+ ++...|+
T Consensus 69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999 8999999876 4578999999999999999999 9999999999999999999854 5789999
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEE
Q 001363 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY 962 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lw 962 (1092)
+|+..|..+.|+|...+|+|+|.|.+|++|+-..+ ....+.+.+.++.. .|.+++|.+.|..|++ +.|++++||
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEee
Confidence 99999999999999999999999999999988731 12567888888876 7999999999998888 578999999
Q ss_pred EcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCC
Q 001363 963 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus 963 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1042 (1092)
...+ .+..-|++.+..+.|. + ..|++++.|+.|+++.-..+-.-..+... ....+.|...|+ ++.+.|..
T Consensus 223 ~~~~-----~~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVN--sV~w~p~~ 292 (312)
T KOG0645|consen 223 RLYT-----DLSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVN--SVQWNPKV 292 (312)
T ss_pred eecc-----CcchhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHH-Hhhhcccccccc--eEEEcCCC
Confidence 9652 2334578899999998 4 47999999999999987754222223211 222233566666 67899965
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 001363 1043 PTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1043 ~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.++|++|++||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999874
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-28 Score=262.07 Aligned_cols=504 Identities=15% Similarity=0.185 Sum_probs=351.6
Q ss_pred cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecC-CcCeEEEeecccCCccEEEEEecCCeEEEEEcC
Q 001363 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517 (1092)
Q Consensus 440 h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~ 517 (1092)
...+|.++||+.+++ .|+.+-.||.|.+|++..+=.. ..+.++ ...|.+++|. ++..|++.+.+|.|..||+.
T Consensus 24 ~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEecc
Confidence 456799999999999 6999999999999999876433 455554 4579999996 45689999999999999999
Q ss_pred CCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe
Q 001363 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1092)
Q Consensus 518 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 597 (1092)
+.+....+...++.|.+++.+|.+..++.++. ++.++.++...+.......-.. +.+.+.++.|+|++..+++|+
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~r-q~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMR-QKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeeccc-ccceEEEEEecCCccEEEecc
Confidence 99999999999999999999999999999875 5578888887776654332222 237899999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEeC-----CC-CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeee
Q 001363 598 DDHVIKIWDMNKVQLLTTIDA-----GG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1092)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 671 (1092)
.||.|++||..++..+..... .. ...-|.++.|-.+ ..+++|...|+|.+||...+..++.+..
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~--------- 243 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSC--------- 243 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhh---------
Confidence 999999999999988773321 11 1122455555543 4678888888888888887766665543
Q ss_pred ecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEE
Q 001363 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1092)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 751 (1092)
|...|.+++..+++.++++
T Consensus 244 -------------------------------------------------------------h~adVl~Lav~~~~d~vfs 262 (691)
T KOG2048|consen 244 -------------------------------------------------------------HDADVLALAVADNEDRVFS 262 (691)
T ss_pred -------------------------------------------------------------hhcceeEEEEcCCCCeEEE
Confidence 5556667777777777777
Q ss_pred eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001363 752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV 830 (1092)
Q Consensus 752 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~ 830 (1092)
++.|+.+..|....... -|-.. .....|...|.+++..++ .+++|+ |..+.+-..
T Consensus 263 aGvd~~ii~~~~~~~~~-------------~wv~~---------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNKS-------------EWVIN---------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred ccCCCceEEEEecCCcc-------------ceeee---------ccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 77777777666543311 02111 111248889999999888 555555 666666554
Q ss_pred CCceeeEEecCCCCCeEE-EEEcCCCCCEEEEEeCCCcEEEEEcCCce---------eeEeeccccCCeEEEEEcCCCCE
Q 001363 831 MTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNI 900 (1092)
Q Consensus 831 ~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg~v~iwd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~ 900 (1092)
...+...........-.+ +...| .++|..--.+..+.+|.+.+.. +.+-...-...|.+.+.||||++
T Consensus 319 ~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~ 396 (691)
T KOG2048|consen 319 REFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNL 396 (691)
T ss_pred cccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCE
Confidence 432211111100111112 22333 4566666667788899887651 11222223456999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-E-eCCcEEEEEcCCcee--eeeec-c
Q 001363 901 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTC--LKQWF-P 975 (1092)
Q Consensus 901 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~i~lwd~~~~~~--~~~~~-~ 975 (1092)
++.+.- ..++||.++.........+....... .....+.|+-|+..++. + ....+.+++..+... +.... .
T Consensus 397 Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~ 472 (691)
T KOG2048|consen 397 IAISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ 472 (691)
T ss_pred EEEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc
Confidence 997654 45889988764322222222211111 25778999999988777 4 556788887765432 22211 1
Q ss_pred CCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcE
Q 001363 976 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1055 (1092)
Q Consensus 976 ~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v 1055 (1092)
+--..|..+..|+||.||++.+.+|.|.+|++.+++...... .+ .....+++++|.+...++.+..+++|
T Consensus 473 ~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~---rl-------n~~vTa~~~~~~~~~~lvvats~nQv 542 (691)
T KOG2048|consen 473 AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV---RL-------NIDVTAAAFSPFVRNRLVVATSNNQV 542 (691)
T ss_pred cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh---cc-------CcceeeeeccccccCcEEEEecCCeE
Confidence 245789999999999999999999999999999997764332 01 12345778887777899999999999
Q ss_pred EEEecCCCC
Q 001363 1056 YVIEPNEPG 1064 (1092)
Q Consensus 1056 ~~w~~~~~~ 1064 (1092)
.-+|+...+
T Consensus 543 ~efdi~~~~ 551 (691)
T KOG2048|consen 543 FEFDIEARN 551 (691)
T ss_pred EEEecchhh
Confidence 999995443
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=297.11 Aligned_cols=264 Identities=14% Similarity=0.197 Sum_probs=230.2
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcC---------cCcccccccCCccccCCCCCceeeecCCCCCCCC
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT---------LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 803 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~ 803 (1092)
....+.|..|++|+..++.+-.|..|++|.+...+.. ......+.....+.|...+..... +. +|.+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L~--GH~G 452 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--LY--GHSG 452 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--ee--cCCC
Confidence 4556899999999999999999999999999854321 111112222344555554442332 32 5999
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001363 804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
+|....|+|+.++|++++ |+++|+|.+.+..++..+++|..+|..+.|+| -|.++|||+.|++.++|......+++.+
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence 999999999999999999 69999999999999999999999999999999 8999999999999999999999999999
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEE
Q 001363 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI 961 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~l 961 (1092)
.||.+.|.|+.|+|+..++|+||.|.+|++||+.+|. .++.+.||.. +|.+++|||+|++|++ +.|+.|.+
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEE
Confidence 9999999999999999999999999999999999976 5667788776 8999999999999999 58899999
Q ss_pred EEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001363 962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
||+.++..+.. +.+|.+.|.++.||.||..||+||.|++|++||+..-
T Consensus 604 WDl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999987 5689999999999999999999999999999998754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=283.46 Aligned_cols=287 Identities=25% Similarity=0.412 Sum_probs=254.8
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+++.+|.+.|++++|+|+++ ++++|+.||.|.+|++.+++.... +..|...+..+.|+|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD 62 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence 56789999999999999998 688899999999999998875543 5678899999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
+++|++++.++.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999999999999999875444 5678988999999999987 7888888999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
+.++++++. +.++++++.||.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||..+++.
T Consensus 138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence 999999764 578888888999999999988888888888889999999999999998875 56699999999998
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
+..+..+. ..+.++.|+|++.++++++.+|.+++|++.+++....+..+ ...+.+++|+|+++++++++.||.++
T Consensus 212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEE
Confidence 88887766 79999999999888888888999999999998888888744 34689999999999999999999999
Q ss_pred EEE
Q 001363 648 ILE 650 (1092)
Q Consensus 648 iw~ 650 (1092)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=270.21 Aligned_cols=276 Identities=21% Similarity=0.305 Sum_probs=234.6
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
..+.|.|+.+..+ .+++|..|++|+|||.++-.+++. +.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEEE
Confidence 4568999999643 479999999999999999888765 88999999999995 66999
Q ss_pred EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce---eEEEecCCcCeE
Q 001363 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVY 489 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~ 489 (1092)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. ++++++.|.+|.|||+..... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999888 67789999999999853 799999999999999987653 356789999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
.+.| +.+++++++.|.+|++|+..+.+.+.++.+|...|.|+.+ .|+++++|+. +.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9988 4579999999999999999999999999999999977764 5788888876 7789999999999999
Q ss_pred EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-------eCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.++||+ .-|.++.|. .+.+++|+.||+|++||+..+...... ..-.+...|..+.| |...+++++.
T Consensus 395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH 467 (499)
T KOG0281|consen 395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH 467 (499)
T ss_pred HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccC
Confidence 999999 899999995 578999999999999999876433111 11122334666666 4677899999
Q ss_pred CCeEEEEECCCCce
Q 001363 643 ENRIKILETPESNS 656 (1092)
Q Consensus 643 dg~i~iw~~~~~~~ 656 (1092)
|.+|.|||..++..
T Consensus 468 ddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 468 DDTILIWDFLNGPP 481 (499)
T ss_pred CCeEEEEEcCCCCc
Confidence 99999999987744
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=271.47 Aligned_cols=280 Identities=16% Similarity=0.218 Sum_probs=242.3
Q ss_pred CCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccce
Q 001363 623 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1092)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1092)
..|..+.|.|+|+.|++|+..|.+.+|+...- .
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f----------------------------------n------------- 129 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF----------------------------------N------------- 129 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCcee----------------------------------e-------------
Confidence 45889999999999999999999999986311 0
Q ss_pred eeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCcc
Q 001363 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782 (1092)
Q Consensus 703 s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 782 (1092)
+.+-...|.+.|.++.|+++|.+++++..+|.|++|+...+. ++.
T Consensus 130 -----------------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn------------Vk~ 174 (464)
T KOG0284|consen 130 -----------------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN------------VKI 174 (464)
T ss_pred -----------------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh------------hHH
Confidence 000112388999999999999999999999999999865431 111
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE
Q 001363 783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 861 (1092)
Q Consensus 783 ~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las 861 (1092)
. ...|...|++++|||+...+++++ ||+|+|||....+..+.+.+|.-.|.+++|+| ...+||+
T Consensus 175 ~--------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLias 239 (464)
T KOG0284|consen 175 I--------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIAS 239 (464)
T ss_pred h--------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEE
Confidence 1 012568999999999999999998 69999999999999899999999999999999 7889999
Q ss_pred EeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceE
Q 001363 862 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 862 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1092)
|+.|..|++||.++|.++.++.+|...|..+.|+|++++|+|+|.|..++++|+.+ .+-+....+|.. .+.+
T Consensus 240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~~~r~Hkk---dv~~ 311 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELFTYRGHKK---DVTS 311 (464)
T ss_pred ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHHHhhcchh---hhee
Confidence 99999999999999999999999999999999999999999999999999999995 235666777766 7999
Q ss_pred EEEccCCCEEEE--EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 942 IQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 942 l~~s~dg~~la~--~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
++|+|-..-|.+ |.||.|..|.+..-+.+..+..+|...|++++|.|=|..|++|+.|.++++|.-
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 999998766555 699999999998778888888899999999999999999999999999999964
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-30 Score=292.89 Aligned_cols=291 Identities=21% Similarity=0.304 Sum_probs=254.5
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC-
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA- 472 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~- 472 (1092)
.|...|.++.|+|||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3588999999999999999999999999999977662 12225679999999999999999 8999999999999999
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
..+..++++.+|...|++++|++ +++++++|+.|++|++||+++++....+..|...|.+++|+++|+++++++.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 56689999999999999999976 4589999999999999999999999999999999999999999999999965
Q ss_pred CceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCC-CCCceEE
Q 001363 553 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC 629 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~ 629 (1092)
++.|++||..++. +...+.++.... ++..+.|+|++.++++++.|+.+++||+..+........+... ..+.+..
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 7789999999999 567888877333 7999999999999999999999999999999999888877553 1334455
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCceeeecccc-cCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec--c
Q 001363 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A 706 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~ 706 (1092)
.++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++ +...++++++ .
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG 444 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence 5789999999999999999999999999999999 7777777776 5566677776 6
Q ss_pred ccccceeccc
Q 001363 707 ENKSEVEKPL 716 (1092)
Q Consensus 707 d~~i~lw~~~ 716 (1092)
|+.+++|..+
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 8889999754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-30 Score=266.20 Aligned_cols=697 Identities=15% Similarity=0.142 Sum_probs=371.5
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+-.|.+|.+.|+.+.|||-...|||+||.|..|+||.+..|-...- .-....+.+..-.|-++.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence 345678899999999999997777999999999999999985432210 0011224555668889999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC-CceeEEEec
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~~~~~ 483 (1092)
+|...-|...+..|+++|||+.+++.+. ++.+|...|.++.|+.||+ +|++++.|+.|+|||.+. ++.++..++
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9977666666788899999999986554 7889999999999999999 899999999999999874 678888888
Q ss_pred CCcCe-EEEeecccCCccEEEEEecC----CeEEEEEcCCCCc-eEEecCC-CCceEEEEEccCCCEEEEEecCCCCcee
Q 001363 484 HGAPV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 484 ~~~~v-~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~-~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
|.+.- ..+.| .++-..|++.+.+ ..|++||.+.... ..++... ...|.---|.||.++|+.++ .|+..
T Consensus 212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~ 286 (1012)
T KOG1445|consen 212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNK 286 (1012)
T ss_pred cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcce
Confidence 87642 12334 3454566666654 4589999876543 2233222 23566667899999998876 45778
Q ss_pred EEEEeCCCCeEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE-EEc--
Q 001363 557 LVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFN-- 631 (1092)
Q Consensus 557 i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s-- 631 (1092)
++.+.+...+..- .+...- .......++-|....-+..++ ..+++.+.+...+...- + .+. ... .|+
T Consensus 287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y-~--VPR-ksyrdFH~D 358 (1012)
T KOG1445|consen 287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPY-I--VPR-KSYRDFHSD 358 (1012)
T ss_pred EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeeccc-c--cch-hhhhhhhhh
Confidence 8888876554321 111100 011233334443222222221 12233333222221110 0 000 000 111
Q ss_pred --cCCCEEEEEeCCCeEEEEECCCCceeeec------ccccC----ceeee------eecCCCcc-ccccccCCceeecC
Q 001363 632 --KNGTLLAVIANENRIKILETPESNSVDAA------GVLSD----NLRKL------SVNPISTV-TGAGIANGSVSVNE 692 (1092)
Q Consensus 632 --~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~----~v~~~------~~~~~~~~-~~~~~~~~~~~~~~ 692 (1092)
|+..-...+..-| -|-..+++.++.+ +.|.. .+... +|.+.... ++.++....... +
T Consensus 359 LfPeT~G~~p~~~ag---eWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~-~ 434 (1012)
T KOG1445|consen 359 LFPETRGAEPGCTAG---EWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSS-S 434 (1012)
T ss_pred hCccccCCccCcCcc---ceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCcccccccc-c
Confidence 1110000000000 0111111111110 00100 00000 00000000 000000000000 0
Q ss_pred CCCCCCc-cceeeccccccceeccccccCcccccc----ccCCccccccEEEEE------EecCCcEEEEeecCCeeEEE
Q 001363 693 DPKEDVK-PEISVEAENKSEVEKPLFARPSECQSL----LLPSKVKANKISRLT------YNNGGQAIFALASNGVHLMW 761 (1092)
Q Consensus 693 ~~s~d~~-~l~s~~~d~~i~lw~~~~~~~~~~~~~----~~~~~~~~~~i~~l~------~s~~g~~l~~~~~dg~i~~w 761 (1092)
+.-||-. .-+.. ....+|-.+....+....... .-...+..+++..+. .-|...-+ ..+-....+.
T Consensus 435 ~~~Pd~~~qpaV~-~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~pl--t~~~s~~s~~ 511 (1012)
T KOG1445|consen 435 NNVPDVQEQPAVP-KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPL--TDSVSTPSVV 511 (1012)
T ss_pred cCCCccccCCCcC-cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCccc--cccccccccc
Confidence 0001100 00000 001111111000000000000 000000000000000 00000000 0000000000
Q ss_pred ------eecCCCcCcCccc---c----cc----------cCCccccCCCCCcee----eecCCCCCCCCCeeEEEEecCC
Q 001363 762 ------RWPRNDLTLSTEA---T----TK----------VPPRLYQPRHGPQFM----VNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 762 ------~~~~~~~~~~~~~---~----~~----------~~~~~~~~~~g~~~~----~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
..+......-|.. + .. ..+.-|.-..|.... ...+......-+-.|--|..+.
T Consensus 512 ~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~ 591 (1012)
T KOG1445|consen 512 GPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANN 591 (1012)
T ss_pred CccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeecc
Confidence 0000000000000 0 00 000001111111000 0000000011111222345566
Q ss_pred CEEEEE---eCCeEEEEEcCCc-eeeEE-ecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc-------eeeE
Q 001363 815 AYLFSA---SGGVISLYIVMTF-KTILT-IMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVIS 880 (1092)
Q Consensus 815 ~~l~~~---sdg~i~iwd~~~~-~~~~~-~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-------~~~~ 880 (1092)
+.+|+- +.|.|.||++... ++... +.+ ....|+.+.|.|.|...||++++||.|++|.+..+ .+-.
T Consensus 592 ~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~ 671 (1012)
T KOG1445|consen 592 KRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEK 671 (1012)
T ss_pred ceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcce
Confidence 677654 4689999999743 32211 111 34578999999999999999999999999999764 3457
Q ss_pred eeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCc
Q 001363 881 KLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 958 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~ 958 (1092)
.+.+|...|+++.|+|= ...|++++.|-+|++||+.+.. ....+.+|.. .|..++|||||+.+|+ +.||+
T Consensus 672 ~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 672 ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcceeeeecCce
Confidence 78899999999999994 5789999999999999999854 3344556665 8999999999999999 89999
Q ss_pred EEEEEcCCceeeeeeccC-CCCCEEEEEEecCCCEEEEEECCC----cEEEEEcCCCceEEeeccccccCCCCccccccc
Q 001363 959 LAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDG----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1033 (1092)
Q Consensus 959 i~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1033 (1092)
|++|+..+++....-..+ -..+-..+.|.-||+++++.+.|. .|.+||..+.....-........+. +
T Consensus 744 ~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-------~ 816 (1012)
T KOG1445|consen 744 LRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-------P 816 (1012)
T ss_pred EEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-------c
Confidence 999999877643221222 144556788999999999888774 4888988765532111100101110 0
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEecCCCCCccccCCCCC
Q 001363 1034 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus 1034 ~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
+-=.++++.+.+|++|-.|..|.+|++..+.|..-.+.|+.
T Consensus 817 LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~ 857 (1012)
T KOG1445|consen 817 LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFM 857 (1012)
T ss_pred ccccccCCCceEEEecCCCceEEEEEecCCCceeeeccccc
Confidence 11125565677899999999999999999998766655554
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=272.80 Aligned_cols=290 Identities=15% Similarity=0.192 Sum_probs=253.9
Q ss_pred eecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccC-CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001363 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|++.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 3789999999999999 899999999999999999987 65565 7889999999999999999 799999999999
Q ss_pred EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
+||+++|+++..|. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999986 55678899998875 57999999999999999999999999999999999999999999999998
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEeCCCCCCCC
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDAGGGLPEN 625 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~v 625 (1092)
. +..+++|+...+-.+....... .....++..+|+++++++-+.|+.|.++.+...- ....+.+|.....-
T Consensus 362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 6 5579999999887776655544 3567889999999999999999999999865432 22344444433445
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
..+.|||||.+|++|..||.+.+||..+.+.+..++.|...+..+.|.|. ....+++++
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~---------------------e~Skvat~~ 494 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV---------------------EPSKVATCG 494 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC---------------------CcceeEecc
Confidence 67999999999999999999999999999999999999999999999964 345689999
Q ss_pred cccccceec
Q 001363 706 AENKSEVEK 714 (1092)
Q Consensus 706 ~d~~i~lw~ 714 (1092)
.+|.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=238.64 Aligned_cols=270 Identities=20% Similarity=0.308 Sum_probs=239.8
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++ +..+|...|..++.+.|+. .+++|+.|+.+.+|
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVW 86 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEEE
Confidence 477899999999999999999999999999999999998777 7889999999999999998 69999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
|+++|+.++.|.+|.+.|+.+.|+ .+...+++|+.|..+++||-++.. +++.+......|.++..+ +..+++++
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred EcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 999999999999999999999995 456799999999999999988654 456666667778777764 56677777
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
. +++++.||++.|+...-+-+ .+|+++.|+++++..++++.|+++++.|-.+|+++....+|.....-..+
T Consensus 163 ~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 163 V----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred c----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 6 77799999999998777766 56999999999999999999999999999999999999988776656678
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCc-eeeeeecCCCcc
Q 001363 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTV 678 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~ 678 (1092)
+++....++++|++||.+++||+.+...+..++.+... +..+++.|....
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 88888999999999999999999999999998888877 788888865443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=245.35 Aligned_cols=291 Identities=16% Similarity=0.220 Sum_probs=255.3
Q ss_pred eecccCCCCceEEeec---CCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 328 QTLIEGSSSPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~s---pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+-.||+.+|..++|| |+| ++|++++.|+.-.+-+-++|.-+.+ +.||.+.|.+..+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 4558999999999998 577 6899999999999999999988876 7799999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEec
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~ 483 (1092)
..+..+-|+++.|-+-+|||.-+|..+. .+ .|...|.+++|+.|.+ +|++|+.++.++|+|++..+ +...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 9999999999999999999999998776 33 5889999999999999 79999999999999998764 4678899
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
|.+.|..+.|... .+.+++.+.|++||+||.+++.....+... .+|+++.+++||++|..+. .+.|..||..
T Consensus 142 htg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEeccc
Confidence 9999999998653 367888899999999999999988877654 4889999999999988775 3349999999
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
+-..++.+.... .|.+..++|+...+++|++|..++.||..+|..+.... .++..+|.|+.|+|+|...++|+.|
T Consensus 214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCC
Confidence 999988887644 78999999999999999999999999999999988852 2345679999999999999999999
Q ss_pred CeEEEEECCCCcee
Q 001363 644 NRIKILETPESNSV 657 (1092)
Q Consensus 644 g~i~iw~~~~~~~~ 657 (1092)
|+|++|....++..
T Consensus 289 GTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 289 GTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEEEEecCCCch
Confidence 99999998866443
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=259.55 Aligned_cols=277 Identities=16% Similarity=0.247 Sum_probs=234.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
....|.|+.+ |...+++|..|.+|+|||.++-.+++ .+.||++.|.|+.|. .+ .+++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3457889888 57789999999999999999987766 688999999999985 45 899999999999999999
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
|+++.++-+|...|..+.|+ ..++++++.|.++.+||+...... ..+.+|...|..+.|+ .+++++++.
T Consensus 267 ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC--
Confidence 99999999999999999983 359999999999999999877643 3567888888888875 458988875
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
+.+|++|+..+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD 409 (499)
T ss_pred --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence 7789999999999999999998 78887776 578999999999999999999999999987754 58899996
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCce---------eeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccce
Q 001363 632 KNGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1092)
.+.+++|..||+|++||+..+.. +..+..|.+.|..+.|. ...++
T Consensus 410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------------------~fqIv 463 (499)
T KOG0281|consen 410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------------------EFQII 463 (499)
T ss_pred --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec------------------------ceEEE
Confidence 67899999999999999987632 33444566677666664 66789
Q ss_pred eeccccccceeccccccCccc
Q 001363 703 SVEAENKSEVEKPLFARPSEC 723 (1092)
Q Consensus 703 s~~~d~~i~lw~~~~~~~~~~ 723 (1092)
+++.|.+|.+||+..+.+...
T Consensus 464 sssHddtILiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPSAA 484 (499)
T ss_pred eccCCCeEEEEEcCCCCcccc
Confidence 999999999999876555433
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-29 Score=304.22 Aligned_cols=294 Identities=14% Similarity=0.172 Sum_probs=238.4
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CC
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg 408 (1092)
+..|.+.|++++|+|+|+ ++|+|+.|++|+|||..+...... . .......+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence 456999999999999998 699999999999999864211000 0 000000122 356899999988 58
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
.+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999876544 6789999999999997 677 8999999999999999999999888754 57
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1092)
|.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. ++.|++||+..+
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence 88888853 467899999999999999998765 455677888899999997 7888988876 667999998743
Q ss_pred -----eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC-----------CCCCCCCceEE
Q 001363 566 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC 629 (1092)
Q Consensus 566 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~ 629 (1092)
..+..+.+|. ..+..++|+|++.++++|+.|+.|++|+......+..... ..+...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677888877 8899999999999999999999999999876654433221 12234589999
Q ss_pred EccCCCEEEEEeCCCeEEEEEC
Q 001363 630 FNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
|+|++..|++++.||.|+||++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=265.68 Aligned_cols=285 Identities=23% Similarity=0.342 Sum_probs=253.4
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|..+|.+++|+|++++|++++.++.|++|++.+++... .+..|...+..+.|+|+++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876433 5678999999999999998 799999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.+++.+..+..|...+.++.|.+. +.++++++.+|.+++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9999899999999999999999664 578888888999999999988888788888889999999999988888763
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.|++||..+++.+..+..+. ..+.++.|+|+++.+++++.++.+++||+.+++.+..+..+. ..+.+++|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence 5569999999999888888766 789999999999999999999999999999988888775443 368999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001363 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
|++.++++++.+|.+++|+..++.....+..+...+.++.++ ++++.+++++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR 286 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence 998888888889999999999988888888888889888886 6788899999999999
Q ss_pred eec
Q 001363 712 VEK 714 (1092)
Q Consensus 712 lw~ 714 (1092)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=248.06 Aligned_cols=290 Identities=17% Similarity=0.219 Sum_probs=239.8
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..+.+.+..|||||+++++++-||.|.+|++..++...+-+..+.. . ++ -+..+|.|+.||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------~--fM-------Mmd~aVlci~FSR 273 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------N--FM-------MMDDAVLCISFSR 273 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---------c--ee-------ecccceEEEeecc
Confidence 4567889999999999999999999999998876553333322211 1 11 1678999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeE
Q 001363 813 NDAYLFSAS-GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 890 (1092)
|...+|+|+ ||.|++|.+.+|.+++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|++++.++||++-|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999998 8999999999999999997 7999999999999 889999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC--EEEEEeCCcEEEEEcCCce
Q 001363 891 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVHETHLAIYEAEELT 968 (1092)
Q Consensus 891 ~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~--~la~~~d~~i~lwd~~~~~ 968 (1092)
...|++||.++++++.||+|++|+.++.++ +.++.... ...+|.++-.-|.+. ++++...++++|.++. |+
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC-----~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQ 425 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTEC-----LSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQ 425 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhh-----hhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ce
Confidence 999999999999999999999999999663 33332211 113578888877653 4444567889999985 77
Q ss_pred eeeeeccCC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEE
Q 001363 969 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus 969 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1046 (1092)
.++.+..|. .+.-.+.+.||.|.++...+.|+.++-+.+.+|++...+....-. ++.++-|| ..+.+
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd----------vIGl~HHP-HqNll 494 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD----------VIGLTHHP-HQNLL 494 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc----------ccccccCc-ccchh
Confidence 887766554 556667889999999999999999999999999999887733322 33477888 57899
Q ss_pred EEEeCCCcEEEEe
Q 001363 1047 AVGLTNGEVYVIE 1059 (1092)
Q Consensus 1047 ~~~~~dg~v~~w~ 1059 (1092)
|+=+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999995
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=256.80 Aligned_cols=297 Identities=16% Similarity=0.228 Sum_probs=258.6
Q ss_pred cCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
+.+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++.-.. ..|.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 6688899999999999999999999966 489999999999999987763221 1277888999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
+++.|.++++++++++.|+.+++|++...+... ++.||++.|+++.|..... .+++|+.|.+|+.||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999976555 7889999999999998776 59999999999999999999988
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
++- ....+..|+.. ...+++|-.|++|++||.++.........++ .|+++..+++|..+.+++. +.++.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 33445555553 3578999999999999999999888887766 9999999999999999976 667999
Q ss_pred EeCCCCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 560 WNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
.|.++.+....+...... ....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|.+++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 999999998887754321 1347889999999999999999999999999999999998777666799999999999999
Q ss_pred EEeCCCeEEEE
Q 001363 639 VIANENRIKIL 649 (1092)
Q Consensus 639 ~~~~dg~i~iw 649 (1092)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999998
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=254.25 Aligned_cols=287 Identities=19% Similarity=0.234 Sum_probs=243.4
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
..+.|. .|++++|||...+=+|+.+. -.+.||+..+...+++ +..-...|.++.|-.||
T Consensus 22 ~~ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 22 VHKEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDG 80 (487)
T ss_pred cccccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCC
Confidence 334554 99999999966544454433 6799999888776653 23355789999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
++||+|+..|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.+ .+++|++|+.+++||+.+......+.+|++.|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence 999999999999999977654455 57899999999999999887 89999999999999999999877999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-E
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-I 567 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~ 567 (1092)
.+.+++|. ++++++||+.||.|++||.+.......--.|+.+|..+.+-|.|..+++++. +.|++||+.+|. .
T Consensus 157 R~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 157 RCGDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQL 230 (487)
T ss_pred EeeccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCcee
Confidence 99999876 4579999999999999999998766666668899999999999999999874 459999999554 4
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
+..+..|. ..|+|+.+..++..|++|+-|+.|++||+.+.+.+..+...+ +|.+++.+|+++.+++|..||.+.
T Consensus 231 l~~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 231 LTSMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred hhhhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceee
Confidence 44444466 899999999999999999999999999999999999987764 489999999999999999999888
Q ss_pred EEECC
Q 001363 648 ILETP 652 (1092)
Q Consensus 648 iw~~~ 652 (1092)
+-+..
T Consensus 305 ~rr~~ 309 (487)
T KOG0310|consen 305 IRRRE 309 (487)
T ss_pred eehhh
Confidence 76433
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=233.96 Aligned_cols=316 Identities=17% Similarity=0.206 Sum_probs=244.3
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeE-EeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~-~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
......|..|+..+.+.+|||||. |+|+|+.|.+|+|.|++.--... ..++..=+.......+ ..+..|.++|+++
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvI--RTlYDH~devn~l 178 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVI--RTLYDHVDEVNDL 178 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceE--eehhhccCcccce
Confidence 344567889999999999999998 89999999999999997210000 0000000111111112 2377899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~- 481 (1092)
.|+|....|++|+.|++|+++|...-...+....+ ....+|.++.|+|.|. +|+.|....++++||+++-++...-
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC
Confidence 99999999999999999999999765443333222 3456899999999999 7899999999999999998886543
Q ss_pred --ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CC-CceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 482 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PG-LGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 482 --~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
..|.+.|+++.+++ .+.+.++++.||.|++||--+.+++.++.. |+ ..|.+..|..+|+++++.+. +..+
T Consensus 256 Pd~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~v 329 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTV 329 (430)
T ss_pred cccccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----ccee
Confidence 46899999999854 668999999999999999888888776543 33 47899999999999999875 7789
Q ss_pred EEEeCCCCeEEEEEeeccccCC--ceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 558 VEWNESEGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
++|.+.+++.+..+.|...... --+...|+....+++.-. ..+.++-||.+++..+..+.. ++...+..+.-||.+
T Consensus 330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVE 408 (430)
T ss_pred eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCC
Confidence 9999999999999987631111 123345777777777644 457799999999887766654 345678999999999
Q ss_pred CEEEEEeCCCeEEEEECC
Q 001363 635 TLLAVIANENRIKILETP 652 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~ 652 (1092)
.-+++++.|..+++|-..
T Consensus 409 p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 409 PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred Cceeeecccceeeeeeec
Confidence 999999999999999643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=292.65 Aligned_cols=322 Identities=14% Similarity=0.176 Sum_probs=247.5
Q ss_pred CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC----Ccc
Q 001363 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA 431 (1092)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~ 431 (1092)
+|-+++|+..+....... +..-+..|.+.|.+++|+|+|++||+|+.|+.|+||+..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 567888887765433211 11114569999999999999999999999999999998642 111
Q ss_pred c-ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCe
Q 001363 432 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 510 (1092)
Q Consensus 432 ~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~ 510 (1092)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 3467999999986433 7999999999999999999999999999999999999753 5579999999999
Q ss_pred EEEEEcCCCCceEEecCCCCceEEEEEc-cCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEEEEcC
Q 001363 511 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 511 i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
|++||+.+......+..+ ..+.++.|+ ++|.++++++. ++.|++||+.++. .+..+.+|. ..|.++.|.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV- 670 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence 999999988777766644 578899995 57899999876 6679999998765 456677776 889999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCC------ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 001363 589 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
++.++++++.|++|++||+..+ ..+..+..|. ..+..++|+|++.+|++|+.|+.+++|+............
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6789999999999999999743 4566666553 4578899999999999999999999999765432221110
Q ss_pred c-cCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEE
Q 001363 663 L-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 741 (1092)
Q Consensus 663 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 741 (1092)
. ...+ .. .....+...|.+++
T Consensus 749 ~~~~~~--------------------------------------------------------~~--~~~~~~~~~V~~v~ 770 (793)
T PLN00181 749 KTIDPV--------------------------------------------------------SG--LEVDDASQFISSVC 770 (793)
T ss_pred ccCCcc--------------------------------------------------------cc--cccCCCCcEEEEEE
Confidence 0 0000 00 00012556799999
Q ss_pred EecCCcEEEEeecCCeeEEEee
Q 001363 742 YNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 742 ~s~~g~~l~~~~~dg~i~~w~~ 763 (1092)
|++++..+++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999985
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=276.34 Aligned_cols=307 Identities=19% Similarity=0.250 Sum_probs=250.8
Q ss_pred cCCCCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
.+...|..++.+|||. .+|+|+ .|+.++||+.+.--. +.+.+|.. .+-....+..|.+.|+|+.|||||+
T Consensus 11 H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred cCCeeEEEEEecCCce-eEecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence 3356789999999998 589999 899999999764210 00111111 1111223678999999999999999
Q ss_pred EEEEEeCCCEEEEEEccC---C------------CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 410 LLGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~---~------------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
|||+|+.|+.|.||.... + +..+....+.+|.+.|..++|+|++. +|++++.|++|.|||..+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence 999999999999999883 1 11234557889999999999999999 899999999999999999
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC------CceEEEEEccCCCEEEEEe
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~i~~~~~s~dg~~l~~~~ 548 (1092)
.+.+..+.+|...|..+.|. |-|++|++-+.|++|++|+...-.....+..+- .-+..+.|||||.+|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~D--P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWD--PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEEC--CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 99999999999999999995 467999999999999999977655555544432 2478899999999999988
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-----CC------------EEEEEeCCCcEEEEECCCCc
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~s~dg~i~iwd~~~~~ 611 (1092)
.-+.+..++.|.+..+.+.-..+.||. .++.++.|+|. .+ .+++|+.|++|.||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 877778889999998888889999999 89999999983 11 46779999999999998887
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++.....-.. ..|..++|+|||..|++++.||+|.++.+...
T Consensus 316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 7765543222 46899999999999999999999999998754
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-28 Score=226.00 Aligned_cols=279 Identities=16% Similarity=0.240 Sum_probs=242.7
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
+.+++|...|.+|+|+.+|. -||+|+.|+++.+|+++..+.+... ...+|.+.|..++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCC
Confidence 66789999999999999998 5899999999999999988555432 2678999999999998
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
...++++++.|.+|++||...+++.... .. .+.=..+.|+|+|+ +++.++.|..|...|.++.+.+...+ ...
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i---~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~ 148 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARI---ET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF 148 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEe---ec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence 6789999999999999999999876633 22 23334578999999 79999999999999999888776654 455
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.++.++|+. ++.+++.....|+|.|..+...+++..+..|...+.++.|+|+|+++++|+. +..+.+||+..--
T Consensus 149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI 222 (313)
T ss_pred eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence 677788873 4457777778899999999999999999999999999999999999999987 6679999999999
Q ss_pred EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
+++.+..+. -+|..+.|+-+|++|++||+|..|-|=++++|..+..++..+. ...|+|+|...+||.+.+|
T Consensus 223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 999999888 8999999999999999999999999999999999999987654 6899999999999988775
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-29 Score=232.30 Aligned_cols=287 Identities=14% Similarity=0.180 Sum_probs=254.3
Q ss_pred eecCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 391 LVRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+..||+.+|..++||| +|-+|++++.|+.=.+-+-++|.-+. ++.||.+.|+....+.+.. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 3779999999999996 89999999999988887878886665 8899999999999998887 78999999999
Q ss_pred EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEE
Q 001363 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
+|||.-+|..+++|. |...|.+++| +.|..+|++|+.++.+|++|++..+. ...+.+|.+.|..+.|....+.+++
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence 999999999999996 8999999999 45678999999999999999987664 5578899999999999999999998
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
.+. ++.|++||.+++..++++... .+|.++.++++|.++.+ ...+.|.+||..+..+++....+.. |.
T Consensus 161 Sad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~n---V~ 228 (334)
T KOG0278|consen 161 SAD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCN---VE 228 (334)
T ss_pred ecc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccc---cc
Confidence 754 667999999999999998864 48999999999875544 4567899999999999998877644 78
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCCceeeec-ccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001363 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
+..++|+...+++|++|..++.||..++..+... ++|.++|-|+.|+ |||...++|+
T Consensus 229 SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGS 286 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGS 286 (334)
T ss_pred cccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccC
Confidence 8999999999999999999999999999998885 9999999999996 7899999999
Q ss_pred cccccceecccccc
Q 001363 706 AENKSEVEKPLFAR 719 (1092)
Q Consensus 706 ~d~~i~lw~~~~~~ 719 (1092)
.||+||+|.....+
T Consensus 287 EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 287 EDGTIRLWQTTPGK 300 (334)
T ss_pred CCceEEEEEecCCC
Confidence 99999999976443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=223.88 Aligned_cols=287 Identities=10% Similarity=0.094 Sum_probs=238.8
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
.|+||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||++.|.|+....+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence 4789999999999999999 899999999999999999999987 78999999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-----CCCcEEEEECC-------CCc
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS 476 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~-------~~~ 476 (1092)
+++++|+.|.++++||+++|+++.. + ....+|..+.|+++|. +++.+. ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 9999999999999999999987763 3 2456899999999999 344332 34679999988 455
Q ss_pred eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001363 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
+...+..+...++.+.|.+. +++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++. +.
T Consensus 139 p~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt 212 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT 212 (327)
T ss_pred ceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence 67888888899999999664 4799999999999999999976655 44678889999999999999999986 56
Q ss_pred eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE--EECCCC------------ceEEEEeCCCC
Q 001363 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI--WDMNKV------------QLLTTIDAGGG 621 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i--wd~~~~------------~~~~~~~~~~~ 621 (1092)
+-.+||..+-+.++++.... +|++.+++|....++.|+.....-+ =+.+.| +.+..+.. +
T Consensus 213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--H 286 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--H 286 (327)
T ss_pred cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--c
Confidence 68999999999999998754 9999999999888888764322211 122222 33344443 4
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
..+|++++|+|+|+..++|+.||.|++.....
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 56799999999999999999999999986553
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=224.13 Aligned_cols=287 Identities=16% Similarity=0.240 Sum_probs=237.9
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
+..-.+.|.++.|+++|. ++++++.|.+++|||..+|+.+++ +..+.-.|..+.|.....
T Consensus 10 f~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSN 69 (311)
T ss_pred cccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCc
Confidence 344466999999999998 577788899999999999998876 555777889999988888
Q ss_pred EEEEEeC--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 410 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 410 ~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
.++.++. |.+|+.-++.+.+.++ -+.||...|++++.+|-+. .+++++.|++|++||++..++...+.....+
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p 144 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP 144 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence 7777766 7899999999997776 7899999999999999998 8999999999999999999888877655555
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEec---CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+. +| ++.|-++|++...+.|++||++... +-.++. ......+.+.|||||++++.+.. .+.+++.|.
T Consensus 145 i~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDA 216 (311)
T KOG1446|consen 145 IA--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDA 216 (311)
T ss_pred ce--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEc
Confidence 54 45 5577888888888899999998753 223332 33557899999999999998865 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
-+|..+.++.++......-...+|+||++++++|+.||+|.+|++++|..+..+... ....+.++.|+|.-.++++++
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~- 294 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS- 294 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC-
Confidence 999999999998744444467889999999999999999999999999999999875 335688999999877777665
Q ss_pred CCeEEEEECC
Q 001363 643 ENRIKILETP 652 (1092)
Q Consensus 643 dg~i~iw~~~ 652 (1092)
..+.+|-..
T Consensus 295 -s~l~fw~p~ 303 (311)
T KOG1446|consen 295 -SNLVFWLPD 303 (311)
T ss_pred -ceEEEEecc
Confidence 467777544
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=222.50 Aligned_cols=286 Identities=13% Similarity=0.158 Sum_probs=240.1
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
.+.||+.+++.+.++.+|.+|.+++.|.+..+|--..|+.+. ++.||++.|+|++..-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999998887666 8899999999999999999 89999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-----CCeEEEEEcC-------CCCceEEecCCCCceEEEEEc
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS 538 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~s 538 (1092)
|+++|+++..++ ...+|..+.|++ +|.+++.... .+.|.++|++ ..++...+..+...++.+-|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 667899999966 4455555543 3569999988 445567778888899999999
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeE-EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 539 ANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
|-+++|++|.. ++.|.+||.++|.. +..-..|. ..|+.++++++..++++++.|.+-++||..+-+.++++.
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999986 56699999999854 44445555 799999999999999999999999999999999999987
Q ss_pred CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC--------------CCCceeeecccccCceeeeeecCCCccccccc
Q 001363 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET--------------PESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1092)
.. .+|++.+++|-..+++.|+.....-+=.. -..+.+...++|-++|++++++
T Consensus 230 te---~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---------- 296 (327)
T KOG0643|consen 230 TE---RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---------- 296 (327)
T ss_pred ec---ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence 65 35899999998888877765433222211 1224566778999999999997
Q ss_pred cCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|+|+..++|+.||.||+..++
T Consensus 297 ------------PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 ------------PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ------------CCCcccccCCCCceEEEEEec
Confidence 789999999999999986544
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=235.95 Aligned_cols=282 Identities=20% Similarity=0.365 Sum_probs=233.6
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC---
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG--- 408 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg--- 408 (1092)
-|.+.|.++... ++ .+.+|+.||.++|||.. |+.... +.||.++|.+++|--..
T Consensus 103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS 159 (423)
T ss_pred cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence 477899999998 45 58999999999999975 555543 78999999988886433
Q ss_pred CEEEEEeCCCEEEEEEccCCCccc-ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC--------------
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-------------- 473 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-------------- 473 (1092)
..+++++.|.++++|.++.++... ......||...|.+++..++|. .+++|+.|.+|.||+.+
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence 369999999999999998776532 2223459999999999999999 89999999999999932
Q ss_pred -----------CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC
Q 001363 474 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 474 -----------~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~ 542 (1092)
++.++-++.||.++|.++.|.+ ...+++++.|.+|+.||+.+++....+... ....++.++|..+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccc
Confidence 1224567889999999999965 358999999999999999999887776644 4788999999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCe---EEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc-eEEEEe
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ-LLTTID 617 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~-~~~~~~ 617 (1092)
+|++++. +..+++||++++. ....+.+|. +.|.++.|+|... +|++|+.|+++++||+++.+ ++..+.
T Consensus 314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999987 6679999999764 356778887 8999999999865 46779999999999999877 888888
Q ss_pred CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.|. ..|.++.|+. +.++++|+.|.+|+|+...
T Consensus 387 ~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 GHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 774 4588888875 7789999999999998654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-28 Score=264.96 Aligned_cols=310 Identities=15% Similarity=0.198 Sum_probs=224.6
Q ss_pred ceeeecc-cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~-~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...+.+. .|.+.||++.||+||+ |||+|+.||.|+||.+...+....... +.. |... . +.. .+.+..+.
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~---~~~-~~~~-~---~~~-~s~~~p~~ 326 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEG---DSS-CMYF-E---YNA-NSQIEPST 326 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhccccc---ccc-hhhh-h---hhh-ccccCccc
Confidence 4456667 9999999999999999 699999999999999977544221000 000 0000 0 000 00011111
Q ss_pred ECC---CCC--EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 404 WSP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 404 ~sp---dg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
-++ .++ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|++|++|++....|+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL 403 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL 403 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence 111 011 11112222222222211111123344788999999999999876 6999999999999999999999
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
..|. |...|+|++|+|.. .+++++|+-||.+|+|++...+...- .....-|++++|.|||++.+.|+. +|.++
T Consensus 404 ~~F~-HndfVTcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~----~G~C~ 476 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPVD-DRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTF----NGYCR 476 (712)
T ss_pred eEEe-cCCeeEEEEecccC-CCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEe----ccEEE
Confidence 9996 99999999999984 48999999999999999876554443 334468999999999999999987 66799
Q ss_pred EEeCCCCeEEEEEeeccc-----cCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 559 EWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
+|+....+......-+.. ....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 999988777665543321 12379999999754 358899999999999999999998888765555556789999
Q ss_pred CCCEEEEEeCCCeEEEEECCCC
Q 001363 633 NGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
||++++++++|..|++|+....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCC
Confidence 9999999999999999998654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-26 Score=209.95 Aligned_cols=308 Identities=18% Similarity=0.227 Sum_probs=237.7
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEE-eeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.++.+|... ..|.+|+|+|.|. |.|+|+..++++|-....-..++. .+-.. ......++ .-+.|.+.|.|.+
T Consensus 24 ~~i~~l~ds-qairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~---~pp~v~~k--r~khhkgsiyc~~ 96 (350)
T KOG0641|consen 24 EAINILEDS-QAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAK---QPPSVLCK--RNKHHKGSIYCTA 96 (350)
T ss_pred EEEEEecch-hheeeEEecCCCc-eEEeccCCceEEEEccccccCccccccccc---CCCeEEee--eccccCccEEEEE
Confidence 466677664 4999999999998 799999999998875432211110 00000 00001111 1456899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccC--CCcccceEEEcccccceeEEEEecC---CCcEEEEEEe-CCCcEEEEECCCCce
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSR 477 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~-~d~~i~vwd~~~~~~ 477 (1092)
|||+|++||+|+.|.+|++.-.+. ......-.++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 999999999999999999876653 3333344467789999999999754 222 566654 578889999999999
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEccCCCEEEEEecC
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.+.+.+|.+.|.++-- =++..+++|+.|.+|++||++-..++..+... ...|.+++..|.|++|+++..
T Consensus 176 ~~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 9999999999988742 15679999999999999999988777655332 246899999999999999876
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeCCCCCCCCc
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENP 626 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~ 626 (1092)
+....+||++.++.++.+..|. ..|.++.|+|...++++++.|..|++-|+... -.+.....| ...+.
T Consensus 252 ---dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i 323 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAI 323 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceE
Confidence 5568999999999999999988 89999999999999999999999999998642 122233333 34467
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 627 RICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.+.|+|..--+++.+.|.++.+|.+.
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecCccceeeeccCcceEEEeccC
Confidence 88999999899999999999999764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-28 Score=231.28 Aligned_cols=306 Identities=13% Similarity=0.196 Sum_probs=237.5
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
...+.+.+|++||.++|+|+.|.+|+|+|++..-.... +.+ +
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~---~~e-----------------------------------m 153 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK---PKE-----------------------------------M 153 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc---hhh-----------------------------------h
Confidence 45688999999999999999999999999873211000 000 0
Q ss_pred eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001363 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 781 (1092)
..+ ++.+..++....-.|...|+.+.|.|....|++++.|+++++||+....... ..+
T Consensus 154 ~~~--------------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------A~K 211 (430)
T KOG0640|consen 154 ISG--------------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------AFK 211 (430)
T ss_pred ccC--------------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--------HHH
Confidence 000 0011111111112388999999999999999999999999999987643200 011
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEe---cCCCCCeEEEEEcCCCCC
Q 001363 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNN 857 (1092)
Q Consensus 782 ~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~ 857 (1092)
++ ....+|.++.|+|.|.+|++|.| .++++||+++.++...- ..|.+.|+++.+|+ .++
T Consensus 212 ~~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~ 274 (430)
T KOG0640|consen 212 VF----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS 274 (430)
T ss_pred Hh----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence 11 15678999999999999999997 78999999999887654 35788999999999 899
Q ss_pred EEEEEeCCCcEEEEEcCCceeeEeec-cccC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001363 858 VIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~-~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
+.++|+.||.|+|||--+++|+.++. +|.+ .|.+..|..+|+++++.|.|..+++|.+.++.......=....+..
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq-- 352 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ-- 352 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch--
Confidence 99999999999999999999998885 4654 7899999999999999999999999999997633322111111211
Q ss_pred CCCceEEEEccCCCEEEEE--eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 936 APSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
.--+...|+....+++.- ..+.+.-||..++..+..+..+|.+.+..+.-||.+.-++||+.|..+|+|--
T Consensus 353 -~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 353 -KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred -hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 124567788888888874 44679999999999999989999999999999999999999999999999964
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-26 Score=257.16 Aligned_cols=289 Identities=12% Similarity=0.122 Sum_probs=224.0
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCCEE
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l 411 (1092)
|-..|.....++|+.. +++++.+..+..|+...|..+. +........-....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4457778888899763 5677777888899877664331 11111111112234789999999999999 89999
Q ss_pred EEEeCCCEEEEEEccCCCc----ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 412 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+++++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1234468899999999999998643 7999999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
|.+++|++ ++.+|++++.||+|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|.+||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999965 6789999999999999999998888777777654 45678999988888887665567889999998754
Q ss_pred -EEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 567 -IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 567 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
.......+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.-
T Consensus 249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk~ 315 (493)
T PTZ00421 249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPKW 315 (493)
T ss_pred CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEecccc
Confidence 333333222 24566678999999999887 59999999999998877665432 2356788888843
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-27 Score=261.58 Aligned_cols=284 Identities=17% Similarity=0.284 Sum_probs=248.5
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.|...+.|..|. ++ .+++|+.|++|++||..++..+.. -+.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 356689999999 44 489999999999999999987753 177999999999999889999
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
++|+.|.++++||..+|++.. .+.+|.+.|.++...+. .+++|+.|.+|++|++.++.+++.+.+|.++|+++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999998777 78899999999987653 68899999999999999999999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-eEEEE
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT 570 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 570 (1092)
..+ +.++++|+.||+|++||+.+.+....+.+|...|.++.+.+. ..+++++. +..|++||+.++ +++.+
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 873 579999999999999999999999999999999999987766 88999987 567999999999 99999
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
+.+|. ..+..+. ..++++++++.|++|++||..+++++..+..+ +...|..+++. ...+++++.||++++||
T Consensus 409 l~~h~---~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 409 LQGHT---SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hcCCc---ccccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99988 6665444 45689999999999999999999999999874 23446666655 57899999999999999
Q ss_pred CCCCceeeec
Q 001363 651 TPESNSVDAA 660 (1092)
Q Consensus 651 ~~~~~~~~~~ 660 (1092)
++++.....+
T Consensus 481 l~~~~~~~~l 490 (537)
T KOG0274|consen 481 LRSGTLIRTL 490 (537)
T ss_pred cccCchhhhh
Confidence 9998777655
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=241.57 Aligned_cols=309 Identities=18% Similarity=0.233 Sum_probs=242.5
Q ss_pred ccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCc
Q 001363 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~ 398 (1092)
+..+|..+-..|.+|+..|+++++.|.|.+ +++|+.|.+|++||...-..... .|+ .+.......
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~ 216 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQ 216 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCcccccc
Confidence 345677788889999999999999999996 89999999999999986543321 111 224446678
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCc---------ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
|.+++||+.|..|++.+.....+|+|-...+. +.-...-+||...++|.+|+|+.+. .++|++.||+++|
T Consensus 217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRI 295 (641)
T ss_pred cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEE
Confidence 99999999999999998888899999875433 2223345799999999999999887 7999999999999
Q ss_pred EECCCCce-eEEEe-----cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCC--ceEEEEEc
Q 001363 470 WDAVTGSR-TYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--GCTRMAYS 538 (1092)
Q Consensus 470 wd~~~~~~-~~~~~-----~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~--~i~~~~~s 538 (1092)
||+...+. ++.++ +..-++++++| ++|+.+|++|+.||.|.+|+........ .-..|.. .|++++||
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 99986543 33332 23446788888 5577899999999999999976543322 2334444 89999999
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEe------CCCcEEEEECCCCc
Q 001363 539 ANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQ 611 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s------~dg~i~iwd~~~~~ 611 (1092)
+||++|++-+. +..+++||++.. +++....+.. ...+-+.++|+|+.+.|++|+ ..|++.+||..+..
T Consensus 374 ~dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 374 YDGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999999876 667999999865 4444444433 234567789999999999975 45789999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.+..+... ...|..+.|+|.-+.+++++.||.+++|--.
T Consensus 449 ~v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 TVYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 99998866 3468899999999999999999999997544
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=260.64 Aligned_cols=305 Identities=17% Similarity=0.236 Sum_probs=237.5
Q ss_pred ccccEEEEEEecCCcEEEEee--cCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 733 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
+...|.++..+|+|..+++++ .||.+++|+.+.-.. ....++..-...+.+ . ..|.+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~--m--~~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCT--M--DDHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhee--e--ccccCceeEEEE
Confidence 445689999999999999999 899999998654211 111122211111111 1 149999999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEcCC------------------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001363 811 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 811 s~dg~~l~~~sd-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1092)
+|||++||+|+| +.|.||+... ++.+..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 999999999995 6789998762 346778999999999999999 89999999999999999
Q ss_pred EcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEE
Q 001363 872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 872 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 951 (1092)
+..+.+.+.++++|.+.|..+.|.|-|++|||-+.|++|+||++.+.... +.+..+..+.........+.|||||.+|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~--k~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE--KSITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee--EeeccchhhCCCcceeeecccCCCcCee
Confidence 99999999999999999999999999999999999999999997763322 2444444444434568899999999999
Q ss_pred EE--EeC---CcEEEEEcCCceeeeeeccCCCCCEEEEEEec--------CC-----C----EEEEEECCCcEEEEEcCC
Q 001363 952 LL--VHE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 952 a~--~~d---~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~t~~~Dg~i~vwd~~~ 1009 (1092)
++ +.+ ..+.|.+-.+.+.-.. +.||.+++.+++|+| +| . .+|+||.|++|.||....
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 98 322 3588888766655554 668999999999998 11 1 578999999999999876
Q ss_pred CceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001363 1010 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
.+.+..+. ...+. ..++++|+| ||..|.+.+.||+|.+..+.+.+.
T Consensus 314 ~RPl~vi~-------~lf~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 314 PRPLFVIH-------NLFNK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred CCchhhhh-------hhhcC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHh
Confidence 66653322 11122 235889999 689999999999999999977553
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=236.92 Aligned_cols=282 Identities=15% Similarity=0.211 Sum_probs=230.3
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..+.|.+++|+|...+=++.+..-.+.+|+...... ...+. .....+.++.|-.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~~s----rFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKTFS----RFKDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhhHH----hhccceeEEEeec
Confidence 457899999999777655666665677776433210 11000 1456789999999
Q ss_pred CCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEE
Q 001363 813 NDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 813 dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
||+++|+|++ |.|+|||+++...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|++.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999985 999999988777788999999999999999999999999999999999999999887789999999999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceee
Q 001363 892 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 970 (1092)
Q Consensus 892 l~~spd-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~ 970 (1092)
.+|+|- +.+++|||.||.|++||+.... .+......+ .+|..+.|-|.|.++|++..+.|++||+.+|...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999995 5689999999999999998743 122222222 2699999999999999999999999999966555
Q ss_pred eeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEe
Q 001363 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1050 (1092)
......|...|+|+++..|++.|+++|-|+.|++||+.+.+.+..+.. | ++| ++++.+| |+..+++|.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~-----~pv--Lsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----P-----GPV--LSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----c-----cce--eeEEecC-CCceEEEec
Confidence 444555999999999999999999999999999999999999987761 1 123 5677788 568999999
Q ss_pred CCCcEEEEec
Q 001363 1051 TNGEVYVIEP 1060 (1092)
Q Consensus 1051 ~dg~v~~w~~ 1060 (1092)
.||.+-+-+.
T Consensus 299 snGlv~~rr~ 308 (487)
T KOG0310|consen 299 SNGLVSIRRR 308 (487)
T ss_pred ccceeeeehh
Confidence 9999877643
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=245.56 Aligned_cols=279 Identities=18% Similarity=0.267 Sum_probs=240.7
Q ss_pred ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001363 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 416 (1092)
..-+.||..+ ++|+|.. ..|.+|+..++..... ..-++..|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 4457888655 5777653 6899999999986653 2224789999999999999999999
Q ss_pred CCEEEEEEccCCCcccceEEEcc-cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcCeEEEeec
Q 001363 417 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH 494 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~i~~~ 494 (1092)
+|.|.|||..+.+.++ .+.+ |...|.+++|+ +. .+.+|+.|+.|..+|+...+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877666 5667 99999999998 34 799999999999999998877655 88999999999995
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1092)
+|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|+. ..|++|++||..+|..+..+..
T Consensus 311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 4778999999999999999999999999999999999999999 5567777765 5588999999999999888765
Q ss_pred ccccCCceEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 574 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
. ..|..+.|++..+.+++ |..++.|.||+..+.+.+..+.+|. ..|..++++|||..+++|+.|.++++|++
T Consensus 387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 3 58999999999887877 5577899999999999999888774 46999999999999999999999999998
Q ss_pred CCC
Q 001363 652 PES 654 (1092)
Q Consensus 652 ~~~ 654 (1092)
-+.
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=227.02 Aligned_cols=280 Identities=16% Similarity=0.196 Sum_probs=234.2
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCC-cEEEEEEeCCCcEEEEEC
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~ 472 (1092)
-|.+.|.++... ++.|++|+.||.+++||..... ...+.||.++|.+++|.-... .-.+++++.|.++++|-+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~----~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS----IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCce----EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 388899999888 8899999999999999998742 336789999999888754322 115999999999999998
Q ss_pred CCCce----eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-------------------------CCCceE
Q 001363 473 VTGSR----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV 523 (1092)
Q Consensus 473 ~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-------------------------~~~~~~ 523 (1092)
+.++. ++...||...|.++.. .+++..+++|+.|.+|.+|+.. ...+..
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 87754 3444699999999987 4577899999999999999831 122445
Q ss_pred EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001363 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1092)
.+.+|..+|.++.|++ ...+++++. +.+|+.||+.++..+..+.+. ..+.++..+|..+.|++|+.|..++
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence 6788999999999988 667778876 788999999999999888874 4899999999999999999999999
Q ss_pred EEECCCCce---EEEEeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEEEECCCCc-eeeecccccCceeeeeecCCCcc
Q 001363 604 IWDMNKVQL---LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 604 iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
+||.+++.- ..++.+| ...|.++.|+| +..+|++++.|+++++||+++.. ++..+.+|.+.|.++.|+
T Consensus 326 l~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~----- 398 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN----- 398 (423)
T ss_pred ecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence 999987642 3444444 55899999999 55678999999999999999886 899999999999999997
Q ss_pred ccccccCCceeecCCCCCCCccceeeccccccceecc
Q 001363 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~ 715 (1092)
++.++++|+.|.+++++..
T Consensus 399 ------------------~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 399 ------------------EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ------------------CCceEEeccCcceEEEecc
Confidence 6788999999999999874
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-25 Score=214.09 Aligned_cols=273 Identities=16% Similarity=0.187 Sum_probs=229.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC--CCcEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 469 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~v 469 (1092)
+..-.+.|.++.|+++|.+|++++.|.+++|||..+|++++ ++..+...|..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 44467899999999999999999999999999999998776 5666777899999988887 4665655 889999
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
-++.+.+.++-|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....++ ++|.|.|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 9999999999999999999999997765 689999999999999999888877776665555 789999999998864
Q ss_pred CCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC-c
Q 001363 550 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P 626 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 626 (1092)
...|.+||+++- .+..++.-..........+.|+|||++++.++..+.+++.|.-+|..+.++..+.....+ .
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 337999999853 334444433222367899999999999999999999999999999999988876543322 4
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccc-ccCceeeeeecCCCc
Q 001363 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPIST 677 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 677 (1092)
..+|+||++++++|+.||+|.+|+++++..+..+++ +...+.++.|+|...
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA 288 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee
Confidence 788999999999999999999999999999999988 578888888876433
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-26 Score=217.08 Aligned_cols=276 Identities=18% Similarity=0.238 Sum_probs=220.0
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC-CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
..+.|.+++|||....+++.||.||+||+|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 36799999999966668889999999999999873 3332 1255699999999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+..|+||+.|++|+.||.+...++.++. ..+.++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998533 46789999999999887766689999999999999999999998886 55667777
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eE
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AI 567 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~ 567 (1092)
.. --.+++.+..++.|.+|+++....... ... -.-.+++++...|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 54 225899999999999999976554332 221 2336889999898888788876 455666666554 44
Q ss_pred EEEEeecccc------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001363 568 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 568 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
-.+|+.|... ...|++++|+|....|++++.||++.+||-.....+.+.+.+ ...|.+++|+.+|.++|-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence 5566777621 235788999999999999999999999998887777766544 34699999999999887664
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=251.00 Aligned_cols=277 Identities=14% Similarity=0.195 Sum_probs=212.1
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCc------C------------------cCc-ccccc---------
Q 001363 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EATTK--------- 777 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~------~------------------~~~-~~~~~--------- 777 (1092)
.|.+.|.++.||+||++|++++.||.|+||.+..... . ... .....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4899999999999999999999999999999876111 0 000 00000
Q ss_pred cCCccccCCCCCceeee-cCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC
Q 001363 778 VPPRLYQPRHGPQFMVN-DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 856 (1092)
Q Consensus 778 ~~~~~~~~~~g~~~~~~-~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~ 856 (1092)
..-.+....... +... -....+|...|..+.||.++-+|-+.-|.+|++|++...++++.|. |.+.|+|++|+|-|.
T Consensus 345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000011110000 0000 0012369999999999988754444449999999999999999998 999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001363 857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
+++++|+-||.|+||++...+++.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+......+....+.....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999987776655544 78999999999999999999999999999987766655555554443333
Q ss_pred CCceEEEEccCCC--EEEEEeCCcEEEEEcCCceeeeeeccCC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 937 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 937 ~~v~~l~~s~dg~--~la~~~d~~i~lwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
..|+.+.|.|... .|+++.|..|+|||..+...+..+...| ...-....|+.||++|++++.|..|++|++....
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4799999987654 7888999999999998888777754334 3445678899999999999999999999985443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-26 Score=217.99 Aligned_cols=313 Identities=13% Similarity=0.155 Sum_probs=235.3
Q ss_pred eeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCcccccc
Q 001363 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1092)
Q Consensus 657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 736 (1092)
+..+++|...|++++|+ .||+.+++++.|++|++|++..-....-+.+... ...+.
T Consensus 79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dh 134 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDH 134 (420)
T ss_pred hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCC
Confidence 34678999999999996 7899999999999999999764322222222111 12346
Q ss_pred EEEEEEecCCcEEEEeec-CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 737 ISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 737 i~~l~~s~~g~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.+.++|+||-+.++.... ...+++|.+..... |.... ...-||-.. ++ .-|...+..+-...+++
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~--------f~-~kh~v~~i~iGiA~~~k 200 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE--------FE-RKHQVDIINIGIAGNAK 200 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccccc--------cc-hhcccceEEEeecCCce
Confidence 788999999887766554 46899998765432 21110 111122000 10 12667778888889999
Q ss_pred EEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC---c-----eeeEeecccc
Q 001363 816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---S-----EVISKLEGHS 886 (1092)
Q Consensus 816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~ 886 (1092)
++++++ |..|.+|++. |+.+..+......-+..+.|| +|+++|+++.--.|++|.+-- | +.+..|+||.
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 999998 6789999998 888888887777778899999 999999999999999998732 2 2356789999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee--eeeeeecCCCC-cCCCCCceEEEEccCCCEEEEEeCCcEEEEE
Q 001363 887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLLVHETHLAIYE 963 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~~~~~~-~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd 963 (1092)
..|..++||++...++|+|.||+++|||.+-.... ..+.++..... ....+....++++|.|+.||++....+++|.
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 99999999999999999999999999998743211 11223222111 1111344589999999999999999999999
Q ss_pred cCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001363 964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
.++|+....+...|...|+++.|++||++++|+| |..+++..-..|
T Consensus 359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 9999988888888999999999999999999996 788998764333
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-25 Score=247.18 Aligned_cols=237 Identities=10% Similarity=0.095 Sum_probs=185.4
Q ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCc-c----cceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001363 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 7899999999999996 89999999999999999986432 1 123357799999999999999874 567999999
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE-----EEEccC
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN 540 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-----~~~s~d 540 (1092)
+|+|||+.+++.+..+. |...|.+++|++ +|.+|++++.|+.|++||++++.....+..|.+.+.. ..|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999888776 667899999965 6789999999999999999999888888888765432 345689
Q ss_pred CCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
+.++++++.++..++.|++||+++ ++.+..+..+. +.+.+......+++.++++|+.|++|++|++..+. +..+...
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence 999999887655557899999985 55555544332 12333334345568888899999999999998774 3444433
Q ss_pred CCCCCCceEEEccCC
Q 001363 620 GGLPENPRICFNKNG 634 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~ 634 (1092)
....++.+++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 344567889999864
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=221.00 Aligned_cols=297 Identities=14% Similarity=0.185 Sum_probs=243.9
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+.+.|.||++.||.++...... ++.+++.|.+.+||.+++|.++.. +.||.+.|++++|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF 198 (481)
T ss_pred eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence 45678899999999999988776 899999999999999999999986 7899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEcc------C--------CC----------------------c-ccceEEEcccccceeEE
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYH------G--------GS----------------------D-ARQQLEIDAHVGNVNDL 447 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~------~--------~~----------------------~-~~~~~~~~~h~~~v~~~ 447 (1092)
++.+.++++++.|++.+||... . ++ . ..+...+.+|.+.|.++
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9999999999999999999821 1 00 0 11244688999999999
Q ss_pred EEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEec
Q 001363 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYD 526 (1092)
Q Consensus 448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~ 526 (1092)
.|...|+ .+++++.|.+..+||+++|+.+..+.||....+.++-+| ..+++++.+.|.+.++||++..- ....+.
T Consensus 279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhhcceeeeec
Confidence 9999999 699999999999999999999999999999999998866 55799999999999999998543 345789
Q ss_pred CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1092)
+|...|+++.|..|.+ +++++. +.+|.+||+++.. .+.++... .+++.++.+..++.++.--.+..|++|
T Consensus 355 GHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd----S~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD----SPANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred ccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC----CccceeEeecCCceEEeccCCceEEEE
Confidence 9999999999988765 556654 7789999998754 45555543 588899999888888888888999999
Q ss_pred ECCCCceEEEE--eCCCCCCCCceEEEccCC--CEEEEEeCCCeEEEEECCCC
Q 001363 606 DMNKVQLLTTI--DAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPES 654 (1092)
Q Consensus 606 d~~~~~~~~~~--~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|+...++.... ...++...|.|++|..+. .-|++++.|..+.-|.+...
T Consensus 426 DlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 426 DLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99765433221 223444568899998643 35788889999999987653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=210.21 Aligned_cols=253 Identities=16% Similarity=0.246 Sum_probs=212.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|...|.+++|+.+|.+||+|+.|+++.+|+++..+.... ....+|.+.|..++|.|.... .+++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 567999999999999999999999999999999998754433 256789999999999998766 799999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.++++........+.++ ++| +++|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999998875555554 455 45778999999999999999987766554332 23566788887777766553
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
|.|+|.|.....-+.+..++.|. ....++.|+|+|+++++|+.|..+.+||++.--+...+.... -+|..+.||
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS 240 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD--WPVRTLSFS 240 (313)
T ss_pred -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc--CceEEEEec
Confidence 36789999988999999999988 888999999999999999999999999999888887776543 369999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceeee
Q 001363 632 KNGTLLAVIANENRIKILETPESNSVDA 659 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 659 (1092)
.||++||++++|..|-|=++++|..+..
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEE
Confidence 9999999999999999988887754443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-26 Score=230.12 Aligned_cols=293 Identities=14% Similarity=0.191 Sum_probs=235.6
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeee----cccccceeeEeeecCCCCcEEEE
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWD----IGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d----~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
.+.+..|.-.|.||+++||++ +..+++.+++|.=|++.+|+.... +|. ++....+++..- ++|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 366778888999999999999 589999999999999999985521 111 111223333322 4899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+.||||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|.+|++|+++....+.++.
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999988776 6889999999999987666 69999999999999999999999999
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+|...|.++.... -+..+.+|+.|+++++|++ ..+....+.++.+.+.+++|-.+. .+++|+. ++.|.+|++
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSL 355 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeee
Confidence 9999999987643 3345556669999999999 455666778888899999997654 5667765 677999999
Q ss_pred CCCeEEEEEeec-cccC--------CceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeCCCCCCCCceEE
Q 001363 563 SEGAIKRTYQGL-QLQH--------NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 563 ~~~~~~~~~~~~-~~~~--------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~ 629 (1092)
...+++.+.... .... ..|++++..|..+.+++|+.+|.|++|-+..+ .++..+... ..|++++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence 998887765432 1111 27899999999999999999999999999887 344444433 4589999
Q ss_pred EccCCCEEEEEe
Q 001363 630 FNKNGTLLAVIA 641 (1092)
Q Consensus 630 ~s~~~~~l~~~~ 641 (1092)
|+++|+.+++|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999776663
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=199.52 Aligned_cols=308 Identities=14% Similarity=0.135 Sum_probs=226.6
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
....|.+++|.|.|...++++...++++-.++.-.....+...+...+.+. -...+.|.+.|.|.+|||
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~-----------~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVL-----------CKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEE-----------eeeccccCccEEEEEecC
Confidence 567899999999999999999999999877654322112222111111111 011224899999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCcee-----eEEecCCCCCeEEEEEcCC---CCCEEEEEe-CCCcEEEEEcCCceeeEee
Q 001363 813 NDAYLFSAS-GGVISLYIVMTFKT-----ILTIMPPSPTATSLAFNPH---DNNVIAIGM-DDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l 882 (1092)
+|+++++|+ |.+|++..++...+ -..+.-|.+.|..++|-.+ .+.+|++++ .|..|++-|...|+....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999998 68888876653322 2346678999999999642 466788765 4668888899999999999
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEE
Q 001363 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAI 961 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~l 961 (1092)
.||++.|.++ ++-+|-++++|+.|.+|++||+.-.......- ....+.--.+..|.+++..|.|++|+++ .|....+
T Consensus 180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~-~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD-NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeecc-CcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 9999999886 34578999999999999999998644222110 1111111112479999999999999996 6788999
Q ss_pred EEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCC
Q 001363 962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1041 (1092)
Q Consensus 962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1041 (1092)
||+..+..++. +-.|+..|.++.|||...|+++++.|..|++=|+... +...+.....-. | .-..+.+.|+|+
T Consensus 258 ydirg~r~iq~-f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv~e---h--kdk~i~~rwh~~ 330 (350)
T KOG0641|consen 258 YDIRGGRMIQR-FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVVAE---H--KDKAIQCRWHPQ 330 (350)
T ss_pred EEeeCCceeee-eCCCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEEEe---c--cCceEEEEecCc
Confidence 99999999988 4479999999999999999999999999999999754 222222111111 1 123456889997
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 001363 1042 KPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1042 d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
| --|++.+.|.++.+|-++
T Consensus 331 d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 D-FSFISSSADKTATLWALN 349 (350)
T ss_pred c-ceeeeccCcceEEEeccC
Confidence 4 678899999999999874
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=213.01 Aligned_cols=285 Identities=17% Similarity=0.247 Sum_probs=226.5
Q ss_pred ceEEeecCC--CceEEEEEc-----CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC-C
Q 001363 337 PMSMDFHPV--QHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 408 (1092)
Q Consensus 337 V~~v~~spd--g~~llasg~-----~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd-g 408 (1092)
=.++.|||- ++..+|+++ ..|++.|-++..+..+.. +.-+| -.+.+..++||+. .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCc
Confidence 357889984 442333332 247899999875444432 11111 4578899999994 5
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
..+++++.||+++|||+... -.++..++.|...|.++.|++-.++ .+++++.|++|++|+...++.++++.||...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 67888999999999996533 2455578899999999999998776 67778999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEEEEecCCCCceeEEEEeCCCC-e
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESEG-A 566 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~-~ 566 (1092)
....|+|. ...++++++.||++++||++.......+..|...+.++.|+.-.. .+++++. ++.|+.||+++- .
T Consensus 151 y~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccc
Confidence 99999987 457999999999999999999888888999999999999998554 5556554 778999999864 4
Q ss_pred EEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCCCceEEEcc-CCCEEEEEeCC
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLLAVIANE 643 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~d 643 (1092)
.+..+.+|. -.|..+.|+|.. ..|++++.|-++||||...+ ..+.+...| ...+..+.|++ ++.++|..+.|
T Consensus 226 pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 226 PLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred cceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccc
Confidence 566777777 899999999975 56788999999999999854 344455444 34577888887 67899999999
Q ss_pred CeEEEEEC
Q 001363 644 NRIKILET 651 (1092)
Q Consensus 644 g~i~iw~~ 651 (1092)
+.++||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999984
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-26 Score=232.14 Aligned_cols=297 Identities=17% Similarity=0.236 Sum_probs=224.3
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001363 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s 811 (1092)
+|...|.++++.|.|.++++|+-|..+++||++.-..+ .+- +..-.+.....|.++.||
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~-----------fr~l~P~E~h~i~sl~ys 223 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------MRS-----------FRQLQPCETHQINSLQYS 223 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------chh-----------hhccCcccccccceeeec
Confidence 47888999999999999999999999999998753210 000 001111356688999999
Q ss_pred cCCCEEEEEeC-CeEEEEEcCCceeeE------------EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce-
Q 001363 812 KNDAYLFSASG-GVISLYIVMTFKTIL------------TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE- 877 (1092)
Q Consensus 812 ~dg~~l~~~sd-g~i~iwd~~~~~~~~------------~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~- 877 (1092)
+.|..+++.+. ...+|+|-...+... .-++|...++|.+|+|.....+++++.||+++|||+...+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 99988888874 779999976544332 2357888999999999888899999999999999998753
Q ss_pred eeEeec-----cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEE
Q 001363 878 VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1092)
Q Consensus 878 ~~~~l~-----~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 952 (1092)
.+..++ +..-+++.++|++||+++|.|..||.|.+|+..+..... .+.....|.. ...|++++||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence 233332 344578999999999999999999999999986533222 2222222321 23699999999999999
Q ss_pred E-EeCCcEEEEEcCCcee-eeeeccC--CCCCEEEEEEecCCCEEEEEEC------CCcEEEEEcCCCceEEeecccccc
Q 001363 953 L-VHETHLAIYEAEELTC-LKQWFPI--SSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYL 1022 (1092)
Q Consensus 953 ~-~~d~~i~lwd~~~~~~-~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~------Dg~i~vwd~~~~~~~~~~~~~~~~ 1022 (1092)
+ +.|+++++||+.+.+. +.. ..+ ...+-+.++||||.++|+||+. .|.+.+||..+...+.++...
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~-~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNV-RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--- 456 (641)
T ss_pred hccCCCceeeeeccccccchhh-hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---
Confidence 9 9999999999986553 333 222 2456678999999999999875 367999999999998887622
Q ss_pred CCCCccccccceEEEECCCCCCEEEEEeCCCcEEE-EecCCCC
Q 001363 1023 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV-IEPNEPG 1064 (1092)
Q Consensus 1023 ~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~-w~~~~~~ 1064 (1092)
......+.||| .-+++.+|+.||++++ ||...+.
T Consensus 457 -------~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 -------TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred -------CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 12345688999 4678999999999986 5655544
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=238.88 Aligned_cols=284 Identities=18% Similarity=0.296 Sum_probs=241.8
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEE-EE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~-l~ 403 (1092)
.+.+.|.||+..|..+++.+.. .++++|.||++++|+-..++.+.+. .+.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccce
Confidence 4568899999999999998887 4789999999999998777666432 25568888877 88
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+-+ |+-.|++|+.|.+|.+|...+...+. .+.+|...|.+++...++. ++|||.|.++++|- .+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence 886 66679999999999999999987766 7899999999999887775 99999999999995 567778899
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+|...|.+++..+.. .++||+.|++|++|. .++...++.+|..-|+.+++-+++.+ ++|+. ++.|+.|++
T Consensus 138 gH~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsN----Dg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSN----DGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecC----CceEEEEec
Confidence 999999999886543 899999999999994 46778889999999999999888664 46654 778999998
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
+|+.+..+.+|. .-++++....++..++++++|++++||+.. .+.+.+..++. .+.++.+-++|. +++|+.
T Consensus 208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence 899999999998 899999988888999999999999999976 77788776643 578888888886 778889
Q ss_pred CCeEEEEECCCC
Q 001363 643 ENRIKILETPES 654 (1092)
Q Consensus 643 dg~i~iw~~~~~ 654 (1092)
||.|+||.....
T Consensus 279 DG~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DGRVRVFTVDKD 290 (745)
T ss_pred CceEEEEEeccc
Confidence 999999987744
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=232.58 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=240.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998776 333446788889999999999999 789999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+...+...++.||.+.|+++.|.... ..+++|+.|.+|+.||+....+..+.. ....+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999986543 349999999999999999866655433 22334444444 455666665
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC--CCCCceEE
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 629 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 629 (1092)
+..|+.||.++..+......+ +.|+++..++++..+++++.|.++.+.|+.+.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 556999999999999888874 4899999999999999999999999999999998888865532 23478899
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCceeeecccccCc--eeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
|||++.|+++|+.||.|+||++.+++....+...... |++++|+ |.|..+++++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~ 452 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ 452 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence 9999999999999999999999999888877765554 9999997 567788899998
Q ss_pred cccceec
Q 001363 708 NKSEVEK 714 (1092)
Q Consensus 708 ~~i~lw~ 714 (1092)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9888884
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=241.79 Aligned_cols=353 Identities=18% Similarity=0.216 Sum_probs=262.9
Q ss_pred cCCCCce---EEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 332 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 332 ~h~~~V~---~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
.|...|. .+..++.+.++|.+|+.||.|++|++........ .+ ....+..|.+.|+.++...+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~ 85 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNG 85 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCC
Confidence 3444555 5556655545799999999999999875432210 00 011266799999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEE-ecCCCcEEEEEEeCCCcEEEEECCCC--ceeEE-----
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG--SRTYS----- 480 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~d~~~l~l~s~~~d~~i~vwd~~~~--~~~~~----- 480 (1092)
+.|+++|.|.+|++|+...+. -....+++.|...|.|+++ -++.. .++|||-|+.|.+||+.+| +.+.+
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 999999999999999998873 1222267889999999999 66666 8999999999999999988 33332
Q ss_pred ---Ee-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001363 481 ---FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 481 ---~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
+. |+..+|++++.++ +|..+++|+..+.+++||.++.+.+..+.+|...|..+..++||+++++++. +++
T Consensus 163 ~~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----Dgt 236 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGT 236 (735)
T ss_pred cccCCCCCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----Cce
Confidence 23 7888999998844 5679999999999999999999999999999999999999999999999986 778
Q ss_pred EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE
Q 001363 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1092)
|++||+...+++.++..|. ..|+++..+|+-..+++|+.||.|+.=|+.+......+-... .+|..+..+...+-
T Consensus 237 IrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNS 311 (735)
T ss_pred EEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCC
Confidence 9999999999999999988 779999999999999999999999999998853333322221 24677777765566
Q ss_pred EEEEeCCCeEEEEECCCCceeeecccc-------cCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccc
Q 001363 637 LAVIANENRIKILETPESNSVDAAGVL-------SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 709 (1092)
+-+++.|+.|+-|.....-.+...... ...+.+....|+...-+..+-... + .-.|.+.+++-...|.
T Consensus 312 ~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~-~----mL~dkRhVlTkDa~gn 386 (735)
T KOG0308|consen 312 VWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKH-A----MLNDKRHVLTKDAKGN 386 (735)
T ss_pred ceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhh-h----hhcCcceEeeecCCCC
Confidence 688889999999987643222111111 111111111111111110000001 1 1467889999999999
Q ss_pred cceeccc
Q 001363 710 SEVEKPL 716 (1092)
Q Consensus 710 i~lw~~~ 716 (1092)
+.+||+-
T Consensus 387 v~lwDIl 393 (735)
T KOG0308|consen 387 VALWDIL 393 (735)
T ss_pred EEEEEee
Confidence 9999965
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=230.49 Aligned_cols=567 Identities=12% Similarity=0.109 Sum_probs=351.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCc-EEEEEEeCCCcEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW 470 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-l~l~s~~~d~~i~vw 470 (1092)
+.|-...-..-.||+|+++++....+ .|.||...+|+++. .+.+|..++..+.+.|.... .++++++.||.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 44444444456799999999888655 59999999999887 78899999999999987663 478899999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeeccc-CCccEEE-EEecC------------CeEEEEEcCCCCceE--EecCCCCceEE
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAK-ENIHFIF-SISVD------------GKIKAWLYDSLGARV--DYDAPGLGCTR 534 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~l~-s~~~d------------g~i~vwd~~~~~~~~--~~~~~~~~i~~ 534 (1092)
|...+..++++..+.. +..+.+.+. -+...++ .+..| +.++-+.+.+..... ....+. .-.+
T Consensus 88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~ 165 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKS 165 (792)
T ss_pred cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCcc
Confidence 9999999988864432 322222110 0000111 11111 111111111110000 011111 1356
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cc
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQ 611 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~ 611 (1092)
+.+++.|.+...+. +..+.+|+..++.... ....+..|...+++.+++|+++++++|..||.|.+|.--. +.
T Consensus 166 I~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~ 240 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD 240 (792)
T ss_pred EEEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc
Confidence 78888888777665 3348888887755111 1111222335579999999999999999999999996433 22
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeec
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1092)
....-..|-|...|.+++|+++|.+|.+|+..+.+.+|.+.+++... +.
T Consensus 241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf-LP------------------------------ 289 (792)
T KOG1963|consen 241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF-LP------------------------------ 289 (792)
T ss_pred cccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc-cc------------------------------
Confidence 22222223334579999999999999999999999999998875211 11
Q ss_pred CCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcC
Q 001363 692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 771 (1092)
Q Consensus 692 ~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~ 771 (1092)
. -.+.|..+.+|||+...+....|..|.+-..+.-..
T Consensus 290 --------------------------------------R--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~--- 326 (792)
T KOG1963|consen 290 --------------------------------------R--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI--- 326 (792)
T ss_pred --------------------------------------c--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh---
Confidence 1 345688889999999888888898888876533211
Q ss_pred cccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEeCCeEEEEEcCCceeeEEec-----CCC--
Q 001363 772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIM-----PPS-- 843 (1092)
Q Consensus 772 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d-g~~l~~~sdg~i~iwd~~~~~~~~~~~-----~~~-- 843 (1092)
..++.-..+.+.. . ......-.+.++++|- +..+..+-.|.|.+||+.+.+.+..+. .+.
T Consensus 327 -----k~tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~ 394 (792)
T KOG1963|consen 327 -----KSTISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD 394 (792)
T ss_pred -----hhhccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCc
Confidence 0011111111000 0 0013444567888884 444444457999999998877665543 122
Q ss_pred ----CCeEEEEEcCCCCCEEEEEe--------CCC--cEEEEEcCCcee----eE-eeccccCCeEEEEEcCC-C-CEEE
Q 001363 844 ----PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEV----IS-KLEGHSKRVTGLVFSDA-L-NILV 902 (1092)
Q Consensus 844 ----~~i~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~----~~-~l~~h~~~V~~l~~spd-g-~~l~ 902 (1092)
-.+++++.+. .|.+++|+- .|| .+++|-...... .. ....|...+...+|.+. . ..++
T Consensus 395 ~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~v 473 (792)
T KOG1963|consen 395 VNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCV 473 (792)
T ss_pred ceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeE
Confidence 2468888888 699999864 333 567887654332 22 22458887777666542 2 3899
Q ss_pred EEeCCCcEEEEEcCCCceee-----eeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCC
Q 001363 903 SSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS 977 (1092)
Q Consensus 903 s~s~Dg~I~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h 977 (1092)
|+|.||.++||-+.+.+... ..+.....-+. ..+++++||.||..|+++.+++|.+||..+...+......-
T Consensus 474 ta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~ 550 (792)
T KOG1963|consen 474 TASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSR 550 (792)
T ss_pred EeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccc
Confidence 99999999999984432111 11222211122 36899999999999999999999999998843322222222
Q ss_pred CCCEEEEEEec----CCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCC------CccccccceE---EEECCCCCC
Q 001363 978 SVPISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT------TSCLHVYPHA---IAAHPLKPT 1044 (1092)
Q Consensus 978 ~~~v~~l~fs~----dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~---~~~~p~d~~ 1044 (1092)
..++..+.|.. ++. +.......+.+|++-+..+...+......... .....+-+.. +++.| .
T Consensus 551 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p---~ 625 (792)
T KOG1963|consen 551 NWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLP---E 625 (792)
T ss_pred ccchHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecc---c
Confidence 34444444433 333 23335678999999999888743322222220 0011122222 23333 2
Q ss_pred EEE--------EEeCCCcEEEEecCCCC
Q 001363 1045 QFA--------VGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1045 ~l~--------~~~~dg~v~~w~~~~~~ 1064 (1092)
.+. +.+.++.|.+|+...++
T Consensus 626 ~~~~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 626 LLLVVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred chhhhhhhhhhcccccceEEEecCCCch
Confidence 333 77788888888886655
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=244.25 Aligned_cols=270 Identities=17% Similarity=0.198 Sum_probs=211.0
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc----------cceEEEcccccceeEEEEec-CCCcEEEEEEeC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 463 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~ 463 (1092)
|-..|.....++|+..+++++.+.....|+...+..+ .....+.+|.+.|.+++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4456667777888777788777777777876544321 11224779999999999999 777 8999999
Q ss_pred CCcEEEEECCCC-------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001363 464 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1092)
Q Consensus 464 d~~i~vwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 536 (1092)
|++|++||+.++ +.+..+.+|...|.+++|+|.. +.+|++++.|++|++||+.+......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 35899999999999999999888888888999999999
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCc-
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 611 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~- 611 (1092)
|+|+|.+|++++. ++.|++||+++++.+..+.+|. ...+..+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999976 6779999999999998888876 23345678899888888754 47899999998754
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeeeccc-ccCceeeeeecC
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 674 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~ 674 (1092)
.+.....+. ...+....|+++++++++++ .|+.|++|++.++..+..... ....+..+++.|
T Consensus 250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 333333222 23455677899999999887 499999999998876654432 233455555554
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=210.12 Aligned_cols=241 Identities=19% Similarity=0.278 Sum_probs=205.2
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC--EEEEEeCCCcEEEEEcCC
Q 001363 799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~ 875 (1092)
..|...++++|+ ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ... .|++|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 359999999998 679999998 89999999999999999999999999999998 554 899999999999999999
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe
Q 001363 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
.+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-.|+......+.. ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999877443222222 234599999999999998
Q ss_pred CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceE
Q 001363 956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus 956 d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
.+.|-+|.+.+......... ..++.++.|- ++..|++|+.|+.|.+||.+++...+.+. .|...|..+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~ 256 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA 256 (362)
T ss_pred ccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheeeeE
Confidence 89999999988777665432 3567777775 56789999999999999999988887776 3566777665
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1036 ~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
.--.| ++.+|++++.||.|++||+...
T Consensus 257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 257 SYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecC-CceEEEEeccCceEEEEEcccc
Confidence 54555 5789999999999999999644
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=220.63 Aligned_cols=216 Identities=16% Similarity=0.184 Sum_probs=162.4
Q ss_pred eecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCccc---ceEEEcccccceeEEEEecCCCcEEEEEEeCCCc
Q 001363 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 466 (1092)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|.... .-..+.+..-.|.++.|+|.... +++ .+..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCce
Confidence 4889999999999999 77899999999999999998543221 11223344457899999998774 344 455889
Q ss_pred EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCC-ceEEEEEccCCCEE
Q 001363 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRRL 544 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~-~i~~~~~s~dg~~l 544 (1092)
++|||+.+++.+.++.+|...|.++.| +.||.+|++++.|+.|+|||.+.... +.....|++ .-..+.|..+-.+|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 999999999999999999999999999 66889999999999999999886543 445555554 33456777776678
Q ss_pred EEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCce
Q 001363 545 FSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~ 612 (1092)
++.+.+......|++||.+.. ..+.++.-.. ...+.---|.||.+.++.+ -.+.++..+.+...+.
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 887776666677999998753 3444444333 2345556788998877654 4677888888776543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=223.50 Aligned_cols=250 Identities=21% Similarity=0.280 Sum_probs=212.9
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceE--------------EE-cccccceeEEEEecCCCcE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--------------EI-DAHVGNVNDLAFSAPCKQI 456 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--------------~~-~~h~~~v~~~~~s~d~~~l 456 (1092)
...|.-+|.+++++||+++..+++.+++|.=|++.+|...+... .- ++|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 55699999999999999999999999999999999887431110 11 37888999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 536 (1092)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|.... ..+++++.|+.|++|+++....+.++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999996443 5799999999999999999988889999999999998
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1092)
...-++.+-+++. |.++++|++. .+....+.++. +.+.|++|-.+ .++++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEecc-ccceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 8888877777765 6779999994 33445666766 78999999765 68999999999999999999988766
Q ss_pred eCCCC----------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 617 DAGGG----------LPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 617 ~~~~~----------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
....+ ...|++++..|...++|+|+.+|.+++|...++
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 43211 125788999999999999999999999998876
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=247.96 Aligned_cols=279 Identities=17% Similarity=0.240 Sum_probs=242.2
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. .+++|+.|.+++|||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56788888888 67899999999999999999875552 3889999999999987555 799999999999999999
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
|++.+.+.+|...|.++.. ....+++|+.|.+|++|+++++..+..+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 9999999999999999976 34578899999999999999999999999999999999987 889999987 5
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCCCceEEEccC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
+.|.+||+.+++++..+.+|. ..|.++.+.+. +.+++|+.|++|++||+.++ +++.++..|... +.. ....
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~--l~~~ 422 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSS--LLLR 422 (537)
T ss_pred ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--ccc--cccc
Confidence 679999999999999999988 99999988776 89999999999999999999 899999877542 333 3345
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeccc-ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 634 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 634 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
+++|++++.|++|++||..++..+..+.+ +...+..+... ...+++++.++++++
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVKL 478 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeEE
Confidence 88999999999999999999999999988 55666655543 356788999999999
Q ss_pred eccccccCc
Q 001363 713 EKPLFARPS 721 (1092)
Q Consensus 713 w~~~~~~~~ 721 (1092)
||+......
T Consensus 479 ~dl~~~~~~ 487 (537)
T KOG0274|consen 479 WDLRSGTLI 487 (537)
T ss_pred EecccCchh
Confidence 998755443
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=225.92 Aligned_cols=293 Identities=11% Similarity=0.157 Sum_probs=233.4
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
++-+..|.||.+.|.|+|=+|..-..+|+|+.||.|+|||+.+.+++.+ +..|.+.|..++
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC 116 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence 4556778999999999999998844689999999999999999888765 667999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
+.. ..+++++.|.+|+.|.++.. .++ ++.+ ...+..+.-+..+. .++|||.+ |.|||.....++..+.-
T Consensus 117 v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smsw 185 (433)
T KOG0268|consen 117 VTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSW 185 (433)
T ss_pred ecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCce--eeecccccCCccceeec
Confidence 987 77888999999999998873 222 3333 23456666665566 68898865 99999999999999988
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
....|.++.|+|... .+|++++.|+.|.+||++...++...... -.-..++|+|.+-.++++.. +..++.+|++
T Consensus 186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR 259 (433)
T KOG0268|consen 186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMR 259 (433)
T ss_pred CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhh
Confidence 888999999988754 58889999999999999988876644322 13456899996655656543 7779999987
Q ss_pred CC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 564 EG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 564 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.- ..+..+.+|. ..|..+.|+|.|+-+++||.|.+|+||....+..-..... .....|.++.||.|.+++++|++
T Consensus 260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCC
Confidence 53 3455556655 8999999999999999999999999999987654332211 12245899999999999999999
Q ss_pred CCeEEEEECCCCce
Q 001363 643 ENRIKILETPESNS 656 (1092)
Q Consensus 643 dg~i~iw~~~~~~~ 656 (1092)
|+.|++|.....+.
T Consensus 336 d~nvRlWka~Asek 349 (433)
T KOG0268|consen 336 DGNVRLWKAKASEK 349 (433)
T ss_pred Ccceeeeecchhhh
Confidence 99999998775433
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=238.05 Aligned_cols=248 Identities=21% Similarity=0.253 Sum_probs=210.6
Q ss_pred CCCcEE---EEEEC-CCCCEEEEEeCCCEEEEEEccCCCcc---cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 395 PGVSVN---RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 395 h~~~V~---~l~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
|...|. ++..+ |.++||.+||.||.|++|++...... .....+..|...|+.++...+|+ .|+++|.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence 444444 44444 46788999999999999998754331 12346788999999999999998 79999999999
Q ss_pred EEEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eE--------Eec-CCCCceEE
Q 001363 468 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTR 534 (1092)
Q Consensus 468 ~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~--------~~~-~~~~~i~~ 534 (1092)
++|+...+ -++.++..|.+.|.++++. ..+...+++|+-|+.|.+||++++.. .. .+. ++..+|++
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 99999887 6788889999999999984 34567999999999999999997633 11 122 56678999
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1092)
++.++.|..+++|+. ++.+++||.++++.+..+.||. ..|..+..++||..++++|.||+|++||+...+++.
T Consensus 177 LA~N~t~t~ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred eecCCcceEEEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence 999999988888876 4559999999999999999999 999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++..|.. .|.++..+|+-.++.+|+.||.|..=|+.+.
T Consensus 250 T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 250 TYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9988755 4899999999999999999999998888764
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-24 Score=216.02 Aligned_cols=285 Identities=16% Similarity=0.185 Sum_probs=244.2
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
...+.++...|... .+.+|+.|.++.++|..+++.+.. ++||.-.|+.+.|+|+...+++
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheee
Confidence 34788888888744 689999999999999999988875 8899999999999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC--CcCeEEE
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH--GAPVYSL 491 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~i 491 (1092)
++.|..|+||......... ....|.++|+.+..+|.|. +|++++.|++..+.|+++|+.+...... .-.+++.
T Consensus 279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 9999999999998766443 5678999999999999999 8999999999999999999988766542 2347888
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
+|+| ||.+|.+|..||.+++||+..+.....+.+|.++|..++|+.+|-+|+++.. ++.|.+||++.-+...++
T Consensus 354 ~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 354 AFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred eEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhccccee
Confidence 8865 7789999999999999999999999999999999999999999999999986 555999999988888888
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
.... ...+.++.|.+.|.++++++.|=.|++++-.+.+.......+.+......+.|....+++++++.|..++++.+
T Consensus 428 ~l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 7766 45799999999999999998887777777555544433333333345789999999999999999999888754
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=207.78 Aligned_cols=274 Identities=16% Similarity=0.161 Sum_probs=215.2
Q ss_pred ecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 392 VRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 392 l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
-...++.|.+++||| ...+++++|.|++|++|+++....+.. .....|.++|.+++|+.||. .+++|+-|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 335778999999999 556667889999999999987322221 24557999999999999998 79999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
|+.+++ +..+..|.++|.++.|.+..+-..|++||.|++|++||.+...+...+..++ .+.++.. -..+++++..
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata- 174 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA- 174 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec-
Confidence 999994 5677789999999999877777799999999999999999888887776655 3333322 2334555544
Q ss_pred CCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCC------
Q 001363 551 KEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------ 621 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~------ 621 (1092)
+..|.+|+++++.... .....- ...+++++..++....+.|+-+|.+.|..+..+ +.-.++..|..
T Consensus 175 ---~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 175 ---ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred ---CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 4559999997664332 222221 356889999999888899999999999988876 33334444432
Q ss_pred -CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcc
Q 001363 622 -LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 622 -~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
.-.|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+..+..
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence 235788999999999999999999999999988888888999999999999855444
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-25 Score=204.75 Aligned_cols=200 Identities=18% Similarity=0.234 Sum_probs=165.4
Q ss_pred CCCCeeEEEEecC-CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001363 801 SQEAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 801 ~~~~v~~~~~s~d-g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
|..+|.++.+.+- ++.+++++ |++|++|+..-.+.++++.+|...|...+|+|...+++++++.|+++++||++....
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence 6666666666653 33444455 899999999999999999999999999999999999999999999999999987544
Q ss_pred eEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEE-E-Ee
Q 001363 879 ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-L-VH 955 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la-~-~~ 955 (1092)
...+..|...|.++.|+. +.+.|+|++.|+.|++||+..-+ .++..+.+|.- .|..+.|||...-|+ + +.
T Consensus 183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~---AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGL---AVRKVKFSPHHASLLASASY 255 (311)
T ss_pred eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCce---EEEEEecCcchhhHhhhccc
Confidence 444889999999999997 66889999999999999998743 23444566654 799999999876554 4 68
Q ss_pred CCcEEEEEcCCceeeeeeccCCCCCEEEEEEec-CCCEEEEEECCCcEEEEEc
Q 001363 956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 956 d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
|=+++|||...+.........|+.-|..+.||+ ++.++|+++.|+.++||+.
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 899999999866655555778999999999998 7789999999999999984
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=215.14 Aligned_cols=281 Identities=17% Similarity=0.238 Sum_probs=241.2
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
..+.++...|....+++|+.|.++.++|..+++.+. .++||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 467788888887899999999999999999987766 7899999999999999998 79999999999999998888
Q ss_pred eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEccCCCEEEEEecCCCCc
Q 001363 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
.......|..+|+.+..++ +|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 8888899999999999866 5579999999999999999998887665543 346899999999999988875 7
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
+.|.+||+.++..+..|.+|. ++|..++|+.+|-+++++++|+.|++||++.-+...++...... .+.++.|.+.|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence 789999999999999999988 99999999999999999999999999999999988888877654 68999999999
Q ss_pred CEEEEEeCCCeEEEEECCCC--ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 635 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
.+|+.++.+=.|++++-.+. +.+..+..|.+..+++.|. ...+++++++.|..+++
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL 502 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence 99999988766766664443 4555566666666666665 45677888888877766
Q ss_pred ec
Q 001363 713 EK 714 (1092)
Q Consensus 713 w~ 714 (1092)
+.
T Consensus 503 ~a 504 (506)
T KOG0289|consen 503 YA 504 (506)
T ss_pred ee
Confidence 54
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=231.42 Aligned_cols=275 Identities=20% Similarity=0.253 Sum_probs=237.9
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
.-+.|| ....||+|... .|++|+..++.... . ...+...|+++.|+++|. +|+.|..+|.|.|||..+.+.+.
T Consensus 181 nlldWs-s~n~laValg~-~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQ-SVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hHhhcc-cCCeEEEEecc-eEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhccccc
Confidence 347788 45577777544 59999999987433 2 223378999999999999 89999999999999999999999
Q ss_pred EEec-CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 480 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 480 ~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.+.+ |...|.+++|. +..+.+|+.||.|..+|++..+.... +..|...|..+.|++|++++++++. |+.+
T Consensus 254 ~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~ 325 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVV 325 (484)
T ss_pred cccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccce
Confidence 9998 99999999994 46899999999999999998877665 7889999999999999999999987 6779
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEE--eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
.|||....+.+..+..|. ..|.+++|+|-. ..|++| +.|+.|++||..++..+..+... ..|..+.|++..
T Consensus 326 ~Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 326 FIWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKY 399 (484)
T ss_pred EeccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCC
Confidence 999998889999999988 999999999975 456664 48999999999999999888654 458999999988
Q ss_pred CEEEEE--eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 635 TLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 635 ~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
+-++++ ..++.|.||+..+...+..+.+|...|..++++ |||..+++++.|.++++
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLRF 457 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEEe
Confidence 766664 457899999999999999999999999999996 78999999999999999
Q ss_pred ecccc
Q 001363 713 EKPLF 717 (1092)
Q Consensus 713 w~~~~ 717 (1092)
|++-.
T Consensus 458 w~~f~ 462 (484)
T KOG0305|consen 458 WNLFD 462 (484)
T ss_pred ccccC
Confidence 99653
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=202.99 Aligned_cols=272 Identities=20% Similarity=0.292 Sum_probs=215.6
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
++.|+.|.|+|.+.. |++++.||++++||+...+.... -.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 679999999999985 55567999999999988755532 23899999999997 567889
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
|+.||.|+.+|+.++... .+..|..+|.|+.+++-.. .+++||.|++|++||.........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998654 3678999999999998766 79999999999999988765555554 3347888865
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeEEE
Q 001363 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR 569 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~~ 569 (1092)
.+..|+.|+.|..+.+||+++......... -.-.++++++-|++.-.++++-+ |...+..+|.. ..+...
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie--GRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE--GRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec--ceEEEEccCCchHHhhhce
Confidence 556899999999999999998776653322 23478999999988877777762 23334444443 113344
Q ss_pred EEeecccc------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 570 TYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 570 ~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.|+.|... ..+|++++|+|-...+++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||+++.
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 56666522 247899999999999999999999999999999988887644 235899999999999999976
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-25 Score=217.67 Aligned_cols=284 Identities=14% Similarity=0.225 Sum_probs=233.5
Q ss_pred EEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEE
Q 001363 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1092)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd 515 (1092)
.+.||...|.|++=+|..-. .++||+.||.|++||+.+..++.+++.|.+.|..+++.. ..+++++.|++|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998622 699999999999999999999999999999999999854 5799999999999998
Q ss_pred cCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE-
Q 001363 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL- 594 (1092)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 594 (1092)
++.. ...++.+ ...+..+.-+..+..+++||. .|.|||.....++..+.-.. +.+.++.|+|....++
T Consensus 136 ~~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTILG-KSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeeec-cccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7763 3333322 234555666666777888865 39999999888888887665 7899999999876555
Q ss_pred EEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-ceeeecccccCceeeeeec
Q 001363 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673 (1092)
Q Consensus 595 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~ 673 (1092)
+++.|+.|.+||++.+.++..+...-. -+.++|+|++-.++++.+|..++.+|+... +++....+|...|.++.|+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 566999999999999999887765433 478999999889999999999999999865 6677888899999888886
Q ss_pred CCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEee
Q 001363 674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 753 (1092)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 753 (1092)
|-|+-+++|+.|.+||||....+......-.. .-..|.++.||-|.+++++|+
T Consensus 282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence 67888999999999999998755443333221 345688999999999999999
Q ss_pred cCCeeEEEeecC
Q 001363 754 SNGVHLMWRWPR 765 (1092)
Q Consensus 754 ~dg~i~~w~~~~ 765 (1092)
.|+.|++|.-..
T Consensus 335 dd~nvRlWka~A 346 (433)
T KOG0268|consen 335 DDGNVRLWKAKA 346 (433)
T ss_pred CCcceeeeecch
Confidence 999999998654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-21 Score=209.92 Aligned_cols=279 Identities=16% Similarity=0.218 Sum_probs=226.2
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC-eeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
..|+..-+.++|.|+|. ++.+++.||.|++|+..+.. .... +.-++..|.+++.. +.
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~~--s~ 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIACY--SN 67 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEeec--cc
Confidence 37888999999999999 78899999999999987652 2211 22266777777664 55
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeE
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
+|++|+.+++|.+|...+++.-. .+...+-++.+++|+.+|+ +++.||.|-.|++-+..+......+++|.++|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence 99999999999999999886543 2445667899999999999 899999999999999999999999999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--------CCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
++.|+| ++.+|++.+-||.|++||++++.....+..- ...+..++|+|+|..+++.+. ++.|.+|+
T Consensus 143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~ 216 (933)
T KOG1274|consen 143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYS 216 (933)
T ss_pred eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEc
Confidence 999965 6689999999999999999988776654332 235678999999766666654 66799999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
..+.+....+.....+ ..+..++|+|+|.||++++.||.|.|||.++-.. |.....|.+++|.|+.+.+-.-.
T Consensus 217 r~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred cCCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence 9999998888775522 3489999999999999999999999999998222 33345689999999988776665
Q ss_pred CCCeEEEE
Q 001363 642 NENRIKIL 649 (1092)
Q Consensus 642 ~dg~i~iw 649 (1092)
..|...+|
T Consensus 290 ~~g~~~~~ 297 (933)
T KOG1274|consen 290 ALGTLGVS 297 (933)
T ss_pred eccccccC
Confidence 55555554
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=201.53 Aligned_cols=243 Identities=17% Similarity=0.246 Sum_probs=203.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|.++|+++|.+ |.|+|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|+
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 67899999999996 8999999999999999999886665 566799999999999987433599999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
...-.++.++++|.+.|+.++++|+ +++-++.+.|+.++.|++-.++.-....... ..+.+.|+|.|.+++..+.
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~-- 188 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGR-- 188 (362)
T ss_pred cCCeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEec--
Confidence 9999999999999999999999875 4789999999999999998887766554433 2344899999998888764
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE-
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF- 630 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~- 630 (1092)
..|-+|.+.+......+... ..+.++.|. ++..+++|++|+.|.+||..+..+...+..|. ..|..+.+
T Consensus 189 ---~~i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~ 258 (362)
T KOG0294|consen 189 ---NKIDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASY 258 (362)
T ss_pred ---cEEEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch--hheeeeEEE
Confidence 45889988877666555442 246666665 46789999999999999999988888888664 46888774
Q ss_pred -ccCCCEEEEEeCCCeEEEEECCCC
Q 001363 631 -NKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 631 -s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.|++.+|++++.||.|++||+...
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999999865
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-24 Score=204.98 Aligned_cols=323 Identities=11% Similarity=0.150 Sum_probs=238.5
Q ss_pred CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCc
Q 001363 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 699 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 699 (1092)
++...|..++.......+.+++.|.+.+||.++++.++....+|.+.|.+++|+ +.+.
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh----------------------~s~~ 203 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH----------------------NSGL 203 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec----------------------cccc
Confidence 344568888888777889999999999999999999999999999999888887 4567
Q ss_pred cceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccC
Q 001363 700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 779 (1092)
Q Consensus 700 ~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 779 (1092)
++++++.|++-.||....+ ...|.......+ +.... + -. .|....- .++..
T Consensus 204 L~lTaSGD~taHIW~~av~-------~~vP~~~a~~~h-----SsEeE-~-e~-sDe~~~d---------~d~~~----- 254 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVN-------WEVPSNNAPSDH-----SSEEE-E-EH-SDEHNRD---------TDSSE----- 254 (481)
T ss_pred eEEEccCCcchHHHHHhhc-------CcCCCCCCCCCC-----Cchhh-h-hc-ccccccc---------ccccc-----
Confidence 7788888888888875421 111110000000 00000 0 00 0000000 00000
Q ss_pred CccccCCCCCcee--eecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC
Q 001363 780 PRLYQPRHGPQFM--VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 856 (1092)
Q Consensus 780 ~~~~~~~~g~~~~--~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~ 856 (1092)
...|..+. ...++ +|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|..+.+.++-+| ..
T Consensus 255 -----~sD~~tiRvPl~~lt--gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQ 326 (481)
T KOG0300|consen 255 -----KSDGHTIRVPLMRLT--GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQ 326 (481)
T ss_pred -----ccCCceeeeeeeeee--ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cc
Confidence 01111111 12233 5999999999999999999999 89999999999999999999999999999999 89
Q ss_pred CEEEEEeCCCcEEEEEcCCc-eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001363 857 NVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
+++++.+.|.+.++||+... ..+..|.||++.|+++.|.-| ..+++++.|.+|+|||+..-. .++.+....
T Consensus 327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR----splATIRtd--- 398 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR----SPLATIRTD--- 398 (481)
T ss_pred eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeecccc----CcceeeecC---
Confidence 99999999999999999853 457889999999999999866 578899999999999998732 123333222
Q ss_pred CCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceeee---eeccCCCCCEEEEEEecCC--CEEEEEECCCcEEEEEcCC
Q 001363 936 APSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLK---QWFPISSVPISQATFSCDC--RMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~---~~~~~h~~~v~~l~fs~dg--~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
.++..++.+..+..||.- .+..|++||+......+ .-..+|..-|+|++|+.+- .-|+++|.|..+.=|++..
T Consensus 399 -S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 399 -SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred -CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 358899999999999995 55679999997544332 2246799999999998764 4589999999999999875
Q ss_pred C
Q 001363 1010 L 1010 (1092)
Q Consensus 1010 ~ 1010 (1092)
.
T Consensus 478 p 478 (481)
T KOG0300|consen 478 P 478 (481)
T ss_pred c
Confidence 4
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=202.51 Aligned_cols=252 Identities=20% Similarity=0.334 Sum_probs=209.6
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec--CCCcEEEEEEeCCCcEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIK 468 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~ 468 (1092)
+.+.|++.|..+...--|++||+++.|++|+|+.+..+.....+.+|.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 3667999999999888999999999999999999998877677789999999999999977 677 899999999999
Q ss_pred EEECCCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEccC---
Q 001363 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN--- 540 (1092)
Q Consensus 469 vwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~d--- 540 (1092)
||.-++|+ ..+....|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99988774 34566789999999999999999999999999999999988762 23345667788999999986
Q ss_pred C-----------CEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCC----CEEEEEeCCCcEE
Q 001363 541 G-----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIK 603 (1092)
Q Consensus 541 g-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~i~ 603 (1092)
| +.|++++. ++.|.+|+..+++ ..+++.+|. +.|+.++|.|.- .++++++.||++.
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 5 56888876 6779999988763 344577877 999999999974 5789999999999
Q ss_pred EEECCCC--ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 604 IWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 604 iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
||..... ....++. +.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 237 Iwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9976632 1122221 1123458899999999999999999999999755
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=229.27 Aligned_cols=248 Identities=12% Similarity=0.172 Sum_probs=189.9
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC-CCcEEEEEEeCCCcEEEEECCCCc--------eeEEEecC
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 484 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~ 484 (1092)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5667889999987653 34478899999999999997 56 89999999999999998642 34567899
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
...|.+++|+|.. ..++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999998753 2356899999999999999888766665 4568999999999999998875 56799999999
Q ss_pred CeEEEEEeeccccCCce-----EEEEEcCCCCEEEEEeCCC----cEEEEECCC-CceEEEEeCCCCCCCCceEEEccCC
Q 001363 565 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
++.+..+.+|. +.+ ....|++++.++++++.|+ .|++||+++ ++++..+..+.....+......++|
T Consensus 199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 99999999887 433 2334568999999988764 799999985 6666666555443323333334568
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecc-cccCceeeeeecCC
Q 001363 635 TLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI 675 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~ 675 (1092)
.++++|+.|+.|++|++..+.....-. .+..++.++++.|.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 899999999999999998763222111 23445566666654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=200.61 Aligned_cols=298 Identities=13% Similarity=0.163 Sum_probs=217.1
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
.+.+|+||+++|++++||.||+ .||+++.|++|+||++..-.....+.++ ..-.-+..+.++|+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R---------------~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIR---------------QNVEYDHPTRVVFA 141 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhh---------------ccccCCCceEEEEC
Confidence 4578899999999999999999 5899999999999999864322211111 11122357789999
Q ss_pred CCCCEEEEEeC-CCEEEEEEccCCCc---ccce------EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 406 PDGSLLGVAYS-KHIVQLYAYHGGSD---ARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 406 pdg~~las~~~-d~~i~iwd~~~~~~---~~~~------~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
||-+-+++... ..++++|.+...+. .... .--+.|.-.|..+-...+++ ++.+++.|..|.+|++. |
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k--~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK--YIMSASLDTKICLWDLK-G 218 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce--EEEEecCCCcEEEEecC-C
Confidence 99887766544 45799998754322 1110 01124666777788777788 89999999999999988 9
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC--------CCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--------SLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~--------~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
+.+..+......-+..+. +|+|+++++++.--.|++|..- .-.....+.+|...|..++|+++.+++++.
T Consensus 219 q~L~~idtnq~~n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred ceeeeeccccccccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 999888765555555566 5688999999999999999753 222455788999999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCC-------eEEEEE--eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 548 GTSKEGESFLVEWNESEG-------AIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~-------~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
+. ++.+++||..-. +.++.. .-+.. ......+.++|+++.|+... ...+.++..++|+....++.
T Consensus 297 Sk----DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 297 SK----DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELED 370 (420)
T ss_pred ec----CCcEEEeeccceEecCCCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHH
Confidence 86 667999997522 222222 11111 23344899999998776644 46799999999888776653
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 619 GGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
- +...|.+++|+++|++++++++ ..++++...
T Consensus 371 ~-h~~~Is~is~~~~g~~~atcGd-r~vrv~~nt 402 (420)
T KOG2096|consen 371 I-HSTTISSISYSSDGKYIATCGD-RYVRVIRNT 402 (420)
T ss_pred h-hcCceeeEEecCCCcEEeeecc-eeeeeecCC
Confidence 2 2245899999999999999875 677776533
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=223.71 Aligned_cols=275 Identities=15% Similarity=0.211 Sum_probs=221.8
Q ss_pred ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeE-EE
Q 001363 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FA 809 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~-~~ 809 (1092)
.+|...|..+++.+.. .+++++.||++++|+-..... +-.. ...++.+-|.+ ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~~--~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LETH--AFEGPKGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccce--ecccCcceeeccce
Confidence 4588889888877665 588999999999997432211 1001 11135555555 67
Q ss_pred Eec-CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC
Q 001363 810 LSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 887 (1092)
Q Consensus 810 ~s~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 887 (1092)
+.+ ++-.+++|+ |.++.+|......++..+.+|...|.+++... ++. +++|+.|.++++|.. +++...+.+|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 664 444466666 89999999999999999999999999999887 665 999999999999976 566777999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCc
Q 001363 888 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 967 (1092)
Q Consensus 888 ~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~ 967 (1092)
.|+++++-|++ .++|||.|++|++|.-.+ .++++.+|.. .|+.+++-+++.+|-++.||.|++|++ +|
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence 99999999998 899999999999998755 7888899887 899999999999999999999999999 78
Q ss_pred eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEE
Q 001363 968 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1047 (1092)
Q Consensus 968 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1047 (1092)
+++.. ..+|+.-|.++....++..++++|+|+++++|+.. ++.+.+. +|.. .+++ +.+-+ +.-++
T Consensus 210 e~l~~-~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPtt----siWs--a~~L~--NgDIv 274 (745)
T KOG0301|consen 210 EVLLE-MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPTT----SIWS--AKVLL--NGDIV 274 (745)
T ss_pred ceeee-eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCcc----ceEE--EEEee--CCCEE
Confidence 88887 66899999999998999999999999999999987 5555554 2322 3443 33332 45699
Q ss_pred EEeCCCcEEEEecC
Q 001363 1048 VGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1048 ~~~~dg~v~~w~~~ 1061 (1092)
+|+.||.||||-..
T Consensus 275 vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVD 288 (745)
T ss_pred EeccCceEEEEEec
Confidence 99999999999875
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-21 Score=212.31 Aligned_cols=516 Identities=15% Similarity=0.180 Sum_probs=327.0
Q ss_pred EcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCc-cEEEEEecCCeEEEEE
Q 001363 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWL 515 (1092)
Q Consensus 437 ~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd 515 (1092)
+.|-...-....||+|+++ ++.+. +..|.||...||.++..+.+|..++.++.+.+.... .++++++.||.|++||
T Consensus 12 lgg~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred eccccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence 3344444445689999994 44333 568999999999999999999999999999887664 6788999999999999
Q ss_pred cCCCCceEEecCCCCceEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCCCeEE-----EEEeecc----ccCCceEE
Q 001363 516 YDSLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIK-----RTYQGLQ----LQHNSVSV 583 (1092)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~~~~~-----~~~~~~~----~~~~~v~~ 583 (1092)
+.......++.... ++..+.+.| +-...+..+.. ....+........... .++..+. .....-..
T Consensus 89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~--~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~ 165 (792)
T KOG1963|consen 89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVE--DYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS 165 (792)
T ss_pred CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecc--cceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence 99888777665543 233333322 11112211110 0111111111111111 1111111 00011355
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-e-CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001363 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-D-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 584 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
+.+++.+.+....- +..+.+|...++...... . .-.+...+++.+++|+++++|++..||.|.+|.--.. .
T Consensus 166 I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~ 238 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------S 238 (792)
T ss_pred EEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------c
Confidence 67777776665554 455888888775511111 0 1112233789999999999999999999999974421 0
Q ss_pred cccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEE
Q 001363 662 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 741 (1092)
Q Consensus 662 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 741 (1092)
. .+-+.++|.- |...|.+++
T Consensus 239 ~-------------------------------------------~~~t~t~lHW-----------------H~~~V~~L~ 258 (792)
T KOG1963|consen 239 D-------------------------------------------DSETCTLLHW-----------------HHDEVNSLS 258 (792)
T ss_pred c-------------------------------------------ccccceEEEe-----------------cccccceeE
Confidence 0 0011111110 667899999
Q ss_pred EecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe
Q 001363 742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 821 (1092)
Q Consensus 742 ~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s 821 (1092)
|+++|.+|++|+..|.+.+|.+..++. .. ++ .-..+|..+.+|||+.+.+...
T Consensus 259 fS~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 259 FSSDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred EecCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEe
Confidence 999999999999999999998765421 11 11 2577899999999999887775
Q ss_pred -CCeEEEEEcCCceeeEEecCC-----------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec------
Q 001363 822 -GGVISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------ 883 (1092)
Q Consensus 822 -dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------ 883 (1092)
|+.|.+....+.....++.+. .+-.+.++++| ..+.++..+..|.|.+||+.+.+.+..+.
T Consensus 312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~ 390 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY 390 (792)
T ss_pred cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence 899999887666554444332 23457889999 67788888999999999998876554442
Q ss_pred -----cccCCeEEEEEcCCCCEEEEEe--------CCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC
Q 001363 884 -----GHSKRVTGLVFSDALNILVSSG--------GDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 884 -----~h~~~V~~l~~spdg~~l~s~s--------~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
.+.-.+++++.+-.|.+++|.- .|| .+++|-...........-.....|.. ..+..+.+++..
T Consensus 391 ~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~r 468 (792)
T KOG1963|consen 391 SDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTR 468 (792)
T ss_pred cCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcc
Confidence 1334588889999999999873 233 47889887654332221122222221 123333444433
Q ss_pred C-EEEE-EeCCcEEEEEcCCce----------eeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC-CceEEe
Q 001363 949 T-RFLL-VHETHLAIYEAEELT----------CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCR 1015 (1092)
Q Consensus 949 ~-~la~-~~d~~i~lwd~~~~~----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~-~~~~~~ 1015 (1092)
. ..++ +.||.+++|-....+ |... -.-|..++++++||.||+.|+ ++.|++|.+||..+ .++.+.
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-GSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCT 546 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCccceEEeee-eccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcc
Confidence 3 5555 689999999884322 2111 123689999999999997666 55788999999999 555555
Q ss_pred eccccccCCCCccccccceEE-EECCCCCCEEEEEeCCCcEEEEecCCCCCcc
Q 001363 1016 ILSTAYLRPTTSCLHVYPHAI-AAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus 1016 ~~~~~~~~~~~~~~~v~~~~~-~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
.....+. +...+. +-.+ ....+.....+.+.+|++......|
T Consensus 547 ~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 547 EGSRNWP--------IAELLFTAQTQ--NDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccccccc--------hHhHhhhcccc--cccceeeccCceEehHhhhhhheec
Confidence 5422211 111111 1122 2345555677899999999888888
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-20 Score=203.03 Aligned_cols=276 Identities=12% Similarity=0.165 Sum_probs=231.6
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC-CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..|...-+.++|.|+|++|++++.||.|++|+.... +... .+..+...|.+++... . .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~s--~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACYS--N--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeecc--c--ceEEeeccceEEEee
Confidence 368899999999999999999999999999998876 3222 3333777788877643 4 699999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
...++.-..+....-+++.+++ +.+|.+++.|+.|-.|++-+.........+.+|..+|.++.|+|++++|++...
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 9988876666667788999999 557789999999999999999999999999999999999999999999999876
Q ss_pred CCceeEEEEeCCCCeEEEEEeecccc-----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
+|.|++||+.++.+..++.+.... ...+..++|+|++..++..+.|+.|.+|+..+......+........+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 777999999999888777654311 2346778999999999999999999999999999988887665555588
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccC
Q 001363 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 685 (1092)
.+.|+|+|+|||+++.+|.|.|||.++.. .......|.+++|.|+...+..-...
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITAL 291 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEeec
Confidence 99999999999999999999999999721 14456678999999887776543333
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=213.27 Aligned_cols=287 Identities=13% Similarity=0.175 Sum_probs=228.9
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.|.+-|.++++|...+ .+.+|+. |-|+|||+....... +....-......-|.++.++|||+.|
T Consensus 417 ~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred ccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEecCCCceE
Confidence 5776888999998887 4788876 789999997542111 00000022345789999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
++|+.-.++.|||+.....- ...++..-.-...+++.+||.+ +.++|..||.|.|||+.+...++.|+||.+.+.||
T Consensus 481 ivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 99999999999999875422 1113333344678899999999 88999999999999999999999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
.+ +.||..|.+|+-|.+||.||++.+........ ...|.++.++|.+.++++|-. ++.+.+.... +.....+
T Consensus 558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~kyql 629 (705)
T KOG0639|consen 558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPEKYQL 629 (705)
T ss_pred Ee--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-Cccceee
Confidence 98 55889999999999999999998776655443 347889999999999999876 4446665543 3333444
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
.-|. ..|.++.|.+.|+++++.+.|+.+..|...-|..+...... +.|.++..|.|.+++++|+.|....+|.+
T Consensus 630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4444 89999999999999999999999999999988877766543 46899999999999999999988888864
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=211.16 Aligned_cols=283 Identities=12% Similarity=0.171 Sum_probs=224.1
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001363 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s 811 (1092)
.|..-|.++++|...+.+++++. |.|+|||+..... ...+...+. ....+-|+++.+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-------------------k~PvsqLdc--l~rdnyiRSckL~ 474 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-------------------KSPVSQLDC--LNRDNYIRSCKLL 474 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-------------------CCccccccc--cCcccceeeeEec
Confidence 37888899999999998877765 5899999865311 011111111 1256778999999
Q ss_pred cCCCEEEEEeC-CeEEEEEcCCceee--EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCC
Q 001363 812 KNDAYLFSASG-GVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 888 (1092)
Q Consensus 812 ~dg~~l~~~sd-g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 888 (1092)
|||+.|++|+. .++.|||+...... ..+........+++.+| |.++.++++.||.|.|||+.+...+..|+||.+.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence 99999999986 78999999765432 33443445678899999 8999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCc
Q 001363 889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEEL 967 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~ 967 (1092)
+.||.+++||..|.||+-|.+||-||+..+.... ... +...|.++..+|.+.+|++| .++.+.|......
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlq-----qhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----QHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhh-----hhh----hhhhheecccCCCccceeeecccCcEEEEecCCc
Confidence 9999999999999999999999999999865222 111 11368999999999999997 5567888877654
Q ss_pred eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEE
Q 001363 968 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1047 (1092)
Q Consensus 968 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1047 (1092)
+.-. +.-|...|.++.|++.|+++++.+.|.-+-.|...-|..+.... -.+.|.++.++++ ..+++
T Consensus 625 ~kyq--lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVlsCDIS~d---dkyIV 690 (705)
T KOG0639|consen 625 EKYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISFD---DKYIV 690 (705)
T ss_pred ccee--ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcceeeeeccC---ceEEE
Confidence 4433 44589999999999999999999999999999999987764433 1455676666665 58999
Q ss_pred EEeCCCcEEEEec
Q 001363 1048 VGLTNGEVYVIEP 1060 (1092)
Q Consensus 1048 ~~~~dg~v~~w~~ 1060 (1092)
||+.|..-.||.+
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 9999998888876
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=192.78 Aligned_cols=256 Identities=16% Similarity=0.219 Sum_probs=205.7
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
..-.+|.+-|..+...--|++ |||++.|++|+|+.+.++..... ...|.||+++|..++|..
T Consensus 5 ~idt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahP 67 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHP 67 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeeccc
Confidence 344689999999999999984 89999999999999987654211 112899999999999987
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-c--eeEEEe
Q 001363 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFE 482 (1092)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~--~~~~~~ 482 (1092)
-|.+||+++.||.|.||.-++| ...+..+...|...|++++|.|.+-.+.|++++.||.|.|.+.++. . ......
T Consensus 68 k~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 68 KFGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred ccCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 8999999999999999999988 4445556788999999999999988889999999999999987654 1 224456
Q ss_pred cCCcCeEEEeecccCC-c-----------cEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEccCC----CEE
Q 001363 483 GHGAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANG----RRL 544 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~-~-----------~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~dg----~~l 544 (1092)
.|.-.|++++|.|..- | +.|++|+.|..|+||+.+..+-. ..+..|...|+.++|.|.- .++
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceee
Confidence 7999999999987521 1 57999999999999999876432 3478899999999999964 468
Q ss_pred EEEecCCCCceeEEEEeCCCC--eEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001363 545 FSCGTSKEGESFLVEWNESEG--AIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++|+. ++.+.||-.... .... .+.... ..+..+.|++.|+.|++++.|+.|.+|.-.
T Consensus 227 AS~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 227 ASCSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 88876 667999976521 1111 222222 689999999999999999999999999754
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-23 Score=210.31 Aligned_cols=263 Identities=17% Similarity=0.256 Sum_probs=210.1
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 409 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~ 409 (1092)
--|.++|+.+.+-|....++|+++..+.|.|||..+-.-..... +.| .....|.||...=..++|++ ..-
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------~~~---~Pdl~L~gH~~eg~glsWn~~~~g 191 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------GEC---RPDLRLKGHEKEGYGLSWNRQQEG 191 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------ccC---CCceEEEeecccccccccccccce
Confidence 46888999999999998899999999999999987643222100 000 11224889998888899999 456
Q ss_pred EEEEEeCCCEEEEEEccCCCc----ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC--CCceeEEEec
Q 001363 410 LLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFEG 483 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--~~~~~~~~~~ 483 (1092)
+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.+...+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 889999999999999985433 5556678899999999999998776 79999999999999999 5666778899
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEE-EEEecCCCCceeEEEEe
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l-~~~~~~~~~~~~i~iwd 561 (1092)
|.++|++++|+|.. +.+||+|+.|++|.+||+++... ...+..|...|..+.|+|....+ ++++. ++.+.+||
T Consensus 271 h~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl~vWD 345 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRLNVWD 345 (422)
T ss_pred cCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcEEEEe
Confidence 99999999999874 68999999999999999998664 56889999999999999977654 44443 77799999
Q ss_pred CCCCeEE-----------EEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECC
Q 001363 562 ESEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN 608 (1092)
Q Consensus 562 ~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~ 608 (1092)
+..-... ..+-.|..|...|..+.|+|+..++++ .++|+.+.||.+.
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 8642221 122233444589999999999887655 7899999999975
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-21 Score=209.93 Aligned_cols=289 Identities=11% Similarity=0.054 Sum_probs=212.3
Q ss_pred EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEccC
Q 001363 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG 427 (1092)
Q Consensus 349 llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~~ 427 (1092)
++++++.|+.|++||+.+++.+.. +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999999887654 3333 346789999999987 5667889999999998
Q ss_pred CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec
Q 001363 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507 (1092)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~ 507 (1092)
++... .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++++ +++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence 86544 3433433 567899999984 345566789999999999888877753 3345677785 47788888887
Q ss_pred CC-eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceE
Q 001363 508 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS 582 (1092)
Q Consensus 508 dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~ 582 (1092)
++ .+.+||..+......... ......++|+|+|+++++++. .++.|++||..+++.+..+..+.. ......
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 467789877655443322 234567899999998876542 256799999999988776653210 011235
Q ss_pred EEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeec
Q 001363 583 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 583 ~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 660 (1092)
.+.|+|+++++++ .+.++.+.+||..+++....+... ..+.+++|+|+|++|+++ ..++.|.+||..+++.+..+
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6889999998655 455678999999998887665432 247899999999999886 45899999999999888877
Q ss_pred ccccCceeeeeec
Q 001363 661 GVLSDNLRKLSVN 673 (1092)
Q Consensus 661 ~~~~~~v~~~~~~ 673 (1092)
... ...+.++++
T Consensus 288 ~~~-~~~~~~~~~ 299 (300)
T TIGR03866 288 KVG-RLPWGVVVR 299 (300)
T ss_pred Ecc-cccceeEeC
Confidence 653 333555544
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-21 Score=207.96 Aligned_cols=279 Identities=18% Similarity=0.237 Sum_probs=202.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCceeeecccccCceee
Q 001363 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 669 (1092)
..+++++.|+.+++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||..+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence 467888999999999999999888887543 35789999999876 556678899999877542211110
Q ss_pred eeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEE
Q 001363 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1092)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 749 (1092)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEE
Q 001363 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL 827 (1092)
Q Consensus 750 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~i 827 (1092)
....+..++++|+++.+++++ ++.+++
T Consensus 71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 001123456777777665543 578999
Q ss_pred EEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE-e
Q 001363 828 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G 905 (1092)
Q Consensus 828 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~-s 905 (1092)
||+.+.+.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ .
T Consensus 100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence 99988877776653 33467899999 899999888775 567789998877665542 3346789999999988544 4
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE--EeCCcEEEEEcCCceeeeeeccCCCCCEEE
Q 001363 906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ 983 (1092)
Q Consensus 906 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~ 983 (1092)
.++.|++||+.+++............+.. ......++|+|+++++++ +.++.+.+||..+++.+.... +...+.+
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~ 253 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ 253 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence 69999999999876433211111110100 112457899999998655 456789999999888776543 3457899
Q ss_pred EEEecCCCEEEEE-ECCCcEEEEEcCCCceEEeec
Q 001363 984 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 984 l~fs~dg~~l~t~-~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
++|+|||++|+++ +.+|.|.+||+.+++.+.++.
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999999999876 468999999999999988886
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=203.73 Aligned_cols=289 Identities=15% Similarity=0.227 Sum_probs=224.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC
Q 001363 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 654 (1092)
.+.|+++.|+|....+++++.|++++||.+... ..++.+... ..+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 368999999999999999999999999987643 344554443 34688999999998 8888888888888988754
Q ss_pred ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCcccc
Q 001363 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 734 (1092)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~ 734 (1092)
+.....+
T Consensus 291 k~~k~~~------------------------------------------------------------------------- 297 (514)
T KOG2055|consen 291 KVTKLKP------------------------------------------------------------------------- 297 (514)
T ss_pred ccccccC-------------------------------------------------------------------------
Confidence 2211100
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001363 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
..|. ....+....+||++
T Consensus 298 ---------------------------------------------------~~g~-----------e~~~~e~FeVShd~ 315 (514)
T KOG2055|consen 298 ---------------------------------------------------PYGV-----------EEKSMERFEVSHDS 315 (514)
T ss_pred ---------------------------------------------------CCCc-----------ccchhheeEecCCC
Confidence 0000 12344566778888
Q ss_pred CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC-CeEEE
Q 001363 815 AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGL 892 (1092)
Q Consensus 815 ~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l 892 (1092)
++|+..+ .|.|.+....+++.+..++ -.+.|..++|+. |++.|++.+.+|.|.+||+....++.++....+ .-+++
T Consensus 316 ~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~ 393 (514)
T KOG2055|consen 316 NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSL 393 (514)
T ss_pred CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeee
Confidence 8888877 5888888888888888887 567899999998 889999999999999999999999988874222 23568
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCce-eeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE---eCCcEEEEEcCCce
Q 001363 893 VFSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELT 968 (1092)
Q Consensus 893 ~~spdg~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~---~d~~i~lwd~~~~~ 968 (1092)
+.|++|.+||+||..|.|-|||.++--. ...+++.....-. ..|+++.|++|+.+||.+ ..+.+++-.+.+..
T Consensus 394 ~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 394 CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 8889999999999999999999765211 1123344433333 379999999999999984 56789999999888
Q ss_pred eeeeeccCC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 969 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 969 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
....|.... -+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus 471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 877765443 5789999999999999999999999999874
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=204.55 Aligned_cols=288 Identities=14% Similarity=0.215 Sum_probs=233.2
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC-EEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG 412 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~la 412 (1092)
.+.|++|.|+|.-. +|.+|+.|++++||.++........+ +.-...+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 35999999999998 89999999999999987543222111 222457999999999999 889
Q ss_pred EEeCCCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
+++....++.||+.+.+..+ +..+.++. ..+.....|++++ +|+..|..|.|.+-...+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999876543 22344554 3577888999999 89999999999999999999999987 56789999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC------
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------ 564 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~------ 564 (1092)
+|+ .+++.|++++.+|.|.+||++...+...+...+. .-+++|.+++|.++++|+. .|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 995 5778999999999999999999988887765554 4578899999999999976 67799999653
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCC-CCCCCCceEEEccCCCEEEEEe
Q 001363 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
.+++..+.... ..|..+.|+++.+.|+.+| .+..+++-++.+......++.. .....|+|++|+|.+.++|+|.
T Consensus 425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 34455555444 6899999999999988877 5678999998887666655443 3345689999999999999999
Q ss_pred CCCeEEEEECC
Q 001363 642 NENRIKILETP 652 (1092)
Q Consensus 642 ~dg~i~iw~~~ 652 (1092)
.+|.+.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999864
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=204.74 Aligned_cols=293 Identities=15% Similarity=0.207 Sum_probs=230.7
Q ss_pred EEEEEcCCC-cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC-CCcEEEEEECCCCCEEEEEe-CCCEEEEEEc
Q 001363 349 LLLVGTNVG-DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 425 (1092)
Q Consensus 349 llasg~~dg-~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~~las~~-~d~~i~iwd~ 425 (1092)
++.+++.|. ++.+||+.+|....++ ++. ...-.++..- .+.|++++. ....+.+|.+
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~y-------------------kg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i 68 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQY-------------------KGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEI 68 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEe-------------------cCcccccchhhhhh-chhheeeecccCcccccccc
Confidence 344555554 5999999999876542 111 0010111110 246777774 3457999999
Q ss_pred cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEE
Q 001363 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505 (1092)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~ 505 (1092)
.......+.. --.++|.+++-+|+|. +|+.|+..+.|++|.+.+|..+..+.+|-..|+++.| +.||.+|++|
T Consensus 69 ~k~~~~~q~~---v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTg 141 (476)
T KOG0646|consen 69 LKKDQVVQYI---VLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITG 141 (476)
T ss_pred Cchhhhhhhc---ccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEec
Confidence 8655444221 2456899999999998 7888879999999999999999999999999999999 5688999999
Q ss_pred ecCCeEEEEEcC---------CCCceEEecCCCCceEEEEEccC--CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001363 506 SVDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 506 ~~dg~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
+.||.|.+|++. +..+...+..|.-+|+.+...+. ..++++++. |.++++||+..|.++.++...
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP 217 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC
Confidence 999999999763 33456678888889999888765 457888876 778999999999999888764
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------ceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
..+.+++.+|.+..+++|+.+|.|.+.++..- ..+..+.+|.....|+|++.+-||.+|+
T Consensus 218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 48999999999999999999999998876542 2334455555545899999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeecccccCceeeeeecCCC
Q 001363 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1092)
+|+.||.+.|||..+.+.++++....++|+.+.+.|..
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 99999999999999999999988888999999987653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-22 Score=189.02 Aligned_cols=320 Identities=13% Similarity=0.198 Sum_probs=233.1
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CC
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg 408 (1092)
.+.|.+.|+.+...|...+++.+|+.||.|.|||++........-+ +-+ ..| .....--.+|.-.|..+.|-| |.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c--~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKC--IVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eee--eccccCCccceeeeeeeEEeeecC
Confidence 3568899999999997766899999999999999986542110000 000 001 112223567899999999999 77
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCC-cEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
-.+.+++-|.+++|||..+-+... .+ ...+.|.+-++||-.. .-++++|..|-.|++-|+.+|..-+++.||.+.
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred ceeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence 788899999999999999864332 33 2456788888888543 326788888899999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
|.++.|+|..+ -.|++|+.||.|++||++.. .+..++.|..+++.
T Consensus 191 vlaV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------sgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 191 VLAVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------SGCFRVLDQHNTKR 235 (397)
T ss_pred eEEEEeccCce-eEEEecCCCceEEEEEeecc----------------------------------cceeEEeecccCcc
Confidence 99999998754 68999999999999998742 11234444444333
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC----CCCCCCceEEEccCCCEEEEEeCC
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
...++....|.+.|..++|+.++.++++++.|..+++|+..+|+....-..+ .....-..+. +.+...++.--.+
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~ 314 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPND 314 (397)
T ss_pred CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecC
Confidence 3333333334589999999999999999999999999999988654322111 0000001122 3344556656667
Q ss_pred CeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecc
Q 001363 644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 644 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~ 715 (1092)
+.+.++++-.+..+..+.+|...+.|.++. |+-+...++..|+.+..|-.
T Consensus 315 ~~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 315 GSLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CeEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCccccccc
Confidence 999999999999999999998888888775 56667788888888888874
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=192.31 Aligned_cols=300 Identities=15% Similarity=0.191 Sum_probs=223.0
Q ss_pred CCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001363 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
..|..+..+|.... -.|+.||+.|. +||+|..||.|.|||..|-..-+. +.+|..+|+
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~ 69 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT 69 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence 45666667776443 78999999998 799999999999999998765443 889999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+++||+||+.|+++|.|..|.+||+..|.+++++ ....+|+.+.|.|-.....+++ -.+..-.+-++..++....
T Consensus 70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~~L 144 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHSVL 144 (405)
T ss_pred EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEE-EecCCcEEEEecCCceeec
Confidence 9999999999999999999999999999877643 2567899999999877634443 3344455555544322111
Q ss_pred EecCCcCeEEE--eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 481 FEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 481 ~~~~~~~v~~i--~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
-....+..+.. +-..++.|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|++++..+. +..|
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvI 220 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVI 220 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceE
Confidence 11111111111 11235577899999999999999999998888776665 68999999999999999876 7789
Q ss_pred EEEeCCCC-------eE--EEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 558 VEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 558 ~iwd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+.|+++.- +. .+.++..- ..-.-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ .....
T Consensus 221 R~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~D 298 (405)
T KOG1273|consen 221 RTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLD 298 (405)
T ss_pred EEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheee
Confidence 99987621 11 11111111 123446789999999998876 456799999999999999987654 35678
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
+.|+|-...+++. ..|.+++|.....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeecc
Confidence 8999988777777 6799999987643
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=188.16 Aligned_cols=270 Identities=14% Similarity=0.110 Sum_probs=211.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
....|+++.|+|.+..|++++.||.+++||+...+... . -.|..++.+++|.++.+ +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~-~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---K-FKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---h-eecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 57899999999999999999999999999999875443 2 25899999999998765 99999999999999999
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
+.... +..|..+|.++...+.. ..+++|+.|++|++||.+.......+...+ .|.++.. .|..|++++. +
T Consensus 85 ~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D 154 (323)
T ss_pred Cccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence 87654 44699999999987544 479999999999999998754444444333 6665554 5677888765 5
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeCCCC-------CC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP 623 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 623 (1092)
..+.+||+++........... -...+.++++.|++.-+++++-||.|.+=.++.. +....+..|.. .-
T Consensus 155 r~v~iyDLRn~~~~~q~reS~-lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESS-LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhcccc-ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 669999998766543222111 1357899999999888999999999988655544 23333443321 12
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccc
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (1092)
+|++++|+|-...|++|+.||.|.+||..+.+.+..+......|..++|+.++..++++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 58899999999999999999999999999999999998888889999998665555443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-22 Score=191.08 Aligned_cols=282 Identities=15% Similarity=0.211 Sum_probs=215.1
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999875443 5789999999999999999 8999999999999999999999
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----ceEEEEEccCCCEEEEEecCCCCc
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
+.+. ...+|..+.|+|......+++--. ..-.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~-~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIME-ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEec-CCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9987 788999999999877655555433 3344455554222221111111 1223468899999999975 7
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE---------EEEeCCCCCCCC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL---------TTIDAGGGLPEN 625 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v 625 (1092)
|.+.++|..+-+++..++-.. ...|..+.++..|..++.-+.|..||.|+...-... +.+..--....-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 779999999999998887654 467899999999999999999999999987631110 111100011234
Q ss_pred ceEEEccCCCEEEEEeC-CCeEEEEECCCCceeeeccccc-CceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 626 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
.+++|+.+|.+++.++. ...++||....|..++.+.|.. .....+.+.|.... +++
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~----------------------i~s 310 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI----------------------IAS 310 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee----------------------eee
Confidence 68999999999988875 5789999999999999999887 56667777754433 222
Q ss_pred eccccccceeccc
Q 001363 704 VEAENKSEVEKPL 716 (1092)
Q Consensus 704 ~~~d~~i~lw~~~ 716 (1092)
- ..|.+.+|...
T Consensus 311 i-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 311 I-ASGVVYIWAVV 322 (405)
T ss_pred c-cCCceEEEEee
Confidence 2 55889999844
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=198.28 Aligned_cols=305 Identities=17% Similarity=0.195 Sum_probs=229.1
Q ss_pred ceeeecccCCCCceEEeecCCCc-eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
......+-|.++|++++|+|... .++|+|+..|.|-+||+.+.+...... .++..|..+|.++.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~ 241 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLK 241 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceE
Confidence 33455667888999999999876 799999999999999996544333211 12778999999999
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEE
Q 001363 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSF 481 (1092)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~ 481 (1092)
|+| +-..+++.|.||+|++-|++++.. .....+..-...+..+.|+.+.. .++.+..=|...+||.+++.. ...+
T Consensus 242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~ 318 (498)
T KOG4328|consen 242 FSPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENL 318 (498)
T ss_pred ecCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhh
Confidence 999 567888999999999999997642 22223333445678889998888 677788778999999998765 5667
Q ss_pred ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.-|...|.+++++|-.. .++++++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. +..|
T Consensus 319 ~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~I 393 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEI 393 (498)
T ss_pred hhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCce
Confidence 77999999999998754 79999999999999999865433 345567889999999998888888765 6679
Q ss_pred EEEeCC----CCeEEEEEeeccccCC--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 558 VEWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 558 ~iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++||.. .-....++.....+.. ......|.|+..++++|-.-..|-|+|-..++.+..+..+.......-..|+
T Consensus 394 Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH 473 (498)
T ss_pred EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence 999983 2233333332221112 2344679999999999999999999999999988776554332222345799
Q ss_pred cCCC-EEEEEeCCCeEEEEECC
Q 001363 632 KNGT-LLAVIANENRIKILETP 652 (1092)
Q Consensus 632 ~~~~-~l~~~~~dg~i~iw~~~ 652 (1092)
|-+. +++.++..|.|+||..+
T Consensus 474 P~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 474 PMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccceeccCCccceEEEEecC
Confidence 9877 44445557889988654
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-21 Score=183.97 Aligned_cols=305 Identities=15% Similarity=0.181 Sum_probs=217.4
Q ss_pred cccccEEEEEEec-CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 732 VKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 732 ~~~~~i~~l~~s~-~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
.|.+.|+++.+.+ .|+++++++.||.+.+||++............ ...|+... -...+|...|..+.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~----------k~~c~v~~-~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA----------KHKCIVAK-QHENGHKYAISSAIW 109 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee----------heeeeccc-cCCccceeeeeeeEE
Confidence 3889999999877 68999999999999999998654211111110 01111111 112258899999999
Q ss_pred ecCC-CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC--CCCEEEEEeCCCcEEEEEcCCceeeEeecccc
Q 001363 811 SKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHS 886 (1092)
Q Consensus 811 s~dg-~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 886 (1092)
-|-. ..+.+++ |.++++||..+.+....|. -.+.|.+-++||- ...++|+|..|-.|++.|+.+|.....+.||.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 8844 4455555 8999999999998888876 5567777777772 13488999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCc--eee-----eeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCC
Q 001363 887 KRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWG--IQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 957 (1092)
Q Consensus 887 ~~V~~l~~spdg~~-l~s~s~Dg~I~iwd~~~~~--~~~-----~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~ 957 (1092)
+.|.++.|||...+ |+||+.||.|++||+..-. ... .+..+..+....+.+.+..++|+.||.++++ +.|.
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 99999999998765 7899999999999997531 000 0111111112223358999999999999998 8999
Q ss_pred cEEEEEcCCceeeeeecc--CCCC---CEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCcccccc
Q 001363 958 HLAIYEAEELTCLKQWFP--ISSV---PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1032 (1092)
Q Consensus 958 ~i~lwd~~~~~~~~~~~~--~h~~---~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1032 (1092)
.+++|+..+|+....-+. .|+. .-..+. +.+...++---.|+++.++++-.|..+.++. .|...+
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~--------~h~k~i- 338 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS--------THLKRI- 338 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee--------ccccee-
Confidence 999999988764322111 1211 111122 4444455555567899999999999988887 222222
Q ss_pred ceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1033 PHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1033 ~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
.|.++.| +=+...+|..|+.+..|-.
T Consensus 339 -~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 339 -NCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -eEEeecC-chhhhhccccCCccccccc
Confidence 3667777 4577999999999999987
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-21 Score=200.44 Aligned_cols=450 Identities=14% Similarity=0.140 Sum_probs=289.9
Q ss_pred ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce
Q 001363 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 522 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 522 (1092)
.|..++|-|||.+++++. +..+.+||...|..++++++|.+.|+++++ +.||+.+++|+.|+.|.+|.-.....
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEecccccce-
Confidence 799999999999744443 347999999999999999999999999999 55889999999999999996543222
Q ss_pred EEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcE
Q 001363 523 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1092)
Q Consensus 523 ~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1092)
.--.|...|.++.|+|-...|++|+-+. .-+|........+ .+. ...+.+++|..||++++.|-.+|+|
T Consensus 88 -LkYSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K-~ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 88 -LKYSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSK-HKS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred -eeeccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHh-hhh----heeEEEeeecCCCcEEEEeccCceE
Confidence 2234777999999999999999998542 5678765443322 111 2468899999999999999999999
Q ss_pred EEEECCCCceEEEEeCCCCCCCCceEEEccCC-----CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCc
Q 001363 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677 (1092)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 677 (1092)
.+-+......+..-...+...+|.+++|+|.. ..+++.....++.++.+.. +.+..-+...-.-.|+.+
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisY----- 230 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISY----- 230 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhhee-----
Confidence 99875444444433444556789999999953 4677777777777777653 233222222222223333
Q ss_pred cccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCe
Q 001363 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 757 (1092)
Q Consensus 678 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 757 (1092)
-++|.+++.|+.|+.+.+|..+.-..+ . . ......|..++..|+++.++.|..||+
T Consensus 231 -----------------f~NGEy~LiGGsdk~L~~fTR~GvrLG---T--v--g~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 231 -----------------FTNGEYILLGGSDKQLSLFTRDGVRLG---T--V--GEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred -----------------ccCCcEEEEccCCCceEEEeecCeEEe---e--c--cccceeEEEEEEccCCceEEEEEccCe
Confidence 378999999999999999874421111 0 0 114568999999999999999999999
Q ss_pred eEEEeecCCCcCcC---------------------cc---------------------cccccCCccccCCCCCceeeec
Q 001363 758 HLMWRWPRNDLTLS---------------------TE---------------------ATTKVPPRLYQPRHGPQFMVND 795 (1092)
Q Consensus 758 i~~w~~~~~~~~~~---------------------~~---------------------~~~~~~~~~~~~~~g~~~~~~~ 795 (1092)
+-.|++-....+.- +. .+....+.+|...++. .....
T Consensus 287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~-~~~mh 365 (1081)
T KOG1538|consen 287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSED-LSDMH 365 (1081)
T ss_pred eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccc-cccch
Confidence 99998765432000 00 0000112222222211 00000
Q ss_pred CCCCC-CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001363 796 TTDSN-SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866 (1092)
Q Consensus 796 l~~~~-~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1092)
.+.+. -.....|--+--.++.++.+.+..+..+|...-+. ++-++... .|.+..-|+.|..||
T Consensus 366 Y~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~G--------GP~gREgL~vGlknG 437 (1081)
T KOG1538|consen 366 YRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIG--------GPPGREGLLVGLKNG 437 (1081)
T ss_pred hHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhc--------CCCCcceeEEEecCC
Confidence 00000 00000111111134455555566777777653211 11111111 122566788899998
Q ss_pred cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEcc
Q 001363 867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1092)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 946 (1092)
.|.-.=+++.-++-... ....|.|+..+...+.||+..+.++..++|+.+++. .++.+ .+.+++|+.
T Consensus 438 qV~kiF~dN~~PiLl~~-~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT 504 (1081)
T KOG1538|consen 438 QVLKIFVDNLFPILLLK-QATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNT 504 (1081)
T ss_pred cEEEEEecCCchhheec-ccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeec
Confidence 77544455443333333 456799999999999999999999999999999763 22332 477899988
Q ss_pred CCCEEEE-EeCCcEEE
Q 001363 947 DQTRFLL-VHETHLAI 961 (1092)
Q Consensus 947 dg~~la~-~~d~~i~l 961 (1092)
...-+.+ +..|.+.|
T Consensus 505 ~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 505 QCEDMLCFTGGGYLNV 520 (1081)
T ss_pred cccceEEEecCCceEE
Confidence 7655544 55565544
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=199.89 Aligned_cols=225 Identities=16% Similarity=0.177 Sum_probs=190.8
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC--
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-- 473 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-- 473 (1092)
.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+. .+.+|-..|+|+.|+.||. +++|||.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 3689999999999999999999999999999998877 5679999999999999999 89999999999999753
Q ss_pred -------CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 474 -------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 474 -------~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
+-++++.|..|.-+|+++...+.+-..+++|+|.|.++++||+..+.....+..+ ..+.+++.+|-++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 3467889999999999999877766689999999999999999998777766544 47899999999999999
Q ss_pred EecCCCCceeEEEEeCCC----------------CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001363 547 CGTSKEGESFLVEWNESE----------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
|+. ++.|.+.++.. +..+..+.||. ....|+|++++-||..|++|+.||.|+|||+.+.
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~-~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE-NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeecccc-CCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 976 55677665432 23456677777 1138999999999999999999999999999999
Q ss_pred ceEEEEeCCCCCCCCceEEEccC
Q 001363 611 QLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
++++++... ..+|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999888732 345888888663
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=198.39 Aligned_cols=253 Identities=19% Similarity=0.311 Sum_probs=202.5
Q ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCccc-------ceEEEcccccceeEEEEecCCCcEEEEEEeC
Q 001363 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDAR-------QQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~~-------~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~ 463 (1092)
...|.+.|+.+.+-|. ...+|+.+..+.|.|||...-.... .-..+.+|...-..++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 4459999999999995 4566777888999999997543222 23368899998888999998766 7999999
Q ss_pred CCcEEEEECCCCc-------eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC--CCCceEEecCCCCceEE
Q 001363 464 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 464 d~~i~vwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~ 534 (1092)
|++|++||+.... ....+.+|...|..++|++... .++.+++.|+.+.|||.+ +.+.......|..++.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999987543 2467789999999999998754 689999999999999999 55566678889999999
Q ss_pred EEEccCCCE-EEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 001363 535 MAYSANGRR-LFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 535 ~~~s~dg~~-l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++|+|-+.+ ||+++. +++|.+||+++. +.+.++.+|. ..|..+.|+|.. ..+++++.|+.+.+||+..-.
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 999996655 555554 777999999865 4567788877 999999999986 556778899999999987522
Q ss_pred eE------------EEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCC
Q 001363 612 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 653 (1092)
Q Consensus 612 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~ 653 (1092)
.. ..+...++...|..+.|+|+.. .++++++|+.+.||....
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 21 2244556677899999999766 567788999999999774
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=203.29 Aligned_cols=322 Identities=12% Similarity=0.166 Sum_probs=245.1
Q ss_pred cccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001363 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
....+|..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++++..+ .+
T Consensus 384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~--------------------d~ 442 (733)
T KOG0650|consen 384 DLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQF--------------------DS 442 (733)
T ss_pred hcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEee--------------------cc
Confidence 345567788899999999999999999998 699999999999999999999986432 35
Q ss_pred cEEEEEECCCCC--EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEE----EeCCCcEEEEE
Q 001363 398 SVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT----CGDDKTIKVWD 471 (1092)
Q Consensus 398 ~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s----~~~d~~i~vwd 471 (1092)
.|.|++|+|.+. .||++-... +.|-+..-|..+... .+ .. .|++ ...|+.+..|.
T Consensus 443 ~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~-----~t-----------~e--ll~~~~~~~~p~~~~~~W~ 503 (733)
T KOG0650|consen 443 EIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG-----PT-----------KE--LLASAPNESEPDAAVVTWS 503 (733)
T ss_pred eeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc-----ch-----------hh--hhhcCCCccCCcccceeec
Confidence 899999999664 455554444 666666555322210 00 00 1221 12355778886
Q ss_pred CCCC----ceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001363 472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 472 ~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1092)
-... .-++..-.|...|..+.|+. .|.+|++...+ ..|.|.++........+....+.+.++.|+|...+|
T Consensus 504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~l 581 (733)
T KOG0650|consen 504 RASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYL 581 (733)
T ss_pred hhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceE
Confidence 4421 12344556999999999965 56799988664 458899998877777777777889999999999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCC
Q 001363 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLP 623 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~ 623 (1092)
++++ ...|++||+..+++++.+.... ..|..++.+|.|..|+.|+.|+.+..+|+.-. ++.+++..|. .
T Consensus 582 fVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--~ 651 (733)
T KOG0650|consen 582 FVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--K 651 (733)
T ss_pred EEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--h
Confidence 8887 4569999999988887776655 68999999999999999999999999999854 4556666554 4
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECC------CC---ceeeecccccCc----eeeeeecCCCccccccccCCceee
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVSV 690 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~------~~---~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~ 690 (1092)
.+++|+|++.-.++++|+.||++.|+... .+ -++..+++|... |....|+
T Consensus 652 avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH----------------- 714 (733)
T KOG0650|consen 652 AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH----------------- 714 (733)
T ss_pred hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc-----------------
Confidence 68999999999999999999999998532 11 345566777655 5555565
Q ss_pred cCCCCCCCccceeecccccccee
Q 001363 691 NEDPKEDVKPEISVEAENKSEVE 713 (1092)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~lw 713 (1092)
|...++++++.||+|++|
T Consensus 715 -----P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 -----PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred -----CCCceEEecCCCceEEee
Confidence 667889999999999998
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-20 Score=193.86 Aligned_cols=273 Identities=13% Similarity=0.147 Sum_probs=203.0
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|..++|-|||..++..++ ..+.|||++.|..+.+ +++|.+.|.|+|||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 8999999999987666544 6899999999998876 889999999999999999999999
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
.|..|.+|+..-...++ ..|...|.|+.|+|-.. .|+||+-. ..-+|..+..... .|...+..++.+.
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence 99999999976533232 26999999999999988 68888754 5678986554322 2333333333344
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCceEEEEEccCCC-----EEEEEecCCCCceeEEEEeCCCCeE
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~dg~-----~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
..||++++.|-.+|+|.+-+-. +++...+.. ...+|.+++|+|... .+++.-. ..++..+.+ +|+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence 7799999999999999987533 333333333 556899999999642 2333321 223443333 3444
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
+..-.... -...|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++... ...|..++..|++++++.|+.||+|.
T Consensus 215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeee
Confidence 43322222 34678889999999999999999999975 45666666543 34699999999999999999999999
Q ss_pred EEECCC
Q 001363 648 ILETPE 653 (1092)
Q Consensus 648 iw~~~~ 653 (1092)
.|++..
T Consensus 289 CyNl~f 294 (1081)
T KOG1538|consen 289 CYNLIF 294 (1081)
T ss_pred hhhhHH
Confidence 998763
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-23 Score=219.25 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=212.9
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
...|...|.++..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 44588999999987789999999999999999987654444 5889999999999999988 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
++.++.++++.+|...+.++.|+| -+.+.++|+.|+.+++||.+...+...+.+|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 999999999999999999999976 4579999999999999999999999999999989999999999999999875
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
+..+.+||...|+....|.+|. +.+..+.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn 247 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN 247 (825)
T ss_pred --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence 6789999999999999999998 89999999999888889999999999999998888776654 4569999999
Q ss_pred cCCCEEEEEeCC
Q 001363 632 KNGTLLAVIANE 643 (1092)
Q Consensus 632 ~~~~~l~~~~~d 643 (1092)
|++..+++|...
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 999998888654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-21 Score=206.94 Aligned_cols=244 Identities=16% Similarity=0.233 Sum_probs=197.0
Q ss_pred EEEEec-CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC-CE
Q 001363 739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AY 816 (1092)
Q Consensus 739 ~l~~s~-~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg-~~ 816 (1092)
.+.|.. +.++|++++.+|.|.+||+..... . .....+ .+|...+.++.|++.. .+
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------n--k~l~~f--~EH~Rs~~~ldfh~tep~i 148 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------N--KLLTVF--NEHERSANKLDFHSTEPNI 148 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCcccc-------------------c--hhhhHh--hhhccceeeeeeccCCccE
Confidence 344443 456688888899999999865210 0 000011 1499999999999864 67
Q ss_pred EEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc-eeeEeeccccCCeEEEEE
Q 001363 817 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVF 894 (1092)
Q Consensus 817 l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~ 894 (1092)
|++|+ ||.|++||+...+...++.+....|+.+.|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 77787 8999999999999999999988999999999988999999999999999999864 577888999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE----EeCCcEEEEEcCCceee
Q 001363 895 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCL 970 (1092)
Q Consensus 895 spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~----~~d~~i~lwd~~~~~~~ 970 (1092)
+|++.+|||||+|++|+|||..+++.....++.+. .++..+.|-|+..+.++ +.|..|+|||+...-..
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 99999999999999999999998775554455443 25899999999876554 36788999999987777
Q ss_pred eeeccCCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCce
Q 001363 971 KQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~-dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
...+..|...++.++|.. |-..+.+++.||+|..-.++++..
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 777888999999999965 556888999999987666655543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=197.33 Aligned_cols=321 Identities=15% Similarity=0.231 Sum_probs=236.8
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC--EEEEEeCCCe
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANENR 645 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~ 645 (1092)
-..+.||. +.|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.+++|+|.+. .||++..+.
T Consensus 393 ~lvyrGHt---g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 393 ALVYRGHT---GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eeeEeccC---CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecCc-
Confidence 34567777 999999999999999999999999999999999999998764 489999999665 455554443
Q ss_pred EEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceee----ccccccceeccccccCc
Q 001363 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV----EAENKSEVEKPLFARPS 721 (1092)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~----~~d~~i~lw~~~~~~~~ 721 (1092)
+.|.+..-|..+..- +....++++ ..+..+-.|.-...+..
T Consensus 466 ~~ivnp~~G~~~e~~-----------------------------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~ 510 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVG-----------------------------------PTKELLASAPNESEPDAAVVTWSRASLDEL 510 (733)
T ss_pred eEEeCccccchhhhc-----------------------------------chhhhhhcCCCccCCcccceeechhhhhhh
Confidence 555554433111110 000111111 12234556654322211
Q ss_pred c---ccccccCCccccccEEEEEEecCCcEEEEeecC---CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeec
Q 001363 722 E---CQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 795 (1092)
Q Consensus 722 ~---~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 795 (1092)
+ |..+ .|...|..+.|...|.+|++...+ ..+.|+++..... ...+.
T Consensus 511 ~~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------------------Q~PF~ 563 (733)
T KOG0650|consen 511 EKGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------------------QSPFR 563 (733)
T ss_pred ccceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------------------cCchh
Confidence 1 2222 278899999999999999988764 4566666544321 11111
Q ss_pred CCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001363 796 TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 796 l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
-..+.|.++.|+|...++++++...|+|||+...+.+..+......|..++++| .|.-|+.|+.|+.+..+|+.-
T Consensus 564 ----kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 564 ----KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred ----hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEccc
Confidence 156778999999999999999999999999999888888888888999999999 888889999999999999985
Q ss_pred c-eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCc--eeeeeeeecCCCCcCC-CCCceEEEEccCCC
Q 001363 876 S-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD--GWG--IQTCRSLQTPDGVMTL-APSETHIQFHKDQT 949 (1092)
Q Consensus 876 ~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~--~~~--~~~~~~~~~~~~~~~~-~~~v~~l~~s~dg~ 949 (1092)
+ ++.+++.-|...|++++|++.-.++++|+.||++.|+--. +.- -....+++.+.+|... ...|..+.|+|..-
T Consensus 639 sskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp 718 (733)
T KOG0650|consen 639 SSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP 718 (733)
T ss_pred CcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc
Confidence 4 6778899999999999999999999999999999988421 100 0112355666666542 13588889999999
Q ss_pred EEEE-EeCCcEEEE
Q 001363 950 RFLL-VHETHLAIY 962 (1092)
Q Consensus 950 ~la~-~~d~~i~lw 962 (1092)
+|.+ |.||+|++|
T Consensus 719 WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 719 WLFSAGADGTIRLF 732 (733)
T ss_pred eEEecCCCceEEee
Confidence 9998 789999998
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-20 Score=184.29 Aligned_cols=308 Identities=15% Similarity=0.154 Sum_probs=219.0
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
.+..|+ +|..+.|.+++...+|||+.|..|+||.++.+..-.. .....-...|..|...|+++.|+|+|
T Consensus 9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCc
Confidence 344565 9999999998865799999999999999976543321 00111223488999999999999999
Q ss_pred CEEEEEeCCCEEEEEEcc--------C-----CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 409 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
..||+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|.++++||+..|
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence 999999999999999887 3 122233446789999999999999999 8999999999999999999
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------------------CCC----Cce
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGC 532 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------~~~----~~i 532 (1092)
..+..+..|...|..++|.|. ++++++-+.|...+.+.+.......... .|. .-.
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl--~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPL--NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eeEeeccccccccceeecchh--hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 999999999999999999654 4788888888766666554332211100 011 124
Q ss_pred EEEEEccCCCEEEEEecCCC-----CceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcC------------------
Q 001363 533 TRMAYSANGRRLFSCGTSKE-----GESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDT------------------ 588 (1092)
Q Consensus 533 ~~~~~s~dg~~l~~~~~~~~-----~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~------------------ 588 (1092)
..++|+|||..+++...--+ ..+..++++-.. .+....+.+.. .+...+.|+|
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence 56889999999886543111 023345554331 12222233322 3444444443
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce
Q 001363 589 AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
-+-.+++++ ...|++||.++..++.....- +...++.++|++||..+++.+.||...+...+..+.
T Consensus 311 yrlvfaiAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 311 YRLVFAIAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cceEEEEee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 222344444 467999999998887766432 345799999999999999999999988877765543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=203.54 Aligned_cols=284 Identities=16% Similarity=0.259 Sum_probs=217.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCccc-ceEEEccc---ccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAH---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~~~~h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
....+|+..++-..|+.++.. .++||.+....... .....+.. ...+..+.|..-..+ +|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence 456677888998889888665 47888776432211 11111111 123556778754444 8999999999999999
Q ss_pred CC---CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC-CCEEEEEe
Q 001363 473 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-GRRLFSCG 548 (1092)
Q Consensus 473 ~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~ 548 (1092)
.. .+.+..|..|...++++.|++... .+|++|+.||+|++||++......++......|+.+.|+|. +..++++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 87 677788999999999999997643 69999999999999999999999988888889999999994 55666665
Q ss_pred cCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 549 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
. .|.+++||++.. ++...+..|. ++|.++.|+|++.+|++||.|++|+|||..+.+.......+. ..++.+
T Consensus 197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r 268 (839)
T KOG0269|consen 197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR 268 (839)
T ss_pred C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence 3 678999999854 4556677777 999999999999999999999999999998765443333332 356899
Q ss_pred EEEccCCC-EEEEEe--CCCeEEEEECCCC-ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 628 ICFNKNGT-LLAVIA--NENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 628 v~~s~~~~-~l~~~~--~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
|.|-|+.. +||+++ .|..|+|||+... -+...+..|...++.++|. +.|...+.+
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s 327 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS 327 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence 99999655 566554 3889999999866 4556777888888888887 345666778
Q ss_pred eccccccce
Q 001363 704 VEAENKSEV 712 (1092)
Q Consensus 704 ~~~d~~i~l 712 (1092)
++.|+++..
T Consensus 328 ~sKD~tv~q 336 (839)
T KOG0269|consen 328 CSKDGTVLQ 336 (839)
T ss_pred ecCccHHHH
Confidence 888887654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-20 Score=192.96 Aligned_cols=286 Identities=17% Similarity=0.152 Sum_probs=198.1
Q ss_pred cEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeE
Q 001363 747 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI 825 (1092)
Q Consensus 747 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i 825 (1092)
..|+.+..+|.|.+++.....+. ++... +.. ...|.+.|..+.+.|....|++++ |.++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~-lk~----~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LEERQ-LKK----PLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hhhhh-hcc----cccccceeEeeccCCCceeEEEccCCcee
Confidence 34666777899999986543221 11100 111 114999999999999767778776 7889
Q ss_pred EEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce--------------------e-----
Q 001363 826 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------V----- 878 (1092)
Q Consensus 826 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~----- 878 (1092)
++||+++.+++.. +.+|.+.+.+++|.|.+...+++|+.||.|.|||+.-.. .
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998877 889999999999999889999999999999999985321 0
Q ss_pred --eEeeccccCCeEE---EEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeee-eee--cCCCCcCCCCCceEEEEccCCC
Q 001363 879 --ISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCR-SLQ--TPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 879 --~~~l~~h~~~V~~---l~~spdg~~l~s~s~-Dg~I~iwd~~~~~~~~~~-~~~--~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
+....+|...|.+ +.+.-|...||++|. |+.|+|||+......... ... ....+..-.-.+.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 1222345566666 666678899999998 999999999875422211 111 1111111112466777777788
Q ss_pred EEEE-EeCCcEEEEEcCCceeeee-eccCC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCC
Q 001363 950 RFLL-VHETHLAIYEAEELTCLKQ-WFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus 950 ~la~-~~d~~i~lwd~~~~~~~~~-~~~~h--~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
+|.+ +.|+.|++|++.+...-.. .+.++ ...-..-..||||.+|++|+.|..+++|.+...+.--... ..
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~G-- 358 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----LG-- 358 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----hC--
Confidence 8877 7999999999975432211 12222 1111223468999999999999999999999876642222 11
Q ss_pred CccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1026 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
|.-+|. +++|.|.+-.-++++++|.++++|++.
T Consensus 359 -ht~eVt--~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 359 -HTREVT--TVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred -cceEEE--EEeeccccCCCceeeccCcceEEEecc
Confidence 334444 555555445678888999999999994
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-21 Score=208.47 Aligned_cols=239 Identities=11% Similarity=0.205 Sum_probs=213.3
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+....|+..|.|+..-..++ .+++|+.|..+-+|.+..-..+.. +.+|+.+|.++.|+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS 81 (825)
T ss_pred hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence 44567888999998866666 899999999999999876544432 7899999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
..+|++|+.+|+|++||++.++.++ ++.+|...+.++.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence 9999999999999999999988777 7889999999999999999 7899999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
|..+.| +++|.++++++.|.++++||+..++....+..|...+..+.|+|..-.++.|+. +..+++||+++.+.
T Consensus 157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV 230 (825)
T ss_pred eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence 999999 458899999999999999999999999999999999999999999888888876 67799999999888
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 600 (1092)
+....... ..|.+..|+|++..+++|....
T Consensus 231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence 87777665 8899999999999888876543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-19 Score=171.79 Aligned_cols=268 Identities=13% Similarity=0.200 Sum_probs=195.7
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 408 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg 408 (1092)
.+|.+-|.|+.|.+-|++ +|+|+.|++|+|||...+.-....+ ...+.|.+.|..+.|.+ -|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCcccc
Confidence 589999999999999996 8999999999999975543222111 11556999999999986 59
Q ss_pred CEEEEEeCCCEEEEEEccC------CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-----
Q 001363 409 SLLGVAYSKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR----- 477 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~------~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~----- 477 (1092)
+.+|+++.|+++.||.-.. +.......++......|+.+.|.|....+.+++++.||.+|||+.-..--
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 9999999999999998631 11222334566777899999999988777999999999999998654322
Q ss_pred -eEEEe-------cCCcCeEEEeecccCCc-cEEEEEecC-----CeEEEEEcCCCCc----eEEecCCCCceEEEEEcc
Q 001363 478 -TYSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSA 539 (1092)
Q Consensus 478 -~~~~~-------~~~~~v~~i~~~~~~~~-~~l~s~~~d-----g~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~ 539 (1092)
.++++ .+..+..|+.|+++.-. ++|+.|+.+ +.+.||....... ..++..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 23333 36667778888765432 467777665 4789998776553 235678888999999999
Q ss_pred CC----CEEEEEecCCCCceeEEEEeCCCCe-----------------EEEEEeeccccCCceEEEEEcCCCCEEEEEeC
Q 001363 540 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 540 dg----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
+- ..|++++. +| |+||.+.... .+..+..+..|++.|..+.|+-.|..|.+.+.
T Consensus 234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 53 34666654 44 9999876311 12333333444599999999999999999999
Q ss_pred CCcEEEEECCC---CceEEEEeCC
Q 001363 599 DHVIKIWDMNK---VQLLTTIDAG 619 (1092)
Q Consensus 599 dg~i~iwd~~~---~~~~~~~~~~ 619 (1092)
||.||+|...- .++...+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 99999997542 3344445444
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-19 Score=171.10 Aligned_cols=256 Identities=13% Similarity=0.176 Sum_probs=190.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC-CcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~ 468 (1092)
-.+|.+-|.++.|.+.|+++|+|+.|++|+|||.+.+ .........+.|.+.|..+.|.+- |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 5579999999999999999999999999999996543 234445568899999999999764 66 899999999999
Q ss_pred EEECCC------C---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE------Eec-------
Q 001363 469 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD------- 526 (1092)
Q Consensus 469 vwd~~~------~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~------- 526 (1092)
||.-.. + ....++......|+.++|.|..-|-.+++++.||.+|||+....-... ++.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 123556677889999999999999999999999999999865432221 111
Q ss_pred CCCCceEEEEEccC---CCEEEEEecCC-CCceeEEEEeCCCC--e--EEEEEeeccccCCceEEEEEcCCC----CEEE
Q 001363 527 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEG--A--IKRTYQGLQLQHNSVSVVHFDTAK----DQIL 594 (1092)
Q Consensus 527 ~~~~~i~~~~~s~d---g~~l~~~~~~~-~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~ 594 (1092)
.+..+..|+.|+|. ..++++++.+. ...+.++||....+ + .+..+.+|. .+|+.++|.|+- ..++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23446788899874 34677666431 11234666655433 2 344566666 999999999973 5688
Q ss_pred EEeCCCcEEEEECCCCc-----------------eEEEEe-CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 595 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 595 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
+++.|| |+||.+.... .+..+. ..+|...|..+.|+-.|..|++.+.||.+++|...-
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 899999 9999987311 112222 334556799999999999999999999999998653
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=192.21 Aligned_cols=287 Identities=18% Similarity=0.222 Sum_probs=206.0
Q ss_pred CCCceEEEEEcCCCcEEEEecCCCCee-EEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEE
Q 001363 344 PVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 422 (1092)
Q Consensus 344 pdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~i 422 (1092)
|+.+.+||.+..||.|.++|...-.-. ....+ . ....|...|..++|-|....|++++.|.++++
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l------------k--~~~aH~nAifDl~wapge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQL------------K--KPLAHKNAIFDLKWAPGESLLVSASGDSTIRP 126 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhh------------c--ccccccceeEeeccCCCceeEEEccCCceeee
Confidence 344568999999999999998764322 11111 1 14569999999999997778899999999999
Q ss_pred EEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc--------------------------
Q 001363 423 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-------------------------- 476 (1092)
Q Consensus 423 wd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-------------------------- 476 (1092)
||+++++..... .+.||.+.|.+++|.|+... .+++|+.||.|.|||+.-..
T Consensus 127 Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 127 WDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 999998876643 46799999999999999886 89999999999999975321
Q ss_pred -eeEEEecCCcCeEE---EeecccCCccEEEEEec-CCeEEEEEcCCCCceEE--------ecCC---CCceEEEEEccC
Q 001363 477 -RTYSFEGHGAPVYS---LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMAYSAN 540 (1092)
Q Consensus 477 -~~~~~~~~~~~v~~---i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~--------~~~~---~~~i~~~~~s~d 540 (1092)
.+.....+...|.+ +.+ ..|...|++++. |+.|+|||++....... +..+ ...+.++.....
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~--fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVL--FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred ccccccccccCceeeeeEEEE--EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 01112234444433 222 235678898887 99999999987654332 2222 236778888888
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 541 GRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
|.+|++... |+.|+.|++.+-. .+..+.++......+ .-..+|++.++++|+.|...++|.+.+.+.-..+.
T Consensus 283 Gt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l- 356 (720)
T KOG0321|consen 283 GTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL- 356 (720)
T ss_pred CCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhh-
Confidence 888877765 6679999987543 344455544111122 23478999999999999999999998765433222
Q ss_pred CCCCCCCceEEEccC-CCEEEEEeCCCeEEEEECCCC
Q 001363 619 GGGLPENPRICFNKN-GTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.++...|.+++|.|. -.-++++++|..+++|++..+
T Consensus 357 ~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 357 LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 133456899999873 334667799999999999654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-19 Score=172.48 Aligned_cols=299 Identities=15% Similarity=0.205 Sum_probs=207.2
Q ss_pred ccccEEEEEEec----CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001363 733 KANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808 (1092)
Q Consensus 733 ~~~~i~~l~~s~----~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~ 808 (1092)
|..+|..++|.+ +...+++......+.+|+.+... +.++..... ...+......+
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~-D~d~~Esfytc 95 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYA-DEDHDESFYTC 95 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeecc-CCCCCcceEEE
Confidence 677888888874 33345555556688888876431 111222222 22466677778
Q ss_pred EEecCC----CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001363 809 ALSKND----AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 809 ~~s~dg----~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
+|+-|- -++|.++ -|.|+|.|..++++...+.+|...|..+.+.|++.++|++++.|..|++|++++..++..+-
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 887653 3566665 59999999999999999999999999999999878899999999999999999999998874
Q ss_pred ---cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-------------eeeeecCCCCcC-------CCCCce
Q 001363 884 ---GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-------------CRSLQTPDGVMT-------LAPSET 940 (1092)
Q Consensus 884 ---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~-------------~~~~~~~~~~~~-------~~~~v~ 940 (1092)
||.+.|.++.|+++|.+++|+|.|.+|++|++...+... ...+.++..+.+ +...|.
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 699999999999999999999999999999998533111 001111111111 001222
Q ss_pred EEEEccCCCEEEE-EeCCcEEEEEc-CCceeeeee------------ccCCCCCEEEEEEe--cCCCEEEEEECCCcEEE
Q 001363 941 HIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 941 ~l~~s~dg~~la~-~~d~~i~lwd~-~~~~~~~~~------------~~~h~~~v~~l~fs--~dg~~l~t~~~Dg~i~v 1004 (1092)
++.|- |.++++ +.++.|..|.. +-.+.+... +.-....|+-+.|+ |-+++||.|...|.|.+
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 22222 577777 78899999987 212221111 11125566666655 55789999999999999
Q ss_pred EEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1005 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1005 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
||++..+... .. .+.....+..|+ ..+|+. |+..|+..++|++|.-||..
T Consensus 334 wdL~~~ep~~-~t---tl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPK-CT---TLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCcc-Cc---eEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999876641 11 111111234455 456776 58999999999999999863
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-19 Score=173.48 Aligned_cols=298 Identities=15% Similarity=0.260 Sum_probs=214.4
Q ss_pred eecccCCCCceEEeecC----CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 328 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~sp----dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
+.+.+|+.+|..++|++ +...++|+.+. ..+.+|+.....-+.. ++.-.-..|......++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCS 96 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEE
Confidence 45668888999999984 33335666554 6788998765442221 11111234778888899
Q ss_pred ECCCC----CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 404 WSPDG----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 404 ~spdg----~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
|+-|. -+||+|+.-|.|+|.|+.+++... .+.+|.+.|+.+.|.|+..+ ++++++.|.+|++|++++..++.
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~ 172 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA 172 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence 98753 478999999999999999987766 67899999999999999877 89999999999999999999998
Q ss_pred EE---ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE------Ee----------------------cCC
Q 001363 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DY----------------------DAP 528 (1092)
Q Consensus 480 ~~---~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~----------------------~~~ 528 (1092)
.| .||.+.|.++.|+. +|.+|++++.|..+++|++...+-.. .+ ..|
T Consensus 173 VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 87 56999999999965 66799999999999999997432111 00 111
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeC-CCCeEE----------EEEeeccccCCceEEE--EEcCCCCEEEE
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIK----------RTYQGLQLQHNSVSVV--HFDTAKDQILA 595 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~-~~~~~~----------~~~~~~~~~~~~v~~~--~~~~~~~~l~~ 595 (1092)
...|.|+.|- |.++++-+- ++.|..|.+ +-++.+ ..+.........+.-+ +|.|-++.|+.
T Consensus 251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 1122222222 456666543 557999987 222211 1111111112444444 55667889999
Q ss_pred EeCCCcEEEEECCCCce--EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 596 AGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 596 ~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
|...|.|++||++.... ..++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999987655 3444444455678999999999999999999999999864
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-20 Score=185.68 Aligned_cols=252 Identities=15% Similarity=0.182 Sum_probs=193.2
Q ss_pred EEEEEECC-------CCCEEEEEeCCCEEEEEEccCCCcccceEEE------------------cccccceeEEEEecCC
Q 001363 399 VNRVVWSP-------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAPC 453 (1092)
Q Consensus 399 V~~l~~sp-------dg~~las~~~d~~i~iwd~~~~~~~~~~~~~------------------~~h~~~v~~~~~s~d~ 453 (1092)
..|++|.. -|+|+|.|+.|..|.|||+.-...+.+...| .+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 34566643 3689999999999999998643322222222 2799999999999887
Q ss_pred CcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceE
Q 001363 454 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCT 533 (1092)
Q Consensus 454 ~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 533 (1092)
+. +|+|||.|.+|++||+.+|++..++..|...|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|.
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 77 8999999999999999999999999999999999999986 457999999999999999985433322222345788
Q ss_pred EEEEccCCCEEEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001363 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 611 (1092)
.++|.|.....+.++. .+|+|+-+|++.. +++.++..|. ++|.++++++... .+++++.|+.|.+|++..-.
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 8999998877666664 2788999999865 8899999988 8999999998754 56779999999999987644
Q ss_pred eEEEEeCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCceee
Q 001363 612 LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
........-......|.++.|+- -.++.|+..+.++|||+.+...+.
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 42222211112234566777754 467788888899999998775443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-17 Score=188.09 Aligned_cols=371 Identities=23% Similarity=0.348 Sum_probs=275.1
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC-eeEEeeeeeeecccccceeeEeeecCCC-CcEEEEEE-C
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S 405 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~-s 405 (1092)
.+.+|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 5678899999999999998 67888889999999999886 3322 23322 46777777 8
Q ss_pred CCCC-EEEEEeC-CCEEEEEEccC-CCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-CCcEEEEECCCCceeEEE
Q 001363 406 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 406 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~ 481 (1092)
+++. +++..+. |+.+.+|+... ... ...+..|...|..++|+|++. .+++++. |+.+++|+..++..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKL---IRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeE---EEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 432 336778999999999999999 6777775 999999999999999999
Q ss_pred ecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+|...|.++++. +++. ++++++.|+.|++||........ .+..+.... ...|++++..+++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 9999999999997 4555 55666999999999888666655 466666654 3389999988886655 667999
Q ss_pred EeCCCCeE-EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 560 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 560 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++
T Consensus 268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344 (466)
T ss_pred eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEE
Confidence 99987665 44444444 889999999988899888888999999998887776665112222578888843435666
Q ss_pred EE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee-eccccccceeccc
Q 001363 639 VI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS-VEAENKSEVEKPL 716 (1092)
Q Consensus 639 ~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-~~~d~~i~lw~~~ 716 (1092)
.+ ..|+.+.+|+............... +..+.+. ++ ..... +..++.+.+|+..
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 345 SGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred EeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEecc
Confidence 65 6789999999988762222222211 4555554 22 22333 5778899999976
Q ss_pred cccCccccccccCCcccc-ccEEEEEEecCCcEEEEeecCCeeEEEeecC
Q 001363 717 FARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~ 765 (1092)
......... .. ..+....+++++..++.++.++.+++|+...
T Consensus 401 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 401 TGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 433222111 11 6788899999999999988899999998643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-16 Score=184.10 Aligned_cols=372 Identities=23% Similarity=0.395 Sum_probs=285.3
Q ss_pred EcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEecCCc-CeEEEeecccCCcc-EEEEEec-CCeEE
Q 001363 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKIK 512 (1092)
Q Consensus 437 ~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~-~v~~i~~~~~~~~~-~l~s~~~-dg~i~ 512 (1092)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. +++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 557999999999999999 78888899999999998887 6777776443 77777775 55555 5555444 99999
Q ss_pred EEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001363 513 AWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 513 vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
+|+... ......+..+...+..++|+|+++.+++++. .++.+.+|+...+..+..+.+|. ..+.+++|+|++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 211 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGG 211 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcc
Confidence 999998 6777788889999999999999998777753 36779999999988888888866 8999999999998
Q ss_pred -EEEEEeCCCcEEEEECCCCceEE-EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce-eeecccccCcee
Q 001363 592 -QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNLR 668 (1092)
Q Consensus 592 -~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~ 668 (1092)
.+++++.|+.+++||...+.... .+..+... . ...|++++.++++++.|+.+++|+...... +...
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------- 280 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-------- 280 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------
Confidence 44555899999999988777777 46555332 2 228999998999999999999999886532 1110
Q ss_pred eeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcE
Q 001363 669 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 748 (1092)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 748 (1092)
..|...+.++.+.|++..
T Consensus 281 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 281 --------------------------------------------------------------SGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred --------------------------------------------------------------ecCCccEEEEEECCCCCE
Confidence 114567788888888888
Q ss_pred EEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE--eCCeEE
Q 001363 749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVIS 826 (1092)
Q Consensus 749 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~--sdg~i~ 826 (1092)
+++++.++.+.+|+...... ..... ...|...+..+.+.+++..++.+ .++.+.
T Consensus 299 ~~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 299 LASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred EEEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 88888887788886543321 11111 11255678888884333555555 368899
Q ss_pred EEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE-EeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001363 827 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 827 iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 905 (1092)
+|+............. ..+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++
T Consensus 355 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
T COG2319 355 LWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431 (466)
T ss_pred eeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEec
Confidence 9999887733333322 2288999998 7 55555 88999999999999887777765547899999999999999999
Q ss_pred CCCcEEEEEcCC
Q 001363 906 GDAQIFVWDVDG 917 (1092)
Q Consensus 906 ~Dg~I~iwd~~~ 917 (1092)
.++.+++|+...
T Consensus 432 ~~~~~~~~~~~~ 443 (466)
T COG2319 432 SDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEeccC
Confidence 999999999987
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-20 Score=211.96 Aligned_cols=296 Identities=16% Similarity=0.263 Sum_probs=226.5
Q ss_pred ceEEeecCCCceEEEEEcC----------CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 337 PMSMDFHPVQHTLLLVGTN----------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~----------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
-..+||||++..++|+|.. +.++.||.+.-..... | ++..---.-......++|++
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~-------d-------lk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS-------D-------LKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc-------c-------ccccccccccccceeeeecc
Confidence 3468999999767887743 2344455443211110 0 00000011245678899999
Q ss_pred CCCE----EEEEeCCCEEEEEEccC---CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 407 DGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 407 dg~~----las~~~d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
.|.. ||.|..||.|.+||... +.....+.+...|++.|..+.|++.... +|++|+.||.|.|||+..-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 7766 88889999999999876 4444445567789999999999998876 89999999999999998866555
Q ss_pred EEe--cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceEEEEEccCCCE-EEEEecCCCCc
Q 001363 480 SFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRR-LFSCGTSKEGE 554 (1092)
Q Consensus 480 ~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~dg~~-l~~~~~~~~~~ 554 (1092)
... .....|.+++|+.. ..++|++++.+|++.|||++..+.+..+..+.. .+..++|+|++.. +++++ +.+..
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As-~dd~~ 231 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS-GDDSA 231 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec-CCCCC
Confidence 442 24567999999743 557899999999999999999988887766655 4778999998764 44444 45668
Q ss_pred eeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 555 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 555 ~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
-.|.+||++. ...++.+++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+ ..+..+.|+|
T Consensus 232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~p 306 (1049)
T KOG0307|consen 232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCP 306 (1049)
T ss_pred ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecC
Confidence 8999999874 45677788888 899999999987 788899999999999999999999998643 4688999999
Q ss_pred CCC-EEEEEeCCCeEEEEECCCC
Q 001363 633 NGT-LLAVIANENRIKILETPES 654 (1092)
Q Consensus 633 ~~~-~l~~~~~dg~i~iw~~~~~ 654 (1092)
... .+++++-||.|.|+.+...
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCcchhhhheeccceeeeeeecC
Confidence 554 8899999999999998765
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=180.33 Aligned_cols=293 Identities=16% Similarity=0.203 Sum_probs=214.7
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE--eCCCeEEEEECCCCceeeecccccCceeeee
Q 001363 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1092)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 671 (1092)
..++....+++||.........+..+...+.+.+++|+.... |+++ +.|..+++|.-.....
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~--------------- 69 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP--------------- 69 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC---------------
Confidence 334444579999998877776666666666789999987654 4443 4577788886442200
Q ss_pred ecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEE
Q 001363 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1092)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 751 (1092)
+|-+-... ....-.|++......++++
T Consensus 70 -------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~s 96 (673)
T KOG4378|consen 70 -------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEIS 96 (673)
T ss_pred -------------------------------------ccceeecc----------------ccchHHHHhhhhcceeeec
Confidence 00000000 1112223344444578999
Q ss_pred eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEc
Q 001363 752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 830 (1092)
Q Consensus 752 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~ 830 (1092)
++..+.++|||++... .-..+. +|...|+++.+.-...|||++++ |.|.|..+
T Consensus 97 gG~~~~Vkiwdl~~kl------------------------~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAKL------------------------IHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred cCcCceeeehhhHHHH------------------------Hhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 9999999999986421 111122 48899999999999999999995 88999999
Q ss_pred CCceeeEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee-ccccCCeEEEEEcCCC-CEEEEEeCC
Q 001363 831 MTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDAL-NILVSSGGD 907 (1092)
Q Consensus 831 ~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg-~~l~s~s~D 907 (1092)
.++.....|....+ .|+-+.|+|....+|.+++.+|.|.+||+....+...+ +.|..+...++|+|.. .+|++.|.|
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 99988888876544 56689999966678888999999999999987766554 5699999999999954 778999999
Q ss_pred CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCCCEEEEEE
Q 001363 908 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATF 986 (1092)
Q Consensus 908 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~f 986 (1092)
+.|.+||........ ++.. ..+..+++|+++|.+|++| ..|.|..||++..+..-..+..|...|++++|
T Consensus 231 kki~~yD~~s~~s~~--~l~y-------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 231 KKINIYDIRSQASTD--RLTY-------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ceEEEeecccccccc--eeee-------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 999999998743222 1111 1257899999999999995 77999999998766555557789999999999
Q ss_pred ecCC
Q 001363 987 SCDC 990 (1092)
Q Consensus 987 s~dg 990 (1092)
-+..
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 8765
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-19 Score=179.39 Aligned_cols=306 Identities=13% Similarity=0.118 Sum_probs=222.4
Q ss_pred CceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccc
Q 001363 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 733 (1092)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~ 733 (1092)
-......+.+...|++++|.|. ...+++++|+.-|.|-+|++...++.....+.+ ..|
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f--~~h 233 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF--TPH 233 (498)
T ss_pred ceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEe--ccC
Confidence 3444556667788999999874 345788999999999999996444443333333 348
Q ss_pred cccEEEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 734 ANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 734 ~~~i~~l~~s~~-g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..+|.++.|+|. -..+++.+.||+|++-|+...... . ++..+ .....+..+.|+.
T Consensus 234 s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~---------v~s~~----~d~~~fs~~d~~~ 289 (498)
T KOG4328|consen 234 SGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------E---------VLSLD----TDNIWFSSLDFSA 289 (498)
T ss_pred CccccceEecCCChhheeeeccCceeeeeeecchhhH-----------H---------HhhcC----ccceeeeeccccC
Confidence 999999999995 456888999999999887654210 0 11100 1345667788888
Q ss_pred CCCEEEEEeC-CeEEEEEcCCcee-eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee----eEeecccc
Q 001363 813 NDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHS 886 (1092)
Q Consensus 813 dg~~l~~~sd-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~----~~~l~~h~ 886 (1092)
+...++.+.+ |.+.+||..+... ...+.-|...|+.++++|....+|||++.|++++|||++.-.. .-....|.
T Consensus 290 e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr 369 (498)
T KOG4328|consen 290 ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR 369 (498)
T ss_pred CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence 8888888875 8999999987654 5666778889999999998888999999999999999976322 23334599
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC---CCceeeeeeeecC--CCCcCCCCCceEEEEccCCCEEEEE-eCCcEE
Q 001363 887 KRVTGLVFSDALNILVSSGGDAQIFVWDVD---GWGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 960 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~---~~~~~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~ 960 (1092)
..|.++.|||++..|+|.+.|..|+|||.. ..-... ..+... .+.. -.....+|.||..+++++ .-..|-
T Consensus 370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~-~~I~Hn~~t~Rw---lT~fKA~W~P~~~li~vg~~~r~ID 445 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL-GTIPHNNRTGRW---LTPFKAAWDPDYNLIVVGRYPRPID 445 (498)
T ss_pred ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc-ceeeccCccccc---ccchhheeCCCccEEEEeccCccee
Confidence 999999999999889999999999999985 211111 111111 1111 135667999999999996 567799
Q ss_pred EEEcCCceeeeeeccCCCCCEEE-EEEecCCCEEEEEE-CCCcEEEEEcCC
Q 001363 961 IYEAEELTCLKQWFPISSVPISQ-ATFSCDCRMVFTSF-VDGTLSIHEASN 1009 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l~t~~-~Dg~i~vwd~~~ 1009 (1092)
|+|...++.+..+.......|.+ ..|.|-+..+++|+ ..|.|+||--+.
T Consensus 446 v~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 446 VFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred EEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 99999999888765555555655 46888777455544 567888886543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=178.32 Aligned_cols=293 Identities=14% Similarity=0.171 Sum_probs=220.1
Q ss_pred EEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE--EeCCCEEEEEEccC
Q 001363 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV--AYSKHIVQLYAYHG 427 (1092)
Q Consensus 350 lasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las--~~~d~~i~iwd~~~ 427 (1092)
+|+++ .+++|||+..-+....+. -......+.++.|+.... |++ .+.|..|++|.-..
T Consensus 7 ~aS~g--d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g 66 (673)
T KOG4378|consen 7 VASTG--DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDG 66 (673)
T ss_pred eeccC--CceEEeecccccCccccc-----------------cCCCCCcceeeeccccce-EEEeecCCceeEEEecccC
Confidence 44443 579999997654432210 001123488999998664 444 45678899997654
Q ss_pred CCc-ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe
Q 001363 428 GSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506 (1092)
Q Consensus 428 ~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~ 506 (1092)
... +.......+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.++. ...+|++++
T Consensus 67 ~~~~Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs 140 (673)
T KOG4378|consen 67 KTPEVPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVS 140 (673)
T ss_pred CCCccceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEec
Confidence 311 1111122222 233333333334 899999999999999998888889999999999999865 447999999
Q ss_pred cCCeEEEEEcCCCCceEEecCC-CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001363 507 VDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1092)
Q Consensus 507 ~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1092)
..|.|.+..+.++.....+... +..+.-+.|+|..+.+++...+ ++.|.+||......+..+.. .|..+...++
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gic 215 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGIC 215 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcce
Confidence 9999999999988877777766 4456789999998887765542 77899999988777655433 2358899999
Q ss_pred EcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-ceeeecccc
Q 001363 586 FDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVL 663 (1092)
Q Consensus 586 ~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~ 663 (1092)
|+|.+. .+++.+.|..|.+||....+....+.... +...++|+++|.+|++|...|.|..||++.. .++..+..|
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred ecCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence 999765 45668999999999999887777776543 4689999999999999999999999999854 678889999
Q ss_pred cCceeeeeecCCC
Q 001363 664 SDNLRKLSVNPIS 676 (1092)
Q Consensus 664 ~~~v~~~~~~~~~ 676 (1092)
...|++++|.+..
T Consensus 293 ~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 293 DASVTRVAFQPSP 305 (673)
T ss_pred ccceeEEEeeecc
Confidence 9999999998765
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-17 Score=175.64 Aligned_cols=604 Identities=12% Similarity=0.099 Sum_probs=358.1
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC------
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG------ 408 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg------ 408 (1092)
..-.++.|+|.| ++|-|+. ..|.|-|..+-+.+.. +.-|...|+.+.|.|-.
T Consensus 16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence 357789999999 6888875 6789999988887765 55699999999998731
Q ss_pred ------CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec---CCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 409 ------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 409 ------~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
-+||++...|.|.+||...+..+. .+..|..++..++|-+ +++. +|+.-....++.+|+..+|+...
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence 267888888999999999886555 5677888999999865 3434 55556667799999999999998
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC-------ceEEecCCCC----------------------
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-------ARVDYDAPGL---------------------- 530 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~---------------------- 530 (1092)
..........++.+.|-... .+..-+..|.+.+.+.-... ..+....+..
T Consensus 150 k~~ys~~iLs~f~~DPfd~r-h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPFDSR-HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ccccCCcceeeeeeCCCCcc-eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 87766667777887766443 44444455555555432111 1111111100
Q ss_pred ---ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC--CEEEEEeCCCcEEEE
Q 001363 531 ---GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIW 605 (1092)
Q Consensus 531 ---~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iw 605 (1092)
-...++|+|.-+.++.... ...+.++|++-..++....-.. +.+.-+.+-|++ ..+++.-.||.+.+|
T Consensus 229 fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0123566776554444433 2339999999888887777655 666667777764 568999999999999
Q ss_pred ECCCC----------------ceEEEEeCCCCCCCCceEEEccC-CCEEEEEeCCCeEEEEECCCCceeeecc-------
Q 001363 606 DMNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG------- 661 (1092)
Q Consensus 606 d~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~------- 661 (1092)
-.+.. .....+..-.. ..+...+..|. ...+++.-.+|...+|.+.+++......
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~-~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEE-FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechh-cccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 76542 11111111111 11222333343 4556666677888889888653221111
Q ss_pred ------------------------cccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001363 662 ------------------------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 662 ------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
+|.....+....|.....-+.... +......--.+++.|...|+|.++|+.+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p----~~n~~~~~~pLvAvGT~sGTV~vvdvst 456 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP----GGNTPAGTVPLVAVGTNSGTVDVVDVST 456 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC----CCCccceeeeeEEeecCCceEEEEEecc
Confidence 112222222222211111000000 0000011124578899999999999876
Q ss_pred ccCccccccccCCccccccEEEEEEecCCcEEEEeecC--CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeec
Q 001363 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 795 (1092)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 795 (1092)
+.......+ |...|.++.|....+.+-.+.+. ..-.+ -.+.+.+-++.+|.......
T Consensus 457 ~~v~~~fsv------ht~~VkgleW~g~sslvSfsys~~n~~sg~---------------vrN~l~vtdLrtGlsk~fR~ 515 (1062)
T KOG1912|consen 457 NAVAASFSV------HTSLVKGLEWLGNSSLVSFSYSHVNSASGG---------------VRNDLVVTDLRTGLSKRFRG 515 (1062)
T ss_pred hhhhhhhcc------cccceeeeeeccceeEEEeeeccccccccc---------------eeeeEEEEEccccccccccc
Confidence 554444433 88999999998887754433321 00000 01234455666666444433
Q ss_pred CCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEc-CC---------------CCCE
Q 001363 796 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNNV 858 (1092)
Q Consensus 796 l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~~ 858 (1092)
+++ ..+.+|+.+..|.-|+|++..- +.-+.+||+++..+++...-.-.-++.++|+ |. ..+.
T Consensus 516 l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~ 594 (1062)
T KOG1912|consen 516 LQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENL 594 (1062)
T ss_pred CCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhce
Confidence 333 5788999999999999999997 6779999998877766554344458888887 31 1123
Q ss_pred EEEEeCCCcEEEEEcCC-------cee-eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001363 859 IAIGMDDSTILIYNARS-------SEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930 (1092)
Q Consensus 859 lasg~~dg~v~iwd~~~-------~~~-~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 930 (1092)
++..+ +..+++.+.- +.. ....+.....+..++| .+..|+.|..+|.+.+||+....... .... .
T Consensus 595 vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~-p 667 (1062)
T KOG1912|consen 595 VVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG--VRDS-P 667 (1062)
T ss_pred eeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC--ccCC-C
Confidence 33333 2333333321 111 1111111223344666 46699999999999999987632111 1111 1
Q ss_pred CCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 931 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 931 ~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
.+. .......+-|.....++-...-+-+||.+....+..+ .+. +..+..+.+......++ ..|.++|+-.+.
T Consensus 668 ~~r---a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~ 741 (1062)
T KOG1912|consen 668 DPR---AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMP 741 (1062)
T ss_pred Cch---hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEEecc
Confidence 111 1233344445433444445566889999887777764 333 33444455544443333 345577776665
Q ss_pred CCce
Q 001363 1009 NLEV 1012 (1092)
Q Consensus 1009 ~~~~ 1012 (1092)
....
T Consensus 742 mks~ 745 (1062)
T KOG1912|consen 742 MKSP 745 (1062)
T ss_pred ccCC
Confidence 5443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-18 Score=167.19 Aligned_cols=409 Identities=11% Similarity=0.111 Sum_probs=260.6
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
-+.|||+|+|+|+++.- .+.|=|.++-+..+.. .--..|..+.|..|... .+.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999776 6888888875443311 12346888999999885 566778899999999999988888
Q ss_pred EecCCcCeEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 481 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
+.....++.+++|+| || ++|.+...|-+|.+|.+.+..... +......+..++|+|||++.+.++.. +-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 988889999999966 55 677788889999999998866544 33344566889999999999988642 22223333
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001363 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
..-.....++.+.... ...+.+.|+|||+.+++ ||.--.-.+..... .-.+..++|+|.++++++
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~---~lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeee---ccceeEEEeccccceEEe
Confidence 3333344455555544 56788999999987765 43221111111111 124788999999999999
Q ss_pred EeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001363 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~ 719 (1092)
|+.|+.+++.+--+-+.+..+-. -. +-.|.+..+-..+..+
T Consensus 228 GsyD~~lrvlnh~tWk~f~eflh-l~--------------------------------------s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFLH-LC--------------------------------------SYHDPTLHLLEKETFS 268 (447)
T ss_pred eccchhhhhhceeeeeehhhhcc-ch--------------------------------------hccCchhhhhhhhhcc
Confidence 99999999977554433322210 00 0001110000000000
Q ss_pred CccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCC
Q 001363 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 799 (1092)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 799 (1092)
. -.-...++.|.|..- ...+|......+. .......+....+.+ +. +
T Consensus 269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE---~~~~pv~~~~lkp~t-------D~--p 315 (447)
T KOG4497|consen 269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIYE---QQMTPVKVHKLKPPT-------DF--P 315 (447)
T ss_pred h------------hhhcccccccCCCcc---------ccCccccchhhhh---hhhcceeeecccCCC-------CC--C
Confidence 0 001122344444321 1111111100000 000000000001111 11 1
Q ss_pred CCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 800 NSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~sd---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
+..-.+.-++||+|..++++-.| +.+.+||++..+....+. ...+|.+..|.| ....|+.......+++|.....
T Consensus 316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence 23456778999999999999986 569999998776654443 556899999999 7778888877788999988765
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCc
Q 001363 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 909 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~ 909 (1092)
.++..- +..-.|..+.|.-+|..++-.+.|.-
T Consensus 394 ~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 394 RVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 555433 33467999999999999999998873
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=170.93 Aligned_cols=264 Identities=16% Similarity=0.208 Sum_probs=185.8
Q ss_pred ecccCCCCceEEeecCCCc-eEEEEEcCCCcEEEEecCCCC-eeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 329 TLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
...+|.+.+..+.-++-|+ .+.|+=+..|.|.|||+..-- .+..-.+.+-+ ...+++ ..+.+|...=..++|||
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~--s~~~Pl--~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD--SEFRPL--FTFNGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc--cccCce--EEecccCccceeeeccc
Confidence 3456777888888887653 366777778999999985321 11110111111 001111 23778999999999999
Q ss_pred C-CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC---ceeEEEe
Q 001363 407 D-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFE 482 (1092)
Q Consensus 407 d-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~ 482 (1092)
- -..|++|.-.+.|++|...+|.-..-...+.+|+..|-.++|||..+. .|+|||-||+|+|||++.+ .++. .+
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~-~k 299 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVS-TK 299 (440)
T ss_pred ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeE-ee
Confidence 2 234778877778999999987644333357789999999999998877 8999999999999999988 3333 38
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.|...|+.+.|+... .+|++|+.||+++|||++.. +++..++.|..+|+++.|+|...-.+.++. .+.+|.+
T Consensus 300 Ah~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~Qiti 374 (440)
T KOG0302|consen 300 AHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITI 374 (440)
T ss_pred ccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEE
Confidence 899999999996543 49999999999999999864 456788999999999999996654444332 2778999
Q ss_pred EeCCCCeE----------------EEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEE
Q 001363 560 WNESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIW 605 (1092)
Q Consensus 560 wd~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iw 605 (1092)
||+..-.- .+.+-.|. ....+..+.|++.- .++++.+.|| +.||
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 99863211 01112222 12467778888874 4566666776 4444
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=169.72 Aligned_cols=250 Identities=15% Similarity=0.171 Sum_probs=185.0
Q ss_pred CCCCCeeEEEEecCCCEEEEE--eC-CeEEEEEcCC----------------ceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001363 800 NSQEAVPCFALSKNDAYLFSA--SG-GVISLYIVMT----------------FKTILTIMPPSPTATSLAFNPHDNNVIA 860 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~--sd-g~i~iwd~~~----------------~~~~~~~~~~~~~i~~l~~s~~d~~~la 860 (1092)
+|.+.+..+..++-++-.+++ ++ |.|.||++.. .+.+.++.+|...-.+++|||...-.|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 477778888777766444444 44 9999999742 3456778899999999999995555688
Q ss_pred EEeCCCcEEEEEcCCcee---eEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001363 861 IGMDDSTILIYNARSSEV---ISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~---~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
+|.--+.|++|...+|.- ...+.+|+..|..|+|||. ...|||||.||+|+|||+..+........ ..|..
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~s-- 303 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHNS-- 303 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccCC--
Confidence 888889999999988752 3556789999999999995 57899999999999999998755443333 23332
Q ss_pred CCceEEEEccCCCEEEEE-eCCcEEEEEcCC---ceeeeeeccCCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCc
Q 001363 937 PSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 937 ~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~---~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
.|..+.|+.+-.+||+| .||+++|||+++ ++.+.. +.-|..+|+++.|+|. ...|+++|.|..|.+||+....
T Consensus 304 -DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~-fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 304 -DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT-FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred -ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee-EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 69999999999999984 779999999974 445555 5679999999999984 5678888899999999987543
Q ss_pred e---EEee--ccccccCCCC---ccccccceEEEECCCCCCEEEEEeCCCcEE
Q 001363 1012 V---QCRI--LSTAYLRPTT---SCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus 1012 ~---~~~~--~~~~~~~~~~---~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~ 1056 (1092)
- .... .....+|++. |.+.-..-.+.||++-+.++++.+.||.-.
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNV 434 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeE
Confidence 2 0000 0011233321 222212225679999899999999999633
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-18 Score=170.01 Aligned_cols=237 Identities=16% Similarity=0.272 Sum_probs=187.6
Q ss_pred eecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCc----ccceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001363 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
+..||+++|..++|+| +...||+||.|.+|.||.+-.+.. ......|.+|...|--++|+|.... .|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4789999999999999 778999999999999999875533 2345578999999999999998877 789999999
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEccCCCEE
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL 544 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l 544 (1092)
+|.+||+.+|+.+.++. |.+.|.+++|+ .||.+|++.+.|+.|||||.++++....-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 99999999995 4788999999999999999999988887766654 455677888998 7
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce-EEEEeCCCCC
Q 001363 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL-LTTIDAGGGL 622 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~-~~~~~~~~~~ 622 (1092)
++.+.++-.+.++-+||..+-+.-..+.... ..+.|.--.+.++.+.++.++ .|+.||.|.+....+ +.-+..-...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 7777777779999999987654433332222 135677778899988886654 899999999987653 3333322223
Q ss_pred CCCceEEEccC
Q 001363 623 PENPRICFNKN 633 (1092)
Q Consensus 623 ~~v~~v~~s~~ 633 (1092)
..-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 34466777764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=162.96 Aligned_cols=289 Identities=14% Similarity=0.192 Sum_probs=206.7
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC-------CCCCE
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-------PDGSL 410 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s-------pdg~~ 410 (1092)
..+.|||||.. +.+-+.|..+.+|++...-.-.....+ ........+-......|...+|- |+..+
T Consensus 53 kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 53 KGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred ccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence 35689999984 667788999999998532111100000 00000001111134566777765 67889
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEccccc---ceeEEEEecCCCcEEEEEEeCCCcEEEEEC-CCCcee--EEE---
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF--- 481 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~~~~~~--~~~--- 481 (1092)
+|+.+.+.-|++||.-+|+...... .-.|.. ...+++|+|||. .|++ +....|+++|+ +.|+.- +..
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred eeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhhhc
Confidence 9999999999999999998654322 223444 345899999999 4654 55789999998 455432 211
Q ss_pred --ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 482 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 482 --~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+..+.+.+++|+|. +...++.|+...++-++.....++...+.+|++.|+.+.|.+||+.|++++. .+..|..
T Consensus 202 ~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl~ 277 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKILC 277 (406)
T ss_pred ccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEEE
Confidence 233677888899886 4468999999999999999999999999999999999999999999999875 3556999
Q ss_pred EeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEE
Q 001363 560 WNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1092)
Q Consensus 560 wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1092)
||++. +..+..+..|....+.-......|++++|++|+.||.|++||+.+ |..+..+..+. ..++.++++|--.++
T Consensus 278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mpil 355 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMPIL 355 (406)
T ss_pred EeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCccccee
Confidence 99974 556666666662122223345678899999999999999999998 66566665443 358899999998888
Q ss_pred EEEeCC
Q 001363 638 AVIANE 643 (1092)
Q Consensus 638 ~~~~~d 643 (1092)
|+++..
T Consensus 356 atssGq 361 (406)
T KOG2919|consen 356 ATSSGQ 361 (406)
T ss_pred eeccCc
Confidence 887764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-17 Score=165.05 Aligned_cols=300 Identities=14% Similarity=0.187 Sum_probs=213.8
Q ss_pred cccEEEEEEecCCc-EEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 734 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..++..+.|.+++. .+++++.|..|++|.+........+ ......-.+. .|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence 45788899988877 8999999999999998765321110 0112222333 3999999999999
Q ss_pred CCCEEEEEeC-CeEEEEEcC--------C--------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001363 813 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 813 dg~~l~~~sd-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
+|.+||+|+| |.+.+|-.. + +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 9999999985 889999765 2 344567888999999999999 999999999999999999999
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee---eecCCCCcC------------CCCCce
Q 001363 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMT------------LAPSET 940 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~ 940 (1092)
|+....+.+|...|..++|.|-++++++-+.|...+++.+.........- +....+... ...-..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777665432211100 000000000 002356
Q ss_pred EEEEccCCCEEEEE-----eCC-----cEEEEEcCCceeeeeeccCCCCCEEEEEEec--------CC---------CEE
Q 001363 941 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC---------RMV 993 (1092)
Q Consensus 941 ~l~~s~dg~~la~~-----~d~-----~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg---------~~l 993 (1092)
.++|+|||.+|++. ..+ ..++|+-...+.....+++-..++..+.|+| +. +++
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 78999999999982 222 3456654433322222444466666777766 11 233
Q ss_pred EEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 994 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 994 ~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+.......|+|||.++...++.....-| ..+. .++|++ |+..++..+.||-..+--+.
T Consensus 315 faiAt~~svyvydtq~~~P~~~v~nihy-------~~iT--Diaws~-dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 315 FAIATKNSVYVYDTQTLEPLAVVDNIHY-------SAIT--DIAWSD-DGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred EEEeecceEEEeccccccceEEEeeeee-------eeec--ceeecC-CCcEEEEeccCCceEEEEEc
Confidence 3333456899999999888877663332 2333 788998 68999999999977665553
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=162.75 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=150.0
Q ss_pred eeEEEEecCCCEEEEEeCCeEEEEEc-CCceeeE---Ee----cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 805 VPCFALSKNDAYLFSASGGVISLYIV-MTFKTIL---TI----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~sdg~i~iwd~-~~~~~~~---~~----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
..+++|+|||..|..|....|+++|+ ..|+.-. ++ .+..+-+.+++|+|.+...+|+|+....+-||.-..+
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 45899999999999999999999999 4443221 11 1235678999999988889999999999999999999
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-
Q 001363 877 EVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 954 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~- 954 (1092)
.++..+-+|.+.|+.+.|.+||+.|.+|++ |-.|..||+.... .++-.+..|......-......|+|++|++|
T Consensus 241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccC
Confidence 999999999999999999999999999885 6679999998633 2333333333211122345558999999996
Q ss_pred eCCcEEEEEcCC-ceeeeeeccCCCCCEEEEEEecCCCEEEEEECC
Q 001363 955 HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 955 ~d~~i~lwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D 999 (1092)
.||.|++||+.+ |..+.. ...|+..+..+++.|-=.+++|++..
T Consensus 317 tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 317 TDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence 899999999987 665554 55689999999999987778877654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-16 Score=164.27 Aligned_cols=498 Identities=14% Similarity=0.120 Sum_probs=298.0
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEccccccee-EEEEe-----cCCCcEEEEEEeCCCcE
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFS-----APCKQISVITCGDDKTI 467 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s-----~d~~~l~l~s~~~d~~i 467 (1092)
.|...|.|+.|+.....+.+++++..+.-||+.+.+. ... .+ ...-|. .+..- ..+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 3677788999998887777776665555556554321 111 11 111111 11110 01111157888889999
Q ss_pred EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
.+-+ +.++.-..+..|.+.+.+-.|++ ||.-|++++.||.|++|.- ++-...++.....+|.|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 88888889999999999999955 6678999999999999963 333333455566789999999999888877
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
. .+.+++=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..+|||... ..+..-..|. .+|++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~e--y~ITS 232 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEE--YAITS 232 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeecccC-cccccCChhc--cceee
Confidence 5 3347777777676677777877 9999999999999999999999999999754 4444444443 46999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++|+|+ +.+++++.+ ++++ .
T Consensus 233 va~npd-~~~~v~S~n-t~R~---~------------------------------------------------------- 252 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSYN-TARF---S------------------------------------------------------- 252 (737)
T ss_pred eeeccc-cceeeeeee-eeee---c-------------------------------------------------------
Confidence 999999 667766653 3331 0
Q ss_pred cccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee-cCCCcCcCcccccccCCccccCC
Q 001363 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW-PRNDLTLSTEATTKVPPRLYQPR 786 (1092)
Q Consensus 708 ~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~-~~~~~~~~~~~~~~~~~~~~~~~ 786 (1092)
....+.|..++||+||..++++...|.+.+=-. +..
T Consensus 253 -----------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~-------------------- 289 (737)
T KOG1524|consen 253 -----------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ-------------------- 289 (737)
T ss_pred -----------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhh--------------------
Confidence 013456788899999999988888887654110 000
Q ss_pred CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001363 787 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 787 ~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
+ + -+.+=++. ....|.+-|+.++.+ ..-.....+...+++- + +|+++. .
T Consensus 290 ---------l--------~-------~~n~~~t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~Y--~-hLvvaT-s 339 (737)
T KOG1524|consen 290 ---------L--------V-------SGNLKATSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLGY--G-HLVVAT-S 339 (737)
T ss_pred ---------h--------h-------hccceeEeeccceEEeehhhhhHH--HHhhCccceeeeeece--e-EEEEEe-c
Confidence 0 0 00111111 234566667665543 2222445666666654 3 333333 3
Q ss_pred CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEc
Q 001363 866 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 945 (1092)
Q Consensus 866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 945 (1092)
..|++|.-........+.+....+.-+.-+ ...+++ ....+|.++..+...... ..+++... .....=..|
T Consensus 340 ~qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtls 410 (737)
T KOG1524|consen 340 LQVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLS 410 (737)
T ss_pred cEEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeee
Confidence 468888766554444444444333222211 112222 233456666665422111 11111111 011112233
Q ss_pred cCCCEEEE--EeC-CcEEEEEc-CCceeeeeec-cCCCCCEEEEEEe----cCCCEEEEEECCCcEEEEEcCCCceEEee
Q 001363 946 KDQTRFLL--VHE-THLAIYEA-EELTCLKQWF-PISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 946 ~dg~~la~--~~d-~~i~lwd~-~~~~~~~~~~-~~h~~~v~~l~fs----~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
-....|+. ..| ..+.+||. .+|+....-. -.|...|..++.. ++++.++.-...+.+.|=.+.+.....++
T Consensus 411 LandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I 490 (737)
T KOG1524|consen 411 LANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEI 490 (737)
T ss_pred cccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhh
Confidence 33444555 233 45889998 6666543211 2345556555553 35567777766677776665543332222
Q ss_pred ccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1017 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
.-... ....++|+ |...+++|-.|+.+.+|=.+...
T Consensus 491 ~KiGT----------mVhtLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 491 YKIGT----------MVHTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhhhh----------hhhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 21111 12346677 56789999999999999987644
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-16 Score=170.05 Aligned_cols=563 Identities=15% Similarity=0.157 Sum_probs=327.8
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC----------CCcEEEEEEeCCC
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDK 465 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d----------~~~l~l~s~~~d~ 465 (1092)
...-.++.|+|.| +||.|+.. .|.+-|..+-+.++ .+.-|...|+.+.|.|- ...++++++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446778899876 77777665 48888988765555 67789999999999763 2456889999999
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCc--cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCC
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGR 542 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~ 542 (1092)
.|.+||...+..+..+..|..++..++|.+..+. ..|+......++.+|+..+++....+........++.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9999999999999999999999999999876554 4778888889999999999999888877776777788888 444
Q ss_pred EEEEEecCCCCceeEEEEeCC-------CCeEEEEEeeccc----------------cCCc------eEEEEEcCCCCEE
Q 001363 543 RLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL----------------QHNS------VSVVHFDTAKDQI 593 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~----------------~~~~------v~~~~~~~~~~~l 593 (1092)
.+...+. .+.+.+-+.- .|+..+.-..|.. .... ...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 4444332 3334443321 1222222222110 0000 1124667876666
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC--CEEEEEeCCCeEEEEECCCCceeeec-----c-cccC
Q 001363 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----G-VLSD 665 (1092)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~-----~-~~~~ 665 (1092)
+-......+.++|++-..++.....+.+. +.-+.+-|++ ..|++...||.+.+|-.+.-...... . ....
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~ 323 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE 323 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc
Confidence 66667788999999999999888776553 4556666654 57899999999999987642111111 0 0011
Q ss_pred ceeeeeecCCCccccccccCCceeecCCCCCC-CccceeeccccccceeccccccCccccccccCCccccccEEEEEEec
Q 001363 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 744 (1092)
Q Consensus 666 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 744 (1092)
.+.++. +..... .+.+...|. ...++.--.+|...+|++..+......... ...-+..+.|..
T Consensus 324 Q~~~vr--~m~~~r---------p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~~ 387 (1062)
T KOG1912|consen 324 QVHVVR--PMEEFR---------PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFNL 387 (1062)
T ss_pred ceEEEe--echhcc---------cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----cccccccccccC
Confidence 111111 111000 000000122 333444445677778887632211110000 000000111111
Q ss_pred CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCe
Q 001363 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGV 824 (1092)
Q Consensus 745 ~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~ 824 (1092)
... .+.. .. +......+ +|.....+....|-.++-
T Consensus 388 ~~~-----------~v~k-----------------~~---------l~~LS~dg-~h~sGs~~~~~~p~p~~t------- 422 (1062)
T KOG1912|consen 388 STK-----------LVGK-----------------TS---------LISLSDDG-SHSSGSTCVRMRPMPELT------- 422 (1062)
T ss_pred cee-----------ehhh-----------------cc---------ccchhhcC-CCCCCceeeecccCcccc-------
Confidence 000 0000 00 00000000 133333333332211110
Q ss_pred EEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE
Q 001363 825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 904 (1092)
Q Consensus 825 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~ 904 (1092)
.+...+.+. +....-| ++|.|...|+|.++|+.++..-+.+..|+..|.++.|-.... |++.
T Consensus 423 ------------~~~~~p~~n-~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSf 484 (1062)
T KOG1912|consen 423 ------------KVENDPGGN-TPAGTVP----LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSF 484 (1062)
T ss_pred ------------eeecCCCCC-ccceeee----eEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEe
Confidence 011111111 1122233 899999999999999999999999999999999999976544 3333
Q ss_pred e----------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceeeeee
Q 001363 905 G----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQW 973 (1092)
Q Consensus 905 s----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~ 973 (1092)
+ .-+.+.|-|+.+|..+..+-++.++. .+|..+..|.-|++|++. .+.-+.+||+.+..+++..
T Consensus 485 sys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~m 559 (1062)
T KOG1912|consen 485 SYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLM 559 (1062)
T ss_pred eeccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCceEEEEecccchHHHhhccchHHHHH
Confidence 2 23457788998876444333333322 479999999999999994 7788999999887776542
Q ss_pred ccCCCCC-EEEEEEe-cC----------------CCEEEEEECCCcEEEEEcCCCceEEe-ecc-ccccCCCCccccccc
Q 001363 974 FPISSVP-ISQATFS-CD----------------CRMVFTSFVDGTLSIHEASNLEVQCR-ILS-TAYLRPTTSCLHVYP 1033 (1092)
Q Consensus 974 ~~~h~~~-v~~l~fs-~d----------------g~~l~t~~~Dg~i~vwd~~~~~~~~~-~~~-~~~~~~~~~~~~v~~ 1033 (1092)
- -.-+ ++.+.|+ |. .+..++.+.|. +++.+.......+ ... ..... .....-
T Consensus 560 S--~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es--~~~~~~~~a~~~sdgsq~~~a~e----sfafal 631 (1062)
T KOG1912|consen 560 S--LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVES--RIYHITLSALVVSDGSQVNTAWE----SFAFAL 631 (1062)
T ss_pred h--hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccc--hheehhhhhhhhccccchhhHHH----HHHHHH
Confidence 2 2334 8889998 32 12334333232 3333222111100 000 00000 000112
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1034 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1034 ~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
++++|- +..++.|..+|.+.+||+.-.+
T Consensus 632 ~~mAwk---~d~lv~GD~~GNl~~WDlg~R~ 659 (1062)
T KOG1912|consen 632 CAMAWK---DDILVVGDVEGNLVVWDLGRRQ 659 (1062)
T ss_pred Hhhhcc---CCeeEeecccCceeEEeccccc
Confidence 346666 4799999999999999975443
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.7e-18 Score=170.87 Aligned_cols=254 Identities=13% Similarity=0.179 Sum_probs=185.3
Q ss_pred CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeeccccc------ceeeEeeecCCCCcEEEEEECCC-CCEEEEEeCCC
Q 001363 346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS------MLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH 418 (1092)
Q Consensus 346 g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~------~~~~~~~l~~h~~~V~~l~~spd-g~~las~~~d~ 418 (1092)
|+ ++|.|+.|..|.|||+.--..+. +..-+.... ..-+.....+|+..|.+++|+.+ ...||+||.|.
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 55 79999999999999986432221 000000000 00012235589999999999985 56789999999
Q ss_pred EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCC
Q 001363 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 498 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 498 (1092)
+|++||+.+|++.. ++..|.+.|.+++|+|.... +|++|+.|++|.+.|.+........-...+.|-.++|.+...
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE 342 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence 99999999998776 67789999999999998776 899999999999999885333322223567788899987643
Q ss_pred ccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc
Q 001363 499 IHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1092)
Q Consensus 499 ~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1092)
..++++..||+++-+|++.. ++..++..|..+|.++++++.-..+++.+ ..++.|.+|+....... ....|...
T Consensus 343 -~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~~Vklw~~~~~~~~-~v~~~~~~ 417 (463)
T KOG0270|consen 343 -NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDKVVKLWKFDVDSPK-SVKEHSFK 417 (463)
T ss_pred -eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec---cccceEEEEeecCCCCc-cccccccc
Confidence 57888899999999999987 67889999999999999998776554443 23778999998644331 12222222
Q ss_pred CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceE
Q 001363 578 HNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~ 613 (1092)
-+...|.++.|+-..+ +.|+..+.++|||+.+...+
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 3456777888886555 45777788999999876543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.5e-18 Score=167.88 Aligned_cols=239 Identities=15% Similarity=0.182 Sum_probs=179.5
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC-
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD- 407 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd- 407 (1092)
...||+++|..++|+|-....+|+||.|.+|.||++..+....... -....|.||...|-.++|+|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~wHPtA 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQWHPTA 143 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEeecccc
Confidence 4579999999999999888899999999999999998765554321 112338899999999999995
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
.+.|++++.|.+|.+||+.+|+.+. ++. |...|.++.|+.||. ++++.+.|+.|+|||..+++.+..-.+|.+.
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 5678899999999999999998665 455 999999999999999 8999999999999999999999888888764
Q ss_pred eE-EEeecccCCccEEEEEe---cCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001363 488 VY-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 488 v~-~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
-. .+.| -.++.++.+|. .+..+-+||....+....+. .....|.---|.+|...++.++ .||+.|+.|.
T Consensus 218 k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G---KGD~~IRYyE 292 (472)
T KOG0303|consen 218 KPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG---KGDSSIRYFE 292 (472)
T ss_pred CcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe---cCCcceEEEE
Confidence 32 2223 33556555543 46789999987766543222 2334566667889999999887 4688899999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1092)
+........+-..-....+-..+.|.|..
T Consensus 293 it~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 293 ITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred ecCCCceeEEecccccCCccccccccccc
Confidence 87665322211111112355666676653
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8e-19 Score=191.03 Aligned_cols=284 Identities=19% Similarity=0.293 Sum_probs=220.2
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
+..|.||...|.|+.|...|. ++++|+.|..|+||..+++.++.. +.||.+.|+.++.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSS 242 (1113)
T ss_pred HHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccch
Confidence 466889999999999999998 689999999999999999999876 889999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE---Eec
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FEG 483 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~---~~~ 483 (1092)
+..++|+++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||..-.-.+.. ++.
T Consensus 243 ~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~ 313 (1113)
T KOG0644|consen 243 NNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKF 313 (1113)
T ss_pred hhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCc
Confidence 99999999999999999999998776 67899999999999993 3688899999999871111111 011
Q ss_pred -CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEEEEecCCCCceeEEEEe
Q 001363 484 -HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 484 -~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd 561 (1092)
...-+.++.| ..++..++|++.|+.-..|.+.-.. .+...+.-+.++.|-. +.+++- .+..+.+|+
T Consensus 314 ~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwn 381 (1113)
T KOG0644|consen 314 TEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWN 381 (1113)
T ss_pred ccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeeeee
Confidence 1123344444 4466778999999988888554221 1111222222232322 222222 266788999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1092)
+.+|.+.+.+.+|. ..+..+.++|-+..+ .+++.||...|||+-.|.+++..... + ..+....||+||..++..
T Consensus 382 l~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 382 LYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred cccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecC
Confidence 99999999999988 899999999987766 45899999999999999888776633 2 356788999999999999
Q ss_pred eCCCeEEEEECCCCce
Q 001363 641 ANENRIKILETPESNS 656 (1092)
Q Consensus 641 ~~dg~i~iw~~~~~~~ 656 (1092)
..-|.++|.....+..
T Consensus 457 d~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 457 DDHGQLYILGTGQSKS 472 (1113)
T ss_pred CCCCceEEeccCCCcc
Confidence 8889999988776543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-16 Score=161.26 Aligned_cols=498 Identities=12% Similarity=0.175 Sum_probs=286.3
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEE-ecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLW-DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iw-d~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
.|+.-|.|+.|+.+.. ++.+++ |..+.+| |+.+.+.. ....+ ..|.. ...|-.+- +..=-.....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~-~~~~p--------~df~p--t~~h~~~r-s~~~g~~~d~ 77 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVE-VAKLP--------DDFVP--TDMHLGGR-SSGGGKGSDT 77 (737)
T ss_pred ccceeEEeecccccce-EEEecc-CceEEEeecccchhhh-hhhCC--------cccCC--cccccccc-ccCCCCCcce
Confidence 5667788999999987 555544 4555555 44433221 11110 00000 00010000 0000012357
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
++.++.||.+.|-+-... .-+ ...+|.+.|.+-.|+|||. -|++++.||.|++|. ++|-...++.....+|.|
T Consensus 78 ~~i~s~DGkf~il~k~~r-VE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSAR-VER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC 150 (737)
T ss_pred EEEEcCCceEEEecccch-hhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence 888889998888775442 122 4678999999999999999 799999999999999 788766666667889999
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001363 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
++|.|+.+ ..+++. .+.+.+=-+........+..|.+-|.++.|++..+.+++++. +-...+||.. |..+..
T Consensus 151 ~~W~p~S~-~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 151 ARWAPNSN-SIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFT 222 (737)
T ss_pred EEECCCCC-ceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccccc
Confidence 99987654 344443 355666666777778889999999999999999999999986 6779999965 455555
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
-..|. .+|++++|+|+ +.++.++. +++| +..+ ....|..++||+||..+++|+..|.+.+=.
T Consensus 223 S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 223 SAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred CChhc---cceeeeeeccc-cceeeeee-eeee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEee
Confidence 55555 89999999999 55555554 3344 2211 234588999999999999999998876533
Q ss_pred CCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCC
Q 001363 651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 730 (1092)
Q Consensus 651 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~ 730 (1092)
.-..+... +..-++......|.+-|+..+ .+..+.+|
T Consensus 285 ~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~~---v~d~LE~p- 321 (737)
T KOG1524|consen 285 AIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVATG---VQDILEFP- 321 (737)
T ss_pred eehhhhhh---------------------------------------ccceeEeeccceEEeehhhhh---HHHHhhCc-
Confidence 22221110 111112222222333332211 11222222
Q ss_pred ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
..+..... .-..|+++.+. .+++|.-. -|++. ..++. .+..+.-+.
T Consensus 322 ----~rv~k~sL--~Y~hLvvaTs~-qvyiys~k-----------------nwntp-----iiidg----re~tr~lie- 367 (737)
T KOG1524|consen 322 ----QRVVKFSL--GYGHLVVATSL-QVYIYSEK-----------------NWNTP-----IIIDG----REDTRNLIE- 367 (737)
T ss_pred ----cceeeeee--ceeEEEEEecc-EEEEEecC-----------------CccCc-----EEEec----cccchhHhh-
Confidence 23333332 22334444333 45554311 12211 01000 000000000
Q ss_pred ecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC-----eEEEEEcCCCCCEEEEE--eCCCcEEEEEc-CCceeeEe-
Q 001363 811 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVISK- 881 (1092)
Q Consensus 811 s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg--~~dg~v~iwd~-~~~~~~~~- 881 (1092)
...+++......++.+|..+ |+.....+.+... -..+.+. ...|+.- .....+.+||. .+|+....
T Consensus 368 -q~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa---ndtLaird~ad~kvlhlFd~istgk~qgDg 442 (737)
T KOG1524|consen 368 -QGEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA---NDTLAIRDNADPKVLHLFDLISTGKRQGDG 442 (737)
T ss_pred -hhhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeecc---cceEEeecCCCCeeEEeccCCCCCcccCCc
Confidence 01123333333556676654 3222222211111 1233333 2244432 23346788998 77765422
Q ss_pred -eccccCCeEEEEEc----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeC
Q 001363 882 -LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956 (1092)
Q Consensus 882 -l~~h~~~V~~l~~s----pdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d 956 (1092)
+-.|...|..++.. ++.+.++.....+.+.|=.+++-... +.....+..|..++|+..-+.|+--.|
T Consensus 443 k~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke--------e~I~KiGTmVhtLawndttNiLcglqD 514 (737)
T KOG1524|consen 443 KSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE--------EEIYKIGTMVHTLAWNDTTNILCGLQD 514 (737)
T ss_pred cccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch--------hhhhhhhhhhhhhhhccccceeeeecc
Confidence 12366667666664 45577888888888888777652111 111112235889999999998888899
Q ss_pred CcEEEEEcCC
Q 001363 957 THLAIYEAEE 966 (1092)
Q Consensus 957 ~~i~lwd~~~ 966 (1092)
+.+.||-..+
T Consensus 515 t~fsVWy~pn 524 (737)
T KOG1524|consen 515 TCFSVWYYPN 524 (737)
T ss_pred ceEEEEEcCC
Confidence 9999998754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-18 Score=193.89 Aligned_cols=251 Identities=14% Similarity=0.160 Sum_probs=197.1
Q ss_pred CceEEeecCCCce---EEEEEcCCCcEEEEecCCC---CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001363 336 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 336 ~V~~v~~spdg~~---llasg~~dg~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
.-..++|.+.|.. ++|.|..||.|.+||...- ..... ......|++.|..+.|++.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----------------la~~~~h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----------------LATKSKHTGPVLGLDFNPFQG 129 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----------------HhhhcccCCceeeeeccccCC
Confidence 6678999888775 6899999999999998752 11110 011556999999999999655
Q ss_pred -EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc--
Q 001363 410 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-- 486 (1092)
Q Consensus 410 -~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-- 486 (1092)
+||+|+.||.|.|||+..-+.-.... -....+.|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..+..
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998743222110 1124567999999987766 899999999999999999988877766554
Q ss_pred CeEEEeecccCCccEEEEEecCC--eEEEEEcCCCCc-eEEecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeC
Q 001363 487 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
.+..+.|+|+...+++++...|+ .|.+||++.... ..++..|...|.++.|++.+ ++|++++. |+.|.+|+.
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~ 283 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP 283 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence 46788999886654444444444 499999986554 45678999999999999977 77888875 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++++.+..+.... +.+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999998755 8899999999887 66778999999999987654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=156.73 Aligned_cols=289 Identities=17% Similarity=0.227 Sum_probs=200.6
Q ss_pred CcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeec-CCCCcEEE
Q 001363 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR 401 (1092)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~-~h~~~V~~ 401 (1092)
|......|++|...|+++.|-.+++ |.+|..-|.|++|++.+...+.. +. .|...|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~ 61 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN 61 (323)
T ss_pred CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence 4455678889999999999999986 68899999999999998776543 33 36788999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC-cEEEEEC--------
Q 001363 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-TIKVWDA-------- 472 (1092)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~-~i~vwd~-------- 472 (1092)
+.--|+ ..|.+-+.|..+.+|++..+..+ ..|.-.++++-|.+-. ++..+... ..-.++-
T Consensus 62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfS----l~~~~k~~eqll~yp~rgsde~h~ 130 (323)
T KOG0322|consen 62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFS----LVKKPKNSEQLLEYPSRGSDETHK 130 (323)
T ss_pred eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccce----eccCCCcchhheecCCcccchhhh
Confidence 998887 56777889999999999875432 2455566666665531 22221111 1111111
Q ss_pred -CCCceeEEE------ecCCcCeEEEeecccC-CccEEEEEecCCeEEEEEcCCCCceE----------EecCCCCceEE
Q 001363 473 -VTGSRTYSF------EGHGAPVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLGCTR 534 (1092)
Q Consensus 473 -~~~~~~~~~------~~~~~~v~~i~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~~i~~ 534 (1092)
+-+...+.. .+..+.+.+..+.... ..-++++|..+|.+.+||+.++.... ....|..++.+
T Consensus 131 ~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls 210 (323)
T KOG0322|consen 131 QDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS 210 (323)
T ss_pred hccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCccee
Confidence 111111111 1123445544432221 22357788899999999999874333 34556778999
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCC--CeEE-EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
+.+.+.-..=++++. ...+..|+++. +.+. +... ...+..|..+.+-||++.+++++.|+.||||+.++.+
T Consensus 211 ldyas~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~--~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 211 LDYASSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEI--TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred eeechhhcCCcCCCc----cccceeeeeccccCcccccceE--EecCCCccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence 998876555555554 33466666643 3321 1111 1123568889999999999999999999999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
++..+..|. ..|++++|+|+..++|.++.|+.|.+|++
T Consensus 285 pLAVLkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAVLKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999886 46999999999999999999999999986
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.6e-18 Score=173.28 Aligned_cols=302 Identities=16% Similarity=0.235 Sum_probs=234.9
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+...|.+|.+.|..|.|...|. +|++|+.|..|.+||+.++..... +..||...|..-.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKF 193 (559)
T ss_pred hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhc
Confidence 44567899999999999999998 799999999999999999887653 25679999988889
Q ss_pred CC--CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001363 405 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1092)
Q Consensus 405 sp--dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~- 481 (1092)
-| +.+.|++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|+.++.....+
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence 88 5678999999999998877544444434467789999999999999887 7999999999999999887654433
Q ss_pred --ecCCc---CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce------EEe------cCCCCceEEEEEccCCCEE
Q 001363 482 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 482 --~~~~~---~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~------~~~~~~i~~~~~s~dg~~l 544 (1092)
..+.. ...+++..|.. ...+++++.|..+++||.+..... ..+ ......|++++|+.++.-|
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeccCCccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 22333 45677776653 358999999999999998653322 111 1223479999999877766
Q ss_pred EEEecCCCCceeEEEEeCCCCe------------E-EEEEeeccccCCceEEEE-EcCCCCEEEEEeCCCcEEEEECCCC
Q 001363 545 FSCGTSKEGESFLVEWNESEGA------------I-KRTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~------------~-~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
++... +..|+++....+. . .+.++||... ..|..+. |.|...++++|+.-|.|.||+-.++
T Consensus 352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence 66554 4458888554322 2 2347888722 3477764 5788899999999999999999999
Q ss_pred ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
+.+..+.+..+ .|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99999887766 5899999999999999999999999987544
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=174.58 Aligned_cols=262 Identities=15% Similarity=0.196 Sum_probs=196.5
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc-----CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
.+..|...|++++|.|-...|++++.||++++|+++ ....+.++.++.+|.++|.|+++.++++ .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477799999999999999999999999999999993 3344667889999999999999999999 799999999
Q ss_pred cEEEEECC------CC----ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceE
Q 001363 466 TIKVWDAV------TG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCT 533 (1092)
Q Consensus 466 ~i~vwd~~------~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~ 533 (1092)
+|+.|++. .. .....+.||.+.|+.++++..+ ..|++++.||+++.|+...... .++..... -..
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999543 11 2345778999999999998766 4799999999999998766555 33322222 223
Q ss_pred EEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001363 534 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 534 ~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++.+.... ...++... .+.-.+.+...+..+..+..... ....+..+..+|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443322 11222111 11223344444444444432221 12457778899999999999999999999999
Q ss_pred CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccc
Q 001363 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1092)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 663 (1092)
++..+.....+ ...+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999888766 446899999999999999999999999999877666554433
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-17 Score=160.41 Aligned_cols=302 Identities=12% Similarity=0.110 Sum_probs=214.8
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEE-eeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
+..-+.+|.+.|.++.||.+|+ +||+|+.|..++||+++.--..++ +.+. ..-..|...|.|++|
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~F 113 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLEF 113 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEEE
Confidence 4466889999999999999997 799999999999999875322221 1111 012346789999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-ee--EEE
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RT--YSF 481 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~--~~~ 481 (1092)
....++|.+|..+++|..-|+++.+.+... .-....+.|..+..+|... .+++.+.++.|.+||..... .. ..+
T Consensus 114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 114 DLENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred ccCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeee
Confidence 999999999999999999999997655421 1112334899999999987 79999999999999987654 22 222
Q ss_pred ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-------ecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
........++.|+|.. -.+|++.+..+-+-+||.+....... +........++.|+|.|+.+.+.-. .
T Consensus 191 AN~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~ 265 (609)
T KOG4227|consen 191 ANSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----G 265 (609)
T ss_pred cCCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----c
Confidence 2233456677787753 36888999999999999987654321 1111223467889999999887643 2
Q ss_pred eeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------------
Q 001363 555 SFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------------------- 610 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-------------------- 610 (1092)
..-.+||..+..+...-..|.. ....+.+++|..+. .+++|+.+-.|++|.+...
T Consensus 266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 2345677766554332222221 11346778887664 4899999999999987531
Q ss_pred ---ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 611 ---QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 611 ---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
..+..+.+| ...++.+.|+|...+|++.+-...++||.-.
T Consensus 345 ~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 122334444 4457899999999999999999999999754
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=153.17 Aligned_cols=260 Identities=17% Similarity=0.223 Sum_probs=186.4
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCC-------CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d-------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
.+|..|.++|+.++-+|-.+++|+++..+ ..+.||.+........ .. .......+-+.+-+.|.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~-------tlE~v~~Ldteavg~i~ 127 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SS-------TLECVASLDTEAVGKIN 127 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cc-------hhhHhhcCCHHHhCcee
Confidence 55678899999999999988899987653 2367887754321100 00 00000111224566999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceE---EEcccccceeEEEEec--CCCcEEEEEEeCCCcEEEEECCCC
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
|+.|.|++..||+-. |..|.+|++..+..+.... .-.+|....++-+|+| ||. .+++.+ |+++..||+++.
T Consensus 128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTM 203 (370)
T ss_pred eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccch
Confidence 999999999999875 7779999999876521110 1123566788999999 666 455544 899999999998
Q ss_pred ceeEEE-ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEE-EEecCCC
Q 001363 476 SRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKE 552 (1092)
Q Consensus 476 ~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~-~~~~~~~ 552 (1092)
++...+ ..|...|..+.|+|.. ..+|++++.||.|++||.+..+ ++..+..|.+.+.++.|+|.-..|+ +++.
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S--- 279 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS--- 279 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---
Confidence 887777 5688899999998864 3689999999999999998755 4668899999999999999765554 4443
Q ss_pred CceeEEEEeCCCCe-----------------------------EEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcE
Q 001363 553 GESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVI 602 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i 602 (1092)
+..|.+|...+-. .+.++..|. +.|++++|+....++++ -+.||.+
T Consensus 280 -Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 280 -DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred -CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceE
Confidence 5557777432211 123444555 89999999988887654 7899998
Q ss_pred EEEECC
Q 001363 603 KIWDMN 608 (1092)
Q Consensus 603 ~iwd~~ 608 (1092)
.|=.+.
T Consensus 356 iIs~V~ 361 (370)
T KOG1007|consen 356 IISSVP 361 (370)
T ss_pred EeecCC
Confidence 876554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.2e-16 Score=150.71 Aligned_cols=327 Identities=14% Similarity=0.208 Sum_probs=223.8
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceE
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~ 613 (1092)
.+|||+|+++++++ +..+.+-|..+-+..+.+... +.|..+.|..|..++++ ...++.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 68999999999997 345888888887776666553 36778889999888877 568889999999988887
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecC
Q 001363 614 TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1092)
..+... ..++..++|||||+.+... ..+-.|.+|.+.+..... +.-....+..++|+|+
T Consensus 85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~d----------------- 144 (447)
T KOG4497|consen 85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPD----------------- 144 (447)
T ss_pred EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCC-----------------
Confidence 777644 4568999999999766554 458899999998875443 3333444566777654
Q ss_pred CCCCCCccceeeccccc---cc-----eeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC--CeeEEEe
Q 001363 693 DPKEDVKPEISVEAENK---SE-----VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWR 762 (1092)
Q Consensus 693 ~~s~d~~~l~s~~~d~~---i~-----lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~~w~ 762 (1092)
|++.+..+.... +. -|.+-. ......-..+.+.|+|||..+++-..- -.+..|+
T Consensus 145 -----g~f~ai~sRrDCkdyv~i~~c~~W~ll~-----------~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe 208 (447)
T KOG4497|consen 145 -----GQFCAILSRRDCKDYVQISSCKAWILLK-----------EFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE 208 (447)
T ss_pred -----CceeeeeecccHHHHHHHHhhHHHHHHH-----------hcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence 444444333211 11 122110 001123445678899998866544332 1111111
Q ss_pred ecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee-----
Q 001363 763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI----- 836 (1092)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~----- 836 (1092)
-.-.+..++++|.++++++|+ |+.+|+.+--+.+..
T Consensus 209 --------------------------------------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflh 250 (447)
T KOG4497|consen 209 --------------------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLH 250 (447)
T ss_pred --------------------------------------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhcc
Confidence 234577888999999999887 777777653222111
Q ss_pred -------------------------------------------------------EEec------CCCCCeEEEEEcCCC
Q 001363 837 -------------------------------------------------------LTIM------PPSPTATSLAFNPHD 855 (1092)
Q Consensus 837 -------------------------------------------------------~~~~------~~~~~i~~l~~s~~d 855 (1092)
..++ .+...+.-++||+ |
T Consensus 251 l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-D 329 (447)
T KOG4497|consen 251 LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-D 329 (447)
T ss_pred chhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-C
Confidence 1111 1223567789999 8
Q ss_pred CCEEEEEeCC--CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc
Q 001363 856 NNVIAIGMDD--STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 933 (1092)
Q Consensus 856 ~~~lasg~~d--g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 933 (1092)
..++|+-.+. ..+.+||++.-+....+. ...+|....|.|....|+.+.....+++|.... ..++..+....
T Consensus 330 s~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg-----~~~V~vP~~GF 403 (447)
T KOG4497|consen 330 STYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-----PRVVGVPKKGF 403 (447)
T ss_pred ceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC-----ceEEecCCCCc
Confidence 9888876543 489999999877666665 567899999999999999888878899999887 34555554444
Q ss_pred CCCCCceEEEEccCCCEEEEEe
Q 001363 934 TLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 934 ~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
.|..+.|.-+|..++..+
T Consensus 404 ----~i~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 404 ----NIQKLQWLQPGEFIVLCG 421 (447)
T ss_pred ----eeeeEEecCCCcEEEEEc
Confidence 499999999999988843
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=166.56 Aligned_cols=246 Identities=17% Similarity=0.160 Sum_probs=163.3
Q ss_pred EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcCeEEEeecccCCccEEEEEecCCeEEE
Q 001363 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 513 (1092)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~v 513 (1092)
.++.||++.|+|++|+.||. +|++|+.|-.+.|||.-..+.++.+ .||.+.|.++.|.|..+..++++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 36889999999999999999 8999999999999999988888887 68999999999999999999999999999999
Q ss_pred EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CE
Q 001363 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQ 592 (1092)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 592 (1092)
+|+...+.... +.. ..+....+..|. ..|..++..|++ +.
T Consensus 122 fdl~~~~~~~~-------------------------d~~-----------~~~~~~~~~cht---~rVKria~~p~~Pht 162 (758)
T KOG1310|consen 122 FDLDSSKEGGM-------------------------DHG-----------MEETTRCWSCHT---DRVKRIATAPNGPHT 162 (758)
T ss_pred Eeccccccccc-------------------------ccC-----------ccchhhhhhhhh---hhhhheecCCCCCce
Confidence 99875332110 000 011122233344 677788888888 77
Q ss_pred EEEEeCCCcEEEEECCCCceEE-E-------EeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEEEECCCC-ceeeecc-
Q 001363 593 ILAAGDDHVIKIWDMNKVQLLT-T-------IDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAG- 661 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~-~-------~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~- 661 (1092)
+.++++||+++-+|++....-. . .......-...++..+| +..+|++|+.|-..++||.... +.+..-.
T Consensus 163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~ 242 (758)
T KOG1310|consen 163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT 242 (758)
T ss_pred EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence 8899999999999998632110 0 01111122456889998 5678999999999999994321 1111100
Q ss_pred ---cccCceeeee-ecCCCccccccccC------CceeecCCCCCCCccceeeccccccceeccccccCccccc
Q 001363 662 ---VLSDNLRKLS-VNPISTVTGAGIAN------GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 662 ---~~~~~v~~~~-~~~~~~~~~~~~~~------~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~ 725 (1092)
.......|+. |+|......-+... ..+.| +|+|.-++..-....|.++++...+......
T Consensus 243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ccCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 0011111222 22222211111111 12334 6778777777666778888877655443333
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-15 Score=141.63 Aligned_cols=286 Identities=13% Similarity=0.140 Sum_probs=197.5
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.|.+-+++|.+++++++..+|.|-+..+..-.. +... +.....+. +.++|..++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~---------~~gk~~iv----~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAE---------PPGKLKIV----PEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccC---------CCCCccee----eccccCCCeeeeeee--hh
Confidence 345567899999999999999999998764321 1110 01111111 123599999999998 46
Q ss_pred EEEEEeCCeEEEEEcCCcee------eEEe-------cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001363 816 YLFSASGGVISLYIVMTFKT------ILTI-------MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 816 ~l~~~sdg~i~iwd~~~~~~------~~~~-------~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
+|++++||.|+-|....... +... ...-.+|+++-+.|..+ -++.++.|+.++-||+++|+....+
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEE
Confidence 88889999999998754322 1111 11235789999999444 4455558999999999999999999
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC----CCCCceEEEEccCCCEEEEEeCCc
Q 001363 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT----LAPSETHIQFHKDQTRFLLVHETH 958 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~dg~~la~~~d~~ 958 (1092)
+||++.|.+++--.....+.||++||+++|||.++++... .+...+.... ...+| .+..-+..+|++|....
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK 228 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence 9999999999986666788999999999999999976444 2222222111 11223 45556778999988889
Q ss_pred EEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEE
Q 001363 959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1038 (1092)
Q Consensus 959 i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1038 (1092)
+.+|.+.+.++...+. -..+|..+.|-.| .+++++..++|.-|.+. |.+..... .. +...++.+...
T Consensus 229 lslwhLrsse~t~vfp--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~ 295 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFP--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQT 295 (325)
T ss_pred eeEEeccCCCceEEEe--cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccC
Confidence 9999999988887643 3567888888644 67788888899999876 33332222 11 22234444555
Q ss_pred CCCCCCEEEEEeCCCcEEEEe
Q 001363 1039 HPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1039 ~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
+| -..+-.++..+.+.++.
T Consensus 296 ~p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 296 SP--IKFISIAGFSNKLHILK 314 (325)
T ss_pred Cc--eEEEEecccceeeeeee
Confidence 66 35666677777777653
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=172.07 Aligned_cols=271 Identities=14% Similarity=0.194 Sum_probs=192.8
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
...+|.-|.+.|..++|+|-.. .|++++.||++.+|+++....-....+ -+...+.+|.++|.|++++
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEec
Confidence 3458889999999999999987 799999999999999943211111010 1112378999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCC-------cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
++++.+.+|+.||+|+.|++.... .......+.||++.|+.+++|+... .|++|+.||+++.|+......
T Consensus 354 ~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~- 430 (577)
T KOG0642|consen 354 SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP- 430 (577)
T ss_pred CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-
Confidence 999999999999999999664211 1112235779999999999999888 699999999999999766655
Q ss_pred EEEecCC--cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEccCCCEEEEEec
Q 001363 479 YSFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 479 ~~~~~~~--~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
.+|.... +.-.++.+..+.- ...++...-+.-.+.++........+... ...+..+...|.+...+++..
T Consensus 431 ~~f~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 431 CTFGEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred cccCCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence 3332221 2223343321110 11222222222233333333333332221 124667788888888888875
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
+..|+++|..++..+.....|. ..++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 510 ----d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 ----DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ----CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 6679999999999999998888 89999999999999999999999999999877776655443
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-17 Score=158.76 Aligned_cols=292 Identities=13% Similarity=0.172 Sum_probs=203.6
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCC-CceE
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT 533 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~-~~i~ 533 (1092)
.++++-..|.|++||..+++.+..|+++...++.+.|......+.+.+++.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6788888999999999999999999999999999999875566789999999999999999877655433 333 3566
Q ss_pred EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE-EEEEe-eccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 001363 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~ 610 (1092)
+++..-.++.++++..-...+..|.+||.+..+. ++.+. .|. +.|+++.|+|.. +.|++||.||-|.+||++..
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 6666667888888776666678899999998776 55443 344 899999999975 67889999999999999764
Q ss_pred c----eEEEEeCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccC
Q 001363 611 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1092)
Q Consensus 611 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 685 (1092)
. ++.++. ....|..+.|..++ +.+.+.+..++..+|++..+.....+....-..... .. -..
T Consensus 199 ~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~-r~---------~~~ 265 (376)
T KOG1188|consen 199 NEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL-RK---------EDN 265 (376)
T ss_pred cchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH-Hh---------hhh
Confidence 2 223332 23458899999876 458888999999999999886444333211100000 00 000
Q ss_pred CceeecCCCCCCCccceeecc-ccccceeccccccCc-cccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001363 686 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 686 ~~~~~~~~~s~d~~~l~s~~~-d~~i~lw~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~ 763 (1092)
....++.....++...+.++. .++..++-+....+. ..........+|..-|.++.|...+..+.+++.||.+.+|..
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 011112221234444444444 566666654422121 122233344557777888899989999999999999999985
Q ss_pred c
Q 001363 764 P 764 (1092)
Q Consensus 764 ~ 764 (1092)
+
T Consensus 346 ~ 346 (376)
T KOG1188|consen 346 E 346 (376)
T ss_pred C
Confidence 3
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-16 Score=154.92 Aligned_cols=294 Identities=11% Similarity=0.073 Sum_probs=209.4
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC---cccceEEE-cccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~~-~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+.+|.+.|.++.||.++++||+|+.|..+++|+++.-- ..+.+... ..|...|.|++|....+ .+.+|+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCccee
Confidence 67899999999999999999999999999999986321 11112111 23567899999998887 89999999999
Q ss_pred EEEECCCCceeEEEec--CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccCCC
Q 001363 468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~ 542 (1092)
...|+++.+.+..+.. ..+.|+.+..+|. ...|++.+.+|.|.+||.+.... ............++.|+|-..
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999999988752 2348999988876 36899999999999999986552 333444455778899999887
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEE-E---EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGAIK-R---TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
.|+....... -+-+||.+..... . .+.+.......-..+.|+|+|+++++.-....-.+||+.+.++......
T Consensus 208 ~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 208 ALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred eeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 7666554333 3788998754321 1 1222221112335678999999999877666667788877544322222
Q ss_pred CC-----CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-----------------------ceeeecccccCceeee
Q 001363 619 GG-----GLPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRKL 670 (1092)
Q Consensus 619 ~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-----------------------~~~~~~~~~~~~v~~~ 670 (1092)
|. ....+.+++|-.|- .+++|+++-.|++|.+... ..+..+++|..-+..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 21 12235677886554 4999999999999998732 1234455565555555
Q ss_pred eecCCCccccccccCCceeecCCCCCCCccceeeccccccceecc
Q 001363 671 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~ 715 (1092)
.|+ |...++++.+-++.+++|.-
T Consensus 364 RF~----------------------~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 364 RFS----------------------QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eec----------------------CCcceEeccchhhheecccc
Confidence 554 55677888888899999973
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-14 Score=160.03 Aligned_cols=198 Identities=12% Similarity=0.140 Sum_probs=127.8
Q ss_pred eEEEEecCCCEEEEEe--CCeEEEEEcCC-c---eeeEEecCCCCCeEEEEEcCCCCCEEE-EEeCCCcEEEEEcCCcee
Q 001363 806 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~s~~d~~~la-sg~~dg~v~iwd~~~~~~ 878 (1092)
..++++|+++++++++ ++.|.+|++.+ + +.+..+. +.....+++++| ++++++ +...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 4566777777766665 46677777753 2 1222222 223466788999 777775 455669999999986332
Q ss_pred eE-------eeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEccCC
Q 001363 879 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 879 ~~-------~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
+. .... ......++|+|||++++++.. +++|.+|+++. ++......+...............+.|+|||
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 1111 234678999999999988876 89999999984 3322222222211111111134468999999
Q ss_pred CEEEEE--eCCcEEEEEcCCce----eeeeeccCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEEcC
Q 001363 949 TRFLLV--HETHLAIYEAEELT----CLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS 1008 (1092)
Q Consensus 949 ~~la~~--~d~~i~lwd~~~~~----~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~-Dg~i~vwd~~ 1008 (1092)
++++++ .++.|.+|++.... .+..... ......+.|+|||++|+++.. +++|.+|+++
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999986 45789999986432 2222111 124557899999999998775 8999999875
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-15 Score=141.19 Aligned_cols=281 Identities=16% Similarity=0.198 Sum_probs=192.7
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|.+-+++|.++ +|+.|..+|+|.+..+.+-..-.. ......+.....+|.++|..++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 567778999998 689999999999998864211000 000011111246899999999998 55777775
Q ss_pred CCCEEEEEEccCCCc---ccceEE--Ecccc-----cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001363 416 SKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~---~~~~~~--~~~h~-----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
||.|+=|.+..... .+...+ ...|. -.|+++...|... -++.++.|+.++.||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 49999998864332 111111 11222 2588999998777 46666689999999999999999999999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----------ceEEEEEccCCCEEEEEecCCCCce
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----------GCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
+.|.++.-.. ....+++|+.||++|+||.++.+....+..... .| .+..-+..++++++. .
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgG-----p 227 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGG-----P 227 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCC-----C
Confidence 9999987632 224789999999999999999988776543221 34 344556778988863 3
Q ss_pred eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC-C
Q 001363 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-G 634 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~ 634 (1092)
.+.+|++++.+....+.-. ..+..+.|.. ..++++++.+.|.-|.+. |.+....+...+ ...+..++.. -
T Consensus 228 ~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPI 298 (325)
T ss_pred ceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCce
Confidence 4899999999988888763 4777888864 568888888889989874 444444443322 2344444432 2
Q ss_pred CEEEEEeCCCeEEEE
Q 001363 635 TLLAVIANENRIKIL 649 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw 649 (1092)
+++-.++....+.|+
T Consensus 299 k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 299 KFISIAGFSNKLHIL 313 (325)
T ss_pred EEEEecccceeeeee
Confidence 344455555666554
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-15 Score=145.72 Aligned_cols=292 Identities=18% Similarity=0.251 Sum_probs=206.7
Q ss_pred eeecccCCCCceEEeec--CCCceEEEEEcC----CCcEEEEec--CCCCeeEEeeeeeeecccccceeeEeeecCCCCc
Q 001363 327 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~s--pdg~~llasg~~----dg~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~ 398 (1092)
+..+..+- .+.++.|| |+.+..||.|+. .+.|.|-.+ ++++.+...+ ..|.-+
T Consensus 38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 55566665 78889998 666677899985 245555444 4455444322 248899
Q ss_pred EEEEEECCCCC-----EEEEEeCCCEEEEEEccCCCc-ccceEE-----EcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 399 VNRVVWSPDGS-----LLGVAYSKHIVQLYAYHGGSD-ARQQLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 399 V~~l~~spdg~-----~las~~~d~~i~iwd~~~~~~-~~~~~~-----~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
++.+-|.||.+ +||+++ | .+++|.+...+. +..... -..+..++++..|+.-... ++.+++-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999873 566653 3 499999984221 111111 1246678999999886655 89999999999
Q ss_pred EEEECCCCce---eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCC--CCceEEEEEccCC
Q 001363 468 KVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSANG 541 (1092)
Q Consensus 468 ~vwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~--~~~i~~~~~s~dg 541 (1092)
.|||+++|.. ...+-.|...|..++|.. +.-+.+++.+.||.+|++|++..+.-. .++.+ ..+...++|++..
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999999733 456778999999999975 344799999999999999999866433 33333 3477888888854
Q ss_pred -CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceE---EE
Q 001363 542 -RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLL---TT 615 (1092)
Q Consensus 542 -~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~---~~ 615 (1092)
+++++...+ ...|.+.|++. ...+..+++|. ..|+.++|.|.. ..+.+++.|..+.+||+...-.. ..
T Consensus 255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 566665543 34588999885 45678888888 999999999974 67888999999999999753220 00
Q ss_pred EeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEE
Q 001363 616 IDAGGGLPENPRICFNK-NGTLLAVIANENRIKI 648 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 648 (1092)
+-.-.....|+.+.|++ .+..++++.. +.+.+
T Consensus 329 ilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 329 ILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 00111234689999996 6778887765 34444
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-14 Score=143.73 Aligned_cols=242 Identities=11% Similarity=0.147 Sum_probs=187.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
...+..+.|..|...|..|+.|| -++|..+...... ........|.-+-|+.. .+.+|+...-..+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence 34677788999999999999999 7888887643211 11122335666667654 213344433345999999988
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---CCceEEEEEccCCCEEEEEecCCC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
..+..+. ...+|.++.++. ++|+++-.+. |.|||+++.+...++... ...+.++++++.+.+++.-+...
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t- 151 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT- 151 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-
Confidence 8887775 566788888743 4676666555 999999999888766543 33566666777777888765422
Q ss_pred CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
.+.|++||..+-+.+..+..|. +.+.+++|+++|.+++++|+.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus 152 -~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 152 -SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 5669999999999999999888 99999999999999999999887 799999999999999866555678999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCC
Q 001363 632 KNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|++++|++.++.++|.+|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998854
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-16 Score=154.06 Aligned_cols=276 Identities=15% Similarity=0.173 Sum_probs=193.1
Q ss_pred EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEEcc
Q 001363 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH 426 (1092)
Q Consensus 349 llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~las~~~d~~i~iwd~~ 426 (1092)
.+|++-..|+|++||..+|+.+.. +++|...++.++|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 578888889999999999988875 667888888999987 46788999999999999999
Q ss_pred CCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEe----CCCcEEEEECCCCce-eEEE-ecCCcCeEEEeecccCCc
Q 001363 427 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI 499 (1092)
Q Consensus 427 ~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~----~d~~i~vwd~~~~~~-~~~~-~~~~~~v~~i~~~~~~~~ 499 (1092)
+......+ .+.+|. .+..+++.+-.++ ++++|. .|-.|.+||++..+. +..+ ..|...|++++|+|+ +.
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DP 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CC
Confidence 87655443 455666 4667777665666 566664 466799999998766 5444 679999999999997 45
Q ss_pred cEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 500 HFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
.+|++||.||.|.++|+...... ...-.+...|..+.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 79999999999999998765332 2233455678999999888 34555443 4458999998887655443321
Q ss_pred cc---------CCceEEEEEcCCCCEEEE-EeCCCcEEEEECC---CCce---EEEEeCCCCCCCCceEEEccCCCEEEE
Q 001363 576 LQ---------HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN---KVQL---LTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 576 ~~---------~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~---~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
.. ...+.......++...+. |+.-+...++-+. ++.. +..+.. ++...|+++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 00 011111111123334444 4435666665443 3333 233332 23455788999999999999
Q ss_pred EeCCCeEEEEECC
Q 001363 640 IANENRIKILETP 652 (1092)
Q Consensus 640 ~~~dg~i~iw~~~ 652 (1092)
|+.||.+.+|..+
T Consensus 334 GGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 334 GGEDGLLQAWKVE 346 (376)
T ss_pred cCCCceEEEEecC
Confidence 9999999999864
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-14 Score=158.07 Aligned_cols=275 Identities=14% Similarity=0.194 Sum_probs=178.1
Q ss_pred eEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEc
Q 001363 348 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 425 (1092)
Q Consensus 348 ~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~ 425 (1092)
+++++...++.|.+||+.+ |+...... + .+.+.+..++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3455667789999999974 33222111 1 1345677899999999997764 4778999999
Q ss_pred cCCCcccceEEEcccccceeEEEEecCCCcEEEEEE-eCCCcEEEEECCC-Cc---eeEEEecCCcCeEEEeecccCCcc
Q 001363 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH 500 (1092)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~d~~i~vwd~~~-~~---~~~~~~~~~~~v~~i~~~~~~~~~ 500 (1092)
.....+...... ...+....++|+|+++. ++++ ..++.|.+|++++ +. .+..+.+ ......++++ ++++
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~--p~g~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANID--PDNR 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeC--CCCC
Confidence 732222221122 12335678999999994 4444 4588999999874 32 2333332 2334556674 4666
Q ss_pred EEE-EEecCCeEEEEEcCCCCceEE-----e-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Ce--EEE
Q 001363 501 FIF-SISVDGKIKAWLYDSLGARVD-----Y-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR 569 (1092)
Q Consensus 501 ~l~-s~~~dg~i~vwd~~~~~~~~~-----~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~ 569 (1092)
+++ +...++.|.+||+++...... . ...+.....++|+|||++++++.. .++.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 664 555679999999986432211 1 112345678999999999988763 366799999873 33 333
Q ss_pred EEeeccc---cCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001363 570 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 570 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
.+..... +......+.++|++++++++. .++.|.+|++.... .+...... .....++++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332210 112234688999999999985 47899999986433 22222221 2356899999999999887
Q ss_pred C-CCeEEEEECC
Q 001363 642 N-ENRIKILETP 652 (1092)
Q Consensus 642 ~-dg~i~iw~~~ 652 (1092)
. +++|.+|++.
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8999999875
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-17 Score=177.42 Aligned_cols=287 Identities=14% Similarity=0.219 Sum_probs=224.8
Q ss_pred EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1092)
.++.+.+|. +.|+|+.|...|.++++|+.|..++||..+++.++....+|. ..++.++.+.+..++++++.|..|
T Consensus 182 ~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs--~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 182 NIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS--GDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc--cccchhccchhhhhhhhcccCceE
Confidence 345566776 899999999999999999999999999999999999988765 469999999999999999999999
Q ss_pred EEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc-Cccccc
Q 001363 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR-PSECQS 725 (1092)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~-~~~~~~ 725 (1092)
++|.+.++.++..+++|.+.|++++|+|.. +.+.||++++||..... ......
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------------sss~dgt~~~wd~r~~~~~y~prp 310 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------------SSSDDGTCRIWDARLEPRIYVPRP 310 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc--------------------------cCCCCCceEeccccccccccCCCC
Confidence 999999999999999999999999999742 55678999999966110 000001
Q ss_pred cccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001363 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1092)
Q Consensus 726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v 805 (1092)
. .......+..+.|..++..+++++.++....|.++.- .| +...+
T Consensus 311 ~---~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------------~~-----------------~~~~l 355 (1113)
T KOG0644|consen 311 L---KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------------AW-----------------RSNLL 355 (1113)
T ss_pred C---CcccccceeeeeccccccccccccCCcccccchhhHh---------------hh-----------------hccce
Confidence 1 1113355677888888999999999988887775431 11 12222
Q ss_pred eEEEEecCC-CEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001363 806 PCFALSKND-AYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 806 ~~~~~s~dg-~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
.-+.++.|- .+.+++ .+..+++|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+-.|.+++...
T Consensus 356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 222222222 333444 367899999999999999999999999999999888888899999999999999987766554
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001363 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 919 (1092)
.-.+.+..-+||+||..++....-|.+.|.....++
T Consensus 436 ~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 436 IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 334557778999999999988888999998765543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-14 Score=145.79 Aligned_cols=241 Identities=11% Similarity=0.176 Sum_probs=183.8
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcCCceee
Q 001363 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 879 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~ 879 (1092)
...+..+.|..|...|..|+....++|.................|..+-|+. .++|..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 3456677788888899999877788888876554333333344677777876 3666666544 5999999988888
Q ss_pred EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-E--eC
Q 001363 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 956 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~--~d 956 (1092)
..+. ...+|.++.+. .++|+.+=.+. |+|||+++ .+.+.+..........+.++++++.+.+||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~-----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKD-----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccc-----ceeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7776 55679899885 45666665544 99999998 4456655544332235667777777889998 3 45
Q ss_pred CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCc-EEEEEcCCCceEEeeccccccCCCCccccccceE
Q 001363 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus 957 ~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
|.|.|||+.+.+.+.. ...|.+.+.+++|++||.+|||+|..|+ |||+.+.+|..+..|+...+ ++...+
T Consensus 153 GdV~l~d~~nl~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEEEE
Confidence 8899999999988887 5589999999999999999999999998 89999999999999983332 233457
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1036 ~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
++|+| |+.+|++.+..++|++|.+....
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 89999 68999999999999999996544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.3e-16 Score=147.73 Aligned_cols=229 Identities=14% Similarity=0.175 Sum_probs=176.4
Q ss_pred CCeEEEEEcCCce--e-eEEecCCCCCeEEEEEcCCCCCEEEEEeCC-------CcEEEEEcCCc---------eeeEee
Q 001363 822 GGVISLYIVMTFK--T-ILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------STILIYNARSS---------EVISKL 882 (1092)
Q Consensus 822 dg~i~iwd~~~~~--~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-------g~v~iwd~~~~---------~~~~~l 882 (1092)
++.|.+.++.... . -..|..|.++|..++-+|.+.++|++...+ ..+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5778877776443 2 245677889999999999888899988764 25789988642 345555
Q ss_pred c-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEcc--CCCEEEEEeCCcE
Q 001363 883 E-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLVHETHL 959 (1092)
Q Consensus 883 ~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~la~~~d~~i 959 (1092)
. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+......+....... .....++-+||| ||..+++..|+++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e--~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE--MRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc--ccceecccccCCCCccceEEEeCCCcE
Confidence 5 4667999999999999999876 77899999998765332222221111 113577889998 8999999999999
Q ss_pred EEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEECCCcEEEEEcCCCceE-EeeccccccCCCCccccccceEEE
Q 001363 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEASNLEVQ-CRILSTAYLRPTTSCLHVYPHAIA 1037 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 1037 (1092)
..||+++..+...+..+|...|..+.|.|+.+ +|+||+.||.|++||.+.-+.. ..+. .|..-|+ ++.
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~--------~HsHWvW--~VR 265 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP--------GHSHWVW--AVR 265 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC--------CCceEEE--EEE
Confidence 99999999998888899999999999999876 5789999999999999865443 2221 3455555 788
Q ss_pred ECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 1038 AHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1038 ~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
|+|-..+++++|+.|..|.+|.....
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred ecCccceEEEecCCCceeEEEecccc
Confidence 99877799999999999999986543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-16 Score=147.50 Aligned_cols=287 Identities=16% Similarity=0.130 Sum_probs=198.8
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
++.+|.+.|+++.|-.+++ |.+|...|.|++|++.+...+. .++ .|...|+.+.-.|++. +.+-+.|+.+.+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~l 81 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLIL 81 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEE
Confidence 3778999999999988776 8899999999999999976554 455 5677899999999865 899999999999
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccC-------CccEEEEEecCCe-EEEEEcCCCCceEEec----CCCCceEEEEE
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKE-------NIHFIFSISVDGK-IKAWLYDSLGARVDYD----APGLGCTRMAY 537 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~-------~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~----~~~~~i~~~~~ 537 (1092)
|++.-+..+. .|.-.++++.|.+.. ..+.++.-+.... +++-|......+.... ...+.+.+..+
T Consensus 82 w~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 82 WTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 9988765432 244445555443211 0011121111100 1122221111122111 12234555443
Q ss_pred c-cCCCE-EEEEecCCCCceeEEEEeCCCCeEEE----------EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 538 S-ANGRR-LFSCGTSKEGESFLVEWNESEGAIKR----------TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 538 s-~dg~~-l~~~~~~~~~~~~i~iwd~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1092)
. .++.+ ++.++ .+.+.+.+||+.++..+- ....|. ++|.++.+.+.-..=++|+.+..+..|
T Consensus 159 ~~~c~s~~lllaG---yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 159 DHACGSTFLLLAG---YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred cccccceEEEEEe---ccCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceee
Confidence 2 23444 33333 236779999999984432 233444 899999998877777888888889999
Q ss_pred ECCC--CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccc
Q 001363 606 DMNK--VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 606 d~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1092)
+++. +.+.......-..+.+..+..-||++.+|+++.|+.||||+..+.+++..++-|...|.+++|+
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs---------- 302 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS---------- 302 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC----------
Confidence 8764 3332221111223568899999999999999999999999999999999999999999999997
Q ss_pred cCCceeecCCCCCCCccceeeccccccceecc
Q 001363 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~ 715 (1092)
|+...++.++.|+.|.+|++
T Consensus 303 ------------pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 ------------PDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------------CCCchhhhccCCceEEeeec
Confidence 66778899999999999985
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=159.39 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=164.5
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001363 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
.+++|+.+|..++++. ||++|||+..+...+.....|..+|.++.||| |+++|++-+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999988888888888999999999999 99999999999 899999999977776653
Q ss_pred --ccCCeEEEEEcCCC-----CEEEEEeCCCcEEEEEcCCCceeee-eeeecCCCCcCCCCCceEEEEccCCCEEEE-Ee
Q 001363 885 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 955 (1092)
Q Consensus 885 --h~~~V~~l~~spdg-----~~l~s~s~Dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~ 955 (1092)
-......+.|+.|+ ..++....-+.|+.|++........ +..+....+. .|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence 23356678898887 4444555667788888765443111 1112222222 5999999999999999 58
Q ss_pred CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001363 956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 956 d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
||.|-|++..+.+++......|...|+.+.|+||.+++++.+.|..+.|..+.-.
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9999999999999999888899999999999999999999999999999887763
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.8e-15 Score=164.15 Aligned_cols=303 Identities=17% Similarity=0.205 Sum_probs=208.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-CCCCCceEEEcc--CCCEEEEEeCCCeEEEEECCCCc
Q 001363 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNK--NGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
.+...+.|+|-...++++.+.-.|+|||.+.++.+..+.... ....|..+.+-. |..++.+++.||.|+||+--...
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 345677889988999999988899999999999988876542 223467777654 56678888888888888643210
Q ss_pred eeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccc
Q 001363 656 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 735 (1092)
Q Consensus 656 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~ 735 (1092)
. +...++++
T Consensus 1145 ~----------------------------------------~~~eLVTa------------------------------- 1153 (1387)
T KOG1517|consen 1145 W----------------------------------------KKPELVTA------------------------------- 1153 (1387)
T ss_pred c----------------------------------------CCceeEEe-------------------------------
Confidence 0 00001111
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
|++=...+.+...-| .-+.|-....
T Consensus 1154 ------w~~Ls~~~~~~r~~~-------------------------------------------------~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1154 ------WSSLSDQLPGARGTG-------------------------------------------------LVVDWQQQSG 1178 (1387)
T ss_pred ------eccccccCccCCCCC-------------------------------------------------eeeehhhhCC
Confidence 110000000011111 1123333333
Q ss_pred EEEEEe-CCeEEEEEcCCceeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc---eeeEeeccccCC--
Q 001363 816 YLFSAS-GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR-- 888 (1092)
Q Consensus 816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~-- 888 (1092)
+|++++ -..|+|||.........+.. ....++++.-+...|+++++|..||.|++||.+.. ..+...+.|+..
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 444444 47899999988777776654 34567888776656799999999999999998764 356778889988
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCc
Q 001363 889 VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 967 (1092)
Q Consensus 889 V~~l~~spdg~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~ 967 (1092)
|..+.+-+.|- .|++|+.||.|++||+..........+ ..+...++..+++..+++...+|+|+.+.|+||++..
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G- 1334 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG- 1334 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eeccccCccceeeeeccCCCeeeecCcceEEEEecCh-
Confidence 99999988764 499999999999999987432221111 1222222358999999999999998779999999863
Q ss_pred eeeeee------ccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 968 TCLKQW------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 968 ~~~~~~------~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
+.+..+ .....+.+.+++|.|---+||+|+.|.+|.||....+.
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 333221 11236778999999999999999999999999877654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-14 Score=138.81 Aligned_cols=242 Identities=13% Similarity=0.141 Sum_probs=174.4
Q ss_pred CCCCCeeEEEEecCCC----EEEEEeCCeEEEEEcCCce--e--eEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001363 800 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMTFK--T--ILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS 866 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~----~l~~~sdg~i~iwd~~~~~--~--~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1092)
.|..+++.+.|.|+.+ -++..++..+|+|.+...+ . ...+ ..+..++++..|+.-+.+++.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 4899999999999874 2333456789999987322 1 1112 235568999999987889999999999
Q ss_pred cEEEEEcCCce---eeEeeccccCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEE
Q 001363 867 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942 (1092)
Q Consensus 867 ~v~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 942 (1092)
+..|||++++. +..+|-+|..+|..++|+.++ +.+||+|.||.||++|+...+-. ..+...... ..+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~~---~~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPSP---STPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCCC---CCcceee
Confidence 99999999863 467888999999999999865 68999999999999999874422 233222221 1357889
Q ss_pred EEccCC-CEEEE-EeC-CcEEEEEcCCceeeeeeccCCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 943 QFHKDQ-TRFLL-VHE-THLAIYEAEELTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 943 ~~s~dg-~~la~-~~d-~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
+|++.. +++|+ +.| ..|.|.|++.....-.-+.+|.+.|..++|.|. +..|.|+|.|..+.+||+...-......+
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 998755 56777 444 579999998655444447789999999999995 46899999999999999987543211121
Q ss_pred ccccCCCCccccccceEEEECCCCCCEEEEEeC
Q 001363 1019 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1051 (1092)
Q Consensus 1019 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~ 1051 (1092)
..... .++.|. .+.|+|..++.++.+..
T Consensus 329 ilay~---a~~EVN--qi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 329 ILAYT---AGGEVN--QIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhhhh---ccceee--eeeecccCCCEEEEEec
Confidence 11111 134565 45677655677776654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-14 Score=160.64 Aligned_cols=256 Identities=13% Similarity=0.107 Sum_probs=181.6
Q ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCC----CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc
Q 001363 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 466 (1092)
+..|...|..++.+++ +.++++||.||+|++|+...- ...+...++..-..++.++.+.+.+. .++.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 6679999999998875 499999999999999998632 22233333333466899999999999 6888899999
Q ss_pred EEEEECCC--Cce-----eEEEec-CCcCeEEEe-ecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEE
Q 001363 467 IKVWDAVT--GSR-----TYSFEG-HGAPVYSLC-PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRM 535 (1092)
Q Consensus 467 i~vwd~~~--~~~-----~~~~~~-~~~~v~~i~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~ 535 (1092)
|++.+++. .+. .+.... ..+.+.++. +........++.+..-+.|..||.+....... .....+-|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 99999876 221 111111 223444443 33222224788899999999999988766554 34456689999
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC---CCEEEEEe--CCCcEEEEECCCC
Q 001363 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV 610 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s--~dg~i~iwd~~~~ 610 (1092)
+.+|-+.+++.|.. .|.+.+||++=+..+....... ..++..+..+|- ....++++ ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999976 6679999999888887766443 356766666654 34555544 5788999999999
Q ss_pred ceEEEEeCCCCC-----------------CCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 611 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 611 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
.....+...... ......++...+..+.+|+.|..|+.||.....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 877766543110 011223344456788999999999999988653
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=165.48 Aligned_cols=235 Identities=12% Similarity=0.114 Sum_probs=162.6
Q ss_pred CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCccc
Q 001363 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR 432 (1092)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~ 432 (1092)
+..|.|||........ +..|...+.+++|||||++||+++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4689999987654321 56688899999999999999988643 479999998875322
Q ss_pred ceEEEcccccceeEEEEecCCCcEEEEE-EeCCCcEEEE--ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe-cC
Q 001363 433 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD 508 (1092)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s-~~~d~~i~vw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~d 508 (1092)
...+.+| ...++|+|||+ .|+. .+.+|.+.|| |+.+++ +..+..+...+....|++ ||+.|+..+ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence 2223333 44789999999 4554 4467765555 666665 455666777777788855 667666544 67
Q ss_pred CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 509 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
|...+|+++..........+.. ....|+|||++++..+. ..+.+||+.+++........ ....+.|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP 381 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP 381 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence 8889998765433222222222 45789999999988764 23777999988765333222 234578999
Q ss_pred CCCEEEEEeCCCcEEEEEC--CCCceEEEEeCCCCCCCCceEEEccC
Q 001363 589 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
++++++.++.++...+|.+ .+|.....+..+. ..+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 9999999999998888875 3577777776543 34778889874
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-12 Score=143.25 Aligned_cols=332 Identities=15% Similarity=0.161 Sum_probs=208.2
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001363 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 534 (1092)
.+++++-..++.|.|.|..+.+.+.++......-..+.+ ++|++++++++.||.|.++|+.+.+....+.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 346677788999999999999999999865544344555 5688899999999999999999999777776544 5678
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK 609 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~ 609 (1092)
+++|+||++++++... .+.+.++|..+.+.++.+..... ....+.++..+|....++..- +.+.|.+-|...
T Consensus 83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999999987642 56799999999999988765431 124577888888888666554 458888888877
Q ss_pred CceEE--EEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCC
Q 001363 610 VQLLT--TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 610 ~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
.+.+. .+... .......|+|++++++++ ..+..|.++|..+++....+.....
T Consensus 160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~--------------------- 215 (369)
T PF02239_consen 160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK--------------------- 215 (369)
T ss_dssp SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS---------------------
T ss_pred ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc---------------------
Confidence 65443 33322 235689999999988775 4467888999887654432221000
Q ss_pred ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001363 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~ 766 (1092)
.|..+...+ ..|..- .+|.
T Consensus 216 ---------------------------------------------p~~~~~~~~-php~~g-----------~vw~---- 234 (369)
T PF02239_consen 216 ---------------------------------------------PHPGPGANF-PHPGFG-----------PVWA---- 234 (369)
T ss_dssp ---------------------------------------------BEETTEEEE-EETTTE-----------EEEE----
T ss_pred ---------------------------------------------ccccccccc-cCCCcc-----------eEEe----
Confidence 011122111 111111 0111
Q ss_pred CcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE-EEeCCeEEEEEcCCceeeEEecCCCCC
Q 001363 767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SASGGVISLYIVMTFKTILTIMPPSPT 845 (1092)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~-~~sdg~i~iwd~~~~~~~~~~~~~~~~ 845 (1092)
.+..+...+ ..+.+.+.+||..+++.++++......
T Consensus 235 -------------------------------------------~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 235 -------------------------------------------TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp -------------------------------------------EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred -------------------------------------------eccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence 111122221 122345567888889999998876666
Q ss_pred eEEEEEcCCCCCEEEEE----eCCCcEEEEEcCCceeeEeecccc-CCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCC
Q 001363 846 ATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGD--AQIFVWDVDGW 918 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~s~D--g~I~iwd~~~~ 918 (1092)
.-+..+| +++++.+. ...++|.++|.++.+.+..+.... ..+..+.|++||+.+..+..+ +.|.|||..+.
T Consensus 272 -lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 272 -LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp ---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred -ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 7788899 88899887 455799999999998888876433 358999999999977655443 36999999997
Q ss_pred ceee
Q 001363 919 GIQT 922 (1092)
Q Consensus 919 ~~~~ 922 (1092)
+...
T Consensus 350 ~~~~ 353 (369)
T PF02239_consen 350 KEKK 353 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7554
|
... |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-13 Score=147.87 Aligned_cols=318 Identities=10% Similarity=0.130 Sum_probs=201.8
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
++.|.+.|..+.+.+..+.... ..-..+.++||++++++++.||.|.++|+.+++.+.++..... ...+++++|
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~D 88 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSPD 88 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE--T
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcCC
Confidence 6679999999999999998644 3345578999999999999999999999999999999976533 578999999
Q ss_pred CCEEEEEe-CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 634 GTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 634 ~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
|++++++. ..+.+.++|..+.+.+..+.......
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~--------------------------------------------- 123 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV--------------------------------------------- 123 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---------------------------------------------
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccc---------------------------------------------
Confidence 99998775 58999999999887776654211100
Q ss_pred eccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeEEEeecCCCcCcCcccccccCCccccCCCCCce
Q 001363 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791 (1092)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 791 (1092)
.....++.++..++....++..-.+ +.+.+-|+.... .+
T Consensus 124 ------------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~----------------------~~ 163 (369)
T PF02239_consen 124 ------------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK----------------------NL 163 (369)
T ss_dssp ------------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS----------------------CE
T ss_pred ------------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc----------------------cc
Confidence 0023456777778888766655554 666555543321 01
Q ss_pred eeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCC---------CC
Q 001363 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----PSPTATSLAFNPH---------DN 856 (1092)
Q Consensus 792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~---------d~ 856 (1092)
....+ ..........|+|++++++++. .+.|.++|.++++.+..+.. |..+...+- +|. .+
T Consensus 164 ~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~~ 239 (369)
T PF02239_consen 164 KVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP-HPGFGPVWATSGLG 239 (369)
T ss_dssp EEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBSS
T ss_pred ceeee---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccccc-CCCcceEEeecccc
Confidence 11111 1234556789999999988875 57899999999988766532 333333221 221 22
Q ss_pred CEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE----eCCCcEEEEEcCCCceeeeeeeecCCCC
Q 001363 857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS----GGDAQIFVWDVDGWGIQTCRSLQTPDGV 932 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 932 (1092)
...++.-....+.+|+..+.+.++++....++ .-+.-+||++++... ...++|.++|.++.+... .+....+
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~- 315 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG- 315 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT-
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC-
Confidence 33323333345667899999999999977666 778889999999987 455889999999854221 1211111
Q ss_pred cCCCCCceEEEEccCCCEEEEE---eCCcEEEEEcCCceeeeeec
Q 001363 933 MTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWF 974 (1092)
Q Consensus 933 ~~~~~~v~~l~~s~dg~~la~~---~d~~i~lwd~~~~~~~~~~~ 974 (1092)
..+..+.|++||+.+-++ .++.|.+||..+.+.+..+.
T Consensus 316 ----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 316 ----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp ------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 137899999999987763 34489999999999888743
|
... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=153.56 Aligned_cols=197 Identities=21% Similarity=0.208 Sum_probs=151.0
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001363 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 926 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 926 (1092)
.+++|+. ++..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||++.++-... -
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence 7899999 89999999999999999999888888888899999999999999999999999 79999999973221 1
Q ss_pred ecCCCCcCCCCCceEEEEccCC---CE-EEEE--eCCcEEEEEcCCcee-----eeeeccCCCCCEEEEEEecCCCEEEE
Q 001363 927 QTPDGVMTLAPSETHIQFHKDQ---TR-FLLV--HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 995 (1092)
Q Consensus 927 ~~~~~~~~~~~~v~~l~~s~dg---~~-la~~--~d~~i~lwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~t 995 (1092)
.++.+.. .....+.|+.|+ .+ +++. .-+.|..|++..... .++.. .....|++++.|+||++++.
T Consensus 223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence 1111211 247789999888 33 3332 335677766643222 11111 12457999999999999999
Q ss_pred EECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001363 996 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 996 ~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
|+.||.|.|++..+.+...-+. ..|..-| ..+.|+| |.+++++.+.|.+..+..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk-------~aH~~~V--T~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK-------EAHLGFV--TGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh-------hhheeee--eeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999998887663332 2245544 4789999 689999999999999998865
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-14 Score=159.05 Aligned_cols=297 Identities=14% Similarity=0.177 Sum_probs=207.0
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CCC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGS 409 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~ 409 (1092)
+....-..+.|+|-.. .++++...-.|+|||.+.++.+..+.- -......|+.+.+-. |..
T Consensus 1062 ~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred cCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccchh
Confidence 4344567788999887 567777667899999999988754211 112346788888876 677
Q ss_pred EEEEEeCCCEEEEEEccCC--C---cccceEEEccc----ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 410 LLGVAYSKHIVQLYAYHGG--S---DARQQLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~--~---~~~~~~~~~~h----~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
++++|+.||.|+||+--.. + .+.....+.++ .+.=.-+.|-.... .|+++|.-..|+|||.....+++.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEee
Confidence 9999999999999975322 1 11111112221 11113356766665 566666688999999999888877
Q ss_pred Eec-CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCc--eEEEEEccCCCE-EEEEecCCCC
Q 001363 481 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKEG 553 (1092)
Q Consensus 481 ~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~--i~~~~~s~dg~~-l~~~~~~~~~ 553 (1092)
+.. ....|+++.-... .|..+++|..||.|++||.+.... +..+..|... |..+.+.+.|-. |++++.
T Consensus 1203 iP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---- 1277 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---- 1277 (1387)
T ss_pred cccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----
Confidence 743 4456777765433 368999999999999999876543 4456666665 999999887765 888876
Q ss_pred ceeEEEEeCCCCeEEEEEe--eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----CCCCCCc
Q 001363 554 ESFLVEWNESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENP 626 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~ 626 (1092)
+|.|++||++.......+. .|..-.+..+++..++....+++|+. +.|.||++... .+..+..+ .....+.
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcc
Confidence 5559999998752222221 11101124899999999999999988 99999998643 33333221 1234578
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 627 RICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
+++|+|..-++|+|+.|..|.||.....
T Consensus 1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeecchhHhhhhccCCceEEEeecCCc
Confidence 9999999999999999999999987654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-14 Score=156.94 Aligned_cols=252 Identities=17% Similarity=0.157 Sum_probs=181.7
Q ss_pred CCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcc--cc-eEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 395 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 395 h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~--~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
-...|.|++|+| +..++|.|..+|.|.+||+..+... .. ......|..+++.+.|..+-...-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567999999999 6778888899999999999877651 11 1123468899999999776442249999999999999
Q ss_pred ECCCCce------eEEEe------cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCC
Q 001363 471 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL 530 (1092)
Q Consensus 471 d~~~~~~------~~~~~------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~ 530 (1092)
+++.-.. ..... .-...++++.|.+. +-..++.|+.+|.|.--.....+. ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 12345778888765 446799999999988733322221 225566778
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCE-EEEEeCCCcEEEEECC
Q 001363 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~s~dg~i~iwd~~ 608 (1092)
+|.++.++|-+..++..+. +-++++|... ....+..+..+. ..+.+++|+|.... ++++..||.+.+||+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999998876665543 6679999987 555655565555 66999999998755 4557789999999997
Q ss_pred CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
....-......-.....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 473 ~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 473 QDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 5443332222222345678888999999999999999999998744
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-12 Score=142.66 Aligned_cols=199 Identities=16% Similarity=0.161 Sum_probs=156.5
Q ss_pred ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe--EEEeecccCCccEEEEEecCCeEEEEEcCCCC
Q 001363 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 520 (1092)
.|....+..+.+ .++.+..++.+.+||...+..+..+....... .++.+-.+.+.-++++|+.-+.|.+|++....
T Consensus 89 wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 89 WIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344455666666 57777778899999998887776665332221 11222234455789999999999999998555
Q ss_pred ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001363 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1092)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1092)
....+.+|.+.|.++.++.||+++++++. +..+++|++.+++... ..-+|. ..+..++|.|+ .++++++|
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~~fgHs---aRvw~~~~~~n--~i~t~ged 237 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCTGFGHS---ARVWACCFLPN--RIITVGED 237 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCccccccc---ceeEEEEeccc--eeEEeccc
Confidence 55578999999999999999999999987 6669999999998877 556666 89999999998 89999999
Q ss_pred CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 600 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
-+.++|+.+ +..+..+..|.. ..+..++..++...+++++.|+.+++|++...
T Consensus 238 ctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 238 CTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 999999765 444446666544 45899999999999999999999999998753
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-10 Score=120.64 Aligned_cols=103 Identities=11% Similarity=0.069 Sum_probs=81.6
Q ss_pred CCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC----cEEEEEcCCc
Q 001363 802 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSS 876 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~ 876 (1092)
-+.|.++..++||++++++.+ ..+.+.|+.++.....-+...+-|+.++|+| +++++|.+--+| .|++||+.++
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCC
Confidence 456778888999998888876 7789999999887666666778899999999 999999988777 7899999998
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeC
Q 001363 877 EVISKLEGHSKRVTGLVFSDALNILVSSGG 906 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 906 (1092)
+....-. ..+.=.+-+|.||+++|..-+.
T Consensus 480 Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 480 KIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 8665443 2333456789999999876553
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-14 Score=162.12 Aligned_cols=232 Identities=18% Similarity=0.195 Sum_probs=152.5
Q ss_pred ccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCC---CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC
Q 001363 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h 395 (1092)
+.+......+.+..|...+..++|||||++ ||..+.+ ..|.+||+.+++...... +.+|
T Consensus 188 i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~ 249 (429)
T PRK01742 188 VADYDGFNQFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH 249 (429)
T ss_pred EECCCCCCceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc
Confidence 344444456778888889999999999996 4554432 469999999886433111 2233
Q ss_pred CCcEEEEEECCCCCEEEEEe-CCCEEEEE--EccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001363 396 GVSVNRVVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
...++|||||++|++++ .+|.+.|| |+.++.. . .+..+...+...+|+|||+. +++++..++...||++
T Consensus 250 ---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 250 ---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRM 321 (429)
T ss_pred ---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEE
Confidence 34689999999998875 57765555 6655542 2 45567777889999999995 3334456788888876
Q ss_pred CCC-ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 473 VTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 473 ~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
... .....+ .+.. ....| ++||+.|+..+.++ +.+||+.++........ .....+.|+|||++++.++.++
T Consensus 322 ~~~~~~~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 322 SASGGGASLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred ECCCCCeEEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCC
Confidence 532 222333 3433 34455 55778888887765 45589887765433222 2335678999999999987633
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
. ...+.+++ .+|..++.+..+. +.+...+|+|-
T Consensus 394 ~-~~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 394 L-GKVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred C-ceEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence 2 22333444 3577777787666 67788888874
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-09 Score=131.77 Aligned_cols=510 Identities=12% Similarity=0.131 Sum_probs=287.5
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEE----EccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
...+.|.++.|-+|...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 355789999999999999999999999999 444422 11 2334566899999999999 5666666788877
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEc----------CCCCc----eEEecCCCCceEEE
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY----------DSLGA----RVDYDAPGLGCTRM 535 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~----------~~~~~----~~~~~~~~~~i~~~ 535 (1092)
-+ .+-..+....-+..... ....++.+..+.=.-+.= +.... ...+. ....-..+
T Consensus 147 mt-~~fd~i~E~~l~~~~~~---------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFG---------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRI 215 (928)
T ss_pred Ee-ccceEEEEeecCccccC---------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEE
Confidence 65 55555554443321110 012222221111000000 00000 00111 22345679
Q ss_pred EEccCCCEEEEEecCCC-C-ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCC
Q 001363 536 AYSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKV 610 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~ 610 (1092)
+|-.||.++++.+.+.. + ...+++|+.. |.+..+..... +--.+++|-|.|+.+++... ...|.+|.. +|
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NG 290 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NG 290 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CC
Confidence 99999999998876333 2 5889999965 76655554333 45567899999999888653 445667764 44
Q ss_pred ceEEEEeCC--CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCce
Q 001363 611 QLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1092)
Q Consensus 611 ~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 688 (1092)
-.-..+... .....|..+.|++|+..||+...|. |.+|...+-...-...- .+.
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei--------~~~--------------- 346 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI--------RFS--------------- 346 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE--------Ecc---------------
Confidence 444444433 2334689999999999999988765 99998876643322110 000
Q ss_pred eecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCC-cEEEEeecCCeeEEEeecCCC
Q 001363 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRND 767 (1092)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~~w~~~~~~ 767 (1092)
....+..+.|+|.. ..|...+.+|.+..+++..
T Consensus 347 --------------------------------------------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~-- 380 (928)
T PF04762_consen 347 --------------------------------------------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW-- 380 (928)
T ss_pred --------------------------------------------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE--
Confidence 01112225555533 3355555556666555421
Q ss_pred cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-CCCEEEEEeCCeEEEEEcCCceee-----EEecC
Q 001363 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMP 841 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~-dg~~l~~~sdg~i~iwd~~~~~~~-----~~~~~ 841 (1092)
++..+. ..+| |...+++..+.++.+-.+...-.. ..+.
T Consensus 381 ----------------~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~- 424 (928)
T PF04762_consen 381 ----------------DVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE- 424 (928)
T ss_pred ----------------EEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-
Confidence 111110 0111 222344444556777666543221 2222
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee--------eEeec----------cccCCeEEEEEcCCCCEEEE
Q 001363 842 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------ISKLE----------GHSKRVTGLVFSDALNILVS 903 (1092)
Q Consensus 842 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spdg~~l~s 903 (1092)
....|.+++|++ ++..+|+-..||.+.+|....... ...+. .-...+..++|..+...++.
T Consensus 425 ~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (928)
T PF04762_consen 425 LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVL 503 (928)
T ss_pred CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEE
Confidence 346899999999 677799999999999998644321 11111 12345788899888777776
Q ss_pred EeCC---CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCC
Q 001363 904 SGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSV 979 (1092)
Q Consensus 904 ~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~ 979 (1092)
...+ ..+.++++...+... ......... ..+..+...++...++. ..+|.+..++..........++. .-
T Consensus 504 ~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c 577 (928)
T PF04762_consen 504 SDSDSNQSKIVLVDIDDSENSA--SVESSTEVD---GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PC 577 (928)
T ss_pred EecCcccceEEEEEeccCCCce--eEEEEeccC---ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CC
Confidence 6654 578888885432111 111111111 13455555666553444 67888887766543322211211 22
Q ss_pred CEEEEEEecCCC---EEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEE
Q 001363 980 PISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus 980 ~v~~l~fs~dg~---~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~ 1056 (1092)
....++...+.. .++.-+..|.+++ ++..++ ..+. +++.+ +.+|+.......++
T Consensus 578 ~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la--------------~~~t--SF~v~---~~~Ll~TT~~h~l~ 634 (928)
T PF04762_consen 578 PWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA--------------SNCT--SFAVT---DSFLLFTTTQHTLK 634 (928)
T ss_pred cEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe--------------cCCc--eEEEE---cCEEEEEecCceEE
Confidence 223333333333 3443334444443 344431 1233 44455 36788888889999
Q ss_pred EEecC
Q 001363 1057 VIEPN 1061 (1092)
Q Consensus 1057 ~w~~~ 1061 (1092)
+.++.
T Consensus 635 fv~L~ 639 (928)
T PF04762_consen 635 FVHLN 639 (928)
T ss_pred EEECc
Confidence 99997
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.9e-14 Score=145.33 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=126.8
Q ss_pred ecCCCEEEEEe-CCeEEEEEcCCceeeEEec----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC----------
Q 001363 811 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 875 (1092)
Q Consensus 811 s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---------- 875 (1092)
.+.+--+.++- -|.+.+.|....+..+.+. -....++|+.|-|.+...++++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45665666665 4888888866522211111 12368999999997777888889999999997531
Q ss_pred ----ce--------------eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCC
Q 001363 876 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 937 (1092)
Q Consensus 876 ----~~--------------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 937 (1092)
+. ++..+.--.+.|...+|||||++||+.|.||.+||+|+.+.+ ++....... +
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence 11 122222234578889999999999999999999999999844 333333333 3
Q ss_pred CceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEec
Q 001363 938 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC 988 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~ 988 (1092)
...+++|||||++|++ |.|.-|.||....++.+.. -.+|...|+.++|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence 7899999999999999 6889999999999998886 678999999999987
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-13 Score=132.12 Aligned_cols=288 Identities=16% Similarity=0.170 Sum_probs=190.3
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCCEEEEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~ 414 (1092)
.+..++|++.-. -+|++..|-.|++||-.....-.. -......|+|++|-| .++-|++|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~L-------------------ks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTKL-------------------KSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCCCCCcee-------------------cchhhcceeEEEeccCCcceeeee
Confidence 677888888543 478888999999999776322211 112456899999999 46778888
Q ss_pred eCCCEEEEEEccCCCcc-----------cceEEEcccccceeEEEEecCCCcEEEEEEeC-CCcEEEEECCCCceeEEEe
Q 001363 415 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~ 482 (1092)
+..| |.||....-... .+...-.+| .+|+++.|.+||. .+++++. |..|.|||..+|..+....
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 8877 999987532111 111223455 5899999999999 6787774 6689999999998876554
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE--
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW-- 560 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw-- 560 (1092)
...+.+.-+.|+| |+.+|+.+.-|+..++|+....-.........+.|...+|+|+|++|+..... ...++-.
T Consensus 236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence 4556787888855 77899999999999999655443333344444589999999999987765531 2223221
Q ss_pred eCCCCeE-----------E------EEEeeccccCCceEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCceEEE
Q 001363 561 NESEGAI-----------K------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------VIKIWDMNKVQLLTT 615 (1092)
Q Consensus 561 d~~~~~~-----------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------~i~iwd~~~~~~~~~ 615 (1092)
+-+.+.. + ....+...-.+.+.+++|.|.|.++++.-..+ .|.+||...--.+..
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 1111110 0 11112122246789999999999999865333 366788765444433
Q ss_pred EeC-CCCCCCCceEEEcc---CCCEEEEEeCCCeEEEEECC
Q 001363 616 IDA-GGGLPENPRICFNK---NGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 616 ~~~-~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~ 652 (1092)
... .........++|+| ++.+|.++-..|.+.-|.+.
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 311 11112245677776 67888888888888777654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-11 Score=139.06 Aligned_cols=200 Identities=15% Similarity=0.153 Sum_probs=151.3
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|....+.-+.+ .++.+..++.+.+||...+....... .+.+.. -....-+.++++.-++++|+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~er~~--------l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDERCT--------LYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCceEE--------EEeEEEEeccCcEEEEEecc
Confidence 344445555555 57778888999999998876664210 000000 01223355778888999999
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE-EEecCCcCeEEEeec
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPH 494 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~i~~~ 494 (1092)
.-+.|.+|+......- ..+.||.+.|.++.|+.||+ ++++.|.|.++++|++++++.+. ..-+|+..|..++|.
T Consensus 153 v~~~iivW~~~~dn~p---~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKP---IRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccCCc---ceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 9999999999833211 14789999999999999999 89999999999999999998876 667899999999996
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
+. .+++++.|-+.++|+.+..... .+..|. ..+..++..++...+++++. ++.+++|+....
T Consensus 228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 53 8999999999999976544333 555554 47899999998888888886 666999987643
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-12 Score=125.58 Aligned_cols=239 Identities=14% Similarity=0.203 Sum_probs=169.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEccccc--ceeEEEEecCCCcEEEEEEeC-----CCcEEEE
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQISVITCGD-----DKTIKVW 470 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~s~d~~~l~l~s~~~-----d~~i~vw 470 (1092)
...+++|+.|..-+++|..+| .+||+.+--+... .-..+.+ .+..+-| -.+.+.|+-|+. -..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 445599999999999998888 9999987522211 1111222 2222333 234334444443 2479999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCC--CceEEEEEccCCCEEEEE
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~--~~i~~~~~s~dg~~l~~~ 547 (1092)
|=...+++.++. ...+|.++.+... .|++. ..+.|.||.+. ..+....+.... ....+++-..+...|+.-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 977788888886 7789999998542 34443 56789999987 444444443322 233333333333444443
Q ss_pred ecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEEEeCCCCCCC
Q 001363 548 GTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPE 624 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~ 624 (1092)
+ ...|.|++-|+...+. ...+..|. ..|.+++.+.+|..++++|..|+ |||||..+|..+..+........
T Consensus 155 g---~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 155 G---FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred C---CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 3 2357799999876655 46677777 99999999999999999999988 79999999999999987666678
Q ss_pred CceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 625 NPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|.+++|||+..+||++++.|++.|+.+...
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999999999999998764
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=157.88 Aligned_cols=362 Identities=12% Similarity=0.078 Sum_probs=223.8
Q ss_pred CceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCc---cccccccCC
Q 001363 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS---ECQSLLLPS 730 (1092)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~---~~~~~~~~~ 730 (1092)
|..+..+..|...+..++.+ ++++.++++|+.||+|++|+...-... ....+.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s---------------------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-- 1094 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVS---------------------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-- 1094 (1431)
T ss_pred ceEeehhhhccccccceeec---------------------CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE--
Confidence 34555666677777666666 577899999999999999996532222 1111111
Q ss_pred ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
....+++.++...+.+..+++++.||.|++.++..... ... .+.+.....+. ....-+..-+|
T Consensus 1095 s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~----~~~-----------~~~~~ri~n~~--~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1095 SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV----SKR-----------VATQVRIPNLK--KDGVVVSMHAF 1157 (1431)
T ss_pred eccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc----ccc-----------eeeeeeccccc--CCCceEEeecc
Confidence 11467889999999999999999999999998865311 000 00111111111 11222333333
Q ss_pred ecC-CC-EEEEEeC-CeEEEEEcCCceeeEEec--CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec-c
Q 001363 811 SKN-DA-YLFSASG-GVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-G 884 (1092)
Q Consensus 811 s~d-g~-~l~~~sd-g~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~ 884 (1092)
... +. .++.+.+ +.|..||+.......+++ ...+.|++++.+| .+.++++|+..|.+.+||++-+.++..+. +
T Consensus 1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCc
Confidence 332 23 5555554 889999998776665554 3457899999999 89999999999999999999988887775 3
Q ss_pred ccCCeEEEEEcCCC---CEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCc-----------CCCCCceEEEEccCC
Q 001363 885 HSKRVTGLVFSDAL---NILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVM-----------TLAPSETHIQFHKDQ 948 (1092)
Q Consensus 885 h~~~V~~l~~spdg---~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~l~~s~dg 948 (1092)
+..+|..+...|-. ...++++ ..+.|.+|++.+|............... +........++...+
T Consensus 1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence 55788888877643 4555554 4678999999998655432222000000 000122334444445
Q ss_pred CEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcE-EEEEcC-----CCceEEeeccccc
Q 001363 949 TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEAS-----NLEVQCRILSTAY 1021 (1092)
Q Consensus 949 ~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i-~vwd~~-----~~~~~~~~~~~~~ 1021 (1092)
.++.+ ++|..|+.||....+...-...+.+.......++.+ .-++.++.--.. ...... .+...........
T Consensus 1317 ~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred ceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence 55666 789999999998665442222332333333333332 223333221000 111111 1222344455566
Q ss_pred cCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001363 1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1022 ~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
.++..|.++|..++....+ ..++++++.||.|.+|.
T Consensus 1396 ~ps~~H~d~Itdma~~~~~--q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSE--QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCcccccchhhhhhhhccC--ccEEEEecCCCeeeecC
Confidence 6777789999988888776 47999999999999994
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=150.46 Aligned_cols=245 Identities=13% Similarity=0.178 Sum_probs=170.5
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
..+.|.||++-|+|++|+.||. +|++||.|-.+.|||.-..+.+.. +-+||...|.++.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence 3477899999999999999998 899999999999999987766653 367899999999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEccCCC-------cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001363 406 P--DGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 406 p--dg~~las~~~d~~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
| +.+.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.+++.||+|+-+|++...
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence 9 57788999999999999998521 12223345679999999999999965 79999999999999987632
Q ss_pred -eeEE---------EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-----ecCCCCceEEEE-EccC
Q 001363 477 -RTYS---------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMA-YSAN 540 (1092)
Q Consensus 477 -~~~~---------~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~i~~~~-~s~d 540 (1092)
+-.. +...--...++.++|.. ..+|+.|+.|-..++||.+....... ...+.....++. |+|.
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 1111 11111234567777764 47999999999999999643221110 011111122222 2222
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001363 541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1092)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1092)
+- .. ..|..... ...++.++|+|+|.-++..-....|+++|+..++.....
T Consensus 261 hl----kn--------------~~gn~~~~-------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 261 HL----KN--------------SQGNLDRY-------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cc----cC--------------cccccccc-------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 21 00 00100000 023667899999988888766678999999887765544
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-13 Score=153.21 Aligned_cols=252 Identities=17% Similarity=0.201 Sum_probs=184.9
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCee--EEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC--C
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG--S 409 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~--~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg--~ 409 (1092)
..+|+|++|+|....++|.|..+|.|.+||+..+... ... ......|..+|+.+.|-.+- .
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l---------------s~~~~sh~~~v~~vvW~~~~~~~ 306 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL---------------SALEVSHSEPVTAVVWLQNEHNT 306 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc---------------ccccccCCcCeEEEEEeccCCCC
Confidence 3499999999998889999999999999999987652 211 11255699999999998754 4
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEE--c-------ccccceeEEEEecCCCcEEEEEEeCCCcEEEEE---CCCCc-
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEI--D-------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS- 476 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~--~-------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd---~~~~~- 476 (1092)
-+++++.||.|..|++..-........+ . .-...+++++|.+.... .++.|+.+|.|..=+ ...+.
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCccccc
Confidence 4999999999999988643321111011 1 12236899999988776 788899999988733 22222
Q ss_pred ----eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 477 ----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 477 ----~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.+..+..|.++|+++.++|-.. ..+.+++ |-++++|.-. ...+...+..+...+++++|||-...++++.
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~--- 460 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV--- 460 (555)
T ss_pred ccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---
Confidence 1335567889999999877653 3444444 9999999887 5566667777777799999999887777665
Q ss_pred CCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001363 552 EGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
+++|.+.+||+..... +.+..... .....+.|+++++.+++|...|++.+|++..
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 4578899999875432 22322222 5677788999999999999999999999864
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-14 Score=148.30 Aligned_cols=295 Identities=14% Similarity=0.144 Sum_probs=221.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
|.+|.+.|..|.|...|..|++|+.|..|.+||+.++...... ..||...|....|-|......+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 7789999999999999999999999999999999988755432 34899999888888865444799999999999876
Q ss_pred CC-CCce--eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCC---ceEEEEEccCCC
Q 001363 472 AV-TGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGL---GCTRMAYSANGR 542 (1092)
Q Consensus 472 ~~-~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~---~i~~~~~s~dg~ 542 (1092)
+. ++.+ ...+..|.++|.-++..|.. -.-|.+++.|+.+.-.|++.......+.. +.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 3433 24556799999999876643 35789999999999999987665433321 222 456788888776
Q ss_pred -EEEEEecCCCCceeEEEEeCCCCeE------EEEEeeccc---cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--C
Q 001363 543 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 610 (1092)
Q Consensus 543 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~ 610 (1092)
.+++++. +..+++||.+.-.. +..+..+.. ..-.|++++|+.++.-+++...|-.|+++...- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5556554 66788998764322 222222211 124589999998888888888899999995432 2
Q ss_pred ----------ceEEE-EeCCCCCCCCceEEE-ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcc
Q 001363 611 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 611 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
..+.. ..+|.....|..+-| -|...++++|++=|.|.||+-.+++.+..+.+-..-|.|+.-+|.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~--- 447 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH--- 447 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC---
Confidence 11222 455655555777765 578999999999999999999999999999988888888877754
Q ss_pred ccccccCCceeecCCCCCCCccceeeccccccceecc
Q 001363 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~ 715 (1092)
-..|++++-|..|+||..
T Consensus 448 -------------------~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 448 -------------------LPVLASSGIDHDVKIWTP 465 (559)
T ss_pred -------------------CchhhccCCccceeeecC
Confidence 455788889999999985
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-12 Score=136.88 Aligned_cols=510 Identities=12% Similarity=0.140 Sum_probs=302.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc------------ccceEEEcccccceeEEEEecCCCcEEEEEEe
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~ 462 (1092)
......|++|+....|+|+|+.||.+++-.+.+... +.--.++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 456788999999999999999999999998875422 111235789999999999999888 699999
Q ss_pred CCCcEEEEECCCCceeEEEe--cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC
Q 001363 463 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 540 (1092)
Q Consensus 463 ~d~~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d 540 (1092)
.+|.|.||-+-.|.-...+. .....|.+++| ..||..+.....||.|.+=.++..+ +.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence 99999999988876554332 24456788888 4577888888888888776554322 1111122223456889999
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCC-------eEEEEEeec-cccCCceEEEEEc--------CCCCEEEEEeCCCcEEE
Q 001363 541 GRRLFSCGTSKEGESFLVEWNESEG-------AIKRTYQGL-QLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~-~~~~~~v~~~~~~--------~~~~~l~~~s~dg~i~i 604 (1092)
.+.++.+-. ++.+.++|.... .+.....+. ......+..+.|. |+...++++-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 988877655 445888886532 111111111 1001224444443 57889999999999988
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe---------EEEEECCCCceeeecccccCceeeeeecCC
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR---------IKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~---------i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
-.-.+......+... ..+....|+++|..||+++.+.. |.+|. .-|..+..++.+..
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~---------- 309 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS---------- 309 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc----------
Confidence 765554433333322 34778899999999999987531 22221 11222333333333
Q ss_pred CccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC
Q 001363 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1092)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 755 (1092)
.|+++.|-..|-+++. .-|
T Consensus 310 ------------------------------------------------------------~It~lsWEg~gLriA~-Avd 328 (1189)
T KOG2041|consen 310 ------------------------------------------------------------CITGLSWEGTGLRIAI-AVD 328 (1189)
T ss_pred ------------------------------------------------------------eeeeeEEcCCceEEEE-Eec
Confidence 3444444443332222 222
Q ss_pred CeeEEEeecCCCc----------CcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001363 756 GVHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 824 (1092)
Q Consensus 756 g~i~~w~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~ 824 (1092)
+.|.+=++...-. ...+.......+.+||..+.+.... .-....+++++.+--.|+.-. ++.
T Consensus 329 sfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 329 SFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred ceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCC
Confidence 2333322211100 0011111123455677666553322 223455677776655555544 355
Q ss_pred EEEEEc-CCceeeEEec----------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee---------------
Q 001363 825 ISLYIV-MTFKTILTIM----------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------------- 878 (1092)
Q Consensus 825 i~iwd~-~~~~~~~~~~----------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------------- 878 (1092)
+.-++. ++...+..+. ..-..|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~ 479 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRF 479 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccc
Confidence 544422 1111111110 0001121111122 56677777765 477786532211
Q ss_pred -----------------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceE
Q 001363 879 -----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 879 -----------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1092)
..++.|..++|.+++.| .++|..+-..|.|.-+.+...-. .....-. ..+.+
T Consensus 480 h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l-----~n~y~~n----~~~y~ 548 (1189)
T KOG2041|consen 480 HGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVL-----TNSYPVN----PSIYS 548 (1189)
T ss_pred cCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceee-----eeccccC----chhee
Confidence 13455667788888876 57888899999999999987432 2222221 35889
Q ss_pred EEEccCCCEEEE-EeCCcEEEEEcC---CceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 942 IQFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 942 l~~s~dg~~la~-~~d~~i~lwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
++.+.+...+|+ -.-|.+.+.|+. +|..+.-+.......|+.+.|..|...|+.--....++|++-.
T Consensus 549 ~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgn 619 (1189)
T KOG2041|consen 549 IKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGN 619 (1189)
T ss_pred EeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCc
Confidence 999999999888 455777777765 4555554555567789999998887666655444556666533
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-12 Score=129.63 Aligned_cols=260 Identities=12% Similarity=0.114 Sum_probs=165.4
Q ss_pred cccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC
Q 001363 734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d 813 (1092)
...|++++|-|.+..-++.+..+.|.+|........ ...++ ..+..+... +..++| ..|+++.+.+|
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~-------~r~~~---~~s~~~~qv--l~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA-------NRNIR---MMSTHHLQV--LQDPGH-NPVTSMQWNED 206 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCccccc-------ccccc---cccccchhh--eeCCCC-ceeeEEEEcCC
Confidence 346788888887776777777778899986543210 00001 011111112 222335 78999999999
Q ss_pred CCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEE
Q 001363 814 DAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 814 g~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
|..+++++ +..|.|||..++..+.-.....+.++-+.||| |+.+|+.++-|+..++|+...........--.+.|+.
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 99999998 57899999999887766555567889999999 8999999999999999965543333333334568999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCce----------eeeeeee------cCCCCcCCCCCceEEEEccCCCEEEEEe
Q 001363 892 LVFSDALNILVSSGGDAQIFVWDVDGWGI----------QTCRSLQ------TPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 892 l~~spdg~~l~s~s~Dg~I~iwd~~~~~~----------~~~~~~~------~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
.+|+|+|.+|..+.. |.=++|.+.-.+. .....+. ...+.....+.+.+++|.|.|.+||+..
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999988765543 2334555432110 0001111 1112111225789999999999999953
Q ss_pred C---------CcEEEEEcCCceeeeeeccCC--CCCEEEEEEec---CCCEEEEEECCCcEEEEEcC
Q 001363 956 E---------THLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 956 d---------~~i~lwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
. ..|.+||....-.+...+.+- ......++|.| +|.+|..+=+-|.+.-|++.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2 236677776544333322221 22355567776 66777777677777777654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=128.77 Aligned_cols=241 Identities=12% Similarity=0.168 Sum_probs=169.1
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCC--CeEEEEEcCCCCCEEE-EEeCC------CcEEEEEc
Q 001363 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIA-IGMDD------STILIYNA 873 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la-sg~~d------g~v~iwd~ 873 (1092)
....+++|.-|...++++.+...+||+++..+.....+.+.+ .+..+-|- .++|| +|+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999999999999987554333222222 33334443 23444 44433 38999997
Q ss_pred CCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 874 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 874 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
...+++.++. ...+|.++.+++| .++.. -.+.|+||.+...-.. ...+.+..... ...+++=.....+||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~-l~~~et~~NPk----GlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL-LHVIETRSNPK----GLCSLCPTSNKSLLAF 153 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh-eeeeecccCCC----ceEeecCCCCceEEEc
Confidence 6677888877 7788999999876 55544 3567999999853211 12222222111 1222222233344554
Q ss_pred -E-eCCcEEEEEcCCcee-eeeeccCCCCCEEEEEEecCCCEEEEEECCCc-EEEEEcCCCceEEeeccccccCCCCccc
Q 001363 954 -V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCL 1029 (1092)
Q Consensus 954 -~-~d~~i~lwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1092)
| .-|+|.|-|+...+. ......+|.+.|.+++.+-+|..+||+|..|+ |||||..+|+.++.++... . ..
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d-----~A 227 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-D-----RA 227 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-c-----hh
Confidence 4 448999999986665 23457789999999999999999999999998 8999999999999987222 1 22
Q ss_pred cccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1030 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1030 ~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
.|+ +++|+| +..+||++++-|+|++|.+.+..
T Consensus 228 ~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 345 889999 58999999999999999997755
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.6e-13 Score=129.91 Aligned_cols=232 Identities=15% Similarity=0.177 Sum_probs=175.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC-C
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V 473 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~ 473 (1092)
--.+|+|.||++|+..+|++-....|.||............++..|...|+.++|+|.+. .|++|+.|...+||.. .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346999999999999999999999999999998887777789999999999999999998 6999999999999997 3
Q ss_pred CC--ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEccCCCEEEEE
Q 001363 474 TG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 474 ~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
.+ ++.-.+..+....+++.|+|.+ ..+++|+....|.||=++....-. .-......|.++.|+|++-+|+++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 33 3344556688999999997654 689999999999999777654432 233445678999999999999998
Q ss_pred ecCCCCceeEEEEeC-----CC-------------CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001363 548 GTSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
+. |+..+++.. +. |+++..+.. ..+.+..+.|+|+|+.|+-.+.|.++.+-|...
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 86 344555532 11 222333332 247899999999999999999999999999877
Q ss_pred Cc-eEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001363 610 VQ-LLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 610 ~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
.. .+....... -+..++.|-.+...+++
T Consensus 238 p~~~v~~~~~~~--lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 238 PSERVQSVATAQ--LPLLSVSWISENSVVAA 266 (361)
T ss_pred Cchhccchhhcc--CCceeeEeecCCceeec
Confidence 65 233332221 23456666554443333
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-15 Score=161.57 Aligned_cols=343 Identities=18% Similarity=0.202 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCcCcccccccc
Q 001363 171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVAL 250 (1092)
Q Consensus 171 rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1092)
-|..|+-|.+++|+.+|+.|.++.+++|||..|.|++ |.+..+++-++..+. +.....
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl----~~rel~--- 1071 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRL----GTRELQ--- 1071 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcc----cchhhc---
Confidence 4999999999999999999999999999999999998 333222221111111 000000
Q ss_pred cCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCccccCCCcceeeec
Q 001363 251 SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTL 330 (1092)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l 330 (1092)
.+=.-.|+. ....+.+|.++ ...+++
T Consensus 1072 -------------------------------------~~y~gV~g~-------~~dr~~IFSRF----------r~w~~f 1097 (1516)
T KOG1832|consen 1072 -------------------------------------SFYSGVHGN-------RRDRQFIFSRF----------RSWRSF 1097 (1516)
T ss_pred -------------------------------------CcccccccC-------cccchhhHhhc----------ccchhh
Confidence 000000110 00111123222 223677
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
+.|...-+|++||-+.+ .|++|+..|.|+++++.+|..... ...|..+|+.+.=|.||..
T Consensus 1098 rd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred hccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcce
Confidence 88999999999999988 699999999999999999988765 5679999999999999998
Q ss_pred EEEEeCC--CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ec---C
Q 001363 411 LGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG---H 484 (1092)
Q Consensus 411 las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~---~ 484 (1092)
+++.+.- ....+|++.+- ....+++. .-.++.|+..... .++ |..-..+.+||++|+..+.++ .+ .
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RAL-GTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred eeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HHh-cccccceEEEecccCcHHHHhcCcchhh
Confidence 8776443 35789998752 22222332 3457888877553 333 333346899999999887663 22 1
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
...-+...|+|. ..+++ .|| .+||.+..+.+..+.... ....-.|+|.|..++..+ .|||+++
T Consensus 1230 ~y~~n~a~FsP~--D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EIwD~RT 1292 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPC--DTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EIWDMRT 1292 (1516)
T ss_pred hhhccccccCCC--cceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hhhhhHH
Confidence 222245556554 33444 344 469998877666554333 112336999999998864 4799999
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEe--C---------------CCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--D---------------DHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
.+.++...... -..+.|+..|+.++..- . -...|-++..+.+.+.++.... .+..
T Consensus 1293 F~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R---~~~D 1364 (1516)
T KOG1832|consen 1293 FKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR---CLLD 1364 (1516)
T ss_pred HHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc---chhh
Confidence 98887766544 35677888877665432 0 0234556666666777776543 3566
Q ss_pred EEEccCCCEEEEEeC
Q 001363 628 ICFNKNGTLLAVIAN 642 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~ 642 (1092)
+|-+|...++++...
T Consensus 1365 lct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1365 LCTEPTDSFLGVIEM 1379 (1516)
T ss_pred hhcCCccceEEEEec
Confidence 777777777766543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-12 Score=146.55 Aligned_cols=238 Identities=10% Similarity=0.112 Sum_probs=157.5
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe---CCCEEEEEEccCCCcccc
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---SKHIVQLYAYHGGSDARQ 433 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~---~d~~i~iwd~~~~~~~~~ 433 (1092)
..|.+||.+.+.... +..+...+.+.+|||||+.||..+ .+..|.+|++.+|+...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 368888887665432 445677899999999999999764 24579999998875322
Q ss_pred eEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC-Ce
Q 001363 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK 510 (1092)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~ 510 (1092)
+....+.+...+|+|||+. ++++.+.++ .|.+||+++++..+ +..+...+....|+ +||+.|+..+.+ |.
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~ 310 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF--PDSQNLAYTSDQAGR 310 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC--CCCCEEEEEeCCCCC
Confidence 2223334557899999995 233334444 58999998887654 33344556677775 467777766654 55
Q ss_pred EEEE--EcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 511 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 511 i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
..+| |+.++.. ..+...........|+|||++++..+... +...|++||+.+++... +... .......|+|
T Consensus 311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~Sp 383 (429)
T PRK03629 311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAP 383 (429)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECC
Confidence 5555 5554433 33333444556789999999998876432 35679999998887543 3321 1234578999
Q ss_pred CCCEEEEEeCCCc---EEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 589 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
||+.++.++.++. +.++++ +|.....+..+. ..+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 9999999887764 677777 455555555432 3467788876
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-14 Score=147.74 Aligned_cols=272 Identities=16% Similarity=0.174 Sum_probs=213.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
.......+.++.+|++|+.|+..|.|..+|+.++.... ++. -...|.++.|..+.+ +++ ....+.++||| ..
T Consensus 128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~A-VAQK~y~yvYD-~~ 199 (545)
T KOG1272|consen 128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFA-VAQKKYVYVYD-NN 199 (545)
T ss_pred cccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHH-hhhhceEEEec-CC
Confidence 34567789999999999999999999999999986554 332 345688999998887 444 45577899999 88
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
|..++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|.. +
T Consensus 200 GtElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----n 272 (545)
T KOG1272|consen 200 GTELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----N 272 (545)
T ss_pred CcEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----C
Confidence 8889988755 467788886654 57888999999999999999998888888888999999998887777765 7
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
++|.+|.+.+.+.+..+..|. ++|.++++.++|.++++++.|..++|||++....+.+..... ....+++|..|
T Consensus 273 GtVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg 346 (545)
T KOG1272|consen 273 GTVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG 346 (545)
T ss_pred ceEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc
Confidence 789999999999999999988 999999999999999999999999999999888776665432 35778888766
Q ss_pred CEEEEEeCCCeEEEEECCCC-----ceeeecccccCceeeeeecCCCccccccccCCcee
Q 001363 635 TLLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 689 (1092)
. ||.+ ....+.||.-... .....-......|..+.|+|....+++|-..|-..
T Consensus 347 l-LA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 347 L-LALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred c-eeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence 3 3433 3457889953321 11111112234889999999999988877665333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-11 Score=128.70 Aligned_cols=533 Identities=10% Similarity=0.090 Sum_probs=321.8
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
...|++|+.... ++|+|+.||.++|-.+.+...-.... .+...........+.||.+.|.-+.|+.+.+.|-+..
T Consensus 16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 678999999988 69999999999999987654322100 0112222333446899999999999999999999999
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecCCcCeEEEeec
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~i~~~ 494 (1092)
.+|.|.+|-+-.|.-..... -......|.+++|+.||. .++....||.|.|=.++..+.- +.+++. ....+.|
T Consensus 91 t~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w- 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW- 164 (1189)
T ss_pred CCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence 99999999998876544321 123556799999999999 6777788888877665433221 122221 1223455
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCC-------ceE----EecCCCCceEEEEEc--------cCCCEEEEEecCCCCce
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAYS--------ANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~----~~~~~~~~i~~~~~s--------~dg~~l~~~~~~~~~~~ 555 (1092)
++|.+.++.+-.+|.++++|.+..- +.. .+......+..+.|. ||...++.|.. ++
T Consensus 165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG 239 (1189)
T KOG2041|consen 165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG 239 (1189)
T ss_pred -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence 4466677777788999999865321 111 111122234444442 57778888876 44
Q ss_pred eEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceEEEEeCCCCCCCC
Q 001363 556 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 556 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
.+.+..-.+ ..++..-.+ -.+....|+++|..+++++.+ +.|.+|.. -|..+.++..++. .|
T Consensus 240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI 311 (1189)
T ss_pred eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence 455543322 222222222 357788999999999998743 24555543 4677778877654 58
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCcee--------eecccccCceeeeeecCCCccccccccCCceeecCCCCCC
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETPESNSV--------DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 697 (1092)
+.++|-..|-.+|.+- |+.|++=+++..-.. ........+.
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~------------------------------ 360 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQ------------------------------ 360 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcc------------------------------
Confidence 9999988777776654 567777665543111 1111111111
Q ss_pred CccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccc
Q 001363 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777 (1092)
Q Consensus 698 ~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 777 (1092)
-.|.+||..+.+.... ......++++..+.-.|+.-..+|.+.-++.-.+. ...
T Consensus 361 ----------y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~-------~~~ 414 (1189)
T KOG2041|consen 361 ----------YGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR-------SRV 414 (1189)
T ss_pred ----------eEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhcc-------cce
Confidence 2355676543322111 11233455666665555555555554433100000 000
Q ss_pred cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee----------------------
Q 001363 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------------------- 835 (1092)
Q Consensus 778 ~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---------------------- 835 (1092)
..+.+.+.- |. .+. ..-..|.-.-..-++.+++.++...+.+|.....+.
T Consensus 415 ~~l~LCNSI-GT-----~lD--~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ 486 (1189)
T KOG2041|consen 415 YFLQLCNSI-GT-----SLD--YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPE 486 (1189)
T ss_pred EEEeeeccc-CC-----cCC--CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCcc
Confidence 000000000 00 000 011122222333477788888888888887432110
Q ss_pred ----------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001363 836 ----------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 836 ----------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 905 (1092)
..++.+..++|.+++.+ .++|.++-..|.|.-|.+.+........ -+..|.++++.-+...+|...
T Consensus 487 ga~d~~l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId 562 (1189)
T KOG2041|consen 487 GAQDRTLEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIID 562 (1189)
T ss_pred chhhceeeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhh
Confidence 12345566788888886 4699999999999999999877666654 456688999988888999988
Q ss_pred CCCcEEEEEcCC-CceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCC
Q 001363 906 GDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 966 (1092)
Q Consensus 906 ~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~ 966 (1092)
.-|.+.+.|+.- ........+...+. ..|..+.|..|+..+++- ....++|++-.+
T Consensus 563 ~~gv~tf~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 563 LVGVVTFQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred hhceeeeeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcC
Confidence 889999988872 22222222222222 258899999998877764 444577777543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-12 Score=146.17 Aligned_cols=237 Identities=13% Similarity=0.071 Sum_probs=161.0
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC---CCEEEEEEccCCCcccc
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 433 (1092)
..|.+||...+.... +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 478888886554332 5568889999999999999998763 468999999987532
Q ss_pred eEEEcccccceeEEEEecCCCcEEEEEEeCCCc--EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-CC-
Q 001363 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG- 509 (1092)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg- 509 (1092)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.+++. ..+..+........|+ +||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence 34456677889999999995 3445665655 77789888765 4455566556667775 46777776653 34
Q ss_pred -eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 510 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 510 -~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
.|.++|+....... +......+....|+|||+.|+...... +...|.+||..++.. +.+.. . ..+....|+|
T Consensus 314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp 386 (435)
T PRK05137 314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP 386 (435)
T ss_pred CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence 57777876554433 333344566788999999998876432 346799999866543 33322 1 2456788999
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 589 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 589 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
||+.++..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 99998775532 3578888876554 3443221 255667766
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-12 Score=136.87 Aligned_cols=283 Identities=13% Similarity=0.187 Sum_probs=204.8
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
+|...-+.+..||||+|++|+|..--.|++||+..-.....+.+ ....|.-.-+|-|-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence 46668889999999999999999999999999987654432111 23456666667676677
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
+.-..|.+|.+-.-.. ... .++ -...-..++++.-... |+.++....|+-.+++.|+.+..+....+.++++
T Consensus 110 v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence 7777787776644322 100 111 1112234555544443 4444445578999999999999998888999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------C-----CceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------G-----LGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~-----~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
.+++.. .+|++|+.+|.|.+||.+.......+... . ..|+++.|+.+|-.+++|.. .|.+++|
T Consensus 182 ~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy 255 (703)
T KOG2321|consen 182 SINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY 255 (703)
T ss_pred eecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence 886543 68999999999999999887665543322 1 24899999999999999976 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
|+++.+.+..-.... .-+|..+.|.+.+ +.+++. ....++|||-.+|+....+... ..++.+|+-|++.+++
T Consensus 256 DLRa~~pl~~kdh~~--e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGY--ELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFF 329 (703)
T ss_pred EcccCCceeecccCC--ccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc---CCcCceeeecCCceEE
Confidence 999888765433222 3678889997763 344443 4578999999999999888654 4589999999999999
Q ss_pred EEeCCCeEEEEECCC
Q 001363 639 VIANENRIKILETPE 653 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~ 653 (1092)
++-.++.+..|-++.
T Consensus 330 ~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 330 TANESSKMHTYYIPS 344 (703)
T ss_pred EecCCCcceeEEccc
Confidence 999988887776654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=128.26 Aligned_cols=206 Identities=14% Similarity=0.133 Sum_probs=163.6
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCC---ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcC-C
Q 001363 801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMT---FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-S 875 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~ 875 (1092)
...+|+|.+|++|+..+|++.. ..+.||.... .+..+++..|...|+.+.|+| ..+.|++++.|..-++|... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 3568999999999999999975 6899998764 457889999999999999999 88899999999999999994 3
Q ss_pred c--eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 876 S--EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 876 ~--~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
+ ++.-.+..|...++++.|+|.++.+|+||..+.|.||=++... ...+-+...... ...|.+++|.|++-+|++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN--dWWVsKhikkPi--rStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN--DWWVSKHIKKPI--RSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc--ceehhhhhCCcc--ccceeeeeccCCcceecc
Confidence 3 3455566699999999999999999999999999999887632 111111111111 136999999999999999
Q ss_pred -EeCCcEEEEEcC-----C-------------ceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce
Q 001363 954 -VHETHLAIYEAE-----E-------------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 954 -~~d~~i~lwd~~-----~-------------~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
+.|+..+|+..- . |+.+.++ ....+.|..+.|||+|..|+-.+.|+++.+=|......
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence 589998888641 1 1222221 13478899999999999999999999999999887753
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=148.22 Aligned_cols=234 Identities=14% Similarity=0.105 Sum_probs=153.2
Q ss_pred ccCCCcceeeecccCCCCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC
Q 001363 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~ 396 (1092)
+.+......+.+..+.+.+...+|||||++++.+.. .+..|.+||+.+|+.... ....
T Consensus 183 ~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l--------------------~~~~ 242 (429)
T PRK03629 183 VSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--------------------ASFP 242 (429)
T ss_pred EEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------------------cCCC
Confidence 344444444556667778999999999996544432 235799999998865432 2223
Q ss_pred CcEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-CCc--EEEE
Q 001363 397 VSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVW 470 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~--i~vw 470 (1092)
+.+..++|||||+.|+.. +.++ .|.+||+.+++.. .+..+...+....|+|||+ .|+..+. ++. |.++
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEE
Confidence 345568999999999876 3344 5899999887533 2444555678899999999 4544443 344 5555
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
|+.+++. ..+..+........|+ +||++|+..+.+ ..|.+||+.++.... +.. ........|+|||+.++..
T Consensus 317 d~~~g~~-~~lt~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 317 NINGGAP-QRITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYS 391 (429)
T ss_pred ECCCCCe-EEeecCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEE
Confidence 7776654 3443344445556664 577787776543 358888988765443 222 1233467899999999998
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
+.++. ...+++++. +|.....+.++. +.+...+|+|
T Consensus 392 s~~~~-~~~l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 392 SSQGM-GSVLNLVST-DGRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred EcCCC-ceEEEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence 86543 556888887 455556666655 6677778876
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-14 Score=145.22 Aligned_cols=273 Identities=18% Similarity=0.189 Sum_probs=211.7
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.-..+.|+.+|++ ++.|+..|.|..+|+.++....... -...|..+.|-.+.+++|++
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA- 188 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh-
Confidence 6678999999995 5667777999999999998876433 23578899999999999998
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
....++|||-.. ..+. .++.| ..|..+.|.|--- +|++++..|.++--|+.+|+.+..+....+.+..++-+|
T Consensus 189 QK~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 189 QKKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred hhceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 455699999765 3333 34444 3589999999765 899999999999999999999999988888888888765
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
.+ ..+-+|...|+|.+|.....++...+..|.++|.++++.++|+++++.+. +..+.|||+++-..+.++.. .
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p 334 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P 334 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence 43 57889999999999999999999999999999999999999999999987 66699999998877666655 2
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCc--eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1092)
.+...+++|..| +++.+....|.||. .-.+. .-...-.|.-...|..+.|.|-...|-+|...|.-.|.
T Consensus 335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 467778888765 55666667899994 33322 11111112222368899999988888887766544443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-09 Score=126.87 Aligned_cols=569 Identities=11% Similarity=0.127 Sum_probs=308.0
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCcEEEE----ecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLW----DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~i~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
..+.|.++.|-++.. -+..+..+|.|.+. +..+...... ..-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~V--------------------G~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEIV--------------------GSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEEE--------------------EEEcCcEEEEEECCCc
Confidence 346899999999997 46777788999999 5555443332 2245789999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-----------
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR----------- 477 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~----------- 477 (1092)
..||..+.++++.+-+-.- +.+. +..-+.. .|-. + ..++.|.-+.=.-+.-..|+.
T Consensus 133 Ella~vT~~~~l~~mt~~f-d~i~---E~~l~~~-----~~~~-~---~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDF-DPIS---EVPLDSD-----DFGE-S---KHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred CEEEEEeCCCEEEEEeccc-eEEE---EeecCcc-----ccCC-C---ceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 9999999999887765321 1111 1111110 1100 1 123322211111111011111
Q ss_pred ---eEEEecCCcCeEEEeecccCCccEEEEEec---C---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 478 ---TYSFEGHGAPVYSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 478 ---~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
...+. +...-..++| .+||.++++.+. . ..+|||+-+ +..........+--.+++|.|.|+++++..
T Consensus 200 ~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 200 KVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred ccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence 01122 3333445555 779999998875 3 469999754 332223333333345789999999999887
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeecc-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE--EEEeCCCCCCCC
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPEN 625 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v 625 (1092)
. ......|..|. ++|-.-..|.-.. .....|..+.|++++..|+..-.|. |.+|...+.... +.+..... ..+
T Consensus 276 ~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~ 351 (928)
T PF04762_consen 276 R-LPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESV 351 (928)
T ss_pred E-cCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCC
Confidence 5 23345666776 4555544444331 1236799999999999999877655 999998887643 33333322 234
Q ss_pred ceEEEcc-CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceee
Q 001363 626 PRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 704 (1092)
Q Consensus 626 ~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 704 (1092)
..+.|+| +...|.+.+.+|.+..++..-. +..++.. +|+..-.+..
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~---------------v~~s~~~------------------~~~D~g~vaV 398 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDFAWD---------------VSRSPGS------------------SPNDNGTVAV 398 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEEEEE---------------EEecCCC------------------CccCceEEEE
Confidence 5699999 4556788887788776654311 0000000 0111111111
Q ss_pred ccccccceeccc---cccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001363 705 EAENKSEVEKPL---FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 705 ~~d~~i~lw~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 781 (1092)
-...++++-.+. .+.|.....+. -...|..++|++++..+++...||.+.+|.++...............+
T Consensus 399 IDG~~lllTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~- 472 (928)
T PF04762_consen 399 IDGNKLLLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI- 472 (928)
T ss_pred EeCCeEEEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhc-
Confidence 111123332221 11222222332 346799999999999899999999999999766432210000000000
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC----CeEEEEEcCCce---eeEEecCCCCCeEEEEEcCC
Q 001363 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPH 854 (1092)
Q Consensus 782 ~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~ 854 (1092)
.. .. ...... ......+..++|..+..+++.... ..+.++++...+ .........+.+..+...+
T Consensus 473 --~~--~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 544 (928)
T PF04762_consen 473 --SL--DS-MDISDS--ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP- 544 (928)
T ss_pred --cc--cc-cccccc--ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-
Confidence 00 00 000000 013456778888888877776653 458888874332 2333333445555566665
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcee-eEeeccccCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC
Q 001363 855 DNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG 931 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg--~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 931 (1092)
+...++.-..+|.+...+...... +..|..-...+..+.+.... ..++.-+..|.+++ .+ . .+.
T Consensus 545 ~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la---- 611 (928)
T PF04762_consen 545 DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA---- 611 (928)
T ss_pred CCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe----
Confidence 444466677899988776654322 22333222222222332222 14444455554443 11 1 111
Q ss_pred CcCCCCCceEEEEccCCCEEE-EEeCCcEEEEEcC-CceeeeeeccCC----CCCEEEEEEecCCCEEEEEECCCcEEEE
Q 001363 932 VMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAE-ELTCLKQWFPIS----SVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 932 ~~~~~~~v~~l~~s~dg~~la-~~~d~~i~lwd~~-~~~~~~~~~~~h----~~~v~~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
..++++++ .+.+|+ +.....+++.++. ....+......+ ...+.. -..|..|+++-....=.|-
T Consensus 612 -----~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~---VERGsriVt~vp~~~~vVL 681 (928)
T PF04762_consen 612 -----SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRR---VERGSRIVTAVPSDTSVVL 681 (928)
T ss_pred -----cCCceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCcccccccccccc---CccCCEEEEEeCCCceEEE
Confidence 13666666 344444 4666778888887 111111111111 112222 2368888887765566677
Q ss_pred EcCCCceE
Q 001363 1006 EASNLEVQ 1013 (1092)
Q Consensus 1006 d~~~~~~~ 1013 (1092)
.++.|.+.
T Consensus 682 QmPRGNLE 689 (928)
T PF04762_consen 682 QMPRGNLE 689 (928)
T ss_pred EcCCCchh
Confidence 88888775
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-11 Score=129.54 Aligned_cols=287 Identities=11% Similarity=0.115 Sum_probs=188.3
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
......++|++|+ ++|.+ .+..++|++..++..+.+ -....+.++.|||-|.+|.+-
T Consensus 35 ~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T~ 91 (566)
T KOG2315|consen 35 RPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLTW 91 (566)
T ss_pred CcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeecccccccccc
Confidence 3477889999998 67765 457899999998864432 122378899999999999873
Q ss_pred -----eCC-----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 415 -----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 415 -----~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
..+ ..+.+|+++++.... .+......-++..|+.|.. ++.=-..+.+.+|+...-+.+. -.-|
T Consensus 92 e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~ 164 (566)
T KOG2315|consen 92 EPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLS 164 (566)
T ss_pred cccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeee
Confidence 122 347899999953322 1222222226899999987 4433345679999987743332 2236
Q ss_pred CcCeEEEeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEec---CCCCceEEEEEccCCCEEEEE-ecCC----
Q 001363 485 GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSC-GTSK---- 551 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~~l~~~-~~~~---- 551 (1092)
...|+.+.+++.+.-..+++ .+.-+.+++|.+.......... .....-..+.|++-|.-|++. +.+-
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 77888888888765556654 3556679999876222211111 111122356788877654432 2211
Q ss_pred ---CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 552 ---EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 552 ---~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
-|+..+++.+.........+.. .++|.++.|+|+++.+++ |-.-..+.|||++ +..+..+.. ..-+
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN 315 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRN 315 (566)
T ss_pred ccccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCcc
Confidence 2456788888874444333332 489999999999987766 5577889999985 455555532 2347
Q ss_pred eEEEccCCCEEEEEeCC---CeEEEEECCCCceeeec
Q 001363 627 RICFNKNGTLLAVIANE---NRIKILETPESNSVDAA 660 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~ 660 (1092)
++-|+|.|++++.++.+ |.|.|||+.+.+.+..+
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 89999999999988874 88999999886655444
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9e-12 Score=130.09 Aligned_cols=282 Identities=13% Similarity=0.102 Sum_probs=190.4
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
.-++..+.|||.|+ +|++... ..|.+|.-..+..+..+ ....|..+.|||.++||.+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcch-heehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceeee
Confidence 44788999999998 5666544 56999998877654321 2357999999999999999
Q ss_pred EeCCC---------------EEEEEEccCCCcccceEEEcccccc--ee-EEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 414 AYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 414 ~~~d~---------------~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
-+..+ .+.+||..+|..+. .+.+...+ .+ -+.|+-|.+ +++-- ....+.|+++ ++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~ 161 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TD 161 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CC
Confidence 75443 38999999987655 44444444 44 678999988 33332 2346999997 44
Q ss_pred cee-EEEecC-CcCeEEEeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 476 SRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 476 ~~~-~~~~~~-~~~v~~i~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
... ..+..- ...|....++|..++..|+. ...++++++|.+.....+.........-..+.|.+.|++|++-.
T Consensus 162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence 322 122111 24567777877766666554 45678899999886665554443333344678889998876433
Q ss_pred c-------CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceEEEEeCC
Q 001363 549 T-------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 549 ~-------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
. +.-++..++++++....+.... ... ++|...+|.|.++.+++. -.+..+.++|++.. ....+...
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~ 316 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSIPVEK-DLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ 316 (561)
T ss_pred EEeeecccceeccceEEEEeecccccceec-ccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc
Confidence 2 1123466888888744332222 333 899999999999887664 47888999998765 44443322
Q ss_pred CCCCCCceEEEccCCCEEEEEeCC---CeEEEEECCCC
Q 001363 620 GGLPENPRICFNKNGTLLAVIANE---NRIKILETPES 654 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~ 654 (1092)
. -+.+.|+|.++++++++-| |.+.+|+....
T Consensus 317 ~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 317 K----RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred c----cccccccCcccEEEEecCCccccceEEeccCCc
Confidence 2 3678999999999998765 67888876643
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-12 Score=147.67 Aligned_cols=233 Identities=15% Similarity=0.131 Sum_probs=152.8
Q ss_pred ccCCCcceeeecccCCCCceEEeecCCCceEEEEEcC---CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC
Q 001363 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h 395 (1092)
+.+......+.+..|...+.+.+|||||++ |+..+. +..|.+||+.+++... +..+
T Consensus 188 i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~ 246 (433)
T PRK04922 188 VADSDGYNPQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASF 246 (433)
T ss_pred EECCCCCCceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccC
Confidence 344444555667777778999999999996 454442 3469999998887543 2233
Q ss_pred CCcEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-CCCc--EEE
Q 001363 396 GVSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKV 469 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~--i~v 469 (1092)
.+...+++|||||+.|+.. +.++ .|++||+.+++.. .+..+.......+|+|||++ ++..+ .++. |.+
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYR 320 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEE
Confidence 4455678999999988754 4444 6999999987632 34456555678899999994 54444 4444 677
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
+|+.+++... +..+.......+|+ +||+.|+..+.++ .|.+||+.++... .+. +........|+|||++++.
T Consensus 321 ~dl~~g~~~~-lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~ 395 (433)
T PRK04922 321 VAASGGSAER-LTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLY 395 (433)
T ss_pred EECCCCCeEE-eecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEE
Confidence 7877776433 32233334456674 4677877665443 5899998776654 332 2223456799999999888
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
.+.. .+...|++++...+ ....+..+. +.+...+|+|
T Consensus 396 ~s~~-~g~~~L~~~~~~g~-~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 396 ATRE-GGRGVLAAVSTDGR-VRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred EEec-CCceEEEEEECCCC-ceEEcccCC---CCCCCCccCC
Confidence 7754 34667999998544 444444333 4556666765
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-12 Score=145.62 Aligned_cols=238 Identities=15% Similarity=0.120 Sum_probs=157.4
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC---CCEEEEEEccCCCcccc
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 433 (1092)
..|.+||...+.... +..|...+.+.+|+|||+.|+..+. +..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468899986554332 4557788999999999999998864 347999999887532
Q ss_pred eEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe-cCCe
Q 001363 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGK 510 (1092)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~ 510 (1092)
.+..+.+...+.+|+|||+. ++++.+.++ .|++||+.+++.. .+..+.......+|+ +||+.|+..+ .+|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence 23344455668899999995 334555555 5999999888753 455555555667774 4677777665 4455
Q ss_pred --EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 511 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 511 --i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
|.++++.+++.. .+..........+|+|||++++....+ .+...|++||+.+++... +.. . .......|+|
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~-Lt~-~---~~~~~p~~sp 388 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRT-LTP-G---SLDESPSFAP 388 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEE-CCC-C---CCCCCceECC
Confidence 555566554432 222333344568999999999887642 234579999998887653 321 1 2334568999
Q ss_pred CCCEEEEEeCC---CcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 589 AKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 589 ~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
||++++..+.+ +.+.+++... .....+..+. ..+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 99998876643 4578888854 4444444322 2356667765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-10 Score=124.94 Aligned_cols=210 Identities=14% Similarity=0.202 Sum_probs=137.3
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceeeEE---e----------cCCCCCeEEEEEcCCCCCEEEEEeC-CC
Q 001363 804 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGMD-DS 866 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~lasg~~-dg 866 (1092)
....++++|++++|+++. +|.+.++++.. +..... + +.......++.|+| +++++++... ..
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345678888888888886 58888888875 333222 1 11234678999999 8887777543 34
Q ss_pred cEEEEEcCCce--ee--Eeec-cccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC--CCceeeeeeeecCCCCcCCCCC
Q 001363 867 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS 938 (1092)
Q Consensus 867 ~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 938 (1092)
.|.+|++.... .. ..+. ........++|+||++++.... .+++|.++++. .+.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 21 2222 2445678999999999886654 57889999998 5544444444443222211125
Q ss_pred ceEEEEccCCCEEEEE--eCCcEEEEEcC--Ccee--eeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEc--CC
Q 001363 939 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SN 1009 (1092)
Q Consensus 939 v~~l~~s~dg~~la~~--~d~~i~lwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~--~~ 1009 (1092)
...++++|||++|.++ ..+.|.+|++. +++. +.. ..........++|+|||++|+++. .++.|.+|++ .+
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 7899999999999986 45689999993 3332 222 222244588999999999999887 5578999976 46
Q ss_pred CceEEe
Q 001363 1010 LEVQCR 1015 (1092)
Q Consensus 1010 ~~~~~~ 1015 (1092)
|.+...
T Consensus 326 G~l~~~ 331 (345)
T PF10282_consen 326 GKLTPV 331 (345)
T ss_dssp TEEEEE
T ss_pred CcEEEe
Confidence 665533
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-12 Score=144.73 Aligned_cols=223 Identities=14% Similarity=0.100 Sum_probs=145.8
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577889999999999999987643 469999999886432 3334455678999999995 334667787766
Q ss_pred EEE--CCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-CCeEEEEEcC--CCCceEEecCCCCceEEEEEccCCCE
Q 001363 469 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 469 vwd--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
||. +.++. ...+..+........|+ +||+.|+..+. +|...+|.++ .+.. ..+...........|+|||++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCE
Confidence 665 44444 45555555555666774 46777765554 5677777654 3322 222222333446789999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEeCCC
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~ 620 (1092)
++..+..+ +...|++||..+++......+ .......|+||++.|+.++.++ .+.+.+. ++.....+..+.
T Consensus 342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 98776432 245799999988876543322 2235678999999998876444 3555566 455555554332
Q ss_pred CCCCCceEEEcc
Q 001363 621 GLPENPRICFNK 632 (1092)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1092)
..+...+|+|
T Consensus 415 --g~~~~p~wsp 424 (427)
T PRK02889 415 --GDVREPSWGP 424 (427)
T ss_pred --CCCCCCccCC
Confidence 2356677776
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-12 Score=145.33 Aligned_cols=235 Identities=20% Similarity=0.197 Sum_probs=150.1
Q ss_pred cCCCcceeeecccCCCCceEEeecCCCceEEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001363 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
.+......+.+..+.+.+.+.+|||||++++.+...+ ..|.+||+.+|+... +....+
T Consensus 181 ~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g 240 (427)
T PRK02889 181 SDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKG 240 (427)
T ss_pred ECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCC
Confidence 3334444556667778999999999998644443222 459999999887543 222345
Q ss_pred cEEEEEECCCCCEEEE-EeCCCEEEEEEc--cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE--C
Q 001363 398 SVNRVVWSPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--A 472 (1092)
Q Consensus 398 ~V~~l~~spdg~~las-~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd--~ 472 (1092)
.+.+.+|||||+.|+. .+.++...||.+ .++. .+ .+..+.+.+....|+|||+.+ ++++..++...||. +
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~l-~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRSI-YFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCEE-EEEecCCCCcEEEEEEC
Confidence 5678999999999875 566776666654 4443 22 345566666788999999952 23333456666665 4
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
.+++. ..+..+........| ++||++|+..+.++ .|.+||+.+++...... ........|+|||+.|+..+.
T Consensus 316 ~~g~~-~~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 316 SGGAA-QRVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CCCce-EEEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEe
Confidence 45543 222222223334556 45778888776654 59999998776543322 223467899999999998876
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
.+ +...+++.+. +|.....+..+. +.+...+|+|-
T Consensus 391 ~~-g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~ 425 (427)
T PRK02889 391 QG-GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGPF 425 (427)
T ss_pred cC-CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence 43 3566777777 455555555443 55666677763
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-12 Score=128.72 Aligned_cols=272 Identities=13% Similarity=0.125 Sum_probs=194.6
Q ss_pred CCCceEEeecCCCceEEEEE-cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVG-TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg-~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
.+.|+.++|.-|++.=+..+ +.|-.+............. .||+.. ......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence 45788888887765433333 3566677776666554432 233221 23345666666665 33667
Q ss_pred EEeCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCC--CcEEEEECCCCceeEEEecC-----
Q 001363 413 VAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH----- 484 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~~~~~~~~~~----- 484 (1092)
+|-.+|.+.+|..+.+..- .....+..+ ..+..+.-++...+ ++++||.. ..+.|||+++.+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 7788999999999854311 111123333 34667777777665 67779988 88999999988665543321
Q ss_pred ----CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 485 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 485 ----~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.-+++++.|.+..+...|++++.-+.+++||.+.++. ...+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1245566776654578999999999999999997664 4577888889999999999999999865 556999
Q ss_pred EeCCCCeEEEE-EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 560 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 560 wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
+|.+++..... +.+.. +.+.++..+|..+++++++-|..+||+|+.+.+++...-... ..+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 77777 899999999999999999999999999999977765554332 245555544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-10 Score=121.73 Aligned_cols=358 Identities=12% Similarity=0.152 Sum_probs=227.2
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001363 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
.+|...+......+....-++..+++||.|.+|++.... .|.+|+...+..+..+.. ..|..+.|+|.++
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~k 84 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEK 84 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccc
Confidence 345444444444444456688899999999999987642 399999887776555554 4699999999999
Q ss_pred EEEEEeCCC---------------cEEEEECCCCceEEEEeCCCCCCCCc-eEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 592 QILAAGDDH---------------VIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 592 ~l~~~s~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
+|.+-+..+ .+.+||..+|..+..+.......... -+.|+.+.+++|-. ....+.|+++ ++.
T Consensus 85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n 162 (561)
T COG5354 85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN 162 (561)
T ss_pred eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCc
Confidence 999865333 49999999999999887664432233 68899888877655 3357889886 221
Q ss_pred eee-eccc-ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccc
Q 001363 656 SVD-AAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 733 (1092)
Q Consensus 656 ~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~ 733 (1092)
... .+.. ....
T Consensus 163 ~~~~p~~~lr~~g------------------------------------------------------------------- 175 (561)
T COG5354 163 IEEHPFKNLRPVG------------------------------------------------------------------- 175 (561)
T ss_pred cccCchhhccccc-------------------------------------------------------------------
Confidence 110 0000 0122
Q ss_pred cccEEEEEEecCCc--EEEE-----eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001363 734 ANKISRLTYNNGGQ--AIFA-----LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~--~l~~-----~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~ 806 (1092)
|....++|.|. .|+. .+..+++++|.++.++. +.+..+ ....-.
T Consensus 176 ---i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~ 226 (561)
T COG5354 176 ---ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGV 226 (561)
T ss_pred ---eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe----------------------eeeeee----Eeeccc
Confidence 22333333211 1111 12345666666553321 111111 011112
Q ss_pred EEEEecCCCEEEEEe------------CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE--EeCCCcEEEEE
Q 001363 807 CFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYN 872 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~v~iwd 872 (1092)
.+.|.+.|+++++-- ...+.|+++..... .....-.++|...+|.| .++.+++ |..+-.+-++|
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecc-cCCceeEEecccccceeecc
Confidence 345556666554321 24588888874333 33335678999999999 5555444 35778999999
Q ss_pred cCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 873 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 873 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
++.. ++..+. ..+=..+.|||.+++++.++-| |.|-+||..+.- .++....+. ..+.+.|||||.
T Consensus 305 lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~q 372 (561)
T COG5354 305 LRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQ 372 (561)
T ss_pred cccc-eEEecC--CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCce
Confidence 9864 443333 3444568999999999998876 569999998743 233233332 356788999999
Q ss_pred EEEEE-------eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCC
Q 001363 950 RFLLV-------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 950 ~la~~-------~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
++.+. .|..+.|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 373 F~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 373 FYDTDTTSEKLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred EEEecCCCcccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 99873 3678999998644332 356678889899888877765
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.3e-13 Score=139.62 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=115.3
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeE-----------EeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-----------IRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..|+|+.|-|.++.++.++-.+|.+.++|.+--.... .+.+..|--....++... +.--++.|...+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~--w~~~~g~in~f~ 297 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR--WHIGEGSINEFA 297 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce--eEecccccccee
Confidence 5999999999887777777888999999763211000 011111110111011111 111345899999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
|||||++||+.+.||.++|+|..+.+.+. .++.--+...|++|||||+ ++++|+.|--|.||.+..++.+..-++
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEeccc
Confidence 99999999999999999999999876555 3344556899999999999 899999999999999999999999999
Q ss_pred CCcCeEEEeec
Q 001363 484 HGAPVYSLCPH 494 (1092)
Q Consensus 484 ~~~~v~~i~~~ 494 (1092)
|..+|..++|.
T Consensus 373 HkSWVs~VaFD 383 (636)
T KOG2394|consen 373 HKSWVSVVAFD 383 (636)
T ss_pred cccceeeEeec
Confidence 99999999997
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-10 Score=123.65 Aligned_cols=336 Identities=14% Similarity=0.155 Sum_probs=209.8
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-----eC-----
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD----- 598 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----s~----- 598 (1092)
..++...+++++|++++.+. +..+.|++..++..+.+... ..+..+.|+|.++++.+- ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence 34567889999999999886 44588999888864333332 358899999999988762 12
Q ss_pred CCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcc
Q 001363 599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
.-.+.+|+++++.....+...... -.+..|++|..+.+-. ..+.+.+|+..+-+.. ...-+...+..+.++|.+..
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAARL-VSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhhh-hcceEEEEecCCccce-eeeeeccceeeEEecCCCCC
Confidence 234779999996655555443222 2578888877654332 3478999998873222 23345667777777765322
Q ss_pred ccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCee
Q 001363 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 758 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 758 (1092)
. .+++ ...-..+.-..+|+|........... ....- -...=..+.|++-|.-|+.....
T Consensus 180 ~-------~vAv--------yvPe~kGaPa~vri~~~~~~~~~~~~--a~ksF-Fkadkvqm~WN~~gt~LLvLast--- 238 (566)
T KOG2315|consen 180 P-------FVAV--------YVPEKKGAPASVRIYKYPEEGQHQPV--ANKSF-FKADKVQMKWNKLGTALLVLAST--- 238 (566)
T ss_pred c-------eEEE--------EccCCCCCCcEEEEeccccccccchh--hhccc-cccceeEEEeccCCceEEEEEEE---
Confidence 1 1111 00112344467888886522211110 00000 11122345677766655433221
Q ss_pred EEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCCcee
Q 001363 759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKT 835 (1092)
Q Consensus 759 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd---g~i~iwd~~~~~~ 835 (1092)
+++....+.- ...++.+.+.. |. -....+. ..++|.++.|+|+|+-++++.+ .++.|||+. +..
T Consensus 239 ---dVDktn~SYY----GEq~Lyll~t~-g~-s~~V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~ 305 (566)
T KOG2315|consen 239 ---DVDKTNASYY----GEQTLYLLATQ-GE-SVSVPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKP 305 (566)
T ss_pred ---eecCCCcccc----ccceEEEEEec-Cc-eEEEecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCE
Confidence 0111100111 11223333334 22 1222232 5789999999999998888763 779999986 555
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEeCC---CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeC------
Q 001363 836 ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG------ 906 (1092)
Q Consensus 836 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------ 906 (1092)
+..+ ..++=.++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-.. +-..|+|||.+++|++.
T Consensus 306 v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 306 VFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred eEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence 5544 456678899999 78888887765 7999999999999988885443 45899999999999875
Q ss_pred CCcEEEEEcCC
Q 001363 907 DAQIFVWDVDG 917 (1092)
Q Consensus 907 Dg~I~iwd~~~ 917 (1092)
|+.++||+..+
T Consensus 381 dNg~KiwhytG 391 (566)
T KOG2315|consen 381 DNGIKIWHYTG 391 (566)
T ss_pred cCCeEEEEecC
Confidence 67799999987
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.7e-12 Score=142.17 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=153.7
Q ss_pred cCCCcceeeecccCCCCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001363 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
.+......+.+..|...+.+.+|||||++++.+.. .+..|.+||+.+|+... +..+.+
T Consensus 187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g 246 (435)
T PRK05137 187 MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPG 246 (435)
T ss_pred ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCC
Confidence 34445555677788889999999999996444432 24689999999887543 344566
Q ss_pred cEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-CC--CcEEEEE
Q 001363 398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD--KTIKVWD 471 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d--~~i~vwd 471 (1092)
.+.+.+|||||+.|+.. +.++ .|.+||+.+++.. .+..+.+......|+|||++ ++..+ .+ ..|.+||
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMN 320 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEE
Confidence 77889999999988754 4444 4778898887532 35556666778999999995 44443 33 3688889
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
+.+++. +.+..+...+....|+ +||+.|+..+.+ ..|.+||+...... .+.. ...+..+.|+|||+.|+..+
T Consensus 321 ~~g~~~-~~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 321 ADGSNP-RRISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred CCCCCe-EEeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEE
Confidence 776654 3444344555566674 467788776543 35778887554432 2222 23467789999999998776
Q ss_pred cCCCCc--eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 549 TSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 549 ~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
...... ..++++|+..+.. ..+.. . +.+...+|+|
T Consensus 396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 396 QTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred ccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 533221 4688889876654 33332 2 3355556665
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-09 Score=112.91 Aligned_cols=172 Identities=15% Similarity=0.172 Sum_probs=133.1
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCceeeEeeccccCCeEE
Q 001363 813 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 813 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
+|.+++..+.|...|.+...+-.++. ++.+.|.-..+.. +++-++.|..|| .+-|||..+++ +.++...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence 78999999999988888766554433 4667788888888 777889999999 99999999876 4556667788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eC----CcEEEEEcCC
Q 001363 892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE----THLAIYEAEE 966 (1092)
Q Consensus 892 l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d----~~i~lwd~~~ 966 (1092)
+..+|||+.++.+-....|.+.|++++..+. +...+ . +-|+.++|+|+++++|-+ -+ ..|++||+.+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~---idkS~--~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKSE--Y---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeE---ecccc--c---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 9999999999999888899999999976322 22111 1 368999999999999986 23 4699999998
Q ss_pred ceeeeeeccCCCCCEEEEEEecCCCEEEEEEC
Q 001363 967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
++...... ..+.-.+-+|.|||++|..-+.
T Consensus 479 ~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 479 GKIYDVTT--PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CeEEEecC--CcccccCcccCCCCcEEEEEec
Confidence 88766432 2333455689999998876553
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-09 Score=111.10 Aligned_cols=281 Identities=11% Similarity=0.098 Sum_probs=185.5
Q ss_pred ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC---CeeEEEeecCCCcCcCcccccccCCccc
Q 001363 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1092)
Q Consensus 707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~ 783 (1092)
+..|.+|+++......... .........+-++++|+++.|.++..+ |.+.-|.++.
T Consensus 15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------ 73 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------ 73 (346)
T ss_pred CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence 4668888887433221111 112356677889999999999888665 6666666543
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceeeEE--ecCCCCC----------eEE
Q 001363 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS 848 (1092)
Q Consensus 784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 848 (1092)
.+|.-........ ...+...++++++|++|+++. .|.|.++-+.. |..... ...|.+. +..
T Consensus 74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 3333222221111 233347899999999999997 58999999965 433221 1223333 788
Q ss_pred EEEcCCCCCEEEEEeCC-CcEEEEEcCCceeeEeec---cccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC--Ccee
Q 001363 849 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ 921 (1092)
Q Consensus 849 l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iwd~~~--~~~~ 921 (1092)
..+.| ++++|++.+-. -.|.+|++..|+....-. .-...-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 89999 89888876532 279999999876432211 23445688999999999876665 89999999987 4544
Q ss_pred eeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeC--CcEEEEEcCC--ceee-eeeccCCCCCEEEEEEecCCCEEEEE
Q 001363 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTCL-KQWFPISSVPISQATFSCDCRMVFTS 996 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d--~~i~lwd~~~--~~~~-~~~~~~h~~~v~~l~fs~dg~~l~t~ 996 (1092)
..+.+.++.....-..+...+.+++||++|.++.. +.|.+|.+.. ++.. ......+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 44455444443333346788999999999999744 4688887753 3321 12233345557889999999999998
Q ss_pred ECC-CcEEEEEcC--CCceE
Q 001363 997 FVD-GTLSIHEAS--NLEVQ 1013 (1092)
Q Consensus 997 ~~D-g~i~vwd~~--~~~~~ 1013 (1092)
..+ ..|.+|..+ +|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 865 458888665 45544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-11 Score=127.81 Aligned_cols=284 Identities=16% Similarity=0.185 Sum_probs=191.2
Q ss_pred ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC-cCeEEEeecccCCccEEEEEecCCeEEEEEcC
Q 001363 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517 (1092)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~ 517 (1092)
+|...-+.|..+|||++ ++++|...-.|++||+..-... |..|. ..+..+.+. +.|-..++.-..|.+|.+..-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak- 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAK- 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhh-
Confidence 46677889999999997 7889999999999998765543 33332 223222221 122233444455555554311
Q ss_pred CCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe
Q 001363 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1092)
Q Consensus 518 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 597 (1092)
......... ......++++.-..-|++++.. ..|+-+++..|..+..+.... +.++++..++....|++|+
T Consensus 124 -~G~hy~~RI-P~~GRDm~y~~~scDly~~gsg----~evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 124 -YGRHYRTRI-PKFGRDMKYHKPSCDLYLVGSG----SEVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGT 194 (703)
T ss_pred -cCeeeeeec-CcCCccccccCCCccEEEeecC----cceEEEEcccccccccccccc---ccceeeeecCccceEEecc
Confidence 111111111 1122345555444444444432 239999999999999988876 8999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEeCCCC---------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc-cccCce
Q 001363 598 DDHVIKIWDMNKVQLLTTIDAGGG---------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNL 667 (1092)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v 667 (1092)
.+|.|..||.++...+.++..... .+.|+++.|+.+|-.+++|+.+|.+.|||+...+++.... +..-+|
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 999999999999887777654322 3458999999999999999999999999999887665433 344556
Q ss_pred eeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCc
Q 001363 668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ 747 (1092)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 747 (1092)
..+.|.+. -+++.+++ .....++|||-..+.+..... ....++.+++-|++-
T Consensus 275 ~~l~~~~~--------------------~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE-------pt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 275 KKLDWQDT--------------------DQQNKVVS-MDKRILKIWDECTGKPMASIE-------PTSDLNDFCFVPGSG 326 (703)
T ss_pred eeeccccc--------------------CCCceEEe-cchHHhhhcccccCCceeecc-------ccCCcCceeeecCCc
Confidence 66666532 11233333 344789999977665543322 345588899999999
Q ss_pred EEEEeecCCeeEEEeec
Q 001363 748 AIFALASNGVHLMWRWP 764 (1092)
Q Consensus 748 ~l~~~~~dg~i~~w~~~ 764 (1092)
.++++-.++.+..|=++
T Consensus 327 m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIP 343 (703)
T ss_pred eEEEecCCCcceeEEcc
Confidence 89888888776666554
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-10 Score=121.48 Aligned_cols=326 Identities=13% Similarity=0.173 Sum_probs=200.2
Q ss_pred eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-----------CCC
Q 001363 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DDH 600 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----------~dg 600 (1092)
-+-+.|||.|.||++-...| |.+|--.+-..++.|.. ..|.-+.|||+.++|++-+ +..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 45689999999999987533 89998777666666653 4688999999999999854 225
Q ss_pred cEEEEECCCCceEEEEeCCCC-CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccc
Q 001363 601 VIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1092)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1092)
.++|||+.+|.....+..... ...-.-..||.|++++|.... .+|.||+...-.++....
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks------------------ 343 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS------------------ 343 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc------------------
Confidence 799999999999988876322 223346789999999998877 478888766422111100
Q ss_pred cccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeE
Q 001363 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759 (1092)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 759 (1092)
+ ....|..+.|+|.+..|+.-...
T Consensus 344 ---------------------l-------------------------------ki~gIr~FswsP~~~llAYwtpe---- 367 (698)
T KOG2314|consen 344 ---------------------L-------------------------------KISGIRDFSWSPTSNLLAYWTPE---- 367 (698)
T ss_pred ---------------------c-------------------------------CCccccCcccCCCcceEEEEccc----
Confidence 0 22335555666665433222111
Q ss_pred EEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe
Q 001363 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 839 (1092)
Q Consensus 760 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~ 839 (1092)
+.. .. ..+.+..+.+++.+++.
T Consensus 368 ---------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt~ 389 (698)
T KOG2314|consen 368 ---------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRTK 389 (698)
T ss_pred ---------------------------ccC-----------Cc--------------------ceEEEEecCccceeeec
Confidence 110 00 11223333333333332
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEE----------eCCCcEEEEEcCCcee-eEeeccccCCeEEEEEcCCCCEEEEEeC--
Q 001363 840 MPPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG-- 906 (1092)
Q Consensus 840 ~~~~~~i~~l~~s~~d~~~lasg----------~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~l~s~s~-- 906 (1092)
.-+.-.=..+-|-. .|.+|+.- +.=..+.|+.+..... +..+ .-...|...+|-|.|..+++.+.
T Consensus 390 nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~ 467 (698)
T KOG2314|consen 390 NLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNT 467 (698)
T ss_pred cceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccc
Confidence 22221112233433 44444431 1122466666665432 2222 25577889999999998887654
Q ss_pred -CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE----eCCcEEEEEcCCceeeeeeccCCCCCE
Q 001363 907 -DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVPI 981 (1092)
Q Consensus 907 -Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~~i~lwd~~~~~~~~~~~~~h~~~v 981 (1092)
..++.+|.+++.. .....+..++.. ....+.|||.|++++++ ..|.+..||..-..+...-...| ...
T Consensus 468 ~k~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~a 540 (698)
T KOG2314|consen 468 VKNTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAA 540 (698)
T ss_pred cccceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-ccc
Confidence 3578999988522 222344444432 36789999999999873 46789999988544443323334 345
Q ss_pred EEEEEecCCCEEEEEECC------CcEEEEEcCC
Q 001363 982 SQATFSCDCRMVFTSFVD------GTLSIHEASN 1009 (1092)
Q Consensus 982 ~~l~fs~dg~~l~t~~~D------g~i~vwd~~~ 1009 (1092)
+.+.|.|.|+|++|+++- ..-++|+...
T Consensus 541 t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 541 TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 678999999999999864 3455666553
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-09 Score=113.02 Aligned_cols=205 Identities=11% Similarity=0.087 Sum_probs=131.5
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceee-E
Q 001363 806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S 880 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~-~ 880 (1092)
..++++|||+++.+.. +..+.+.|+.+++.+..+.-.. ...-...+. +..+ +.+.||......+.+ |+.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence 3578889999888775 5789999999999988877533 222233332 2222 233455444443332 2211 1
Q ss_pred ---eeccccCCe-EEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc---C-CCCCceEEEEccCCCEE
Q 001363 881 ---KLEGHSKRV-TGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 881 ---~l~~h~~~V-~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~---~-~~~~v~~l~~s~dg~~l 951 (1092)
.+.+-..++ ..-.|++ ||+++..... |+|.+-|+...+......+....... . ..+...-+++++|++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 111100000 0014456 8888776666 99999998765544433333321110 0 01345569999999988
Q ss_pred EEEe---C--------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceEEeec
Q 001363 952 LLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 952 a~~~---d--------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
.+.. . +.|.++|..+++.+..+..+ ..+..++|||||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8731 1 57999999999999987765 4889999999999 777665 57889999999999998874
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-09 Score=116.22 Aligned_cols=269 Identities=14% Similarity=0.133 Sum_probs=170.6
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC----------CCEEEEEEcc
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH 426 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~----------d~~i~iwd~~ 426 (1092)
++|.+.|..+++.+..... |.. ...+ +||||+.|+++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~------------------G~~--P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG------------------GFL--PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEc------------------cCC--Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 8899999999888764221 111 1224 9999999988755 6789999999
Q ss_pred CCCcccceEEEcc--c---ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccE
Q 001363 427 GGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501 (1092)
Q Consensus 427 ~~~~~~~~~~~~~--h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 501 (1092)
+.+.+..+. +.. + ...-..++++|||+++++.--+.+..|.+.|+.+++.+.++....... -.. .++..
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~---t~e~~- 159 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFP---TANDT- 159 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEE---ecCCc-
Confidence 987765332 111 1 112347899999995333333458999999999999999887422111 111 11111
Q ss_pred EEEEecCCeEEEEEcCCCCceE-----EecCCCCce-EEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCC-----eEEE
Q 001363 502 IFSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKR 569 (1092)
Q Consensus 502 l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~i-~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~ 569 (1092)
...-+.||......++...... .+.....++ ..-.|++ +|++++... ++.|++.|+... ....
T Consensus 160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~ 234 (352)
T TIGR02658 160 FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIE 234 (352)
T ss_pred cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceee
Confidence 2233455555544443322211 111100010 0114456 888887765 367999995433 3333
Q ss_pred EEeecc----ccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC
Q 001363 570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1092)
Q Consensus 570 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1092)
.+.... ...+...-++++++++++++.. ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgk 311 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAK 311 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCC
Confidence 322111 1123344599999999998843 22579999999999999988643 478999999999
Q ss_pred -EEEEEe-CCCeEEEEECCCCceeeec
Q 001363 636 -LLAVIA-NENRIKILETPESNSVDAA 660 (1092)
Q Consensus 636 -~l~~~~-~dg~i~iw~~~~~~~~~~~ 660 (1092)
+|++.. .++.|.++|..+++.+..+
T Consensus 312 p~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777666 5788999999999888776
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-11 Score=118.29 Aligned_cols=155 Identities=12% Similarity=0.185 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCEEEEEeC----------CCcEEEEEcCC-ceeeEeecc-ccCCeEEEEEcCCCCEEEEE--eCCCcEEE
Q 001363 847 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV 912 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~l~s~--s~Dg~I~i 912 (1092)
..+.|+| .|.+|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 6666655433 13455555532 233444432 45679999999999987655 35679999
Q ss_pred EEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe----CCcEEEEEcCCceeeeeeccCCCCCEEEEEEec
Q 001363 913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC 988 (1092)
Q Consensus 913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~ 988 (1092)
||++.. .+..... ..+..+.|||+|++|+++. .|.+.+||+.+.+.+.... | ..++.++|||
T Consensus 88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEWSP 153 (194)
T ss_pred EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEEcC
Confidence 999732 2222222 1467899999999999842 4679999999888887632 3 3578999999
Q ss_pred CCCEEEEEEC------CCcEEEEEcCCCceEEeec
Q 001363 989 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 989 dg~~l~t~~~------Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
||++|++++. |+.++||+.. |+++.+..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999999875 7889999985 66665543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-11 Score=117.81 Aligned_cols=340 Identities=14% Similarity=0.183 Sum_probs=203.0
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
..++.++|+. +.++....-|..+-+++.+.|.+++||-- +.++.-..+.... ...+.++.+.++...|++|-.+|
T Consensus 15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecc
Confidence 3455677777 77888778888889999999999999954 4455444443322 24578999999999999999999
Q ss_pred eEEEEECCCC----ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccC
Q 001363 645 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 720 (1092)
Q Consensus 645 ~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~ 720 (1092)
++.-+.+... ...+....|...+..+-++ .....+++.+.|..+ .|.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~----------------------~~~e~V~s~~~dk~~-~~h------ 141 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS----------------------LTHEWVLSTGKDKQF-AWH------ 141 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEec----------------------CCceeEEEeccccce-EEE------
Confidence 9998876533 2333344555555555443 122233333332211 010
Q ss_pred ccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCC
Q 001363 721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 800 (1092)
Q Consensus 721 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~ 800 (1092)
.+ ..|. .+--|.+..
T Consensus 142 --------------------c~-e~~~---------~lg~Y~~~~----------------------------------- 156 (404)
T KOG1409|consen 142 --------------------CT-ESGN---------RLGGYNFET----------------------------------- 156 (404)
T ss_pred --------------------ee-ccCC---------cccceEeec-----------------------------------
Confidence 00 0000 000000000
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEE--EcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001363 801 SQEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
...++.+.-. +...|. .|.+.+- .......+.++.+|.+.+++++|.+ ...+|.+|..|..+.+||+...+
T Consensus 157 ---~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 157 ---PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred ---cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence 0000000000 122222 2333322 2334567888999999999999999 88999999999999999998654
Q ss_pred -eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec-----CC--------------------C
Q 001363 878 -VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT-----PD--------------------G 931 (1092)
Q Consensus 878 -~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-----~~--------------------~ 931 (1092)
....+.+|.+.|..+...+--+.|++++.||.|.+|+.+........-+.. .. .
T Consensus 231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h 310 (404)
T KOG1409|consen 231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQH 310 (404)
T ss_pred ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhh
Confidence 346778999999999998888999999999999999987643222111000 00 0
Q ss_pred Cc-CCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCc-------eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 001363 932 VM-TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL-------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1003 (1092)
Q Consensus 932 ~~-~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~-------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~ 1003 (1092)
+. ..+..+-..+-+....+...+.+-.+++-|.-.. ..+...-.. ...|+.+.+..+-.+|+|+|.|+.|+
T Consensus 311 ~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~ 389 (404)
T KOG1409|consen 311 HCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIK 389 (404)
T ss_pred hhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEE
Confidence 00 0000111111122222222244444555443211 112221111 45789999988888999999999999
Q ss_pred EEEcCCC
Q 001363 1004 IHEASNL 1010 (1092)
Q Consensus 1004 vwd~~~~ 1010 (1092)
|||+..-
T Consensus 390 iwd~~~v 396 (404)
T KOG1409|consen 390 IWDVRSV 396 (404)
T ss_pred EEechhh
Confidence 9998753
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-10 Score=130.17 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=146.8
Q ss_pred cceeeecccCCCCceEEeecCCCce--EEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHT--LLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~--llasg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
....+.|..+...+..-+|||||+. ++.+...+ ..|.+.++.+|+... +....+..
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~ 233 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQ 233 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCc
Confidence 3344556555567788899999975 33344444 358888888886554 22234455
Q ss_pred EEEEECCCCCEEEEEeC-----CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE--EC
Q 001363 400 NRVVWSPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DA 472 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~-----d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw--d~ 472 (1092)
...+|||||+.||..+. +-.+.+|++.++..-.......++.+.....+|+|||+. ++++...+|...+| ++
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEEC
Confidence 67899999999997653 223455777653211111112223334567899999995 23333356655555 44
Q ss_pred CC-CceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 473 VT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 473 ~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
.. +.....+..+...+....|+ +||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+...
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wS--PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWS--PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred cccccceEEeccCCCCccceeEC--CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEE
Confidence 32 33345555555566667774 467777766543 368999998876654332 234567789999999988765
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1092)
.. .+...|+++|+.+++......+ . +.+...+|+|-.
T Consensus 390 ~~-~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 390 GN-SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred CC-CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 43 3467799999988876554432 2 345667777643
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-10 Score=118.64 Aligned_cols=334 Identities=13% Similarity=0.183 Sum_probs=202.2
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----------C
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------K 465 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----------~ 465 (1092)
-.-+.+.|||-|.||++--..| |.+|--.+-..++ .+ .|.+ |..+.|||..+ +|+|-+.. .
T Consensus 211 WTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp~-Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 211 WTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHPG-VQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred ceeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCCC-ceeeecCCccc--eEEEecCCccccCcccCCCc
Confidence 3456799999999999998887 9999765544333 23 4665 89999999999 78886632 4
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
.++|||+.+|...+.|.... +..-.| .-+.||.|++++|
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~-----------------------~~~~~W------------------P~frWS~DdKy~A 321 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIK-----------------------SPYLKW------------------PIFRWSHDDKYFA 321 (698)
T ss_pred eEEEEEccccchhcceeccC-----------------------CCcccc------------------ceEEeccCCceeE
Confidence 57788888887776664211 111112 1257889999998
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceEEEEeCCC
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-----DHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-----dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
.... ..|.+++..+..++. .....-..|....|+|.++.|+.-+. -..+.+-.+.+++.+.+.....
T Consensus 322 rm~~-----~sisIyEtpsf~lld---~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn 393 (698)
T KOG2314|consen 322 RMTG-----NSISIYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN 393 (698)
T ss_pred Eecc-----ceEEEEecCceeeec---ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee
Confidence 7763 348888876644332 22222367888899999877766432 1245666667777666655432
Q ss_pred CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcc
Q 001363 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 700 (1092)
- .-..+-|-.+|.+|++--.-. ...+ ..+..
T Consensus 394 V--sDckLhWQk~gdyLcvkvdR~-------tK~~-------~~g~f--------------------------------- 424 (698)
T KOG2314|consen 394 V--SDCKLHWQKSGDYLCVKVDRH-------TKSK-------VKGQF--------------------------------- 424 (698)
T ss_pred e--eccEEEeccCCcEEEEEEEee-------cccc-------ccceE---------------------------------
Confidence 1 123456777788887543210 0000 00000
Q ss_pred ceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC---CeeEEEeecCCCcCcCcccccc
Q 001363 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTK 777 (1092)
Q Consensus 701 l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~ 777 (1092)
..+.|+.+...+ +......-...|-.++|-|.|..+++.+.+ .++.+|.+....
T Consensus 425 -------~n~eIfrireKd------Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~---------- 481 (698)
T KOG2314|consen 425 -------SNLEIFRIREKD------IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI---------- 481 (698)
T ss_pred -------eeEEEEEeeccC------CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC----------
Confidence 112222221100 000001134567889999999988877654 456666554311
Q ss_pred cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001363 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 853 (1092)
Q Consensus 778 ~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 853 (1092)
+...+...+ .......+.|+|.|++++.+. .|.+.++|+.-..+..+-.......+.+.|.|
T Consensus 482 ----------~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP 547 (698)
T KOG2314|consen 482 ----------KKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP 547 (698)
T ss_pred ----------Cchhhhhhh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC
Confidence 010111111 234556789999999999885 47899999875344333333345678899999
Q ss_pred CCCCEEEEEeCCC------cEEEEEcC
Q 001363 854 HDNNVIAIGMDDS------TILIYNAR 874 (1092)
Q Consensus 854 ~d~~~lasg~~dg------~v~iwd~~ 874 (1092)
.|+|+++++... --+||++.
T Consensus 548 -tGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 548 -TGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred -CCCEEEEeeehhhhccccceEEEEee
Confidence 899999988644 34555554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-09 Score=114.45 Aligned_cols=249 Identities=15% Similarity=0.220 Sum_probs=160.7
Q ss_pred CCcEEEEEECCCCCEEEEEeC----CCEEEEEEccCC-CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 396 GVSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~----d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
......++++|++++|.+... ++.|..|++... ..+...............++++|++++ ++++...+|+|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 356677999999999999866 578999998875 333333333323345568999999994 34444568999999
Q ss_pred ECCC-CceeEE---Ee--c--------CCcCeEEEeecccCCccEEEEEe-cCCeEEEEEcCCCCc-e---EEe-cCCCC
Q 001363 471 DAVT-GSRTYS---FE--G--------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-R---VDY-DAPGL 530 (1092)
Q Consensus 471 d~~~-~~~~~~---~~--~--------~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~-~---~~~-~~~~~ 530 (1092)
++.. |..... +. + ......++.+ +++++++++.. ....|.+|+++.... . ..+ ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 443322 21 1 1223456666 45667776654 345799999987662 1 122 23455
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeE--EEEEeecc---ccCCceEEEEEcCCCCEEEEEe-CCCcE
Q 001363 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVI 602 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s-~dg~i 602 (1092)
..+.++|+|+++++++... ..+.|.+++.. ++.. +..+.... ........+.++||+++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7889999999999988764 35567777776 5533 22222211 1112578899999999998865 66789
Q ss_pred EEEECC--CCce--EEEEeCCCCCCCCceEEEccCCCEEEEEeC-CCeEEEEECC
Q 001363 603 KIWDMN--KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1092)
Q Consensus 603 ~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~ 652 (1092)
.+|++. ++.+ +..+...+ .....++++|+|++|+++.. ++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999983 3443 33333322 23589999999999998874 6789999764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-10 Score=127.14 Aligned_cols=243 Identities=12% Similarity=0.077 Sum_probs=151.1
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE---EEeCC--CEEEEEEccCCCcc
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDA 431 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~ 431 (1092)
..|.+.|.+.+.... ++.....+..-+|||||+.++ +...+ ..|.+.++.+|+..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367777877665442 444556677889999998633 33333 36888899887643
Q ss_pred cceEEEcccccceeEEEEecCCCcEEEEEEeC----CCcEEEEECCCC---ceeEEEecCCcCeEEEeecccCCccEEEE
Q 001363 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFS 504 (1092)
Q Consensus 432 ~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d~~i~vwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s 504 (1092)
+ +....+.....+|||||+++ +++... |-.+.+|++.++ +......++.......+| ++||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEE
Confidence 2 33344455678999999953 333322 333455777653 333333233233455667 557777766
Q ss_pred Ee-cCCeEEEEEc--CC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc
Q 001363 505 IS-VDGKIKAWLY--DS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580 (1092)
Q Consensus 505 ~~-~dg~i~vwd~--~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 580 (1092)
.+ .+|...+|.+ +. ......+......+....|+|||+.|+..+.. .+...|++||+.+++......+ . ..
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~ 372 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---EN 372 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CC
Confidence 55 5676566644 32 22233344444566788999999999887653 2356799999998876544332 2 35
Q ss_pred eEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 581 VSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 581 v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
+....|+|||+.|+..+. ...|+++|+.+++........ ..+...+|+|-.
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGS---GEKRFPSWGAFP 426 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC---CcccCceecCCC
Confidence 667899999998876442 356888999887765544322 235667887743
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6e-11 Score=117.66 Aligned_cols=265 Identities=12% Similarity=0.182 Sum_probs=176.0
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeec-ccccceeeEeeecCCCCcEEEEEECCCCC--E
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI-GACSMLFKTALVRDPGVSVNRVVWSPDGS--L 410 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~-~~~~~~~~~~~l~~h~~~V~~l~~spdg~--~ 410 (1092)
.+-|.+|.|..+|. +||+|..+|.|.++.-+.... . ++.++-. ......|....--.-...|..+.|.+++. .
T Consensus 25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hcceeeEEeecccc-eEeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 56899999999999 699999999999997543221 0 1111100 00111111111112346789999999764 5
Q ss_pred EEEEeCCCEEEEEEccCCCccc------------------c--------------eEE-EcccccceeEEEEecCCCcEE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQIS 457 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~~~~s~d~~~l~ 457 (1092)
++..+.|.+|++|.+....... . ... -.+|+.-|+++.++.|+. .
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t 178 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--T 178 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--e
Confidence 5666789999999986432111 0 001 136888899999999998 5
Q ss_pred EEEEeCCCcEEEEECCCCcee---EEEec-----CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc------eE
Q 001363 458 VITCGDDKTIKVWDAVTGSRT---YSFEG-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA------RV 523 (1092)
Q Consensus 458 l~s~~~d~~i~vwd~~~~~~~---~~~~~-----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~~ 523 (1092)
++++. |=.|.+|+++--..- ..++. .+..|++..|+|... ..++-.+..|+|++.|++.... ..
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 66655 788999998743222 22222 335678888988744 6888889999999999984321 11
Q ss_pred EecC----------CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC-CCCeEEEEEeecccc---------CCce--
Q 001363 524 DYDA----------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIKRTYQGLQLQ---------HNSV-- 581 (1092)
Q Consensus 524 ~~~~----------~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~~---------~~~v-- 581 (1092)
.... --..|..+.|+++|+++++-. -.+|.+||+ ...+.+.+++.|..- .+.|
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence 1111 112578899999999999853 457999999 456677777666421 1222
Q ss_pred -EEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001363 582 -SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 582 -~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
..++|+.++.++++|+....+++++...|.
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 347899999999999999999999965543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-10 Score=131.22 Aligned_cols=229 Identities=13% Similarity=0.093 Sum_probs=144.4
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
...+.+..+.+.+...+|||||++++.+...+ ..|.+||+.+|+... +....+.+...
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~ 248 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAP 248 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCe
Confidence 34455666777899999999999655554333 368999999887543 22233445578
Q ss_pred EECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCce
Q 001363 403 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSR 477 (1092)
Q Consensus 403 ~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~ 477 (1092)
+|||||++|+.. +.++ .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|.++|+.+++.
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCE
Confidence 999999999854 3344 6888899887532 34455566777899999995 233333333 577888888774
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecC-C--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
.. +...........|+ +|++.++..+.+ + .|.+||+.++........ .......|+|||+.++..... .+.
T Consensus 324 ~~-lt~~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g~ 397 (430)
T PRK00178 324 ER-VTFVGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QGR 397 (430)
T ss_pred EE-eecCCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CCc
Confidence 33 22112222334554 466777766543 3 477888887654332221 222356899999999887653 335
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
..+++++...+ ..+.+.... +.+...+|+|
T Consensus 398 ~~l~~~~~~g~-~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 398 GVLMLVSINGR-VRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred eEEEEEECCCC-ceEECcCCC---CCcCCCccCC
Confidence 66888887543 333444332 4455566665
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-09 Score=105.42 Aligned_cols=252 Identities=13% Similarity=0.178 Sum_probs=172.3
Q ss_pred CCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCC--ceee--EEecCCCCCeEEEEEcCCCCCEEEEEeC-CCcEEEE
Q 001363 801 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMD-DSTILIY 871 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg~v~iw 871 (1092)
....++-++++|+++.|.++. +|.|..|.+.. |+.. ........+-+.+++++ ++++|+++.. -|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566778899999999888875 36788887764 4432 22222233448899999 8988888875 4799999
Q ss_pred EcCC-ceee--EeeccccCC----------eEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001363 872 NARS-SEVI--SKLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 872 d~~~-~~~~--~~l~~h~~~----------V~~l~~spdg~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
.+.. |.+. .....|.+. +....|.|++++|++.+ .|+ |.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9965 4322 122236555 88899999999999875 465 9999999877555444444333
Q ss_pred CCceEEEEccCCCEEEEE--eCCcEEEEEcCCc-eeeeee------ccC--CCCCEEEEEEecCCCEEEEEEC-CCcEEE
Q 001363 937 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL-TCLKQW------FPI--SSVPISQATFSCDCRMVFTSFV-DGTLSI 1004 (1092)
Q Consensus 937 ~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~-~~~~~~------~~~--h~~~v~~l~fs~dg~~l~t~~~-Dg~i~v 1004 (1092)
...+.++|+|++++..+. -+++|.+|..... ..+..+ ... -......+..++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 357899999999988774 5689999998763 222111 111 1556778999999999998753 347888
Q ss_pred EEcCCCce-EEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCC-cEEEEecCCCCCcc
Q 001363 1005 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTW 1067 (1092)
Q Consensus 1005 wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-~v~~w~~~~~~~~~ 1067 (1092)
+.+....- +.... +.+ .....|..+.++| ++++|+++..++ .|.+|.+....++.
T Consensus 271 f~V~~~~g~L~~~~---~~~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 271 FSVDPDGGKLELVG---ITP----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EEEcCCCCEEEEEE---Eec----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 88765422 22221 111 2235577788998 467777776655 79999998776654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-10 Score=131.07 Aligned_cols=228 Identities=14% Similarity=0.106 Sum_probs=141.2
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCC--cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..+.+..+...+.+.+|||||++++.+...++ .|.+||+.+++.... ....+.....+
T Consensus 209 ~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~ 268 (448)
T PRK04792 209 NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPR 268 (448)
T ss_pred CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCee
Confidence 34556666778999999999996555443333 588899988875431 11222344689
Q ss_pred ECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCcee
Q 001363 404 WSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT 478 (1092)
Q Consensus 404 ~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~ 478 (1092)
|||||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++..
T Consensus 269 wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 269 FSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred ECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEE
Confidence 99999988764 4555 4788888876532 34455556778899999995 333343344 4667788777654
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
. +..........+| ++||++|+..+. ++. |.++|+.++.... +... .......|+|||+.++..... .+..
T Consensus 344 ~-Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~ 417 (448)
T PRK04792 344 R-LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQ 417 (448)
T ss_pred E-EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCce
Confidence 3 2222222334466 446667766554 444 4556766655433 2221 122345899999999887653 3456
Q ss_pred eEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
.+++++. +|.....+.... +.+...+|+|
T Consensus 418 ~l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 418 VLAAVSI-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred EEEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence 6888887 455555555443 4566667776
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-10 Score=116.70 Aligned_cols=116 Identities=13% Similarity=0.176 Sum_probs=102.9
Q ss_pred CCeeEEEEecC--CCEEEEEe-CCeEEEEEcCCce-eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001363 803 EAVPCFALSKN--DAYLFSAS-GGVISLYIVMTFK-TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 803 ~~v~~~~~s~d--g~~l~~~s-dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
-.++++.|-+. ...+|++. -+.+++||...++ ++..+.--..+++++...| +++++++|..-|.+..||+.+++.
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCcee
Confidence 34567778777 77888887 5999999998764 5677777788999999999 999999999999999999999998
Q ss_pred eEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001363 879 ISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 879 ~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 919 (1092)
... +.+-.+.|+++..+|.+++||++|-|+.|||+|+++..
T Consensus 282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 877 88999999999999999999999999999999999844
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-10 Score=113.82 Aligned_cols=162 Identities=19% Similarity=0.336 Sum_probs=114.2
Q ss_pred EEEEECCCCCEEEEEeC----------CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 400 NRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~----------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
..+.|+|+|++|++-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.++.|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 45889999999887533 1245666664332222221222 345799999999999766666777889999
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
||++ ++.+..+. ...++.+.|+| +|++|++++.+ |.|.+||.+..+.+.... ...+..++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9986 66676664 56788899955 67899988754 679999999666655443 335789999999999998
Q ss_pred EecC--CCCceeEEEEeCCCCeEEEE
Q 001363 547 CGTS--KEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 547 ~~~~--~~~~~~i~iwd~~~~~~~~~ 570 (1092)
+... ...++.+.||+.. |+.+..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 8753 1235668899874 555444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-09 Score=125.92 Aligned_cols=237 Identities=14% Similarity=0.102 Sum_probs=150.1
Q ss_pred cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccce
Q 001363 358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQ 434 (1092)
Q Consensus 358 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~ 434 (1092)
.|.++|.+.+.... +..+...+...+|||||++|+..+.+ ..|.+||+.+++...
T Consensus 180 ~l~~~d~~g~~~~~--------------------l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-- 237 (430)
T PRK00178 180 TLQRSDYDGARAVT--------------------LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-- 237 (430)
T ss_pred EEEEECCCCCCceE--------------------EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--
Confidence 47778877654332 44577789999999999999887643 469999999875322
Q ss_pred EEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe-cCC--
Q 001363 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDG-- 509 (1092)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg-- 509 (1092)
+....+.+...+|+|||+. ++++.+.++ .|.+||+.+++.. .+..+........|+ +|++.++..+ .+|
T Consensus 238 --l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~ 311 (430)
T PRK00178 238 --ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKP 311 (430)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCc
Confidence 3333445567899999995 333454454 6888899887654 454455555556674 4666665554 344
Q ss_pred eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001363 510 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 510 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
.|.++++.+++.... ...........|+|||+.++...... +...|+++|+.+++....... . ......|+|+
T Consensus 312 ~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spd 384 (430)
T PRK00178 312 QIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPN 384 (430)
T ss_pred eEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCCEEEccCC-C----CCCCceECCC
Confidence 466667766554322 22223334578999999998876432 345699999998865433222 1 1224589999
Q ss_pred CCEEEEEeCC---CcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 590 KDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 590 ~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
|+.++..+.+ ..+.+++... .....+..+. ..+...+|+|
T Consensus 385 g~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~ 427 (430)
T PRK00178 385 GTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP 427 (430)
T ss_pred CCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence 9999876643 3466777753 3333443322 2355666765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-10 Score=110.38 Aligned_cols=357 Identities=14% Similarity=0.212 Sum_probs=211.9
Q ss_pred ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-----eeEEEecCC------------cCeEEEeecccCCccEEE
Q 001363 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF 503 (1092)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~~~~~~l~ 503 (1092)
...|.++.|...|. +|++|..+|.|.++.-+... ....++.|. ..|+.+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 44688999999999 89999999999999643222 223344443 357788888888888899
Q ss_pred EEecCCeEEEEEcCCCCceEE-----ecCCCCceEEEEE---ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 504 SISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 504 s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~i~~~~~---s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
..+.|.+|++|.+........ .......++++.. .+....+. ..+.+.+..
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN-- 161 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN-- 161 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc--
Confidence 999999999998876544331 1111112222211 11111111 111222221
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eEEEEeCCCC-----CCCCceEEEcc-CCCEEEEEeCCCeEEE
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGG-----LPENPRICFNK-NGTLLAVIANENRIKI 648 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~-----~~~v~~v~~s~-~~~~l~~~~~dg~i~i 648 (1092)
.|...|.++.++.|...++++. |=.|.+|+++--. .......... ...|++..|+| ..++++-.+..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 1247799999999998888764 6779999987432 2222221111 12367888999 4567788888899999
Q ss_pred EECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001363 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~ 728 (1092)
-|++....-.. .-+++..
T Consensus 241 cDmR~~aLCd~-------------------------------------------------hsKlfEe------------- 258 (433)
T KOG1354|consen 241 CDMRQSALCDA-------------------------------------------------HSKLFEE------------- 258 (433)
T ss_pred eechhhhhhcc-------------------------------------------------hhhhhcc-------------
Confidence 99874321110 0011110
Q ss_pred CCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001363 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808 (1092)
Q Consensus 729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~ 808 (1092)
|. .|..+. ... +--..|..+
T Consensus 259 pe------------dp~~rs------------------------------------------ffs------eiIsSISDv 278 (433)
T KOG1354|consen 259 PE------------DPSSRS------------------------------------------FFS------EIISSISDV 278 (433)
T ss_pred cc------------CCcchh------------------------------------------hHH------HHhhhhhce
Confidence 00 000000 000 123456778
Q ss_pred EEecCCCEEEEEeCCeEEEEEc-CCceeeEEecCCC------------CCe---EEEEEcCCCCCEEEEEeCCCcEEEEE
Q 001363 809 ALSKNDAYLFSASGGVISLYIV-MTFKTILTIMPPS------------PTA---TSLAFNPHDNNVIAIGMDDSTILIYN 872 (1092)
Q Consensus 809 ~~s~dg~~l~~~sdg~i~iwd~-~~~~~~~~~~~~~------------~~i---~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1092)
.|+++|+|+++-+--+|++||+ ...+++.+++-|. ..| ..++|+- ++.+++||+....+++|+
T Consensus 279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence 8999999998887788999998 4555666555443 122 4678988 788999999999999999
Q ss_pred cCCceee-EeeccccCC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 873 ARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 873 ~~~~~~~-~~l~~h~~~--V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
+..|... .++...... ...+ ..-+.+.+++......+|-.. .+- ...+...+|+|..+
T Consensus 358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ldf----~kkilh~aWhp~en 418 (433)
T KOG1354|consen 358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LDF----RKKILHTAWHPKEN 418 (433)
T ss_pred CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hhh----hhHHHhhccCCccc
Confidence 7766432 333322221 1111 112334444443332222110 000 01467789999999
Q ss_pred EEEEEeCCcEEEEE
Q 001363 950 RFLLVHETHLAIYE 963 (1092)
Q Consensus 950 ~la~~~d~~i~lwd 963 (1092)
.+|++.-+.+++|.
T Consensus 419 ~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 419 SIAVAATNNLYIFQ 432 (433)
T ss_pred eeeeeecCceEEec
Confidence 99998777787763
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-10 Score=130.12 Aligned_cols=215 Identities=19% Similarity=0.164 Sum_probs=140.5
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~ 401 (1092)
....+.+..+...+...+|||||++++.+...+ ..|.+||+.+++... +..+...+.+
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~ 238 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGA 238 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence 334456666777899999999999654443322 479999999886543 2235556778
Q ss_pred EEECCCCCEEEEE-eCC--CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-CCC--cEEEEECCCC
Q 001363 402 VVWSPDGSLLGVA-YSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTG 475 (1092)
Q Consensus 402 l~~spdg~~las~-~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~--~i~vwd~~~~ 475 (1092)
++|+|||+.|+.. +.+ ..|.+||+.++... .+..+........|+|||++ |+..+ .++ .|.++|+.++
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCC
Confidence 9999999988754 333 35888999876432 24445555667899999994 44433 333 5888888777
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
+. ..+..+...+....|+ +++.+++.++.++ .|.+||+.+..... +... .......|+|||++|+.....+
T Consensus 313 ~~-~~l~~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~- 386 (417)
T TIGR02800 313 EV-RRLTFRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG- 386 (417)
T ss_pred CE-EEeecCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC-
Confidence 64 3444455556666774 4677888887775 78888887744332 2222 2334568999999998877643
Q ss_pred CceeEEEEeCCCCeEEEEE
Q 001363 553 GESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~ 571 (1092)
+...+++.+.. +.....+
T Consensus 387 ~~~~l~~~~~~-g~~~~~~ 404 (417)
T TIGR02800 387 GRGVLGLVSTD-GRFRARL 404 (417)
T ss_pred CcEEEEEEECC-CceeeEC
Confidence 34556666643 4443444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-10 Score=127.49 Aligned_cols=210 Identities=15% Similarity=0.075 Sum_probs=138.4
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--c
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~ 466 (1092)
+..+...+...+|||||++||.+..+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44567789999999999999988643 47999999987532 23345566778999999985 334444444 5
Q ss_pred EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-CC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001363 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
|++||+.++... .+..+........|+ +|++.|+..+. ++ .|.++|+.+.+. ..+...........|+|+|++
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 889998887643 344444444455664 46777766554 33 477777765543 333334455677899999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEe
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~ 617 (1092)
++.+.... +...|++||+.++.... +... .......|+|++++|+..+.++ .+++.+. ++.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 99887533 34579999998865432 2221 1234457999999998876544 3455554 344444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.7e-10 Score=126.03 Aligned_cols=223 Identities=15% Similarity=0.109 Sum_probs=140.9
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-- 466 (1092)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44567789999999999999987543 368999998875322 2222334457899999995 3344556664
Q ss_pred EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe-cCCe--EEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001363 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
|.+||+.+++. ..+..+.......+|++ |++.|+..+ .+|. |.++|+.+++... +..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence 77889887764 34444555556677754 666665554 3444 5555666554332 2222233345789999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEEEeCCC
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH--VIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~ 620 (1092)
++..+.. .+...|.++|+.+++... +.... ......|+|+++.++..+. ++ .+++++. +|.....+..+.
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9887653 234568889998887543 22211 1123479999999877553 33 3677776 455555555432
Q ss_pred CCCCCceEEEcc
Q 001363 621 GLPENPRICFNK 632 (1092)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1092)
..+...+|+|
T Consensus 437 --g~~~~p~Wsp 446 (448)
T PRK04792 437 --GEVKSPAWSP 446 (448)
T ss_pred --CCcCCCccCC
Confidence 2356677776
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-11 Score=117.09 Aligned_cols=358 Identities=14% Similarity=0.138 Sum_probs=227.7
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
..++.++||.+.|+.....+..+ -+++.+.|.++|+|--+...+.. .......+++++.+.++.+.|+++-.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---- 88 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---- 88 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----
Confidence 34567789999998887766554 59999999999999654433322 23334557899999999999998875
Q ss_pred ceeEEEEeC----CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 554 ESFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 554 ~~~i~iwd~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
++.+.-+.. +.....+.+..|. ..+..+-|+....++++.+.|..+.---.+.+..+........ ..++.
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~ 162 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQ 162 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCc
Confidence 445666544 3444556666666 8899999999889999999988776444455554433222111 11122
Q ss_pred EccCCCEEEEEeCCCeEEEEECC--CCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 630 FNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
+.-. +..+|...|.+.+..+. .-..+..+.+|...+.++++. +....+.++..|
T Consensus 163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d 218 (404)
T KOG1409|consen 163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASD 218 (404)
T ss_pred eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEecccc
Confidence 2211 55666667777766554 346788899999999999997 557788999999
Q ss_pred cccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccc-----cCCcc
Q 001363 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK-----VPPRL 782 (1092)
Q Consensus 708 ~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~-----~~~~~ 782 (1092)
..+.+||+........ ...+|...|..+...+--+.+++++.||.|.+|+++.......+..... ..+..
T Consensus 219 ~~vi~wdigg~~g~~~-----el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpff 293 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAY-----ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFF 293 (404)
T ss_pred CceEEEeccCCcceee-----eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHH
Confidence 9999999875444333 2345888899999888899999999999999999987654333332221 22333
Q ss_pred ccCCCCCceeeecCCCC--CC-CCCeeEEEEecCCCEEEEEeCCeEEEEEcC-------CceeeEEecCCCCCeEEEEEc
Q 001363 783 YQPRHGPQFMVNDTTDS--NS-QEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFN 852 (1092)
Q Consensus 783 ~~~~~g~~~~~~~l~~~--~~-~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s 852 (1092)
|+...--.....-+... .+ ...+...+-+.-..+...+.+-.+|+-|.- +...+..+......|+++.+.
T Consensus 294 wn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlq 373 (404)
T KOG1409|consen 294 WNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQ 373 (404)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhh
Confidence 33221100000000000 01 112222222222222222323334444421 112233343344679999998
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCC
Q 001363 853 PHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 853 ~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
. .-.+|+|++.|..|+|||+..
T Consensus 374 e-tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 374 E-TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred h-hccceeecCCceEEEEEechh
Confidence 8 677999999999999999874
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=115.97 Aligned_cols=170 Identities=21% Similarity=0.264 Sum_probs=126.3
Q ss_pred chhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhccCC--CcCCccccch
Q 001363 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFT--KVDDNRYSTK 71 (1092)
Q Consensus 3 ~~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~ 71 (1092)
..++|+-|||+.||-..||.++|+.+.+|+||..+ -..+|.+|..|+-++|++.+.++- .++.+. .
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---E 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---h
Confidence 46789999999999999999999999999999761 477899999999999999999873 234332 3
Q ss_pred hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccc-cccCCChHHHHHHHHHHHh
Q 001363 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLS-KYYGDALSARKNMMLELKQ 150 (1092)
Q Consensus 72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~r~~l~~~l~~ 150 (1092)
+.|-+.+|+++|++..+...+|++++|++|.|+...++..++.|...|....++....-. .| --....|.++..++..
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s~R~kvA~~vN~ 179 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQSLRQKVASEVNS 179 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999988877788777766654433111100 00 0123456666667666
Q ss_pred hcccCcccccccCCCCCccHHHHHHHHHHHHHHH
Q 001363 151 IIEANPILQGKLKFPSIKRQRLRRLINQSLNWQH 184 (1092)
Q Consensus 151 ~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~ 184 (1092)
.|-...- .. -..+|..|++.-+..|.
T Consensus 180 aiL~~~~---~~-----~~~~l~~llk~~~~~~~ 205 (228)
T KOG2659|consen 180 AILASQE---HE-----SEPKLPFLLKLISWAQE 205 (228)
T ss_pred HHHHHhc---cc-----ccchHHHHHHHHHHHHH
Confidence 5543211 11 24578888866666553
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-09 Score=115.57 Aligned_cols=194 Identities=12% Similarity=0.179 Sum_probs=155.3
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEe------c------------CCCcEEEEEEeCCCc
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT 466 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~------------d~~~l~l~s~~~d~~ 466 (1092)
.|.+.|+|....||.++||+...++....+.....-++..++..|. | .+.+..++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567899999999999999999987554333222233444455542 1 123347888999999
Q ss_pred EEEEECCCCceeEEEe--cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001363 467 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1092)
|.+|+...|+....+. .|.+.|+++.++. +-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999988885 6899999988743 44689999999999999999988888888888899999999999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-----CCEEEEE-eCCCcEEEEECCC
Q 001363 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILAA-GDDHVIKIWDMNK 609 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-s~dg~i~iwd~~~ 609 (1092)
++++. .|.+||+++++.+..|.||. ++|.++.|..+ |.+++++ ..+..+.+|-+..
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98853 59999999999999999999 99999999877 6777764 4556677886554
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-09 Score=113.82 Aligned_cols=188 Identities=15% Similarity=0.231 Sum_probs=148.0
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCceeeEEecCC---CCCeEEEEE------cC-------------CCCCEEEEEeCCCcE
Q 001363 812 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPP---SPTATSLAF------NP-------------HDNNVIAIGMDDSTI 868 (1092)
Q Consensus 812 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~------s~-------------~d~~~lasg~~dg~v 868 (1092)
|.+.++|... ||.+++|+...++....+.+. .+..++..| +| .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456777775 799999999999887777542 223333333 11 155688889999999
Q ss_pred EEEEcCCceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEcc
Q 001363 869 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 946 (1092)
.+|+...|+....+. .|.+.|.++.++.+-..|-|++.|+.+..|+..... .+........ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999888886 499999999999999999999999999999999844 3333333333 588999999
Q ss_pred CCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecC-----CCEEEEE-ECCCcEEEEEcCC
Q 001363 947 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFTS-FVDGTLSIHEASN 1009 (1092)
Q Consensus 947 dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~t~-~~Dg~i~vwd~~~ 1009 (1092)
||..++++ .++|++||+++++.+.. +.||.++|.++.|-.+ |.+++++ ..+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988874 46899999999999987 7899999999999887 6776654 3556688887765
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-08 Score=111.54 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=112.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 536 (1092)
.++.++.++.|..+|..+|+.+............... ++..++.++.+|.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5778888999999999999998776544332222222 446788889999999999998888776554332111111
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
+ .+..++.+.. ++.++.||..+|+.+-.+.... ... ...... +..++.+..++.+..+|..+|+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 2 2345555543 5679999999999877665432 111 111111 2467888889999999999998
Q ss_pred eEEEEeCCCCC--CCC---ceEEEcc--CCCEEEEEeCCCeEEEEECCCC
Q 001363 612 LLTTIDAGGGL--PEN---PRICFNK--NGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 612 ~~~~~~~~~~~--~~v---~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.+......... ..+ ..+.-+| .+..+++++.+|.+..||..++
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 77654322110 000 0000011 2445666666666666666544
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-07 Score=107.39 Aligned_cols=210 Identities=9% Similarity=0.060 Sum_probs=125.7
Q ss_pred eCCeEEEEEcCCceeeEEecCCCCCe-----EEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC----C---
Q 001363 821 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R--- 888 (1092)
Q Consensus 821 sdg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~----~--- 888 (1092)
.++.+..||.++|+.+..+....... .+..+. + ..++.+..+|.+..+|..+|+.+........ .
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 35677777777777666554322211 111222 3 3677788899999999999987755431100 0
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcC
Q 001363 889 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAE 965 (1092)
Q Consensus 889 V~~l~~sp--dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~ 965 (1092)
+..+.-+| .+..+..++.+|.+..||..+++..-... ... ....+ .++..+.+ ..++.+..+|..
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEECC
Confidence 00010011 35577778889999999999886432111 111 11122 23444544 678999999999
Q ss_pred CceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCE
Q 001363 966 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1045 (1092)
Q Consensus 966 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~ 1045 (1092)
+|+.+............+... .+..|++++.+|.|+++|..+|+.+.++.... ..+... -++. ++.
T Consensus 298 tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--------~~~~~s-p~~~---~~~ 363 (377)
T TIGR03300 298 SGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--------SGIASP-PVVV---GDG 363 (377)
T ss_pred CCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CccccC-CEEE---CCE
Confidence 998775431111112222222 46688899999999999999999998776222 111110 1122 356
Q ss_pred EEEEeCCCcEEEEe
Q 001363 1046 FAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1046 l~~~~~dg~v~~w~ 1059 (1092)
|++++.||.|+.|.
T Consensus 364 l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 364 LLVQTRDGDLYAFR 377 (377)
T ss_pred EEEEeCCceEEEeC
Confidence 88999999998763
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-08 Score=99.36 Aligned_cols=251 Identities=15% Similarity=0.112 Sum_probs=161.2
Q ss_pred CceEEeec---CCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC---cEEEEEECCCCC
Q 001363 336 SPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGS 409 (1092)
Q Consensus 336 ~V~~v~~s---pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~ 409 (1092)
.+..+.|. .+|...++-+..+|.|.++.....+..... + + +..-.- .-.++.|++.|.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L--~---------~-----ls~~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL--R---------G-----LSSKKISVVEALSLDISTSGT 134 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee--c---------c-----cchhhhhheeeeEEEeeccCc
Confidence 56666664 244445666677788888876543322210 0 0 111111 234678999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC-CCceeEE-EecCCcC
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP 487 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~-~~~~~~~ 487 (1092)
.++++..+|.+.+-+..... +....++++|....+-+.|+..... ++.+||.|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999988855544332 3333468899999999999877665 89999999999999998 4455543 5678888
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC--CEEEEEecCCCCceeEEEEeCCC-
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESE- 564 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~~- 564 (1092)
|.++.-++. .+.++++|+.|-.|++||.++......-....+.|..+..+|.- +.|++|--++ ..+.+.+.
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence 998876654 66899999999999999999766655555566889999999853 3444443322 33444332
Q ss_pred -CeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEE-EEECCCC
Q 001363 565 -GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV 610 (1092)
Q Consensus 565 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~-iwd~~~~ 610 (1092)
.+....+..+..|..-.+.-.|......+++++ .|+.++ +|-..++
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 221122333332225555555544445577755 556544 6654443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-07 Score=117.10 Aligned_cols=260 Identities=12% Similarity=0.090 Sum_probs=162.1
Q ss_pred EEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCE
Q 001363 738 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 816 (1092)
Q Consensus 738 ~~l~~s~~-g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~ 816 (1092)
..++++++ +..+++-..++.|.+|+.........+.... .....|. +. ...-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~------~G~~dG~------~~-~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE------EGLRDGS------FE-DATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC------cCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence 45788764 5566666667888888754321100000000 0000010 00 012234578999999887
Q ss_pred EEEEe--CCeEEEEEcCCceeeEEecCC-----------------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001363 817 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 817 l~~~s--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
|.++. .+.|+++|..++. +.++.+. -.....++|+|+++.++++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77665 4779999987754 3333210 11336799999566677777788999999998775
Q ss_pred eeEeecc---------c------cCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeee--------eeecC---C
Q 001363 878 VISKLEG---------H------SKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCR--------SLQTP---D 930 (1092)
Q Consensus 878 ~~~~l~~---------h------~~~V~~l~~spdg~-~l~s~s~Dg~I~iwd~~~~~~~~~~--------~~~~~---~ 930 (1092)
.. .+.+ + -.....++++||++ ++++-+.++.|++||+.++...... .+... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 1111 1 12356799999998 4555667789999999876532100 00000 0
Q ss_pred CC--cCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccC------------CCCCEEEEEEecCCCEEEE
Q 001363 931 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT 995 (1092)
Q Consensus 931 ~~--~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t 995 (1092)
+. .........++++++|.++++ ..+++|++||..++......-.+ .-.....+++++||+.+++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000113468999999997777 67889999999877655322111 1235778999999999998
Q ss_pred EECCCcEEEEEcCCCce
Q 001363 996 SFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 996 ~~~Dg~i~vwd~~~~~~ 1012 (1092)
-+.+++|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999999876
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-08 Score=108.25 Aligned_cols=205 Identities=14% Similarity=0.029 Sum_probs=129.3
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcC---CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.+.+.... .+....|||||+++++..+. +..|.++|+.+|+... +....+.+...+
T Consensus 181 ~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~ 239 (419)
T PRK04043 181 QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSD 239 (419)
T ss_pred eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeE
Confidence 34343333 77889999999864453333 3569999999887654 223445667788
Q ss_pred ECCCCCEEEEEeC---CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCcee
Q 001363 404 WSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT 478 (1092)
Q Consensus 404 ~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~ 478 (1092)
|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++++ ...+ .|.+.|+.+|+..
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCCeE
Confidence 9999998876532 35688888887752 2 2333443344568999999744443 2233 6888898888764
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecC---------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
+.... ... ...| ++||+.|+..+.. ..|.+.|++++.... +... .......|+|||+.++....
T Consensus 315 rlt~~-g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 315 QVVFH-GKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred eCccC-CCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEc
Confidence 43321 111 1255 5577777666543 257777877765433 3222 23335889999999988765
Q ss_pred CCCCceeEEEEeCCCC
Q 001363 550 SKEGESFLVEWNESEG 565 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~ 565 (1092)
. .+...+.+.++...
T Consensus 388 ~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 388 L-GNQSALGIIRLNYN 402 (419)
T ss_pred c-CCcEEEEEEecCCC
Confidence 4 33556778887544
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=112.90 Aligned_cols=244 Identities=14% Similarity=0.220 Sum_probs=170.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC-Cccc---ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+.||+..|..++--.+.+-+++++.|++|++|.+... ..+. ...++..|+.+|.++.|..|-+ .++++ ||.|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcc
Confidence 7899999999988888889999999999999998742 2222 4557789999999999999988 57665 8899
Q ss_pred EEEECCCCceeEEEec--CCcCeEEEeecccCCccEEEEE-ecCCeEEEEEcCCCCceEEec-----CCCCceEEEEEcc
Q 001363 468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYD-----APGLGCTRMAYSA 539 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~-----~~~~~i~~~~~s~ 539 (1092)
.+||.--|+.+..+.. ..+.+..+...++-+..+++.| +...+|+++|.+..+-...+. ++..-+.+++..+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999988887754421 1122222332234355566665 788999999998877555443 3445688999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE-EECCCCceEEEEeC
Q 001363 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA 618 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~ 618 (1092)
.|+.++++-. +++|.+.|.++|+.+....... -....++ .|..+.++....|.++.+ |..-+|....+...
T Consensus 887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 9999998865 6779999999999887665443 2222222 244566777778888888 98877766555442
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
+.. ..--...-|.-++++.....+.+|.-
T Consensus 959 ppe----pahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 959 PPE----PAHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCc----chhhhhccCceeEEeccCcEEEEEec
Confidence 211 00011123556777777677777753
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-07 Score=114.41 Aligned_cols=255 Identities=11% Similarity=0.093 Sum_probs=159.0
Q ss_pred eEEEEecCCC-EEEEEe-CCeEEEEEcCCceeeEEecC--C------------CCCeEEEEEcCCCCCEEEEEe-CCCcE
Q 001363 806 PCFALSKNDA-YLFSAS-GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI 868 (1092)
Q Consensus 806 ~~~~~s~dg~-~l~~~s-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~lasg~-~dg~v 868 (1092)
..+++++++. ++++-. .+.|+++|.. +..+..+.+ . -.....+++++ ++..|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 4678887644 444433 5889999986 444444332 1 12357899998 666555554 45789
Q ss_pred EEEEcCCceeeEeeccc-----------------cCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeee---ee
Q 001363 869 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 927 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~ 927 (1092)
+++|..++.. .++.+- -.....++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887653 333210 12346799999 56677777888999999998765322100 00
Q ss_pred cCCCCc---CCCCCceEEEEccCCCEEEE--EeCCcEEEEEcCCceeeeee------------ccC--------CCCCEE
Q 001363 928 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQW------------FPI--------SSVPIS 982 (1092)
Q Consensus 928 ~~~~~~---~~~~~v~~l~~s~dg~~la~--~~d~~i~lwd~~~~~~~~~~------------~~~--------h~~~v~ 982 (1092)
...+.. ........++|+|+|+.|.+ ..++.|++||+.++...... +.. .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000100 00124678999999986655 46689999999876532110 000 011346
Q ss_pred EEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccc-cCCCC--ccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001363 983 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 983 ~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
+++|++||..+++-+.+++|++||..++........... ...+. ...--.|..++++| +++.+++-+.++.|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 889999999888888899999999998876543321100 00000 00011456788988 578888888999999999
Q ss_pred cCCCC
Q 001363 1060 PNEPG 1064 (1092)
Q Consensus 1060 ~~~~~ 1064 (1092)
+....
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 96543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-07 Score=92.76 Aligned_cols=198 Identities=15% Similarity=0.121 Sum_probs=135.1
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcC-CceeeE
Q 001363 805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS 880 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~ 880 (1092)
..++.|++.+..+++.. +|.+.+-+...... ++..++|.-++..+.|+..+.+++.+|+.|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45778888888877775 58888666554443 347889999999999998788899999999999999998 344444
Q ss_pred e-eccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC--CEEEEEeC
Q 001363 881 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHE 956 (1092)
Q Consensus 881 ~-l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg--~~la~~~d 956 (1092)
. .+-|...|.++.-|| ++.+++||+.|..|++||...-. +++. .....+.|..+..+|.- ++|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl~----~~~v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPLF----KAKVGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----Cccc----cCccccceEEEEecchhhhHHHHHHHh
Confidence 4 456899999998886 57899999999999999998521 1111 11112579999999864 34444444
Q ss_pred CcEEEEEcCCcee----eeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEE-EEEcCCC
Q 001363 957 THLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNL 1010 (1092)
Q Consensus 957 ~~i~lwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~-vwd~~~~ 1010 (1092)
+..+|-+...+.. .......|.+-...-.|..-..+|+||+ .|+.++ +|-..++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 4455555543321 2222344555555555543345788866 577655 7765554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-08 Score=109.67 Aligned_cols=506 Identities=12% Similarity=0.108 Sum_probs=261.0
Q ss_pred ceEEeecCCCceEEEEEcC----CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 337 PMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
-+-..|+|... ++|+++. .|+|.||- ++|++-+..+++ -.+++++|+|..-.||
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--------------------~hatSLCWHpe~~vLa 75 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--------------------VHATSLCWHPEEFVLA 75 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccccc--------------------eehhhhccChHHHHHh
Confidence 34567889887 7787764 47888885 667655432221 2355699999999999
Q ss_pred EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE--EecC--CcCe
Q 001363 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPV 488 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~--~~~~--~~~v 488 (1092)
+|..-|.+.+|...+.+.-. ....|+.+|.-+.||++|. .++|+..-|.|.+|....-..++. +-.| ...+
T Consensus 76 ~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL 150 (1416)
T ss_pred hccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence 99999999999988754222 3446999999999999999 899999999999998763222221 1122 2334
Q ss_pred EEEeecccCCcc------EEEEEecCCeEE-EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001363 489 YSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 489 ~~i~~~~~~~~~------~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
+-++|.-+.++. ..+..+.+..+- .+++......... .-.-.|+|..++.++. +|+|+-.|
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~--------~ksgv~~g~~F~~~~~----~GtVyyvd 218 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD--------EKSGVPKGTEFLFAGK----SGTVYYVD 218 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc--------cccCCCCCcEEEEEcC----CceEEEEc
Confidence 445554333321 122233333222 3333211110000 0112367777777765 55677766
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CC---------------ce-------------
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KV---------------QL------------- 612 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~-~~---------------~~------------- 612 (1092)
- .|.......... . ..+-|.+...-+++.-.+-.+.++-.. +| ..
T Consensus 219 q-~g~~~~V~k~dS----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvL 292 (1416)
T KOG3617|consen 219 Q-NGRQRTVHKLDS----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVL 292 (1416)
T ss_pred C-CCcEEEEEEccc----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccc
Confidence 3 343333332211 1 111222222222222222222222110 00 00
Q ss_pred --EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce----------eeecccccCceeeeeecCCCcccc
Q 001363 613 --LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS----------VDAAGVLSDNLRKLSVNPISTVTG 680 (1092)
Q Consensus 613 --~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1092)
...+... ....+.+++++..+..++.|...|.+.+|.-..... +...+...+.|..+.|+|..+.++
T Consensus 293 r~~eKyg~e-~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a 371 (1416)
T KOG3617|consen 293 RKSEKYGLE-LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAA 371 (1416)
T ss_pred cCCcchhhh-cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhh
Confidence 0000011 123588999999999999999999999996543311 122223344555666665444443
Q ss_pred ccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001363 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 760 (1092)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~ 760 (1092)
+.+....+.+.... .+ ..|.....++.-+.++-.|..+.
T Consensus 372 vn~~~~v~ll~E~~-----l~-----------------------------~~h~~~~~A~q~ss~S~~L~hc~------- 410 (1416)
T KOG3617|consen 372 VNTEEDVVLLGENS-----LT-----------------------------VKHRGKMAAIQTSSNSFTLLHCT------- 410 (1416)
T ss_pred hhhhhheeeeccCc-----hH-----------------------------HHHhhhhHHhhhcCCceEEEeec-------
Confidence 33222211110000 00 00111111111111111111110
Q ss_pred EeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE--
Q 001363 761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-- 838 (1092)
Q Consensus 761 w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~-- 838 (1092)
+|... . + ...-++..++.+. ..++...+.+|..|++.+......
T Consensus 411 --------------------------sGv~~-~--l---~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~la~~~ 456 (1416)
T KOG3617|consen 411 --------------------------SGVSQ-D--L---KLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGSLATIQ 456 (1416)
T ss_pred --------------------------cchhh-h--h---hhccchhhheecc--ceEEEEcCceEEEEEecccchhHHHh
Confidence 11000 0 0 0122333444433 456666678889999864321111
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee--ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001363 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~ 916 (1092)
........+++++.. .++...++.+ |.++.+. |.+.+.+ ..-.+.|.-+.+ .|.+++.....+.++-+|+.
T Consensus 457 ~~tF~cet~~la~~n--qN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi--~g~~l~v~t~~~~~k~~dvs 529 (1416)
T KOG3617|consen 457 CTTFSCETTSLAIVN--QNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDI--MGELLIVQTVSTVAKRLDVS 529 (1416)
T ss_pred hhhhccccchHhHhh--cceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhh--ccceeEEeehHHHHHHhhhh
Confidence 111223344555553 4455555544 5555544 3333222 223444544555 37889988888888888888
Q ss_pred CCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE---EeC----CcEEEEEcCCceee
Q 001363 917 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL 970 (1092)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~---~~d----~~i~lwd~~~~~~~ 970 (1092)
..+...........+.....+.+..+..+..|..+.+ ..+ .++..||.++++..
T Consensus 530 r~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 530 RAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred hhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence 7665544444444444444456778888777766544 222 47999999877643
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=0.0003 Score=81.24 Aligned_cols=619 Identities=11% Similarity=0.068 Sum_probs=300.5
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-C---
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-D--- 407 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-d--- 407 (1092)
|..+-..|+.+-++| ++.+||.-|.=.+-.+.+......+. ..++. + ..-++|..++.-. |
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~----------~ilet--~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV----------VILET--F-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh----------hhhhh--c-ccccceeeEEEEeccccC
Confidence 445456677777888 57888887766666665433221100 00000 0 1224677666543 2
Q ss_pred CCEEEEEe---CCCEEEEEEccCCCcccceEEEcccccceeEEE--EecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 408 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 408 g~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+..+++++ .||++++..-.-+-.......+.| -..++.+. +.+.-...++++-. + .-++..+...-......
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~-eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-S-ETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-c-ceEEEEEccceEEeccc
Confidence 34566553 578899887654422222224555 33466666 44332221333322 2 23344432221111122
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+.......+..+.- +++.|+-.. ...||+++-. .....+..+. .++....+.+...++.++. ...+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22223333332221 112222221 1235555433 2222333333 3333344444445555543 333555565
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCC------CEEEEEeCCCcEEEE-ECCCCceEEEEeCCC--CCCCCceEEEccC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGG--GLPENPRICFNKN 633 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~~~--~~~~v~~v~~s~~ 633 (1092)
..+.+....+. .-...|.|+.++|-+ ++++.|..+..+.+. -..+...+....... -...|...+|-.|
T Consensus 517 ~~~~l~e~~~~--~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 517 EDGGLREVSHK--EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred eccceeeeeeh--eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 55542222221 124679999998752 266777765554443 333444433332221 1122444555567
Q ss_pred CCEEEEEeCCCeEEEEECC--CCceeeecc--cccCceeeeee----------cCCCccccccccCCceeecCCC-----
Q 001363 634 GTLLAVIANENRIKILETP--ESNSVDAAG--VLSDNLRKLSV----------NPISTVTGAGIANGSVSVNEDP----- 694 (1092)
Q Consensus 634 ~~~l~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~----------~~~~~~~~~~~~~~~~~~~~~~----- 694 (1092)
..+|.++..||.+..+.+. ++..-...+ -...++.--.| ..+.+.+. =..++...|.+-.
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~vi-Y~~n~kLv~spls~kev~ 673 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVI-YSSNGKLVYSPLSLKEVN 673 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEE-EecCCcEEEeccchHHhh
Confidence 8899999999998876554 332111110 01111111111 11111111 1111111111000
Q ss_pred ------CCC-CccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCC
Q 001363 695 ------KED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1092)
Q Consensus 695 ------s~d-~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~ 767 (1092)
++. +..++++. .+.+++..++.-.....+.+ | -......+++.+....+.+.+.......=
T Consensus 674 ~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtv--p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~------ 741 (1096)
T KOG1897|consen 674 HMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTV--P---LGESPRRICYQESSLTFGVLSNRIESSAE------ 741 (1096)
T ss_pred hhcccccccCCceEEEec-CCceEEEEecchhhcceeee--c---CCCChhheEecccceEEEEEecccccchh------
Confidence 111 12222222 24455554442222222221 1 12334455666544333333322111100
Q ss_pred cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEe-----------CCeEEEEEcCCcee
Q 001363 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKT 835 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d-g~~l~~~s-----------dg~i~iwd~~~~~~ 835 (1092)
..+.......++++|..+-..+...++...+....+.++.|..| +.++++|. .|.|.++....++.
T Consensus 742 --~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 742 --YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred --hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 00111122345666666655455444433233344555568877 77888773 26788998877444
Q ss_pred eEEecCC--CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 836 ILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913 (1092)
Q Consensus 836 ~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iw 913 (1092)
++....+ .+.+.++..- +|++|| +-...|++|+..+.+.+..-..|..++..+...-.|..++.|.--+.+.+-
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 4444322 2344444332 577776 345689999999987777777899999999999999999999988888777
Q ss_pred EcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCc-------------------eeeeeec
Q 001363 914 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL-------------------TCLKQWF 974 (1092)
Q Consensus 914 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~-------------------~~~~~~~ 974 (1092)
.....+.......+...+ .+++++.+-.+..++.+-.+|.+++-..++. +.+..+
T Consensus 896 ~y~~~eg~f~evArD~~p-----~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f- 969 (1096)
T KOG1897|consen 896 QYKGDEGNFEEVARDYNP-----NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKF- 969 (1096)
T ss_pred EEeccCCceEEeehhhCc-----cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeee-
Confidence 666544222112222211 3788999999988888877777666644321 111111
Q ss_pred cCCCCCEEE--EEEecCCCEEEEEECCCcEEEE
Q 001363 975 PISSVPISQ--ATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 975 ~~h~~~v~~--l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
.|..-|.. -..+|-+..+..|+.+|+|-+-
T Consensus 970 -~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 970 -RHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred -eecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 13333333 1223444457778889988764
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-09 Score=125.20 Aligned_cols=202 Identities=15% Similarity=0.253 Sum_probs=161.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|-..|.++.=+|...+.++|+.||.|++|.+..+..+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3346678889999999999999999999999999998877655443 33 8899999999999 688888899999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEE
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
+. .+.....+.|........|.. ..+++++ .++.+.+||...... -.....|.+.++++++.|..+.+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 666777788988888887754 3456553 467899998654332 22337788899999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
+. +|.|++||++..++++.++. +. ...++++|+..|.++||++.....+.++...
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 87 55599999998877666543 33 4578999999999999999988887777543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-07 Score=89.95 Aligned_cols=208 Identities=18% Similarity=0.139 Sum_probs=139.3
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCc--eeeEE---ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001363 808 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 808 ~~~s~dg~~l~~~sdg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
++.++||++||+.-|..|.|-..++. ..+.+ .+.....=+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67889999999999998888776542 12222 222334558899999 999999999999999999986443 333
Q ss_pred cc-------ccCCeEEEEEcCCC------CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 883 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 883 ~~-------h~~~V~~l~~spdg------~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
.. -...|..|.|.+-. ..|.....+|.++=|-+..+..+.......+.-.......|.++.+.|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22 23567777776432 246666788888877764332111111111111111123799999999999
Q ss_pred EEEEEe-----C-------CcEEEEEcCCceeeee--------------------ec--------cCCCCCEEEEEEecC
Q 001363 950 RFLLVH-----E-------THLAIYEAEELTCLKQ--------------------WF--------PISSVPISQATFSCD 989 (1092)
Q Consensus 950 ~la~~~-----d-------~~i~lwd~~~~~~~~~--------------------~~--------~~h~~~v~~l~fs~d 989 (1092)
+|+++. + --+.-|.+-++.+-.. +. ......|..|..|||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 988841 1 1366676543321100 00 113678899999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCceEEeec
Q 001363 990 CRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 990 g~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
|+.||+...+|.|.+|++.+.++...+.
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999988776
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6e-09 Score=109.56 Aligned_cols=295 Identities=9% Similarity=0.105 Sum_probs=186.5
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC-CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
-.+..+.||+..|..++--.+.+ -+++++.|++|++|.+... ..+.+ ..|..+ +..|+.+|..+.
T Consensus 726 irL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~t--------saCQfT-----Y~aHkk~i~~ig 791 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGT--------SACQFT-----YQAHKKPIHDIG 791 (1034)
T ss_pred eeeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCcccc--------ceeeeE-----hhhccCccccee
Confidence 34567789999999998777766 4789999999999998752 22221 122222 567999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC-CCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
|-.|-++++++ ||-|++||.--|+.+.+...-..| +.+..+..-++ .+.++++.|+...+|+++|.+.++....++
T Consensus 792 fL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 792 FLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred eeeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 99999999876 677999999887766543222222 22333333333 344355556889999999999988776664
Q ss_pred c-----CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 483 G-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 483 ~-----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
. ...-+.+++..+ .|..++.+-.+|.|.+.|.+++..+..+.........++ .|..+.++.... +..+
T Consensus 869 Vcna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHsl 941 (1034)
T KOG4190|consen 869 VCNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSL 941 (1034)
T ss_pred eccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----ccee
Confidence 3 345577887754 557899999999999999998877665554443333332 244455554433 4456
Q ss_pred EE-EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceEEEEeCCCCCCCCceEEEcc
Q 001363 558 VE-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 558 ~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
.+ |....|.......... .+.. ....-|..++++.....+.+|--.. ...+..+....-....++++.-|
T Consensus 942 aVnWhaldgimh~q~kppp---epah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LP 1016 (1034)
T KOG4190|consen 942 AVNWHALDGIMHLQDKPPP---EPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLP 1016 (1034)
T ss_pred EeeehhcCCeeeeccCCCC---cchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecc
Confidence 66 8766665544433222 1111 1112355677777666777774221 12222332222223356677777
Q ss_pred CCCEEEEEeCCCeEEE
Q 001363 633 NGTLLAVIANENRIKI 648 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~i 648 (1092)
-..-+..|...|.|.+
T Consensus 1017 LN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1017 LNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ccchhhccCCCCceee
Confidence 6666677777787765
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.5e-09 Score=123.24 Aligned_cols=224 Identities=13% Similarity=0.182 Sum_probs=166.3
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCc
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA 486 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~ 486 (1092)
++.......++...-|..+.+.. .++.+-..|.++.=+|... +.+||+.||.|++|....++.+..++. ...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 34444444455555565554321 2334556788888888877 799999999999999999998887743 336
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1092)
.|+.+.|+. .|..+..+..||.+.+|... .+.......|......+.|-. ..+++++.+.+ ++.+.+||..-.
T Consensus 2253 ~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFNH--QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhcc--cCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 788888854 66788899999999999877 455556667777777777765 66777766555 677999996532
Q ss_pred --eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001363 566 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 566 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
.++. ..|. +.++++++.|..+.+++|+.+|.|++||++..++.++++. +. ...++++++..
T Consensus 2327 ~~s~v~--~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2327 MNSLVH--TCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSE 2389 (2439)
T ss_pred ccceee--eecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcc
Confidence 2222 4555 8999999999999999999999999999998887766643 33 46789999999
Q ss_pred CeEEEEECCCCceeeecc
Q 001363 644 NRIKILETPESNSVDAAG 661 (1092)
Q Consensus 644 g~i~iw~~~~~~~~~~~~ 661 (1092)
|.++||++..-..+..+.
T Consensus 2390 g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cceEEEEccccchhhcCc
Confidence 999999999776655544
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-06 Score=95.88 Aligned_cols=220 Identities=10% Similarity=0.058 Sum_probs=127.5
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeEEecCCCCC-----eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC-
Q 001363 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK- 887 (1092)
Q Consensus 814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~- 887 (1092)
+..++...++.+..+|..+|+.+......... ..+.+.. ++ .++.++.+|.+..+|..+|+.+........
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 33333334677777788777777665432111 0111222 23 566678899999999999987665431100
Q ss_pred ------CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcE
Q 001363 888 ------RVTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 959 (1092)
Q Consensus 888 ------~V~~l~~sp--dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i 959 (1092)
....+.-+| .+..+..++.+|.+..+|..+++..-... .+. ...+.. .++...+...++.+
T Consensus 238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~~------~~~~~~-~~~~vy~~~~~g~l 306 (394)
T PRK11138 238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YGS------VNDFAV-DGGRIYLVDQNDRV 306 (394)
T ss_pred CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CCC------ccCcEE-ECCEEEEEcCCCeE
Confidence 011111122 24566677789999999999886432111 111 111221 23444445778999
Q ss_pred EEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEEC
Q 001363 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1039 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1039 (1092)
..+|..+|+.+-...........+... .+.+|+.++.||.+...|..+|+.+.+..... ..+.+.-+ ..
T Consensus 307 ~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--------~~~~s~P~-~~ 375 (394)
T PRK11138 307 YALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--------SGFLSEPV-VA 375 (394)
T ss_pred EEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CcceeCCE-EE
Confidence 999999987754321111111222222 24567788999999999999999988775311 11111001 11
Q ss_pred CCCCCEEEEEeCCCcEEEEecC
Q 001363 1040 PLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1040 p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+..|++++.||.|+.++++
T Consensus 376 ---~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 376 ---DDKLLIQARDGTVYAITRP 394 (394)
T ss_pred ---CCEEEEEeCCceEEEEeCC
Confidence 3589999999999998763
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.9e-06 Score=86.07 Aligned_cols=232 Identities=15% Similarity=0.133 Sum_probs=153.9
Q ss_pred eEEEEec-CCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCe--EEEEEcCCCCCEEEEEeC-----CCcEEEEEcC-
Q 001363 806 PCFALSK-NDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMD-----DSTILIYNAR- 874 (1092)
Q Consensus 806 ~~~~~s~-dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~-----dg~v~iwd~~- 874 (1092)
-.++.+| ++..++.+. .....+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 3678888 555666665 3458899999999988877655432 3578999 8999988644 4799999999
Q ss_pred CceeeEeeccccCCeEEEEEcCCCCEEEEEeC------------------CCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001363 875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGG------------------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 875 ~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
+.+.+..+..|.-.-..+.+.|||+.|+.+-. +-.+..-|..+|+......+......
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~---- 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ---- 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc----
Confidence 66888889888777788999999988887521 22355556666664442222111111
Q ss_pred CCceEEEEccCCCEEEEE-eCC-------cEEEEEcCCceeeeeecc------CCCCCEEEEEEecCCCEEEEEE-CCCc
Q 001363 937 PSETHIQFHKDQTRFLLV-HET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDGT 1001 (1092)
Q Consensus 937 ~~v~~l~~s~dg~~la~~-~d~-------~i~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~-~Dg~ 1001 (1092)
.++..+++.++|..++.. ..+ -|.+++-. +.+..+.. .-...+-+|+++++|.++++++ .-++
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 269999999999987763 111 14444433 22221111 1267899999999998876554 6789
Q ss_pred EEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001363 1002 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1002 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
+.+||..+|+++....... .+.++..+ +. |+..+..|.+....
T Consensus 241 ~~~~d~~tg~~~~~~~l~D------------~cGva~~~--~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPLPD------------ACGVAPTD--DG-FLVSSGQGQLIRLS 283 (305)
T ss_pred EEEEECCCCCEeeccccCc------------eeeeeecC--Cc-eEEeCCCccEEEcc
Confidence 9999999999986655211 23455554 23 56665666644333
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.00057 Score=79.02 Aligned_cols=581 Identities=11% Similarity=0.108 Sum_probs=290.3
Q ss_pred EECCCCCEEEEEeCCCEEEEEEcc-CCCcccc---eEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
...++|...+.+..+|.+...-+. +++.... ....-+...-..|+.+.++| .+..|+.-|.=++-.+.+..-.
T Consensus 264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence 355678888888888887666555 4443322 11233555667788888887 4788887665555554432221
Q ss_pred -------EEEecCCcCeEEEeecccC--CccEEEEEe---cCCeEEEEEcCCCCceE---EecCCCCceEEEE-------
Q 001363 479 -------YSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGARV---DYDAPGLGCTRMA------- 536 (1092)
Q Consensus 479 -------~~~~~~~~~v~~i~~~~~~--~~~~l~s~~---~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~------- 536 (1092)
.++. .-+||..++..... .+..+++++ .||.+|+..-.-+-... .+.+ -..+..+.
T Consensus 341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~ 418 (1096)
T KOG1897|consen 341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY 418 (1096)
T ss_pred Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence 2232 34578777765433 334455554 57888887432111111 1111 01112221
Q ss_pred ----------------------------EccCCCEEEEEecCCCC-----ceeEEEEeCCCCeEEEEEeeccccCCceEE
Q 001363 537 ----------------------------YSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV 583 (1092)
Q Consensus 537 ----------------------------~s~dg~~l~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 583 (1092)
|+.+.+.+++....++. ...|++++-. ........ .+.++.
T Consensus 419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~----p~~~ti 492 (1096)
T KOG1897|consen 419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRP----PGKITI 492 (1096)
T ss_pred CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccC----CCceEE
Confidence 11122222222211110 0112333221 01111111 123344
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC--C----CEEEEEeCCCeEEEEE-CCCCce
Q 001363 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILE-TPESNS 656 (1092)
Q Consensus 584 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iw~-~~~~~~ 656 (1092)
...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.- .++...
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 4444455677777777777777777665 332222223346888888873 2 3788887766555443 333322
Q ss_pred eeecccccCce-eeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc--CccccccccCCccc
Q 001363 657 VDAAGVLSDNL-RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR--PSECQSLLLPSKVK 733 (1092)
Q Consensus 657 ~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~--~~~~~~~~~~~~~~ 733 (1092)
+.........+ .++-+. .+ ..|..++.++..||.+.-|-++... ........ -.
T Consensus 572 ~~~~~l~~~~iPRSIl~~---------------~~----e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~----lG 628 (1096)
T KOG1897|consen 572 ITHEQLSGEIIPRSILLT---------------TF----EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT----LG 628 (1096)
T ss_pred eeeeccCCCccchheeeE---------------Ee----eccceEEEEEcCCceEEEEEEEcccceEccccccc----cC
Confidence 22211111110 001110 11 2357888889999987766554322 11111111 13
Q ss_pred cccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-
Q 001363 734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK- 812 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~- 812 (1092)
..++.--.|+..++.-+.+.+|.-..+|..... .+.....++...| + ..|+.
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k----------------------Lv~spls~kev~~---~--c~f~s~ 681 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK----------------------LVYSPLSLKEVNH---M--CPFNSD 681 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc----------------------EEEeccchHHhhh---h--cccccc
Confidence 344555566666555555555544444432111 0011111111001 1 11222
Q ss_pred -CCCEEEEEeCCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCC--------------CcEEEEEcCC
Q 001363 813 -NDAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------------STILIYNARS 875 (1092)
Q Consensus 813 -dg~~l~~~sdg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------------g~v~iwd~~~ 875 (1092)
-...++++..+.+++.-+..-+. +++.. -......+++.+ ....+++.+.- ..++++|-++
T Consensus 682 a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT 759 (1096)
T KOG1897|consen 682 AYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT 759 (1096)
T ss_pred cCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCc
Confidence 23467777777777776654332 23322 223455666665 34444443321 1466777666
Q ss_pred ceeeEeecc-cc---CCeEEEEEcCC-CCEEEEEeC----------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001363 876 SEVISKLEG-HS---KRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 876 ~~~~~~l~~-h~---~~V~~l~~spd-g~~l~s~s~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
-+.+...+- .. -.|.++.|..| +.+++.|.. .|.|.|+.+..+... +.+....-. +.+
T Consensus 760 f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L--~~v~e~~v~----Gav- 832 (1096)
T KOG1897|consen 760 FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL--ELVAETVVK----GAV- 832 (1096)
T ss_pred eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce--eeeeeeeec----cce-
Confidence 554433221 11 23445568877 677777642 466778877762211 111111000 112
Q ss_pred EEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 941 ~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
.+.---+..++++-+..|++|++.+.+.++. ...|..++..+...-.|..+++|..-+++.+-.....+-........
T Consensus 833 -~aL~~fngkllA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD 910 (1096)
T KOG1897|consen 833 -YALVEFNGKLLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD 910 (1096)
T ss_pred -eehhhhCCeEEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh
Confidence 2222333445556677899999998876665 55688899999999999999999887877766555444211111122
Q ss_pred ccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001363 1021 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1021 ~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
+.|. +..++.+- |.+.++-+..+|.+.+-.......
T Consensus 911 ~~p~-------Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~ 946 (1096)
T KOG1897|consen 911 YNPN-------WMTAVEIL--DDDTYLGAENSGNLFTVRKDSDAT 946 (1096)
T ss_pred hCcc-------ceeeEEEe--cCceEEeecccccEEEEEecCCCC
Confidence 2222 22333333 356788888889888877764443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=109.61 Aligned_cols=211 Identities=17% Similarity=0.277 Sum_probs=146.7
Q ss_pred EeeecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 389 TALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 389 ~~~l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
..++.||+..|+.+.|.|. -..||+++.|..+..||+.+.. ..+..+..-...-..++|+.... .+...+..+.|
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i 182 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDI 182 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeecccccCceeeecccCc--chhhhccCCce
Confidence 3458899999999999995 5688999999999999998764 22223334444567789987666 35556667789
Q ss_pred EEEECCCC-ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEE
Q 001363 468 KVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 468 ~vwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~ 545 (1092)
++||...| .++..+++|...|+.+.|..... ..+.+.+.||+|++||.+........ .....++..-++.|-|.-.+
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 99999876 56788999999999998864433 36889999999999999865544322 22334666666777555433
Q ss_pred EEecCCCCceeEEE---------EeCCC-CeEEEEEeeccccCCceEEEEEcCC----------CCEEEEEeCCCcEEEE
Q 001363 546 SCGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIW 605 (1092)
Q Consensus 546 ~~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~s~dg~i~iw 605 (1092)
.--.. |.+.+.+ |+..+ .+.+..|.||. +.|....|-.. .-+|++-+.|.++++|
T Consensus 262 ~mp~~--G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 262 IMPMV--GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred ecccc--CCeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 32221 1223333 33332 35688899988 66655444322 2368999999999999
Q ss_pred ECCC
Q 001363 606 DMNK 609 (1092)
Q Consensus 606 d~~~ 609 (1092)
-+.+
T Consensus 337 pI~~ 340 (1081)
T KOG0309|consen 337 PIDS 340 (1081)
T ss_pred eccH
Confidence 8754
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-08 Score=101.14 Aligned_cols=165 Identities=21% Similarity=0.172 Sum_probs=115.1
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~- 414 (1092)
.++.+..+|.++ ++|++..+....++++...... .+.++. ... ...-+++.|-.+.....++
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~---------~~v---~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDV---------SCV---PKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeE---------eec---ccCcceeeeeeccceEEEEe
Confidence 556667788887 7888888777777776554331 111110 001 1223344454555555544
Q ss_pred --eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcCeEEE
Q 001363 415 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1092)
Q Consensus 415 --~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i 491 (1092)
+....+.+|....+.+. .+-||-..+..++|+||++ +++++..|..|+|-....-..+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44556667776654433 3558999999999999999 8999999999999887766666555 5799999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 526 (1092)
+.. ++..|++++.|+++++||+.+++....+.
T Consensus 201 sl~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLT---DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eec---cCceeeecCCCCcEEEEecccCCcccccc
Confidence 974 33579999999999999999988775443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-06 Score=97.71 Aligned_cols=212 Identities=9% Similarity=0.005 Sum_probs=131.1
Q ss_pred eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-EEEEEeCC---CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCC
Q 001363 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 899 (1092)
.|.+-|..... .+.+... +......|+| |++ .++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 45555554333 3333333 3678899999 776 36654443 479999998887544333 455566788999998
Q ss_pred EEEEE-eCC--CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCC----cEEEEEcCCceeeee
Q 001363 900 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 972 (1092)
Q Consensus 900 ~l~s~-s~D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~----~i~lwd~~~~~~~~~ 972 (1092)
.|+.. +.+ ..|.++|+.+++.. .+....+ ......|+|||+.|+...+. .|+++|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 77643 333 46888888776522 2322222 12345799999998875432 689999988877554
Q ss_pred eccCCCCCEEEEEEecCCCEEEEEECC---------CcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCC
Q 001363 973 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1043 (1092)
Q Consensus 973 ~~~~h~~~v~~l~fs~dg~~l~t~~~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1043 (1092)
...+. ....|||||++|+..+.. ..|.+.|+.++... .+... . . ....+|+| |+
T Consensus 317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG 379 (419)
T PRK04043 317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG 379 (419)
T ss_pred ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence 33222 124899999999877654 26788898888653 22211 0 0 11357999 57
Q ss_pred CEEEEEeCC-CcEEEEecCCCCC
Q 001363 1044 TQFAVGLTN-GEVYVIEPNEPGD 1065 (1092)
Q Consensus 1044 ~~l~~~~~d-g~v~~w~~~~~~~ 1065 (1092)
..++..+.+ +.-.+|-+.-.+.
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCCC
Confidence 777666654 3444555544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.8e-07 Score=99.42 Aligned_cols=339 Identities=14% Similarity=0.110 Sum_probs=188.0
Q ss_pred EEEEEECCCCCEEEEEe----CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 399 VNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 399 V~~l~~spdg~~las~~----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
-+-..|+|...++|+++ ..|.|.||- ++|+.-+.. +. .-.+++++|+|..- .|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~---P~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TY---PVHATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-cc---ceehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 34467999999999885 357788874 444433211 22 22366799999866 788888899999999877
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CC--Cc--eEEEEEccCCCEEE---
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PG--LG--CTRMAYSANGRRLF--- 545 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~--~~--i~~~~~s~dg~~l~--- 545 (1092)
.+.-.....|..+|..+.|++ +|..++++..-|.+.+|.++.......... |. .. ..+...++++.-++
T Consensus 91 ~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 776666678999999999954 778999999999999998875444332221 11 12 23444566643221
Q ss_pred EEecCCCCce--eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001363 546 SCGTSKEGES--FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 546 ~~~~~~~~~~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
-+.-.++... ...-|..++.. +... -.-.|+|..++.++.+|+|+--|- .|+..........
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a~--rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLAE--RSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhccCchhhhcccccCccchhh--cccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence 1111111111 12222211111 0100 012468888999999999988774 4555555544322
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECC-CCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccce
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1092)
..+-|.+...-+++...+-++.++-.. +|.. ..+..+.++ +........++
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~--------ee~~~vk~s------------------gk~GgrqGgiA 284 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTS--------EERCAVKVS------------------GKLGGRQGGIA 284 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEEEecCCCch--------HHhhhhhhc------------------cccCCccCccc
Confidence 335555555555555554444444332 2211 111111111 00000000123
Q ss_pred eeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCcc
Q 001363 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782 (1092)
Q Consensus 703 s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 782 (1092)
.+...|.++- ..... ......+.+++++..+..+.++...|.+.+|.-....+ ....++.+
T Consensus 285 ~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f------~g~p~~d~ 345 (1416)
T KOG3617|consen 285 CSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF------QGDPTIDV 345 (1416)
T ss_pred cccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc------cCCCCcce
Confidence 3322231111 00111 11456789999999999999999999999997433222 11123445
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEE
Q 001363 783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 819 (1092)
Q Consensus 783 ~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~ 819 (1092)
|.+.+.. ...+.|+.+.|.|--..+++
T Consensus 346 w~l~~~~----------e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 346 WTLNGKR----------ESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred EEecCch----------hhccceEEEEeccccchhhh
Confidence 5544332 24567778888775444443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-05 Score=83.08 Aligned_cols=234 Identities=16% Similarity=0.156 Sum_probs=153.0
Q ss_pred ceEEeecCCCceEEEEEcCCCc-EEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001363 337 PMSMDFHPVQHTLLLVGTNVGD-TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~dg~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~- 414 (1092)
...++.+|+....++.+-.-|+ ..+||..+|+......- -....+.|| -+||+||++|++.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-----------~~gRHFyGH------g~fs~dG~~LytTE 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-----------PPGRHFYGH------GVFSPDGRLLYTTE 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----------CCCCEEecC------EEEcCCCCEEEEec
Confidence 3458899966667888877655 78999999988764211 011124455 5899999999987
Q ss_pred ----eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe----------------CCCcEEEEECCC
Q 001363 415 ----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------------DDKTIKVWDAVT 474 (1092)
Q Consensus 415 ----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~----------------~d~~i~vwd~~~ 474 (1092)
...|.|-|||...+ ++...++..|.-.-..+.+.|||+.|.++-|+ .+.++..-|..+
T Consensus 70 nd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred cccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 34578999999832 45555777776667788999999854444443 234566778888
Q ss_pred CceeEE--E--ecCCcCeEEEeecccCCccEEEEEecCCe-------EEEEEcCCCCceEEec-------CCCCceEEEE
Q 001363 475 GSRTYS--F--EGHGAPVYSLCPHAKENIHFIFSISVDGK-------IKAWLYDSLGARVDYD-------APGLGCTRMA 536 (1092)
Q Consensus 475 ~~~~~~--~--~~~~~~v~~i~~~~~~~~~~l~s~~~dg~-------i~vwd~~~~~~~~~~~-------~~~~~i~~~~ 536 (1092)
|+.+.. + ..|...|..+++.. +|..++..-..|. +-+++ ..+....+. .-.+-+-+++
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred CceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEE
Confidence 988766 4 33777888888844 4444443322222 23332 222222222 2234688999
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1092)
+++++..+++.+. ..+.+.+||..+++.+....-. .+..++..+++ ++..+..|.+.
T Consensus 224 ~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~--f~~ssG~G~~~ 280 (305)
T PF07433_consen 224 ADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG--FLVSSGQGQLI 280 (305)
T ss_pred EeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc--eEEeCCCccEE
Confidence 9999998877764 2567999999999998777653 36667776666 44444445543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-05 Score=91.54 Aligned_cols=153 Identities=19% Similarity=0.115 Sum_probs=93.6
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCc--CeE-----EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~-----~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 529 (1092)
.++.++.++.+..+|.++|+.+.+...... ... .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 467777788999999999998876643220 000 0000011133567788899999999999998887766543
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC--CceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
....+..+ .++ .++.+.. ++.++.+|..+|+.+-.+....... ....+-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 22111122 234 4444432 5679999999999887765432000 00001111 1345777888999999999
Q ss_pred CCCceEEEEe
Q 001363 608 NKVQLLTTID 617 (1092)
Q Consensus 608 ~~~~~~~~~~ 617 (1092)
.+|+.+....
T Consensus 223 ~~G~~~W~~~ 232 (394)
T PRK11138 223 EQGQLIWQQR 232 (394)
T ss_pred cCChhhheec
Confidence 9988766543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.8e-08 Score=98.32 Aligned_cols=160 Identities=9% Similarity=0.083 Sum_probs=114.7
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEEcCCce----eeEeeccccCCeEEEEEcCCCCEEE---EEeCCCcEEEEEcCCCc
Q 001363 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILV---SSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~l~---s~s~Dg~I~iwd~~~~~ 919 (1092)
..+..++ ++++||++..+....+++..... ++..... ...-+++.|..+..... .++....+.+|+...+.
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445666 88899988888887777765433 2222221 12233444444443333 34555666777766422
Q ss_pred eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEEC
Q 001363 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
....-||.. .+..+++|||+++|+++ .|..|++-.+...-.+..+.-||..-|..++.-+ +..|+++|.
T Consensus 144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sG 213 (390)
T KOG3914|consen 144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSG 213 (390)
T ss_pred ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCC
Confidence 233445655 79999999999999996 7889999999888888888899999999999865 456999999
Q ss_pred CCcEEEEEcCCCceEEeecc
Q 001363 999 DGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 999 Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
|+++++||+.+|+.+..+..
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCcEEEEecccCCcccccch
Confidence 99999999999999877653
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-06 Score=84.93 Aligned_cols=148 Identities=11% Similarity=-0.036 Sum_probs=108.2
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
+.++++|+|++++++.+....|..|.+...............+..=.+..|+.... .++++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999976544332223444455566889998887 7999999999999999865443
Q ss_pred EE-----EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--------CceEEEEEccCCCEEE
Q 001363 479 YS-----FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--------LGCTRMAYSANGRRLF 545 (1092)
Q Consensus 479 ~~-----~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--------~~i~~~~~s~dg~~l~ 545 (1092)
.. -..|.+.+..+.|++.+--.+|+..-.-+.+.+.|+++......+.... ..+..-.|+.++.-+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 32 2358899999999876555677777777899999999877655433222 2355666666666555
Q ss_pred EEe
Q 001363 546 SCG 548 (1092)
Q Consensus 546 ~~~ 548 (1092)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 544
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-05 Score=80.15 Aligned_cols=249 Identities=10% Similarity=0.106 Sum_probs=134.2
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
|.++.++||+ +||.- .|..|.|=.....-.....++. +.+...-.=..++||||+.+||.+...
T Consensus 1 W~~~~~~~Gk-~lAi~-qd~~iEiRsa~Ddf~si~~kcq--------------VpkD~~PQWRkl~WSpD~tlLa~a~S~ 64 (282)
T PF15492_consen 1 WHLALSSDGK-LLAIL-QDQCIEIRSAKDDFSSIIGKCQ--------------VPKDPNPQWRKLAWSPDCTLLAYAEST 64 (282)
T ss_pred CceeecCCCc-EEEEE-eccEEEEEeccCCchheeEEEe--------------cCCCCCchheEEEECCCCcEEEEEcCC
Confidence 4578899998 66654 4566666655443211111111 122333445679999999999999999
Q ss_pred CEEEEEEccCCCcccc--eEEEc-ccccceeEEEEecCC-----CcEEEEEEeCCCcEEEEECC-----CCceeEEEec-
Q 001363 418 HIVQLYAYHGGSDARQ--QLEID-AHVGNVNDLAFSAPC-----KQISVITCGDDKTIKVWDAV-----TGSRTYSFEG- 483 (1092)
Q Consensus 418 ~~i~iwd~~~~~~~~~--~~~~~-~h~~~v~~~~~s~d~-----~~l~l~s~~~d~~i~vwd~~-----~~~~~~~~~~- 483 (1092)
|+|+++|+.+.+.... ...+. .-...|..+.|.+-. .. .|+.-..+|.++=|-+. ..+..++|..
T Consensus 65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~ 143 (282)
T PF15492_consen 65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS 143 (282)
T ss_pred CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence 9999999986443210 00011 123467777776532 11 34555567777766542 2234444432
Q ss_pred --CCcCeEEEeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE--EEecCCCC--cee
Q 001363 484 --HGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF--SCGTSKEG--ESF 556 (1092)
Q Consensus 484 --~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~--~~~~~~~~--~~~ 556 (1092)
+...|.++.+++.. ++|+.|+. ...-..+ ......+++-.+-.+..+.. ....+... ..+
T Consensus 144 ~~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~ 210 (282)
T PF15492_consen 144 SHYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKR 210 (282)
T ss_pred ccCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccccCccccccccc
Confidence 46789999997754 45555543 2210000 00111111111111111111 11100000 001
Q ss_pred EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
..+|.+-+... +.........|..|..+|||..|++...+|.|.+|++.+-++......+
T Consensus 211 ~~~~~~~~~~~---fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 211 RGLLRIPSFKF---FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cceeeccceee---eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 22333222211 1111222478999999999999999999999999999987776665443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=102.93 Aligned_cols=295 Identities=13% Similarity=0.158 Sum_probs=188.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-cccceEEEcccc--cceeEEEEecCCCcE-EEEEEeCCCcEEEE
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHV--GNVNDLAFSAPCKQI-SVITCGDDKTIKVW 470 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~--~~v~~~~~s~d~~~l-~l~s~~~d~~i~vw 470 (1092)
-.+++.++..+|.|+-+|.++.-| +.+-|+...- ..+ +-.|. -.|-...|+|..... .+|+.+ .....+|
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr----~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiw 96 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR----WLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIW 96 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce----eeeccCcchhcceecccCCCCceeEEecC-cchhhhh
Confidence 346788999999999999999888 6666776432 121 11232 246677888865433 455444 4556789
Q ss_pred ECCCC---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEE
Q 001363 471 DAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 471 d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
++... ..-..+.+|...|+.+.|++.. ...+++++.|-.+..||+++..... ....-......+.|+.....+.+
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla 175 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA 175 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh
Confidence 87643 3345668999999999998753 3689999999999999999876544 33333445567888874444443
Q ss_pred EecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCC
Q 001363 547 CGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1092)
.+. ...|.+||.+.| ..+..+++|. ..|+.+.|..- ...+.+.+.||+|+.||............... ..
T Consensus 176 ssh----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~p 247 (1081)
T KOG0309|consen 176 SSH----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN-FP 247 (1081)
T ss_pred hcc----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc-Cc
Confidence 332 334999999865 5566777766 77888887653 35678899999999999875433222211111 23
Q ss_pred CceEEEccCCCEEEE--EeCCCeEEE---------EECCC-CceeeecccccCceeeeeecCCCccccccccCCceeecC
Q 001363 625 NPRICFNKNGTLLAV--IANENRIKI---------LETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1092)
Q Consensus 625 v~~v~~s~~~~~l~~--~~~dg~i~i---------w~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1092)
+..-++-|-|.-.++ .-.+..+.+ |+..+ .+++..+.||.+.|....|-...... +
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~ 315 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------G 315 (1081)
T ss_pred ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------C
Confidence 555555553332222 111223333 33333 36788888998888766664332211 1
Q ss_pred CCCCCCccceeeccccccceeccc
Q 001363 693 DPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
+.....-.|++-+.|.++|+|.+.
T Consensus 316 d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CCCccceeEEEeecCCceEeeecc
Confidence 112223458899999999999875
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-07 Score=90.30 Aligned_cols=261 Identities=13% Similarity=0.197 Sum_probs=164.0
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCce-----eeEEecCCCC------------CeEEEEEcCC-CCCEEEE
Q 001363 801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPH-DNNVIAI 861 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~s~~-d~~~las 861 (1092)
....|+++.|...|.||++|. +|.|.+|.-+... ....+++|.. .|..+.|..+ +...+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 567789999999999999998 6889998765332 2234555543 3566666542 2335556
Q ss_pred EeCCCcEEEEEcCCcee-------------------------------------e----E-ee-ccccCCeEEEEEcCCC
Q 001363 862 GMDDSTILIYNARSSEV-------------------------------------I----S-KL-EGHSKRVTGLVFSDAL 898 (1092)
Q Consensus 862 g~~dg~v~iwd~~~~~~-------------------------------------~----~-~l-~~h~~~V~~l~~spdg 898 (1092)
.+.|++|++|.+..... + . .. .+|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999998753200 0 1 11 3577778899999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE--EeCCcEEEEEcCCceee------
Q 001363 899 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCL------ 970 (1092)
Q Consensus 899 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~i~lwd~~~~~~~------ 970 (1092)
..++++ .|-.|-+|+++-.......+--.+........-|++..|+|....+.. ++.|.|++-|++.....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888876 566799999875332111111111111111135788999998765554 67899999998732211
Q ss_pred -ee--------eccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc-eEEeeccccc----cCCCCccccccc-eE
Q 001363 971 -KQ--------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE-VQCRILSTAY----LRPTTSCLHVYP-HA 1035 (1092)
Q Consensus 971 -~~--------~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~-~~~~~~~~~~----~~~~~~~~~v~~-~~ 1035 (1092)
.. ++.+-...|..+.||++|+++++-.. -+|++||+...+ .+.++..... +..-+-+++|+. ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 00 11222667889999999999997654 589999998653 3444421111 111112344544 56
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1036 ~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
+.|+. |...+.+|+..+...++-...++
T Consensus 343 isfSg-d~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 343 ISFSG-DDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred EEecC-CcccccccccccceeeeccccCC
Confidence 77887 45778888887777776644333
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-08 Score=113.10 Aligned_cols=217 Identities=15% Similarity=0.232 Sum_probs=157.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|....+|++||-+.+.|++|+..|.|+++++.+|.... ...+|..+|+.+.=+.||..++..+....--..+|+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 66789999999999999999999999999999999997665 567899999999999999952222233333578999
Q ss_pred CCC-CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC----CCceEEEEEccCCCEEEE
Q 001363 472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 472 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~s~dg~~l~~ 546 (1092)
+.+ +...++|.+ -.++.|+.+ .+.-+.|+......+||+++.....++-.. ...-....|+|+.+.++-
T Consensus 1174 ~~s~~~~~Hsf~e----d~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE----DKAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred cccccCccccccc----cceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 764 555666653 234555433 233344555567889999998876653221 123366789999988875
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
-| .+||.+..+.++.|.... . -..-.|+|.|..++.-++ |||+++.+.+...+.-. -.
T Consensus 1248 dG---------vLWDvR~~~aIh~FD~ft---~-~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----qc 1305 (1516)
T KOG1832|consen 1248 DG---------VLWDVRIPEAIHRFDQFT---D-YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----QC 1305 (1516)
T ss_pred Cc---------eeeeeccHHHHhhhhhhe---e-cccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----ce
Confidence 32 579999888887776544 1 122359999999999775 99999999887765432 35
Q ss_pred eEEEccCCCEEEE
Q 001363 627 RICFNKNGTLLAV 639 (1092)
Q Consensus 627 ~v~~s~~~~~l~~ 639 (1092)
.+.|+..|..+..
T Consensus 1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred EEEeccCccchhh
Confidence 6888888876553
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.8e-06 Score=86.21 Aligned_cols=223 Identities=13% Similarity=0.123 Sum_probs=139.0
Q ss_pred CCeEEEEEcCCceeeEEecCC--CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCC
Q 001363 822 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 822 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 899 (1092)
+|.|..||..+|+.+...... .....+.++. ++..+++++.++.++.||..+|+.+.+... .+++.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999998887531 1222222332 345777778999999999999999877764 22222111 22455
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCC
Q 001363 900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 978 (1092)
Q Consensus 900 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~ 978 (1092)
.++.++.|+.|..+|..+++..-.......+... .........++..++++ .++.|..+|..+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6676778889999999998754431111111110 12233333347777765 589999999999998776543221
Q ss_pred C---------CEEEEEEecCCCEEEEEECCCc-EEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEE
Q 001363 979 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1048 (1092)
Q Consensus 979 ~---------~v~~l~fs~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~ 1048 (1092)
. .+..-....++ .++.++.++. +.+ |+.+|+.+.+.. ... ... ...+ ++..+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~~---~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IYS---LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------ECE---CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----ccC---Ccee-eCCEEEE
Confidence 1 12222233355 7777777885 555 999999663221 111 111 1222 3577888
Q ss_pred EeCCCcEEEEecCCCCCccc
Q 001363 1049 GLTNGEVYVIEPNEPGDTWA 1068 (1092)
Q Consensus 1049 ~~~dg~v~~w~~~~~~~~~~ 1068 (1092)
++.++.|..||+...+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999998887774
|
... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-05 Score=81.52 Aligned_cols=232 Identities=14% Similarity=0.150 Sum_probs=143.8
Q ss_pred CccccCCCCCceeeecCCCC---CCCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001363 780 PRLYQPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 853 (1092)
Q Consensus 780 ~~~~~~~~g~~~~~~~l~~~---~~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 853 (1092)
+.+||+.+-.......++.. ........+++|.||+++.+.. .-.|.|.|+...+.+..+..+. ...- + |
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~~i--y-P 144 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CWLI--Y-P 144 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EEEE--E-E
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EEEE--E-e
Confidence 34455555444444444431 0112334578999999999886 4779999999999988876432 2111 2 2
Q ss_pred CCCCEEEEEeCCCcEEEEEcC-CceeeEe----eccccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001363 854 HDNNVIAIGMDDSTILIYNAR-SSEVISK----LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 927 (1092)
Q Consensus 854 ~d~~~lasg~~dg~v~iwd~~-~~~~~~~----l~~h~~~V-~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 927 (1092)
..++-+.+.|.||.+.-..+. .|+...+ |..-..++ ..-+++.++..++..+..|.|+--|+............
T Consensus 145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 145 SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 234567788999999999887 4554322 11112222 23455556666766889999999999887655544444
Q ss_pred cCCCCc---CC-CCCceEEEEccCCCEEEE----EeCC-------cEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-
Q 001363 928 TPDGVM---TL-APSETHIQFHKDQTRFLL----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR- 991 (1092)
Q Consensus 928 ~~~~~~---~~-~~~v~~l~~s~dg~~la~----~~d~-------~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~- 991 (1092)
...... .. .+.-.-+++++....|.+ +.++ .|.+||+.+++.+.++... .++.++..|.|.+
T Consensus 225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKP 302 (342)
T ss_dssp SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-
T ss_pred ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCc
Confidence 321100 00 034567899887766655 2222 4889999999999886644 3577999999887
Q ss_pred EEEEE-ECCCcEEEEEcCCCceEEeec
Q 001363 992 MVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 992 ~l~t~-~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
+|++. ..++.+.+||..+|+.+.++.
T Consensus 303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 45444 357899999999999998887
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.4e-05 Score=78.97 Aligned_cols=221 Identities=14% Similarity=0.145 Sum_probs=139.2
Q ss_pred EEEEec-CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe-cCCCE
Q 001363 739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY 816 (1092)
Q Consensus 739 ~l~~s~-~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s-~dg~~ 816 (1092)
+++|.+ ++..+++-...+.|..|+... +. .....+ .....+++. +++++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~----------------------~~-~~~~~~------~~~~G~~~~~~~g~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT----------------------GE-VEVIDL------PGPNGMAFDRPDGRL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT----------------------TE-EEEEES------SSEEEEEEECTTSEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC----------------------Ce-EEEEec------CCCceEEEEccCCEE
Confidence 567777 566555555567777666433 22 211222 126677887 66555
Q ss_pred EEEEeCCeEEEEEcCCceeeEEecC-----CCCCeEEEEEcCCCCCEEEEEeCC--------CcEEEEEcCCceeeEeec
Q 001363 817 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE 883 (1092)
Q Consensus 817 l~~~sdg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~lasg~~d--------g~v~iwd~~~~~~~~~l~ 883 (1092)
+ .+..+.+.++|..+++....... .....+.+++.| +|++.++.... |.|..++.. ++......
T Consensus 55 ~-v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 55 Y-VADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp E-EEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred E-EEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 4 45556666669988865443332 334678999999 88877776544 457777777 55433333
Q ss_pred cccCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCc--eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcE
Q 001363 884 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 959 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~-s~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i 959 (1092)
.-.....|+|+||++.|. +-+..+.|..+++.... ......+....... +..-.+++..+|++.++ ...+.|
T Consensus 132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence 445578899999998765 56677888888886432 22223333222221 13668999999998887 467899
Q ss_pred EEEEcCCceeeeeeccCCCCCEEEEEEe-cCCCEEEEEE
Q 001363 960 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF 997 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~ 997 (1092)
.+++.. |+.+..+..+ ...+++++|. +|.+.|+..+
T Consensus 208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 999987 8877775554 4589999995 6666666543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.7e-05 Score=78.81 Aligned_cols=219 Identities=16% Similarity=0.126 Sum_probs=142.9
Q ss_pred EEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC-CCCCEEEEEeC
Q 001363 339 SMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-PDGSLLGVAYS 416 (1092)
Q Consensus 339 ~v~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s-pdg~~las~~~ 416 (1092)
+++|.+ +|. |+.+-...+.|..|+..++..... ... ....+++. ++|++ +++..
T Consensus 4 gp~~d~~~g~-l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l-~v~~~ 59 (246)
T PF08450_consen 4 GPVWDPRDGR-LYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRL-YVADS 59 (246)
T ss_dssp EEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEE-EEEET
T ss_pred ceEEECCCCE-EEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEE-EEEEc
Confidence 578898 554 788877889999999988765431 111 26677777 66554 44555
Q ss_pred CCEEEEEEccCCCcccceEEEc--c-cccceeEEEEecCCCcEEEEEEeCC--------CcEEEEECCCCceeEEEecCC
Q 001363 417 KHIVQLYAYHGGSDARQQLEID--A-HVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~~~~s~d~~~l~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
.+ +.++|..+++.. ...... . .....+.+++.++|+ +.++.... |.|..++.. ++...... .-
T Consensus 60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL 133 (246)
T ss_dssp TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence 55 566699887533 222331 2 345788999999999 56665433 457777766 55433333 34
Q ss_pred cCeEEEeecccCCccEE-EEEecCCeEEEEEcCCCCc----eE-E--ecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 486 APVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGA----RV-D--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~----~~-~--~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
...+.++|++ +++.| ++-+..+.|..++++.... .. . +....+....+++..+|+..++... .+.|
T Consensus 134 ~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I 207 (246)
T PF08450_consen 134 GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRI 207 (246)
T ss_dssp SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEE
T ss_pred ccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEE
Confidence 5568889965 55555 5667788899999875443 11 1 2222234788999999987776553 5569
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEE-cCCCCEEEEEe
Q 001363 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAG 597 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s 597 (1092)
.++|.. |+.+..+.... ..+++++| .++.+.|++.+
T Consensus 208 ~~~~p~-G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELPV---PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-SCEEEEEE-SS---SSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-ccEEEEEcCCC---CCEEEEEEECCCCCEEEEEe
Confidence 999988 88888887764 57899999 46767776654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-06 Score=90.99 Aligned_cols=298 Identities=13% Similarity=0.140 Sum_probs=190.8
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
|...|+.+..+ -.+++++++-||.++.|.-..- .|..+.. ....|...+.+++.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--------------------sGvEfVK---hFraHL~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--------------------SGVEFVK---HFRAHLGVILSLAVSY 63 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCc--------------------cceeehh---hhHHHHHHHHhhhccc
Confidence 66667666544 4567899999999999862210 1111111 1113777888999999
Q ss_pred CCCEEEEEe--CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCC--CEEEEEeCCCcEEEEEcCCce-eeEee-ccc
Q 001363 813 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN--NVIAIGMDDSTILIYNARSSE-VISKL-EGH 885 (1092)
Q Consensus 813 dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~--~~lasg~~dg~v~iwd~~~~~-~~~~l-~~h 885 (1092)
+|.++.+.+ |..++++|+++...+..++-.. ....+...++.|. .+-++.-.+|.+.++|-.... ....+ .-|
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 999999976 6889999998776653332211 1122333344111 233334467899999976543 33333 349
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee--eee------eecCCCCcCCCCCceEEEEccCCCEEEE-EeC
Q 001363 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRS------LQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE 956 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~--~~~------~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d 956 (1092)
..+|.++.+++-+..++|....|.|.-|..+. ..+. ... -..+-+.........++.|+|+|..+++ +.|
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence 99999999999999999999999999999884 1000 000 0001111122245789999999999999 788
Q ss_pred CcEEEEEcCCceeeeeeccC-------------------------------C-CCCEEEEEEecCCCEEEEEECCCcEEE
Q 001363 957 THLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 957 ~~i~lwd~~~~~~~~~~~~~-------------------------------h-~~~v~~l~fs~dg~~l~t~~~Dg~i~v 1004 (1092)
..|++++..+|+.++.+-.. | ...-+.++|...|.+|+-++-=| |+|
T Consensus 223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv 301 (558)
T KOG0882|consen 223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV 301 (558)
T ss_pred cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence 99999999998766542110 2 34446678989999999887654 899
Q ss_pred EEcCCCceEEeecccc---------ccCCC-Ccccc------ccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001363 1005 HEASNLEVQCRILSTA---------YLRPT-TSCLH------VYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 1005 wd~~~~~~~~~~~~~~---------~~~~~-~~~~~------v~~~~~~~~p~d~~~l~~~~~dg~v~~w 1058 (1092)
.++.++.+.+.+.... +.... .+... ..++ +.+.+ |+..++++-.-..+++|
T Consensus 302 in~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 302 INLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence 9999998876543111 11000 00000 1111 22444 67888899888999998
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.6e-07 Score=86.97 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=109.4
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---eeEEecCCC-----CCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001363 800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1092)
.|...+.++.|..|.+.++++.|=.|-+|+++--. .+..+++|. .-|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 47888999999999999999999999999986322 234445554 3578999999777888889999999999
Q ss_pred EcCCcee----------------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001363 872 NARSSEV----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 872 d~~~~~~----------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
|++...+ +.-+.+-...|..+.|+++|+++++-+. -+|+|||+...+. ++.+..-|...
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~----pikTi~~h~~l 324 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN----PIKTIPMHCDL 324 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC----CceeechHHHH
Confidence 9973211 1112223456888999999999997654 5699999986431 22222111100
Q ss_pred ---------CCC---ceEEEEccCCCEEEEE-eCCcEEEEE
Q 001363 936 ---------APS---ETHIQFHKDQTRFLLV-HETHLAIYE 963 (1092)
Q Consensus 936 ---------~~~---v~~l~~s~dg~~la~~-~d~~i~lwd 963 (1092)
... -..+.||.|.+.+.+| ..+...+|-
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 011 2457889888888874 455555555
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-05 Score=77.61 Aligned_cols=201 Identities=14% Similarity=0.104 Sum_probs=134.4
Q ss_pred CEEEEEe-CCeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEE
Q 001363 815 AYLFSAS-GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892 (1092)
Q Consensus 815 ~~l~~~s-dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 892 (1092)
-+||.|+ .|...+|...+.+... ....+...|+-+.-.-+...-+..++.|.++++.+++.+.....+.-..-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4666665 5899999998665433 3333444332211111122345567888888888887654333222111237889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceee-
Q 001363 893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCL- 970 (1092)
Q Consensus 893 ~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~- 970 (1092)
++|+|++++++.+....|..|.++.......+....... ..-.+..||.....+|+ ..||++.|||++.....
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 999999999999999999999998754333221111111 23568899999999998 68999999999865432
Q ss_pred ---eeeccCCCCCEEEEEEecCCC--EEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 971 ---KQWFPISSVPISQATFSCDCR--MVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 971 ---~~~~~~h~~~v~~l~fs~dg~--~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
....+.|.+.+..+.||+-|. +|+..-.-+.+.|-|+++++-...+....
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 223456899999999998663 45555566789999999998887776444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-05 Score=83.53 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=121.4
Q ss_pred CCCEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee-cccc---C
Q 001363 813 NDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS---K 887 (1092)
Q Consensus 813 dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~---~ 887 (1092)
++..++++ .++.+..||..+|+.+..+............ .+..+++++.++.++.+|..+|+.+... .... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 45555555 5799999999999998887653221122222 3346666778899999999999998874 3221 1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC--CCCCceEEEEccCCCEEEEEeCCc-EEEEEc
Q 001363 888 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--LAPSETHIQFHKDQTRFLLVHETH-LAIYEA 964 (1092)
Q Consensus 888 ~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~s~dg~~la~~~d~~-i~lwd~ 964 (1092)
.........++..++.+..++.|..+|.++|+..-............ ....+..-....++..+++..++. +.+ |+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~ 190 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL 190 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence 12223333347888888889999999999988654333322221110 000122333333554444456665 555 99
Q ss_pred CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEe
Q 001363 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~ 1015 (1092)
.+++.+-. .. ...+.. ....++..|+.++.++.+..||+.+|+....
T Consensus 191 ~tg~~~w~-~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 191 ATGEKLWS-KP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEE-EC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEE-ec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 99986632 11 122222 2457788888888999999999999988743
|
... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-06 Score=83.90 Aligned_cols=209 Identities=14% Similarity=0.207 Sum_probs=126.4
Q ss_pred ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001363 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 416 (1092)
|+.+.|+-+- .|+++..++.+.....-++.+.. .|.=.....+++. +..|.++-.+-+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence 6667777654 57888888777776655544332 2221111122222 2235554444455556789999999
Q ss_pred CCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEe-----CCCcEEEEECCCCceeEEEecCCcCeEE
Q 001363 417 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
||.+.+.+.+.-..+.. .+. .|.+. .+.+....+. .+.+++ .-+..++|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~~~~~~--~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALMS--RIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhhh--hcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 99999999876222111 111 12221 1223333344 233322 2234566665544333222222334888
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCC
Q 001363 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
++-+|... +.+++|+.||.+-+||++...... .+..|+.++..+.|+| ++..|+++++ ++.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 88887654 688999999999999999875443 5677888999999999 5678888886 55599999754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.6e-05 Score=87.07 Aligned_cols=250 Identities=14% Similarity=0.164 Sum_probs=147.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceee
Q 001363 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
+.|.++.|..+.+.++.+...|.|.+-|.++......-... ..|.+++|+||+.+++..+..+++.+-...- .++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~f-~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKDF-EPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEeccc-cchh
Confidence 57999999999999999999999999988876554333333 3489999999999999999988887754321 0110
Q ss_pred ecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEE
Q 001363 659 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 738 (1092)
Q Consensus 659 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~ 738 (1092)
...-+. ...+.+....+|++.....|.+ +...
T Consensus 145 E~~L~~------d~~~~sk~v~VGwGrkeTqfrg------------------------------------------s~gr 176 (1265)
T KOG1920|consen 145 EKPLDA------DDERKSKFVNVGWGRKETQFRG------------------------------------------SEGR 176 (1265)
T ss_pred cccccc------ccccccccceecccccceeeec------------------------------------------chhh
Confidence 000000 0000011111111111111100 0000
Q ss_pred EEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeec-CCCCCCCCCeeEEEEecCCCEE
Q 001363 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYL 817 (1092)
Q Consensus 739 ~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-l~~~~~~~~v~~~~~s~dg~~l 817 (1092)
..+.-+ ..... +........-..+.|.-||+++
T Consensus 177 ~~~~~~----------------------------------------------~~~ek~~~~~~~~~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 177 QAARQK----------------------------------------------IEKEKALEQIEQDDHKTSISWRGDGEYF 210 (1265)
T ss_pred hccccc----------------------------------------------ccccccccchhhccCCceEEEccCCcEE
Confidence 000000 00000 0000012223468999999999
Q ss_pred EEEe-----C-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe---CCCcEEEEEcCC---ceeeEeeccc
Q 001363 818 FSAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS---SEVISKLEGH 885 (1092)
Q Consensus 818 ~~~s-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~---~~~~~~l~~h 885 (1092)
|+.. + ..|+|||-+ |.+-..-....+.-.+++|-| .|.++|+-. .|+.|.+|.-+. |+....+...
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD 288 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence 9853 4 679999987 554433333445557899999 888888753 455799987653 2223333434
Q ss_pred cCCeEEEEEcCCCCEEEE---EeCCCcEEEEEcCCCceeeeeeeec
Q 001363 886 SKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGIQTCRSLQT 928 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s---~s~Dg~I~iwd~~~~~~~~~~~~~~ 928 (1092)
..+|..++|+.++..||+ ......|++|-+..........++.
T Consensus 289 e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~ 334 (1265)
T KOG1920|consen 289 EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQF 334 (1265)
T ss_pred ccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEec
Confidence 455999999999999998 4555569999998865444333333
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.4e-05 Score=87.99 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=90.9
Q ss_pred EEecCCCEEEEEeCCeEEEEEcCC----c-eeeEEecCCCCCeEEEEEcCCCCCEEEEE-eCCCcEEEEEcCCcee----
Q 001363 809 ALSKNDAYLFSASGGVISLYIVMT----F-KTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV---- 878 (1092)
Q Consensus 809 ~~s~dg~~l~~~sdg~i~iwd~~~----~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~~~~---- 878 (1092)
++.++|++... .++.|.+.|..+ + +.+..+. -......++++| |+++++++ ..+.+|.|+|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34557887665 467899999988 3 4444443 455678899999 77766654 4588999999988552
Q ss_pred --------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CceeeeeeeecCCCCcCCCCCceEEEE
Q 001363 879 --------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG------WGIQTCRSLQTPDGVMTLAPSETHIQF 944 (1092)
Q Consensus 879 --------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~l~~ 944 (1092)
+.+.+--.+ -...+|.++|+...|..-|..|..|++.. ++. ....+....-+.. +-.+.-
T Consensus 360 ~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~-~~~v~~k~dV~y~----pgh~~~ 433 (635)
T PRK02888 360 KIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEK-VDPIVQKLDVHYQ----PGHNHA 433 (635)
T ss_pred cCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhcccc-CCcceecccCCCc----cceeee
Confidence 334333223 34578999999999999999999999986 111 1123333333322 223333
Q ss_pred ------ccCCCEEEEE
Q 001363 945 ------HKDQTRFLLV 954 (1092)
Q Consensus 945 ------s~dg~~la~~ 954 (1092)
.|||++|++.
T Consensus 434 ~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 434 SMGETKEADGKWLVSL 449 (635)
T ss_pred cCCCcCCCCCCEEEEc
Confidence 7899999883
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00077 Score=65.65 Aligned_cols=136 Identities=13% Similarity=-0.019 Sum_probs=88.6
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC
Q 001363 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 579 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1092)
.+++.|+..+.+.--|..++........ +..+.+-+.- -|++++.+.. .+.+++.+.++|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence 4677777777777777777665554332 2233333322 4666777776 4459999999998887777644 2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001363 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1092)
--......+++..+.+|+.|++.+..|..+...+...+..+.. ..+-+..|-...|.++...|.+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceE
Confidence 2233456788999999999999999999999999887766553 2334445522233334343443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00011 Score=76.66 Aligned_cols=285 Identities=12% Similarity=0.128 Sum_probs=153.1
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeCCCC---
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG--- 621 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~--- 621 (1092)
+.++++|..+++.+..+..- -...+..+|+++.+++++ ..-.|.+||..+-.....+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 45999999999988888763 345577899999998754 334699999999988887765542
Q ss_pred --CCCCceEEEccCCCEEEEEeC--CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCC
Q 001363 622 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1092)
Q Consensus 622 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 697 (1092)
.......+++.||+++.+... ..+|.|.|+..++.+..+.... |.-+-|.+
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~--------------------- 146 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG--------------------- 146 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE---------------------
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC---------------------
Confidence 123456788888888877543 4678888888776655443211 00111100
Q ss_pred CccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccc
Q 001363 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777 (1092)
Q Consensus 698 ~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 777 (1092)
.+.+.+-+.||.+....++............-......-+..-++...+..++-.+-+|.++--++.......
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~------- 219 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF------- 219 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-------
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-------
Confidence 0112333334444333333111110000000000111122233444455555556667777766655432211
Q ss_pred cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CC-------eEEEEEcCCceeeEEecCCCCCe
Q 001363 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GG-------VISLYIVMTFKTILTIMPPSPTA 846 (1092)
Q Consensus 778 ~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg-------~i~iwd~~~~~~~~~~~~~~~~i 846 (1092)
..-|...+...... .. ..+.-.-+++++..+.|.+.- ++ .|.++|+.+++.+.++.. ...+
T Consensus 220 --~~~~~~~t~~e~~~-~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~ 291 (342)
T PF06433_consen 220 --GKPWSLLTDAEKAD-GW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI 291 (342)
T ss_dssp --EEEEESS-HHHHHT-TE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred --cCcccccCcccccc-Cc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence 01121111000000 00 012223466766554444431 11 388999999999998873 2457
Q ss_pred EEEEEcCCCCCEEEEEe-CCCcEEEEEcCCceeeEeecc
Q 001363 847 TSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
.+++++.++..+|++.+ .++.+.+||..+|+.+.++.+
T Consensus 292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 79999996666776554 578999999999999988874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.3e-05 Score=85.99 Aligned_cols=182 Identities=12% Similarity=0.069 Sum_probs=117.5
Q ss_pred EecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC----cEEEEEcCCceeeEeec
Q 001363 810 LSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLE 883 (1092)
Q Consensus 810 ~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~ 883 (1092)
++|||+.+...+ .+.+.+.|.++.+...++.-. +....++++| +++++++.+.+. ++..-+..+...+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 567887765554 477889999988877776533 2456789999 888888776322 22222222211111111
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----CceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eCC
Q 001363 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HET 957 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~ 957 (1092)
- ..+ -++.++|++... .++.|.+.|..+ +. .....+.... ....+++||||++++++ .+.
T Consensus 278 i--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVanklS~ 343 (635)
T PRK02888 278 I--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKLSP 343 (635)
T ss_pred h--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCCCC
Confidence 0 000 133457877665 367799999887 22 1122333332 35689999999999984 578
Q ss_pred cEEEEEcCCcee------------eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001363 958 HLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 958 ~i~lwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
++.|+|+.+.+. ..+... .......+|.++|....|-.-|..|..|++..
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999999987553 222221 34455678999999888888999999999987
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.6e-07 Score=63.29 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd 914 (1092)
|+++.++.+|.+.|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.6e-05 Score=83.25 Aligned_cols=267 Identities=14% Similarity=0.189 Sum_probs=148.8
Q ss_pred cCCCceEEEEE--------cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 343 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 343 spdg~~llasg--------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
|||++++|..- +..+.+.|+|+++++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78998765522 123668889988876553 12225678889999999999998
Q ss_pred eCCCEEEEEEccCCCcccceEEEcc-------c---------ccceeEEEEecCCCcEEEEEEeCCCc------------
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKT------------ 466 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~~s~d~~~l~l~s~~~d~~------------ 466 (1092)
. ++.|.+++..++...+. +..| - -+.-..+.|||||+++.++... +..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d-~~~v~~~~~~~~~~~ 136 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD-EREVPEYPLPDYSPP 136 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE--TTS-EEEEEEESSS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC-CcCCceEEeeccCCc
Confidence 5 56799999887743321 2222 0 1123578899999963333222 111
Q ss_pred -----------------------EEEEECCCCceeE-EEe----cCCcCeEEEeecccCCccEEEEE--ecCC---eEEE
Q 001363 467 -----------------------IKVWDAVTGSRTY-SFE----GHGAPVYSLCPHAKENIHFIFSI--SVDG---KIKA 513 (1092)
Q Consensus 467 -----------------------i~vwd~~~~~~~~-~~~----~~~~~v~~i~~~~~~~~~~l~s~--~~dg---~i~v 513 (1092)
+.|+|+++++... ... .-...+..+.|.+ ++..|+.. ..+. .+.+
T Consensus 137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEE
T ss_pred cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEE
Confidence 3344554444321 111 1223345555543 33423222 2222 2556
Q ss_pred EEcCCCCceEEecC-CCCc---eEEEEEc-cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce-EEEEEc
Q 001363 514 WLYDSLGARVDYDA-PGLG---CTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-SVVHFD 587 (1092)
Q Consensus 514 wd~~~~~~~~~~~~-~~~~---i~~~~~s-~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~~ 587 (1092)
+|..++........ .... .....+. +++..++..+. +++-..|++++..++.......+ . -.| ..+.++
T Consensus 215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G-~---~~V~~i~~~d 289 (353)
T PF00930_consen 215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSG-D---WEVTSILGWD 289 (353)
T ss_dssp EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-S-S---S-EEEEEEEE
T ss_pred EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccC-c---eeecccceEc
Confidence 67766555443322 1222 2345554 78887777765 67788999999988875433333 2 456 347788
Q ss_pred CCCCEEEE-EeC----CCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 588 TAKDQILA-AGD----DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 588 ~~~~~l~~-~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
++++.++. +.. ...++.-++..+..+..+...... ...+.|||+|++++....
T Consensus 290 ~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 290 EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 88777754 443 235666677634555666544332 148999999999886654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.1e-07 Score=89.90 Aligned_cols=168 Identities=16% Similarity=0.103 Sum_probs=126.1
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
+.++||-+-.-+-++.+.+-.|-+-|+++|-... + ...+.|.++.|...+.++..|..+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence 4447764432223444556789999999885442 1 256789999999999999999999
Q ss_pred CEEEEEEccCCCc--ccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCce---eEEEecCCcCeEEE
Q 001363 418 HIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL 491 (1092)
Q Consensus 418 ~~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~i 491 (1092)
|.|...|+..+.. ...... -.|...|+++.... +++ .|.+.+.+|+|++||.+--++ ++.+.||-..-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 9999999986521 111112 25889999998877 455 788899999999999987666 88899997766666
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 529 (1092)
-++..+....+++++.|...|+|.++.+....++....
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 66666777799999999999999999888776665443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.1e-06 Score=86.41 Aligned_cols=258 Identities=15% Similarity=0.086 Sum_probs=175.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-CCcEEEEECC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV 473 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~ 473 (1092)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|-+.|.+++.+-|+. ++.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77788777655 467999999999999998765333333335678999999999999998 7888777 9999999988
Q ss_pred CCceeEEEecCCcCeEEEeecccC-Cc--cEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEccCCCEEEEEe
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKE-NI--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~-~~--~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
+-..+.-++--.-|= .+.|...+ +- .+-++.-.+|.+.++|-....+. ..-..|..+|..+.+++-+..+++.-
T Consensus 85 n~DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred ccchhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 755443222111111 11121111 11 23344456788999987655433 34455778999999999999888764
Q ss_pred cCCCCceeEEEEeCCC------CeEEEEE------eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001363 549 TSKEGESFLVEWNESE------GAIKRTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~------~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1092)
..+.|..|.... .+..-.+ -+.........++.|+|++..+.+-+.|..|++++..+|+.++.+
T Consensus 164 ----~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 ----ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ----ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 367899998763 1111111 111112356788999999999999999999999999998776544
Q ss_pred eCCC-------------------------------CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001363 617 DAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 617 ~~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
.... ....-..++|...|++|+-++-- -|++.++.+++..+.+.
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILG 314 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEec
Confidence 3110 11123457888889999888775 48899999887766554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.9e-06 Score=81.90 Aligned_cols=208 Identities=15% Similarity=0.176 Sum_probs=124.4
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce-eeEeecc-ccCCeEEEEEcCCCCEEEEEeC-----CCc
Q 001363 837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGG-----DAQ 909 (1092)
Q Consensus 837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~V~~l~~spdg~~l~s~s~-----Dg~ 909 (1092)
..+..|..+-.+-+.+- -+.-++++..||.+.+++.+.-. ...+... |.+. .+......++.+.+++. -+.
T Consensus 83 ~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred eeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccc
Confidence 33433443333334444 46688999999999999877521 1111111 2221 11222234444443321 123
Q ss_pred EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE--EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEe
Q 001363 910 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFS 987 (1092)
Q Consensus 910 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs 987 (1092)
.++|+++..+ ++.........|.+++-.|..+.+++ +.||.+.+||.+.......++..|..+++.+.|.
T Consensus 161 ~~a~~~~p~~--------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FH 232 (319)
T KOG4714|consen 161 FYANTLDPIK--------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFH 232 (319)
T ss_pred eeeecccccc--------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheecc
Confidence 5666666422 11111111124888999998776665 4778999999999988888888999999999999
Q ss_pred c-CCCEEEEEECCCcEEEEEcCCCceEEeec---cccccCCCCccccccc------------eEE-EECCCCCCEEEEEe
Q 001363 988 C-DCRMVFTSFVDGTLSIHEASNLEVQCRIL---STAYLRPTTSCLHVYP------------HAI-AAHPLKPTQFAVGL 1050 (1092)
Q Consensus 988 ~-dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~v~~------------~~~-~~~p~d~~~l~~~~ 1050 (1092)
| ++..|+++++||.+--||..+--+-.... ...|+.. +++++ +++ .|+- -+..|++|+
T Consensus 233 pk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsg----D~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgt 307 (319)
T KOG4714|consen 233 PKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSG----DPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGT 307 (319)
T ss_pred CCCchheeEecCCCcEEEEcCCCceEEecCccccccccccC----CcccceEeeeccccccceeeeeeec-cCceEEecc
Confidence 8 67899999999999999988633221111 1112222 22222 111 1222 256899999
Q ss_pred CCCcEEEEe
Q 001363 1051 TNGEVYVIE 1059 (1092)
Q Consensus 1051 ~dg~v~~w~ 1059 (1092)
+-+.|++.+
T Consensus 308 d~eaIyl~~ 316 (319)
T KOG4714|consen 308 DAEAIYLTR 316 (319)
T ss_pred ccceEEEec
Confidence 999999876
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3e-05 Score=79.84 Aligned_cols=251 Identities=13% Similarity=0.156 Sum_probs=145.7
Q ss_pred eecCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
++.+|...|..++|||..+ +|..++.+..|+|.|+++...+. .+..| ..+++++|.-|... ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999877 78888999999999999976554 44456 68999999999876 8889999999999
Q ss_pred EECCCCce-eEEEec--CCcCeEEEeeccc----CCccEEEEEecCCeEEEEEcCCCCc--eEEec-CCCCceEEEEEcc
Q 001363 470 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYD-APGLGCTRMAYSA 539 (1092)
Q Consensus 470 wd~~~~~~-~~~~~~--~~~~v~~i~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~-~~~~~i~~~~~s~ 539 (1092)
||++..+- +..+.+ ...+|..++..+. +.+.+++..+.+ +..|.+..... ..... ...+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 223322 2234444432211 122344443332 34454432221 12122 2234555666666
Q ss_pred CCCEEEEEecCCCCceeEE----EEeCCCCeEEEEEe----eccc-cCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q 001363 540 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ----GLQL-QHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 609 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 609 (1092)
-.+.++.....+...-+++ --|-.+|..+..-+ |... ....-..+.-.+++++++. +...+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 5566655544321111111 11222232221111 1000 0001112222345566655 55678899999999
Q ss_pred CceEEEEeCCCCCCCCceEEEcc-C-CCEEEEEeCCCeEEEEECC
Q 001363 610 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP 652 (1092)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iw~~~ 652 (1092)
++.++++.... .|..++... + +.+|++-++ ..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLTD-DRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhheec-ceEEEEecC
Confidence 99999998763 355555443 3 446665554 578887654
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.3e-07 Score=84.45 Aligned_cols=133 Identities=22% Similarity=0.278 Sum_probs=96.9
Q ss_pred HHHHHHHhcCcCHHHHHHHhccCCC-cCCccccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001363 38 MKFFEDMILDGKWEDVEQYLSSFTK-VDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA 116 (1092)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~-~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1092)
...++++|++|+++.|++.++.... +... ...+.|.|++|+|+|+|..++..+|+.+.|+.+.|......+.++.+.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~--~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR--NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc--CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6789999999999999999987522 2111 123889999999999999999999999999999766543456777888
Q ss_pred HhhcccCccc--ccccccccCCChHHHHHHHHHHHhhcccCcccccccCCCCCc-cHHHHHHHHHHHHHH
Q 001363 117 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ 183 (1092)
Q Consensus 117 ~~~~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~q 183 (1092)
.+|...+..+ ...+..+.+ ...|+++.+.+.+.+-.... +| .+.|..++++....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~~--~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELLS--PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHhC--hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 8887766544 222222212 36788888888887655332 44 466888888776554
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.5e-06 Score=93.71 Aligned_cols=180 Identities=16% Similarity=0.182 Sum_probs=131.8
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEE
Q 001363 813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 334455554 677888999988887777655555655555 6789999999999999999999999999999999977
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC--CCEEEEEeCCcEE
Q 001363 892 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLA 960 (1092)
Q Consensus 892 l~~spdg~~l~s~s~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d--g~~la~~~d~~i~ 960 (1092)
+.. .|+.|+++|. |.-|+|||+..-+... +++.+.+ ..-+.|.|. .+..+++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 6899999985 5568999998743222 3333333 234677775 3444457888999
Q ss_pred EEEcC---CceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001363 961 IYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus 961 lwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
+-|.. +...-.......+..+..+++|++|..|+.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88843 22111111223356699999999999999999999999997
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.2e-05 Score=87.62 Aligned_cols=282 Identities=11% Similarity=0.161 Sum_probs=159.5
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
.+.|.++.|.-++.. +..+..+|.|.+-|.++..... ...-...|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 469999999999975 5667788999999988876553 2234578999999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcc---cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcCeE
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVY 489 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~ 489 (1092)
.+..+++.+-+-.- ..+... .+.. ..+....+-|-....+ +.|+ .|....-+...... +....-+ ..=+
T Consensus 127 iT~~~tll~mT~~f-~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDF-EPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQD-DHKT 199 (1265)
T ss_pred EeCCcEEEEEeccc-cchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhc-cCCc
Confidence 98888776644321 111100 0100 0111222333222211 1111 11111111000000 0000111 1223
Q ss_pred EEeecccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 490 SLCPHAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
+++| .+||+++++. ...+.|++||-+ +.....-....+--.+++|-|.|..+++.....+ +..|.++..+
T Consensus 200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN- 274 (1265)
T KOG1920|consen 200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN- 274 (1265)
T ss_pred eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC-
Confidence 4566 6688888873 233789999876 3333333333344567999999999998776544 5568888754
Q ss_pred CeEEEEEeecc-ccCCceEEEEEcCCCCEEEE---EeCCCcEEEEECCCCceE--EEEeCCCCCCCCceEEEccC-CCEE
Q 001363 565 GAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILA---AGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN-GTLL 637 (1092)
Q Consensus 565 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~---~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l 637 (1092)
|-.-..|.-.. .....+..++|+.++..|++ ......|++|-..+.... +.+..... .-+-|+|. ...+
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTL 350 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeE
Confidence 33322222111 11134899999999998887 445556999998876543 33332222 22778883 2334
Q ss_pred EEEeCCCeEEEEECC
Q 001363 638 AVIANENRIKILETP 652 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~ 652 (1092)
.+-..+|...+++..
T Consensus 351 ~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 351 HVLRESGQRLVRDFA 365 (1265)
T ss_pred EEEecCCcEEEEEEE
Confidence 444466666665543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00074 Score=65.76 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=81.3
Q ss_pred ecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEE
Q 001363 342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 421 (1092)
Q Consensus 342 ~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~ 421 (1092)
.-+|.++++..|+..+.+.--|..+|+..-... -...|.+-+.- -|++++.|...|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 345556789999999999999999998775311 11222222221 477899999999999
Q ss_pred EEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 422 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 422 iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+-+.++|+.......+..- .+ .....+++. ++..|+.|++.+.-|..+..+++..+
T Consensus 77 fl~~~tGs~~w~f~~~~~v--k~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETV--KV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEEecchhheeeeeehhhh--cc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecc
Confidence 9999999766543322211 11 234456777 89999999999999999988887754
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.8e-07 Score=62.40 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.3
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEe
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd 363 (1092)
++++++.+|++.|++++|+|++. ++++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46789999999999999999998 799999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-06 Score=87.66 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=113.0
Q ss_pred EEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc-----eeeEeeccccCCeEE
Q 001363 817 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-----EVISKLEGHSKRVTG 891 (1092)
Q Consensus 817 l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~~~l~~h~~~V~~ 891 (1092)
+++|.+-.+-+-|+++|-. +.|. ..+.|.++.|.. .+.++..|+.+|.|..+|++.+ .+...+. |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 4455577788889887743 3343 567888999987 7889999999999999999874 3555665 9999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCcee
Q 001363 892 LVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC 969 (1092)
Q Consensus 892 l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~ 969 (1092)
+..-. ++++|.+.+.+|+|++||+..-+... -+...+||......+ -+.+.+....+++ |.|-..+||.+..|..
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN~~a~l-~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVNLSAYL-PAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeeccccccccc-ccccccccceEEEccCeeEEEEEecccCce
Confidence 88776 78899999999999999998743222 477778876532222 2334555555655 7888999999999998
Q ss_pred eeeec
Q 001363 970 LKQWF 974 (1092)
Q Consensus 970 ~~~~~ 974 (1092)
+.+..
T Consensus 381 l~tip 385 (425)
T KOG2695|consen 381 LCTIP 385 (425)
T ss_pred eeccC
Confidence 88754
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00011 Score=81.56 Aligned_cols=138 Identities=10% Similarity=0.071 Sum_probs=100.9
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.--+++..++ +++.|+.-|.+.+|+-.+|+.+... ..+-.+.+..+..|++..++|.|
T Consensus 34 ~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAag 94 (726)
T KOG3621|consen 34 ARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAAG 94 (726)
T ss_pred ceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhhh
Confidence 3666667778888 6899999999999999888766421 22345567778899999999999
Q ss_pred eCCCEEEEEEccCCCcccceEE---EcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCCcC
Q 001363 415 YSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGAP 487 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~ 487 (1092)
+..|.|.++-+..+..-..... -..|...|++++|++|+. .+++|...|+|..-.+.+. ...+.+......
T Consensus 95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~ 172 (726)
T KOG3621|consen 95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE 172 (726)
T ss_pred cCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence 9999999999887433222111 123778999999999999 7999999999999887772 112333334556
Q ss_pred eEEEee
Q 001363 488 VYSLCP 493 (1092)
Q Consensus 488 v~~i~~ 493 (1092)
|..+..
T Consensus 173 IVQlD~ 178 (726)
T KOG3621|consen 173 IVQLDY 178 (726)
T ss_pred eEEeec
Confidence 666654
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.5e-06 Score=86.90 Aligned_cols=173 Identities=17% Similarity=0.266 Sum_probs=119.1
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhccCC-CcCCccccchhhhH
Q 001363 5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFE 75 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~ 75 (1092)
++-+-|+|..||..+||..+|..|-++|.+. .++..++++|++|+...|+.....-+ .+. +..-.+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 3446799999999999999999999999975 23788899999999999988875421 111 112236699
Q ss_pred hHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccC
Q 001363 76 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEAN 155 (1092)
Q Consensus 76 i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~ 155 (1092)
++.|.|+||+..+++.+|+.+.++.|.|........++....++.+....+... +.+-....| ++.|+.++..+
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~r---w~~l~~lF~s~ 266 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADR---WSVLADLFLSE 266 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHH---HHHHHHHhhHH
Confidence 999999999999999999999999999998777788888888888865432221 111112222 23344333322
Q ss_pred cccccccCCCCCccHHHHHHHHHHHHHHHh-cCCC
Q 001363 156 PILQGKLKFPSIKRQRLRRLINQSLNWQHV-HCAN 189 (1092)
Q Consensus 156 ~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~-~c~~ 189 (1092)
.. .-..+|+-| +|.++|+--+..|.- .|..
T Consensus 267 a~--~l~~i~~~~--~L~~~l~~GLsalKTp~c~~ 297 (389)
T KOG0396|consen 267 AL--KLFGIPINP--ALTIYLQAGLSALKTPRCLN 297 (389)
T ss_pred HH--HHhCCCCCc--HHHHHHHhhhhhcccccccc
Confidence 21 112233223 488888877777743 3443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00048 Score=76.43 Aligned_cols=303 Identities=12% Similarity=0.100 Sum_probs=155.5
Q ss_pred ccCCCEEEEEecCC-----CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001363 538 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 538 s~dg~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
|||+++++...... +..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|++++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 57888777643211 1245689999999877665554 2 5788899999999988876 57899999888744
Q ss_pred EEEEeCCCC----------------CCCCceEEEccCCCEEEEEeCC-CeEEEEECC---CCceeeecccccCceeeeee
Q 001363 613 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSV 672 (1092)
Q Consensus 613 ~~~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~---~~~~~~~~~~~~~~v~~~~~ 672 (1092)
.+ +...+. ...-..+.||||+++|+....| ..+..+.+. .... ....+..+.+
T Consensus 76 ~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y 148 (353)
T PF00930_consen 76 TQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY 148 (353)
T ss_dssp EE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred EE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence 43 322220 1223578899999999887553 333333221 1110 0001111111
Q ss_pred cCCCccccccccCCceeecCCCCCCCccceeeccccc--cceeccccccCccccccccC--CccccccEEEEEEecCCcE
Q 001363 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA 748 (1092)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~--i~lw~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~ 748 (1092)
. ..|...-. +.++++..++.. .+..+ .......+..+.|.++++.
T Consensus 149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence 1 11111112 233443322221 11111 0124566889999999984
Q ss_pred EEEeecC---CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe-cCCCEEEEEe--C
Q 001363 749 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G 822 (1092)
Q Consensus 749 l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s-~dg~~l~~~s--d 822 (1092)
++..-.+ ..+.+.. +|+.++.+.........+--.......+. +++..++..+ +
T Consensus 198 l~~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp EEEEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred EEEEEcccCCCEEEEEE--------------------EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 4444332 2233322 23333332222111111111222355555 7776666665 4
Q ss_pred C--eEEEEEcCCceeeEEecCCCCCeEE-EEEcCCCCCEEEEEeCCC----cEEEEEcCCceeeEeeccccCCeEEEEEc
Q 001363 823 G--VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS 895 (1092)
Q Consensus 823 g--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 895 (1092)
| .|.+++...+. ...+....-.|+. +.++++++.+.+++..++ .++.-++.++..+..+....+.-..+.||
T Consensus 258 G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 258 GYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS 336 (353)
T ss_dssp SSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred CCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence 4 47777777665 3455545556744 678884455555666533 56666666233455555433333689999
Q ss_pred CCCCEEEEE
Q 001363 896 DALNILVSS 904 (1092)
Q Consensus 896 pdg~~l~s~ 904 (1092)
|||++++-.
T Consensus 337 pdg~y~v~~ 345 (353)
T PF00930_consen 337 PDGKYYVDT 345 (353)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999998754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0024 Score=68.12 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=139.2
Q ss_pred EeecCCCceEEEEEcCCCc--EEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-CcEEEEEECCCCCEEEEEeC
Q 001363 340 MDFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~ 416 (1092)
=+|.+||++||.++..||. +.+-|+.+++... |+... .......++|+++.++....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 3689999988888877765 6666888887664 33332 22224667899999877766
Q ss_pred CCEEEEEEccCCCcccceEEEcccccceeEEEEe--cCCCcEEEEEEe----------------------CCCcEEEEEC
Q 001363 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDA 472 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~l~l~s~~----------------------~d~~i~vwd~ 472 (1092)
...++--|+.+.+.. . .+......+-...|. .|+. .++..- ..+.|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 678888899887532 2 233344444445553 4555 333221 1234666688
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCccEEEEEec---CCe-EEEEEcCCCCceE-EecC--CCCceEEEEEccCCCEEE
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGARV-DYDA--PGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~-i~vwd~~~~~~~~-~~~~--~~~~i~~~~~s~dg~~l~ 545 (1092)
.+|+....+. -...+..+.|+|... .+|+-|-. +.. -|+|-+++..... .+.. ....+..=-|.|||..+.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 8887654443 556777888877533 34444322 221 3667655433222 2221 222445556899999887
Q ss_pred EEec-CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----------------CcEEEEECC
Q 001363 546 SCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMN 608 (1092)
Q Consensus 546 ~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~ 608 (1092)
..+. .+..+..|.-+|+.+++....... .......-++|+++++-=+.| ..|++++++
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 6544 334466788899998876543332 234455567888877653322 246778888
Q ss_pred CCceEEEEeCC--------CCCCCCceEEEccCCCEEEEEeC-CCeEEEEE
Q 001363 609 KVQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE 650 (1092)
Q Consensus 609 ~~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~ 650 (1092)
.+......... .....-....|+|||++++..++ .|...||-
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 76654322211 00112356899999999887765 56655553
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.5e-05 Score=77.03 Aligned_cols=250 Identities=12% Similarity=0.099 Sum_probs=140.7
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
.+.|.+|...|..++|||..+=|+..++.+..|+|.|+++...+.. +..| ..+.+++|.-
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL 245 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence 4577889999999999998875789999999999999999877754 3334 7899999998
Q ss_pred CC-CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEE------ecCCCcEEEEEEeCCCcEEEEECCC--Cce
Q 001363 407 DG-SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIKVWDAVT--GSR 477 (1092)
Q Consensus 407 dg-~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~------s~d~~~l~l~s~~~d~~i~vwd~~~--~~~ 477 (1092)
|. .+|..|...|.|.|||+...+.......-.-...+|..++. .+-|. +++....+ +..|++.- +..
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence 65 56667778999999999865432211111112234444433 22343 34444333 45665432 111
Q ss_pred eEEEe-cCCcCeEEEeecccCCccEEEEEecCCe---EE---E-EEcCCCCceEE-ecCC-CC------ceEEEEEccCC
Q 001363 478 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK---IK---A-WLYDSLGARVD-YDAP-GL------GCTRMAYSANG 541 (1092)
Q Consensus 478 ~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~---i~---v-wd~~~~~~~~~-~~~~-~~------~i~~~~~s~dg 541 (1092)
...++ +..+...++...+..+ +.|++.-.+.+ ++ . -|...+..+.. -..+ +. .-..+.-.++.
T Consensus 322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 12111 1234445555544322 34444433211 00 0 01111111110 0000 00 01122224566
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 001363 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++++..+. ..+.+.+||+.+++.++++.-.. +|..++... ++.-++..-.|..++||..+
T Consensus 401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence 66665543 46779999999999999887643 666665432 33334444445668887654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-05 Score=85.91 Aligned_cols=188 Identities=12% Similarity=0.123 Sum_probs=129.9
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001363 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 923 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~ 923 (1092)
..++|++++ +++++-|+.+|.|++++... .. .+...|+.. ..+|.+++|||.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456788885 47999999999999999874 33 333446554 56899999999999999999888653332
Q ss_pred eeeecCCCCcCCCCCceEEEEccC-----CCEEEEEeCCcEEEEEcCCc-eeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001363 924 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~l~~s~d-----g~~la~~~d~~i~lwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
.-++ .++.+++++|| .+.+++|+...+.++.-.=. .........-.++|.++.| .|.++|=++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 2222 25889999998 45666654433777764311 1111123334789999998 477888887
Q ss_pred CCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 998 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 998 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.+| |+|||+.++..+..+.+....+. ....+..+.|.+ ...|+.| ...+|++..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 665 89999999999888775442222 234556678886 4566665 66788888887
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00021 Score=81.21 Aligned_cols=206 Identities=15% Similarity=0.170 Sum_probs=132.6
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceee-
Q 001363 850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT- 922 (1092)
Q Consensus 850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~s~Dg~-----I~iwd~~~~~~~~- 922 (1092)
++++ ++..+|.|+.+|.|.+.+-. -+.+..++++... |+.+-...+..+|++.+.|+. |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 67799999999999887643 3445777777766 555554445579999988765 8999998653333
Q ss_pred eeee---ecCC-CCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcC----CceeeeeeccCCCCCEEEEEEecCCCEE
Q 001363 923 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE----ELTCLKQWFPISSVPISQATFSCDCRMV 993 (1092)
Q Consensus 923 ~~~~---~~~~-~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~----~~~~~~~~~~~h~~~v~~l~fs~dg~~l 993 (1092)
..++ +... .......++.+++.|.+-+.+|+| .+|.|..+.-+ .|.... ....-..+|+.++|..|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD-YSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee-eeccCCCCceeeEEecCCcee
Confidence 3333 2211 111112468999999999999997 77888888532 111111 111237899999999999874
Q ss_pred EEEECCCcEEEEEcCCCce-EEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCccccC
Q 001363 994 FTSFVDGTLSIHEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus 994 ~t~~~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1070 (1092)
+.+..-..|.+|.+.+... .+... . ++ +..-|.++++.. ..|++++ +..|.+|+..+.++.|+..
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld------~--~G--~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLD------N--NG--ISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeec------c--CC--ccceeeecCCCC-ccEEEec-CceEEEEcCCCcceeeeec
Confidence 4344456799999984331 21122 1 12 333467787632 2355553 5578999999999888654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5e-05 Score=86.29 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=142.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 536 (1092)
.++.|+....+..+|+.+.+..+...-....|.-++. +++.+.+|...|+|.+-|.++.+.+.++..|.+.+. .
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--D 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--D 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeecccccee--e
Confidence 5788888888999999999888777655555776654 668999999999999999999999999999998885 4
Q ss_pred EccCCCEEEEEecCCC-----CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCC-
Q 001363 537 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 609 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~- 609 (1092)
|+-.|+.|++||.+.. .|..|.+||+++.+.+..+.-+. ++ .-+.|.|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence 5667999999987553 35678999999888776666544 22 45667776 35678888899999988432
Q ss_pred Cce-EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 610 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 610 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
+.+ ......+...+.+..++++++|+.++.|..+|.|.+|.-.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 111 1222222223458899999999999999999999999844
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0004 Score=78.93 Aligned_cols=202 Identities=11% Similarity=0.114 Sum_probs=136.3
Q ss_pred EEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCC-----cEEEEEcCCc----
Q 001363 808 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS---- 876 (1092)
Q Consensus 808 ~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~---- 876 (1092)
-++++.+..++.|+ +|.|.+.+- ..+.++.++.+... |+.+-... +..+|++.+.|+ .++||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888888887 788888774 34555777777766 44444443 557888887776 4899998643
Q ss_pred --eee--Eeecc-----ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC
Q 001363 877 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 877 --~~~--~~l~~-----h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
.++ .++.+ ...++.+++.|.+-+.+|.|-.+|.|..+.-+--..+..+..-...+. .+|+.+++..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 223 12222 346788999999999999999999998885432221111222222232 36999999999
Q ss_pred CCE-EEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEee
Q 001363 948 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 948 g~~-la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
++. +.++.-..|.+|.+....+.......|+....|..|++-...+++++ +..+.+|+.+.......|
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 988 44567788999999844433444666788999999887555355554 457999998855544334
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0039 Score=72.41 Aligned_cols=138 Identities=12% Similarity=0.110 Sum_probs=80.2
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCC------ceE--EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GCT--RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------~i~--~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
..++.++.++.+.-.|..+++.......... .+. .+++. ++..++.+.. ++.|+-+|..+|+.+-.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 3567777788888889888887766544322 000 11111 2245555543 567999999999998776
Q ss_pred eecccc--CCceE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCceEEEEeCCCCCC----------------
Q 001363 572 QGLQLQ--HNSVS-VVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLP---------------- 623 (1092)
Q Consensus 572 ~~~~~~--~~~v~-~~~~~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~---------------- 623 (1092)
...... ...+. ...+. +..++.++ .+|.+..+|..+|+.+..........
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 643300 00011 11122 24555554 36789999999999988775431100
Q ss_pred --CC-ceEEEccCCCEEEEEeCCC
Q 001363 624 --EN-PRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 624 --~v-~~v~~s~~~~~l~~~~~dg 644 (1092)
.+ ...++.+.+.++++++.++
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g 238 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNG 238 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCC
Confidence 01 1345555567777777665
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00032 Score=79.22 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=124.4
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.+.+.+++ ++.++.|+.+|.+++++.+.... +. + .|... ..+|.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------------~~-~---~~s~~------~~~Ge 84 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------------TN-F---DHSSS------ILEGE 84 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCccc------------------------cc-c---ccccc------ccCCc
Confidence 34444443 46688888999999987654310 00 0 02211 55899
Q ss_pred EEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC----CCCEEEEEeCCCcEEEEEcCCc--eeeEeeccccCC
Q 001363 816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKR 888 (1092)
Q Consensus 816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~ 888 (1092)
++++++ ||++.|-.+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-.=- +.-..+..-.++
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 999999 6999999998888777665 4578999999993 256888899888 777753321 111234556789
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcC
Q 001363 889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~ 965 (1092)
|.++.|. |+++|-++.+| |+|||+..+.... .++.+............+.|.++.+ |+.|...+|+|..+.
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 9999995 88999999888 9999999865433 2222222222112345677766655 566777788888877
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0008 Score=78.47 Aligned_cols=222 Identities=14% Similarity=0.085 Sum_probs=121.5
Q ss_pred CCeEEEEEcCCCCCEEEEEe------CCC--cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC-CcEEEEE
Q 001363 844 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD 914 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-g~I~iwd 914 (1092)
..+.+.++|| +++.+|... .|+ .+.+++.. +.......+. ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777776655 244 45555542 3332223332 37889999999988887543 2233332
Q ss_pred cCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEE---EEcCCceeee----eeccCCCCCEEEEEEe
Q 001363 915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTCLK----QWFPISSVPISQATFS 987 (1092)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~l---wd~~~~~~~~----~~~~~h~~~v~~l~fs 987 (1092)
-..........+..........+.|..+.|||||..+|...+++|++ -....|+... .+..+-...+.++.|.
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 21111000000100000001123699999999999999966788887 4444554111 1122224446889999
Q ss_pred cCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCcc
Q 001363 988 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus 988 ~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
.+++++ ++..++...+|.+.-.-..........+. .+ ..+++-.| ..+.++..+|.+.+=.-......|
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~-----~~--v~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W 574 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLS-----AP--VVAVAASP---STVYVTDARAVLQLPNSDSGDQYW 574 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCccccccCCCCcc-----Cc--eEEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence 999855 55555555566654332221111111111 11 24566665 356677777765555444455678
Q ss_pred ccCCCCCcccCCC
Q 001363 1068 AVLPPDEIVGDQP 1080 (1092)
Q Consensus 1068 ~~~~~~~~~~~~~ 1080 (1092)
...|+..-.+..|
T Consensus 575 ~ev~~l~g~~~~p 587 (591)
T PRK13616 575 REVPGLMGPRAAP 587 (591)
T ss_pred eECccccCCCccc
Confidence 8887776555444
|
|
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.5e-06 Score=65.73 Aligned_cols=53 Identities=34% Similarity=0.595 Sum_probs=42.7
Q ss_pred hHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCH
Q 001363 37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1092)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~ 90 (1092)
++..++++|+.|+|++|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 478899999999999999999887433222223 48999999999999988764
|
Alpha-helical motif of unknown function. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.033 Score=64.86 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=43.3
Q ss_pred CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccc
Q 001363 823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 885 (1092)
|.+.-+|+.+++..-+.............. .+.+++.++.+|.++.+|.++|+.+...+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 568889999998887765333222222222 3447777888999999999999999887643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.014 Score=66.71 Aligned_cols=252 Identities=14% Similarity=0.084 Sum_probs=137.7
Q ss_pred CceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.+...++||||++++.+-+..| ++++.|+.+|+.+.. .+ .. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence 3446789999997665555544 499999999976643 11 11 112239999999988
Q ss_pred EEEeCC-----------CEEEEEEccCCCcccceEEEcccccc--eeEEEEecCCCcEEEEEEeCC--CcEEEEECCCC-
Q 001363 412 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG- 475 (1092)
Q Consensus 412 as~~~d-----------~~i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~- 475 (1092)
+....+ ..|+.|++.++..-. ...+.+.... ...+..++|++++++.+.+.. ..+.+-|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 776432 247777877654321 1234443333 567889999996333333322 35778888775
Q ss_pred ---ceeEEEecCCcCeE-EEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccCCCEEE
Q 001363 476 ---SRTYSFEGHGAPVY-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 476 ---~~~~~~~~~~~~v~-~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
.....+......+. .+... ++.+++... ..+.|...++..... ...+..+...+.-..+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 23344433333333 33321 223443332 235676777777653 224444444333333444566666
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE--Ee--CCCcEEEEECCCCceEE
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s--~dg~i~iwd~~~~~~~~ 614 (1092)
.... .++...|++++...+.....+.... .+.|..+...++++.+.. .| .-++++.||+.+++...
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 5544 2457789999998445544444433 345666665666655543 22 34578888888877643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.012 Score=62.88 Aligned_cols=229 Identities=12% Similarity=0.063 Sum_probs=112.1
Q ss_pred EEECCCCCEEEEEeC---CCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001363 402 VVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 402 l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
=+|.+||+.|+.++. ...+.+-|+.+++..+ |.... ........+++++ .++-......|+--|+++.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 367889988887765 4468888888876443 33332 2233567788888 454444456888899999887
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEec----------------------CCeEEEEEcCCCCceEEecCCCCceEEE
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~----------------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 535 (1092)
...+......+-...+....|+..++..-. ...|.-.|+.+++....+. ....+..+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 666666666666666665666666554321 1234445666655444333 44567788
Q ss_pred EEccCCCE-EEEEecCCCCcee-EEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-----CCCcEEEEEC
Q 001363 536 AYSANGRR-LFSCGTSKEGESF-LVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWDM 607 (1092)
Q Consensus 536 ~~s~dg~~-l~~~~~~~~~~~~-i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----~dg~i~iwd~ 607 (1092)
.|+|.... |..|.. +..+.. -++|-+. .|...+.+..+. ....+..=.|.|||..+.--+ .+..|.-+|+
T Consensus 194 ~fsP~dp~li~fCHE-Gpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHE-GPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEETTEEEEEEEEE--S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred ccCCCCCCEEEEecc-CCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 99996554 444443 332221 2445433 233333333322 123455567999998776522 3456777888
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001363 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
.+++.......+ .....-.++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 887665433322 22345556788877654444
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0029 Score=69.97 Aligned_cols=244 Identities=13% Similarity=0.158 Sum_probs=131.6
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.|..+.|+++...++++...|.+.+|.+..++........ .-..+.+.+-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~----------------------------~~~~~~~~~~-- 52 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQP----------------------------PDLDYNFRRF-- 52 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------------S---
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCC----------------------------cccCcccccc--
Confidence 4788999999889999999999999998775432100000 0000000000
Q ss_pred EEEEEeCCeEEEEEcCC---------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe--ecc
Q 001363 816 YLFSASGGVISLYIVMT---------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG 884 (1092)
Q Consensus 816 ~l~~~sdg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~ 884 (1092)
...++.-.+-|+.. ......+....+.|++++.|. =-++|+|..+|.+.|.|++....+.. +..
T Consensus 53 ---~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 53 ---SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp ----GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred ---cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 00000111112111 122333444578999999984 45999999999999999987776544 222
Q ss_pred ------ccCCeEEEEEcC-----CC---CEEEEEeCCCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEE-EccC
Q 001363 885 ------HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQ-FHKD 947 (1092)
Q Consensus 885 ------h~~~V~~l~~sp-----dg---~~l~s~s~Dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~-~s~d 947 (1092)
....|+++.|+. |+ -.|+.|...|.+.+|.+-- +..-..........+. +.|..+. |+.+
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~ 204 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINAD 204 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECC
Confidence 334688888872 33 4688889999999998752 1111111111111111 2344443 4322
Q ss_pred ---------------------CCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEE-----ecCCCEEEEEECCCc
Q 001363 948 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATF-----SCDCRMVFTSFVDGT 1001 (1092)
Q Consensus 948 ---------------------g~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~f-----s~dg~~l~t~~~Dg~ 1001 (1092)
..+++++.+..++++...+.+...... ........+++ ...+..|++-..+|.
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~ 283 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS 283 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence 125666889999999999888776655 22223334455 236778888899999
Q ss_pred EEEEEcCCCceEEeecc
Q 001363 1002 LSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 1002 i~vwd~~~~~~~~~~~~ 1018 (1092)
|+++.+...+.+.....
T Consensus 284 i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 284 IRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp EEEEETTT--EEEEEE-
T ss_pred EEEEECCCchHhhcccC
Confidence 99999999999988874
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0049 Score=62.99 Aligned_cols=197 Identities=9% Similarity=0.094 Sum_probs=112.5
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+.|.+-.++++.++|.|+.+.|+|+....+.|.-.+. +|+.++... +.+ -+..-.|++..+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~ 75 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN 75 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence 5677777789999999997778999988899988886 477776533 333 357788999988
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccce-----EEEc---ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC---Cc
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQ-----LEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS 476 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~-----~~~~---~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~ 476 (1092)
+.++++--.++.+.++++......... ..+. .+...+-.++|.+.++. |+.+-...-..++.+.. +.
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence 888887767899999998543211111 1111 24456899999999884 44444455555655443 22
Q ss_pred eeEEE--------ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEcc
Q 001363 477 RTYSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA 539 (1092)
Q Consensus 477 ~~~~~--------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~ 539 (1092)
.+... ......+.++++++. .+++++....+..|..+| ..++....+.... .....++|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 22111 113345778888765 567888888888899998 4444443332222 2467899999
Q ss_pred CCCEEEEE
Q 001363 540 NGRRLFSC 547 (1092)
Q Consensus 540 dg~~l~~~ 547 (1092)
+|+..++.
T Consensus 232 ~G~LYIvs 239 (248)
T PF06977_consen 232 DGNLYIVS 239 (248)
T ss_dssp T--EEEEE
T ss_pred CCCEEEEc
Confidence 99766664
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.005 Score=68.08 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=80.0
Q ss_pred ceEEEEccC-CCEEEEE-----eCCc----EEEEEcCCce--eeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001363 939 ETHIQFHKD-QTRFLLV-----HETH----LAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus 939 v~~l~~s~d-g~~la~~-----~d~~----i~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
..++.||-. ...+.+. .+|. -.+|+....+ ++..........|.+++++|+...|+.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 467778763 3344331 2332 5677776553 33333345688999999999999999999999999999
Q ss_pred cCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1007 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
...+.....- ..+.|..++||| ++..+++|+..|.+.+||+.
T Consensus 288 ~~~~~t~~~k------------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 288 TTRGVTLLAK------------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCCeeeeee------------ecccceEEEEcC-CCcEEEEEcCCceEEEEEee
Confidence 9887444221 124566799999 58999999999999999974
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00094 Score=74.55 Aligned_cols=198 Identities=18% Similarity=0.148 Sum_probs=118.4
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCC---CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
....+.+..-...+..-+|+|+++.+....-.. ..+.++|+++++.....+ -.+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence 344455665566888899999998644442222 359999999988765432 223344
Q ss_pred EEEECCCCCEEEEEe-CCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--EEEEECCCC
Q 001363 401 RVVWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTG 475 (1092)
Q Consensus 401 ~l~~spdg~~las~~-~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~ 475 (1092)
..+|||||++||.+. .|| .|.+.|+.++... .+..-.+.-+.-.|+|||++ ++.+.+..|. |.+.|++.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~----~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP----RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcce----ecccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 578999999998774 444 4777788776522 23333333446789999996 3444455554 556676665
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecC-Ce--EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.. ..+......-. ....++||.+++..+.. |. |.+.|+.+... ..............+.++|+.+...+..
T Consensus 317 ~~-~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 317 QV-TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ce-eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 54 33322221111 23336688888777643 44 55556555543 2222222334456788899888876543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.006 Score=70.83 Aligned_cols=248 Identities=13% Similarity=0.107 Sum_probs=139.9
Q ss_pred EEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CCCEEEEEe---------CCC
Q 001363 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAY---------SKH 418 (1092)
Q Consensus 350 lasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~las~~---------~d~ 418 (1092)
+..++.++.|.-+|.++|+.+-.+... .+...-..+.-+| .+..+++++ .++
T Consensus 113 V~v~~~~g~v~AlD~~TG~~~W~~~~~-----------------~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g 175 (488)
T cd00216 113 VFFGTFDGRLVALDAETGKQVWKFGNN-----------------DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRG 175 (488)
T ss_pred EEEecCCCeEEEEECCCCCEeeeecCC-----------------CCcCcceEecCCCEEECCEEEEeccccccccCCCCc
Confidence 566778899999999999987543221 1100000011111 123444443 357
Q ss_pred EEEEEEccCCCcccceEEEcc----------------cc-cce-eEEEEecCCCcEEEEEEeCCC---------------
Q 001363 419 IVQLYAYHGGSDARQQLEIDA----------------HV-GNV-NDLAFSAPCKQISVITCGDDK--------------- 465 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~----------------h~-~~v-~~~~~s~d~~~l~l~s~~~d~--------------- 465 (1092)
.+.-.|..+|+.+-....... +. ..| ...++.+.+. .++.++.++
T Consensus 176 ~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 176 ALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred EEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCCC
Confidence 788889988875542211100 00 011 1234444455 456665454
Q ss_pred ---cEEEEECCCCceeEEEecCCcCeE------EEeecc--cCCc---cEEEEEecCCeEEEEEcCCCCceEEecCCCCc
Q 001363 466 ---TIKVWDAVTGSRTYSFEGHGAPVY------SLCPHA--KENI---HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG 531 (1092)
Q Consensus 466 ---~i~vwd~~~~~~~~~~~~~~~~v~------~i~~~~--~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 531 (1092)
.|.-.|.++|+.+..++.-..... ...+.. .-++ ..++.++.+|.+...|..+++.+.......
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-- 331 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-- 331 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence 799999999999987642111111 001100 0122 267888899999999999998877654321
Q ss_pred eEEEEEccCCCEEEEEecC--------------CCCceeEEEEeCCCCeEEEEEeeccccC-----CceEEEEEcCCCCE
Q 001363 532 CTRMAYSANGRRLFSCGTS--------------KEGESFLVEWNESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQ 592 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~ 592 (1092)
..++.+| ..++..... ...++.+.-.|..+|+.+-......... .+...-.....+..
T Consensus 332 -~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~ 408 (488)
T cd00216 332 -QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL 408 (488)
T ss_pred -cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCe
Confidence 1123334 333332110 1235678889999998876665431000 01111111124578
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 001363 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
+++++.||.++.+|..+|+.+...+....
T Consensus 409 v~~g~~dG~l~ald~~tG~~lW~~~~~~~ 437 (488)
T cd00216 409 VFAGAADGYFRAFDATTGKELWKFRTPSG 437 (488)
T ss_pred EEEECCCCeEEEEECCCCceeeEEECCCC
Confidence 89999999999999999999988876543
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0057 Score=68.39 Aligned_cols=195 Identities=14% Similarity=0.082 Sum_probs=120.6
Q ss_pred EcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCeEEEeecccCCccE-EEEEecCCeEEE
Q 001363 437 IDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF-IFSISVDGKIKA 513 (1092)
Q Consensus 437 ~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-l~s~~~dg~i~v 513 (1092)
+..-...+..-+|+|+++.+..++-...+ .+.++|+++++....+. ..+.-..-.| ++||+. +++...||...+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~f--spDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAF--SPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccC--CCCCCEEEEEECCCCCccE
Confidence 33344567778999999975444444343 59999999887655443 1122222345 445555 455667777554
Q ss_pred --EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001363 514 --WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 514 --wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
.|+....... +....+.-..-.|+|||+.++..+ ++.+.-.|++.+...+...+...... .. ..-.|+|||+
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~---~~-~~p~~SpdG~ 338 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGG---GN-SNPVWSPDGD 338 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCC---CC-cCccCCCCCC
Confidence 5666555333 333333334678999999999886 55667789999988776633332222 12 2667999999
Q ss_pred EEEEEeC-CCc--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001363 592 QILAAGD-DHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 592 ~l~~~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
+++..+. +|. |.+.|+.++.....+.... ....-.+.++++.+...+..
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 9988664 344 6667776666544444322 23456777888877765543
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.3e-05 Score=48.19 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhc
Q 001363 6 KDLVFLILQFLNEEGFTESAHMLERES 32 (1092)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es 32 (1092)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 578999999999999999999999997
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00063 Score=74.90 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=83.3
Q ss_pred CCCeeEEEEecC-CCEEEEEe-----CCe----EEEEEcCCceeeEE---ecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 001363 802 QEAVPCFALSKN-DAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTI 868 (1092)
Q Consensus 802 ~~~v~~~~~s~d-g~~l~~~s-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 868 (1092)
+....++.||.. ...+.+.. +|. -++|++...+..+. --.....+.+++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 344567778763 34444332 232 56777765543221 123667899999999 88999999999999
Q ss_pred EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001363 869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 919 (1092)
.+||...+... +..+.-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99999876322 22345567889999999999999999999999987643
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0058 Score=62.46 Aligned_cols=216 Identities=12% Similarity=0.104 Sum_probs=116.0
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccc-cCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 001363 837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDV 915 (1092)
Q Consensus 837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~ 915 (1092)
+.+.+-...+..++|.|+++.++++....+.|..++.+ |+.+.++.-. .+..-.|++..++.++++.-.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34555666799999999557788888888899888874 7877766532 356888999988887777667999999998
Q ss_pred CCCc--eeee--eeeecCCCCcCCCCCceEEEEccCCCEEEEEeC-CcEEEEEcCC---ceeeee-----e--ccCCCCC
Q 001363 916 DGWG--IQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAEE---LTCLKQ-----W--FPISSVP 980 (1092)
Q Consensus 916 ~~~~--~~~~--~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-~~i~lwd~~~---~~~~~~-----~--~~~h~~~ 980 (1092)
.... .... ..+..... ......+..++|.|.++.|.++.+ .-..||.+.. ...+.. + .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 4422 1111 11121111 111135899999998777777543 4466666653 111111 0 1113556
Q ss_pred EEEEEEecC-CCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001363 981 ISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 981 v~~l~fs~d-g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w 1058 (1092)
+++++|.|. |.+++.+.....|..+| ..|+.+..+....-... ....--.+--++++| +| .|...+.-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~g-l~~~~~QpEGIa~d~-~G-~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHG-LSKDIPQPEGIAFDP-DG-NLYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG--SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccC-cccccCCccEEEECC-CC-CEEEEcCCceEEEe
Confidence 888999885 45666666778898999 66777766653331100 001111245688998 45 45555566666665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.6e-05 Score=52.28 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001363 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1092)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~ 35 (1092)
.++++.++|+|||...||..|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0067 Score=67.10 Aligned_cols=254 Identities=13% Similarity=0.117 Sum_probs=133.9
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeE------Ee------------eeeeeeccccc------ceeeEee
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGACS------MLFKTAL 391 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~------~~------------~~~~~d~~~~~------~~~~~~~ 391 (1092)
.|+++.|+++.. -||+|...|.|.||.....+.-. .. .-.+-|+.... ......+
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588999999976 48889999999999875432221 00 12233443211 2233445
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcc------cccceeEEEEec-----CC-CcEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSA-----PC-KQISVI 459 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~-----d~-~~l~l~ 459 (1092)
+....++|++++.| |=-++|+|+.+|.+.|.|+.....+.. ..+.. ....|+++.|+- |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 666999999999999999976554432 22333 334688888862 22 224788
Q ss_pred EEeCCCcEEEEECC--C-Ccee----EEEecCCcCeEEEeecccCCc-------------------cEEEEEecCCeEEE
Q 001363 460 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA 513 (1092)
Q Consensus 460 s~~~d~~i~vwd~~--~-~~~~----~~~~~~~~~v~~i~~~~~~~~-------------------~~l~s~~~dg~i~v 513 (1092)
.|...|.+.+|.+. . +.-. .....+.++|..+......+| +-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 2221 112246677766653211111 22455566788999
Q ss_pred EEcCCCCceEEecCCCCceEEEEEc-----cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-cCCceEEEEEc
Q 001363 514 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD 587 (1092)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s-----~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~ 587 (1092)
+...+.+..............+++- ..+..|++... ++.++++.+..-+.+..+.-... ....+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888777666554332334445553 24555666654 66799999988887776665320 01223344556
Q ss_pred CCCCEEEEE
Q 001363 588 TAKDQILAA 596 (1092)
Q Consensus 588 ~~~~~l~~~ 596 (1092)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666544443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.023 Score=65.01 Aligned_cols=249 Identities=13% Similarity=0.127 Sum_probs=127.5
Q ss_pred cEEEEEECCCCCEEEEE-eCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE-eC--------
Q 001363 398 SVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GD-------- 463 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~-------- 463 (1092)
.+...++||||+++|.+ +.. ..++++|+++|+.+.. .+... ....+.|.+|++. ++.+. ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44568899999999977 333 3699999999864432 11111 1223999999985 33333 22
Q ss_pred -CCcEEEEECCCCcee--EEEecCCcCeEEEeecccCCccEEEEEecCC----eEEEEEcCCC----CceEEecCCCCce
Q 001363 464 -DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSL----GARVDYDAPGLGC 532 (1092)
Q Consensus 464 -d~~i~vwd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg----~i~vwd~~~~----~~~~~~~~~~~~i 532 (1092)
...|+.|.+.++..- ..+.........+....+.|+++++..+..+ .+.+.++... .....+......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 224788888877443 4444444443222333356777766544332 3666677664 2223333233333
Q ss_pred EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE---EEEEeeccccCCceEEEEEcCCCCEEEEE-eCCC--cEEEEE
Q 001363 533 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDH--VIKIWD 606 (1092)
Q Consensus 533 ~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg--~i~iwd 606 (1092)
....-.. +..++..+..+...+.|...++..... ...+..+. ....+..+.. .+.+|+.. ..++ .|++++
T Consensus 280 ~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 280 EYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVSL--FKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEEE--ETTEEEEEEEETTEEEEEEEE
T ss_pred EEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEEE--ECCEEEEEEEECCccEEEEEE
Confidence 3322223 443333333444567788888877652 22344333 0113444443 44555553 3343 578899
Q ss_pred CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCce
Q 001363 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 656 (1092)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~~ 656 (1092)
+..+.....+..... ..|..+...++++.+..... -+++..||+.+++.
T Consensus 356 ~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 356 LDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 984555555554432 22344444455554443322 26777888887754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0063 Score=68.24 Aligned_cols=223 Identities=10% Similarity=0.063 Sum_probs=118.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+......+..+.++|+|++++++ .+|.-.|+..... +. ...+.-...+|.+.++ +++-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 44455668899999999999995 5666777773321 21 1234556788999665 66666688899974
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
--+.+....+.. ...+..+-. |.+|...+. +.|.+||+.+++.+..+... +|..+.|+++|.+++..+.
T Consensus 96 n~~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-- 164 (443)
T PF04053_consen 96 NFKNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-- 164 (443)
T ss_dssp TTEE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred cCccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence 223333233332 112333321 455555544 48999999999888877754 4889999999999998873
Q ss_pred CCceeEEEEeCCCC-----------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEeC
Q 001363 552 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDA 618 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~ 618 (1092)
..+++++.... .....+.... ..|.+.+|..+ .++-.+.. .++.+ -.|+. +..+.
T Consensus 165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~ld- 232 (443)
T PF04053_consen 165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHLD- 232 (443)
T ss_dssp ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE-S-
T ss_pred ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEcC-
Confidence 23666654332 0222222212 57888888766 44444444 66653 33433 33332
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 619 GGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
..+.-+.+.++.+.+.....++.+..+.+..
T Consensus 233 ----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 ----KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ----S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ----CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2356677788778888888888888887763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.014 Score=65.35 Aligned_cols=206 Identities=13% Similarity=0.159 Sum_probs=145.2
Q ss_pred eeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC---CCcEEEEEcCCceee
Q 001363 805 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEVI 879 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~v~iwd~~~~~~~ 879 (1092)
...+++++++..+.... ++.+.+.|..+.+......... ....+++++ +++.+.++.. ++++.+.|..+++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45678888888555554 5889999988777766654322 667899999 6655555554 689999999999888
Q ss_pred EeeccccCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eC
Q 001363 880 SKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE 956 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d 956 (1092)
.....-..+ ..++++|+|+.+..+ ..++.|.+.|........ ...............++++|+|.++.+. .+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 775544344 889999999965554 478999999987744221 1111111111245789999999977763 22
Q ss_pred --CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-CcEEEEEcCCCceEEeec
Q 001363 957 --THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 957 --~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-g~i~vwd~~~~~~~~~~~ 1017 (1092)
+.+...|..++.........-......+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 5899999988887765222211145678999999998887544 889999999988876665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.01 Score=66.56 Aligned_cols=218 Identities=17% Similarity=0.185 Sum_probs=119.2
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe
Q 001363 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 881 (1092)
...+..+.++|+|++++++++|...|+.....+.... +.....+|.+ +++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 3446789999999999999999999999655554332 3345788988 554 66666688999963333333233
Q ss_pred eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEE
Q 001363 882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI 961 (1092)
Q Consensus 882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~l 961 (1092)
+... ..+..+-. |.+|...+.+ .|.+||+++++ .++...-. .|..+.||++|.++|...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v~-----~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDVS-----AVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEecC-----CCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 22444433 8888877665 79999999865 33333321 378999999999999988888888
Q ss_pred EEcCCc-----------eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceE--EeeccccccCCCCcc
Q 001363 962 YEAEEL-----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ--CRILSTAYLRPTTSC 1028 (1092)
Q Consensus 962 wd~~~~-----------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~ 1028 (1092)
++.... ..+.. ...-...|.+.+|-.| -++.|. .. .++. +.+|+.- +.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~-~~E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld----------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFEL-IHEISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD----------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEE-EEEE-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-----------
T ss_pred EEecchhcccccccCchhceEE-EEEecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC-----------
Confidence 876533 01221 1111568889999877 444444 33 7776 4445432 2222
Q ss_pred ccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1029 ~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.+++. +.+.|. .+.+.....|+.|..+.+.
T Consensus 233 ~~~yl--lgy~~~-~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 233 KPLYL--LGYLPK-ENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp S--EE--EEEETT-TTEEEEE-TT--EEEEE--
T ss_pred CceEE--EEEEcc-CCEEEEEECCCCEEEEEEC
Confidence 22342 344442 4688888899988888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.03 Score=63.03 Aligned_cols=199 Identities=16% Similarity=0.156 Sum_probs=109.6
Q ss_pred EEEecCCCEEEEEeCC------------eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001363 808 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 808 ~~~s~dg~~l~~~sdg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
++.+|.|..+|...+. .|+||+.. |+.+..+.-..+.+.++.|+. +. .|++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4556666666666544 58899875 556665543348999999997 44 555677899999999873
Q ss_pred ce------eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee-eeeee-ecCCCCc--CCCCCceE-EEE
Q 001363 876 SE------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSL-QTPDGVM--TLAPSETH-IQF 944 (1092)
Q Consensus 876 ~~------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~-~~~~~-~~~~~~~--~~~~~v~~-l~~ 944 (1092)
.. .+....-....+....+..+|-.+.+ .++.+.+- ...... ..+.+ ..+.... ........ ..+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence 22 11111112222333344445533333 34433333 221111 00111 1111000 00001111 335
Q ss_pred ccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 945 HKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 945 s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
+.+....+. ..++.+.+.+....+. . ...+++..++.||+|++||.-..+|.+.+.+.+-.+..+.+..
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 555554444 4555666454332211 1 1246899999999999999999999999998877777776663
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.015 Score=58.05 Aligned_cols=232 Identities=15% Similarity=0.082 Sum_probs=137.6
Q ss_pred EEEEecCCC-EEEEEe-CCe-EEEEEcCCceeeEEecCCCCC--eEEEEEcCCCCCEEEEEeCC-----CcEEEEEcCCc
Q 001363 807 CFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS 876 (1092)
Q Consensus 807 ~~~~s~dg~-~l~~~s-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~ 876 (1092)
.++++|.-. -++.+- -|+ ..++|..+.+.+.++....+. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 567777643 344444 355 778999888777665443321 22346999 89988865443 68999999864
Q ss_pred -eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEE--------------------EEcCCCceeeeeeeecCCCCcCC
Q 001363 877 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV--------------------WDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 877 -~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i--------------------wd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
+.+..+..|.-.-..+.+.+||+.|+.+. |-|.. -|-.++.......+.....+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~--- 225 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ--- 225 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence 56778888888888999999999998763 32333 33233322211111111111
Q ss_pred CCCceEEEEccCCCEEEEE-e-----CCcEEEEEcCCceeeeeecc------CCCCCEEEEEEecCCCEEEEEE-CCCcE
Q 001363 936 APSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDGTL 1002 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~-~-----d~~i~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~-~Dg~i 1002 (1092)
..|..++.-+||+.++.+ . |--..+=-...++.+.-+-. .-...|-+++..-+..+++..+ ..++.
T Consensus 226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 258889999999887763 1 11111111122222221110 1144566777766555555444 55678
Q ss_pred EEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1003 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1003 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
.+||..+|.++....... . .-++.. ..-|++.+.+|.++++.-
T Consensus 305 vi~da~tG~vv~~a~l~d----a--------aGva~~---~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 305 VIWDAATGAVVSEAALPD----A--------AGVAAA---KGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEEEcCCCcEEecccccc----c--------ccceec---cCceEEecCCceEEeccc
Confidence 899999999884443111 1 112222 356888889999998854
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.09 Score=61.30 Aligned_cols=197 Identities=16% Similarity=0.085 Sum_probs=115.4
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEccccc--ce-------eEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NV-------NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v-------~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
+..|++++.++.|.-.|..+|+.+-+.. ...... .+ ..+++. ++ .++.++.|+.+...|.++|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~-~~~~~~~~~~~~~~~~~rg~av~-~~---~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYD-PKLPDDVIPVMCCDVVNRGVALY-DG---KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEec-CCCCcccccccccccccccceEE-CC---EEEEEcCCCEEEEEECCCCCEE
Confidence 4566666677778888888886543221 111100 00 012222 23 3667788999999999999998
Q ss_pred EEEecC--Cc--CeEE-EeecccCCccEEEEEe------cCCeEEEEEcCCCCceEEecCCCC-----------------
Q 001363 479 YSFEGH--GA--PVYS-LCPHAKENIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGL----------------- 530 (1092)
Q Consensus 479 ~~~~~~--~~--~v~~-i~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~----------------- 530 (1092)
...... .. .+.+ -.+ . ++ .++.+. .+|.|..+|.++++.+..+.....
T Consensus 144 W~~~~~~~~~~~~~tssP~v--~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~ 219 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLV--V-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG 219 (527)
T ss_pred eecccccccccccccCCcEE--E-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence 766421 11 1111 011 1 33 444443 268899999988877665332110
Q ss_pred --------------ce-EEEEEccCCCEEEEEecC--------CCCc----eeEEEEeCCCCeEEEEEeeccc--c----
Q 001363 531 --------------GC-TRMAYSANGRRLFSCGTS--------KEGE----SFLVEWNESEGAIKRTYQGLQL--Q---- 577 (1092)
Q Consensus 531 --------------~i-~~~~~s~dg~~l~~~~~~--------~~~~----~~i~iwd~~~~~~~~~~~~~~~--~---- 577 (1092)
.+ ..+++.+...+++.+..+ +.++ ..|.-.|++||+..-.++.... .
T Consensus 220 ~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 220 AKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred cCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC
Confidence 11 134666766677666532 1122 3688889999999877765330 0
Q ss_pred CCceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceE
Q 001363 578 HNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~---~l~~~s~dg~i~iwd~~~~~~~ 613 (1092)
.....-+.+..+|+ .++.++.+|.+++.|..+|+.+
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 01122233334665 6778999999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0004 Score=77.32 Aligned_cols=208 Identities=16% Similarity=0.096 Sum_probs=127.3
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001363 801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
+...+.--+++..+++++.|++ |.+++|+-..++....-. +..+.+..+.+|+ +..++|.|+..|.|.++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 4556666678889999999985 999999987776543332 3445566777888 888999999999999998876432
Q ss_pred -----eEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEE
Q 001363 879 -----ISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1092)
Q Consensus 879 -----~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 952 (1092)
+..+. .|...|++++|++|+..+.+|...|.|..-.++....... ..+.... ....|..+.... .+|+
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~-~~q~il~---~ds~IVQlD~~q--~~LL 184 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLS-KSQEILS---EDSEIVQLDYLQ--SYLL 184 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcc-ccceeec---cCcceEEeeccc--ceeh
Confidence 12222 3788999999999999999999999999988887211110 1111111 112355554433 3333
Q ss_pred EEeCCcEEEEEcCCce--eeeeeccCCCCCEEEEEEecC----CCEEEEEECCCcEEEEEcC-CCceEEeec
Q 001363 953 LVHETHLAIYEAEELT--CLKQWFPISSVPISQATFSCD----CRMVFTSFVDGTLSIHEAS-NLEVQCRIL 1017 (1092)
Q Consensus 953 ~~~d~~i~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~d----g~~l~t~~~Dg~i~vwd~~-~~~~~~~~~ 1017 (1092)
++.--.-.+++++... .+.... ..+-.-...+|-|. .+-.+.++.-| .|+|.++ .|++..+..
T Consensus 185 VStl~r~~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thq 254 (726)
T KOG3621|consen 185 VSTLTRCILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQ 254 (726)
T ss_pred HhhhhhhheeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeee
Confidence 3322333444444332 121100 00111345566554 33445566665 6999876 456655443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.056 Score=60.88 Aligned_cols=230 Identities=12% Similarity=0.079 Sum_probs=111.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc--c-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE-C
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--A-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD-A 472 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd-~ 472 (1092)
+.|.++.|+.+.+ |++...||.++++|+..... + .......-....+.+..+..+|- .++++ ++.+.+-+ .
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 7999999998654 45566999999999874320 0 00001111122233334444453 33433 34444433 2
Q ss_pred CCCceeEEE---ecCCc------CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001363 473 VTGSRTYSF---EGHGA------PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 473 ~~~~~~~~~---~~~~~------~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
......+.+ ..... ....+ .....+....+....++.+.+.+-..... ....+++..+++||+|++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF 230 (410)
T ss_pred cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence 211111111 11000 00000 01122334445555555555443222111 112458999999999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
++.... ++.+.+....-.+....+.... ......+.|..+...++.- ...+.+.....
T Consensus 231 iAl~t~----~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~-------------- 288 (410)
T PF04841_consen 231 IALFTD----SGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVGPDG-------------- 288 (410)
T ss_pred EEEEEC----CCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEECCCC--------------
Confidence 998865 4557777765555555554432 2455666666543222221 22233332111
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
..+.|.-++..++..-.|| ++|.....-..++...
T Consensus 289 --~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 289 --DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP 323 (410)
T ss_pred --CceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence 2244444454444444455 7777666555555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0037 Score=73.00 Aligned_cols=183 Identities=9% Similarity=0.067 Sum_probs=105.2
Q ss_pred CCeeEEEEecCCCEEEEEe-------CC--eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC--------
Q 001363 803 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 865 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-------- 865 (1092)
..+.+.++||||+.++... +. .+.+++.. +.. ..+.. ....+.-.|+| |+..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3567899999999988765 33 35555642 222 33322 22478899999 77777766432
Q ss_pred ----CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeecCCCCcCCCCC
Q 001363 866 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 938 (1092)
Q Consensus 866 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1092)
+.+.+.++..++... ...+.|..+.|||||+.+|... ++.|.+ -....|+...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2356799999999999998876 477777 444444422211211211111 23
Q ss_pred ceEEEEccCCCEEEEEeCCc--EEEEEcCCceeeeeeccC--CCCCEEEEEEecCCCEEEEEECCC
Q 001363 939 ETHIQFHKDQTRFLLVHETH--LAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 939 v~~l~~s~dg~~la~~~d~~--i~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
+.++.|..++.+++...++. +...++. |..... ..+ ...++..++-+++ .|+....+|
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecC-Cccccc-cCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 57899999999765544443 4444444 222221 122 2567777777653 355555566
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.2 Score=56.10 Aligned_cols=251 Identities=13% Similarity=0.119 Sum_probs=161.9
Q ss_pred cEEEEEECCCCCEEEEEeCCC-EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001363 398 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
....++..|+|..+....... .+..-+..... ... ....-...-..++.++++.. .++....++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-VTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccce-eee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 556688889886665553222 34444444211 111 11111133456788888886 55666667899999988888
Q ss_pred eeEEEecCCcCeEEEeecccCCccEEEEEec---CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001363 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
..+....-. ....+++.+ ++..+..+.. ++++.+.|-.+............+ ..++++|+|..++.+. ..
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN---SD 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe---cC
Confidence 777664333 444566644 5555555444 688888888877776664333334 8899999999888776 24
Q ss_pred ceeEEEEeCCCCeEEEEEeec--cccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001363 554 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
++.|.+.|..+....+ -... .........+.++|+++.+++.... +.+...|..++............ ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 7789999977766653 1100 1112345678899999987775433 58999999998877763222222 35678
Q ss_pred EEccCCCEEEEEeCC-CeEEEEECCCCceeeecc
Q 001363 629 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG 661 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~ 661 (1092)
.++|+|+.+.+.... +.+.+.|..+........
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 999999999888554 888888888776555443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.064 Score=53.68 Aligned_cols=256 Identities=16% Similarity=0.169 Sum_probs=139.2
Q ss_pred ceEEEEEcCCCCE-EEEEeCCCc-EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECC
Q 001363 580 SVSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETP 652 (1092)
Q Consensus 580 ~v~~~~~~~~~~~-l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~ 652 (1092)
.-..++++|.... ++.+-.-|+ ..++|....+...++.........-.-+|||||.+|...-+| |.|-|||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 3445778887544 344555554 578999998887777654332223346799999999876544 677788776
Q ss_pred CC-ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCc
Q 001363 653 ES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 731 (1092)
Q Consensus 653 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~ 731 (1092)
.+ +.+..+..
T Consensus 149 ~~fqrvgE~~t--------------------------------------------------------------------- 159 (366)
T COG3490 149 EGFQRVGEFST--------------------------------------------------------------------- 159 (366)
T ss_pred cccceeccccc---------------------------------------------------------------------
Confidence 43 11111111
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEE-eecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 732 VKANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
|.-....+.+.+||+.++.+.. -|..- ++...+...+ .-...+.+.+..+|..+....++..-+...+..++.
T Consensus 160 -~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld---sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~ 233 (366)
T COG3490 160 -HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD---SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI 233 (366)
T ss_pred -CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh---hcCccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence 2222334566677775554432 12221 1111110000 001123345556666565656654446778899999
Q ss_pred ecCCCEEEEEe-CC----e-EEEEEcCCceeeEEecCC-------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001363 811 SKNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 811 s~dg~~l~~~s-dg----~-i~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
.+||..++.+- .| . --+=-...++.+.-+.-. ...|-+++.+.+++-..+|.-..+...+||..+|.
T Consensus 234 g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 234 GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 99998877663 11 1 111112234444333322 24677888887455555555555678899999998
Q ss_pred eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 878 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd 914 (1092)
++..-.-- ....++ +...-++..+.+|.+.++.
T Consensus 314 vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 314 VVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEeccccc--ccccce--eccCceEEecCCceEEecc
Confidence 76543211 111122 2344455566778787773
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0083 Score=70.93 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=102.9
Q ss_pred CCCEEEEE-eCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCC-------CEEEEEeCCCcEEEEEcCCCceeeeee
Q 001363 855 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDAL-------NILVSSGGDAQIFVWDVDGWGIQTCRS 925 (1092)
Q Consensus 855 d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg-------~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 925 (1092)
+.++|+.- .....|+-.|+..|+.+..+..|... |..+ .|+. ..-+.|=.+..+..||..-.. .++
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 55555543 34578999999999999999987754 5544 4432 233446667779999987532 112
Q ss_pred eecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 001363 926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
+.............++++-+.+|.+.+.+.+|.|++||- .|+.-.+.+++-+.+|.+|..+.||+||++.+ +..+.++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 221111112223578888888998877789999999995 45555666777789999999999999998665 6678888
Q ss_pred EcC
Q 001363 1006 EAS 1008 (1092)
Q Consensus 1006 d~~ 1008 (1092)
++.
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.13 Score=55.05 Aligned_cols=231 Identities=11% Similarity=0.125 Sum_probs=130.9
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE----
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---- 481 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---- 481 (1092)
..++.|+.|+.+| +.+++......... . .+...|..+...++-+ .++.-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3578999999999 89999933222221 1 2333499999999887 344443 599999998754433311
Q ss_pred ----------ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC-----CceEEecCCCCceEEEEEccCCCEEEE
Q 001363 482 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 482 ----------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
......+...+......+...+.....++|.+|.+... ....++... ..+..++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 11223344444112233344455555669998888763 222333333 567788888 556666
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccc---------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--E
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T 615 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~ 615 (1092)
+.. ....+.|+.++.....+..... ...++..+.. +++.++++- +..-.+.|. .|+... .
T Consensus 154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 653 2378889887776554432210 0123333333 345555543 222233343 444332 3
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 001363 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
+.-.. ....+++. ..++++.+. +.|.||++.+++.++.+..
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 33222 24556653 457776665 5699999999988887764
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00012 Score=80.27 Aligned_cols=203 Identities=13% Similarity=0.103 Sum_probs=129.4
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCC
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
.+.+++.....+..+++.|..+|.|-+-.++..... .....+...+++++|++ |.+.|+++-..-+.+..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 344555444445567888999999998877654432 33445566889999988 566777776555567789999998
Q ss_pred CC--eEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCCCceEEEcc-CCCEE
Q 001363 564 EG--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTLL 637 (1092)
Q Consensus 564 ~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l 637 (1092)
++ .+.. .+.+. ......+++|..+.+.+++|.....+.++|++- ......+. +..+..+..+| .++++
T Consensus 138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence 87 2221 22221 124556888988889999999988999999872 22222221 12356778888 77777
Q ss_pred EEEeCCCeEEEEECC-CC-ceeeeccccc----CceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001363 638 AVIANENRIKILETP-ES-NSVDAAGVLS----DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~-~~-~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
++-. ||.|.+||.. .- .++..+.... ..+..++++|..+ |...+.....++|+
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------------glla~l~RdS~tIr 270 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------------GLLAVLSRDSITIR 270 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------------chhhhhccCcceEE
Confidence 7665 8999999943 21 2222222222 2478888887643 33333334456788
Q ss_pred eeccc
Q 001363 712 VEKPL 716 (1092)
Q Consensus 712 lw~~~ 716 (1092)
++++.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 88754
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.15 Score=54.60 Aligned_cols=228 Identities=14% Similarity=0.074 Sum_probs=128.6
Q ss_pred CCceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Q 001363 345 VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 423 (1092)
Q Consensus 345 dg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iw 423 (1092)
.++ .|+.|+.+| +.+++... ...... .+..+|..+...|+-+.|++-+ |+.+.++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence 345 477888877 99999832 222211 1334499999999888777764 4889999
Q ss_pred EccCCCcccceEE-----------EcccccceeEEE--EecCCCcEEEEEEeCCCcEEEEECCCC-----ceeEEEecCC
Q 001363 424 AYHGGSDARQQLE-----------IDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG 485 (1092)
Q Consensus 424 d~~~~~~~~~~~~-----------~~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~ 485 (1092)
++..-........ -......+...+ -...+.. .|+.+ ..+.|.+|.+... +..+++. ..
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEE-ECCEEEEEEEECCcccccceeEEEE-cC
Confidence 9876443321100 001222344444 1123332 44444 3558888877653 3455554 44
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC------------CceEEEEEccCCCEEEEEecCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------------LGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
..+.+++|. +..++.|..+ ...+.|+.++.......... .++..+. -+++.+|++..
T Consensus 139 ~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~~----- 207 (275)
T PF00780_consen 139 DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCYD----- 207 (275)
T ss_pred CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEec-----
Confidence 778888885 2456666644 46778888665544332111 1222222 34456665532
Q ss_pred ceeEEEEeCCCCeEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 554 ESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
. +-++=-..|+..+ .+.- . ..+..+++. ..++++.+. +.|.||++.++++++.+..+
T Consensus 208 -~-~g~fv~~~G~~~r~~~i~W-~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 -N-IGVFVNKNGEPSRKSTIQW-S---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred -c-eEEEEcCCCCcCcccEEEc-C---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 1 3333233454443 2221 1 344555553 357777666 45999999999999998754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.69 Score=55.99 Aligned_cols=205 Identities=13% Similarity=0.145 Sum_probs=120.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcC--------eEEEeeccc--------------CCccEEEEEecCCeEEEE
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHAK--------------ENIHFIFSISVDGKIKAW 514 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~i~~~~~--------------~~~~~l~s~~~dg~i~vw 514 (1092)
.++.++.++.|.-.|.++|+.+.++...... ...+++... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777888888899999888776532211 112222211 133478889999999999
Q ss_pred EcCCCCceEEecCCCC------------ceEEEEEcc--CCCEEEEEecCCC------CceeEEEEeCCCCeEEEEEeec
Q 001363 515 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 515 d~~~~~~~~~~~~~~~------------~i~~~~~s~--dg~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
|.++++....+..... ....+.-+| .+..++.++...+ ..+.|+-+|..+|+.+-.+..-
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9998888765532111 000111112 1334555543222 2678999999999988776531
Q ss_pred cc--------------cCCce-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceEEEEeCCCC
Q 001363 575 QL--------------QHNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 575 ~~--------------~~~~v-~~~~~~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
.. ....+ ...++.++...++.+. ..+.|.-.|.++|+....++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 10 00011 2345555555555422 224566778889988877754211
Q ss_pred C-------CCCceEEEcc-CCC---EEEEEeCCCeEEEEECCCCceeeecc
Q 001363 622 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 622 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
. ....-+.+.. +|+ .++.++.+|.+.++|..+++.+....
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 0 0111122322 553 78999999999999999998776544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.071 Score=56.79 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=115.1
Q ss_pred EEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec--
Q 001363 808 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-- 883 (1092)
Q Consensus 808 ~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-- 883 (1092)
..|.++...|.... .+.|.-|+..+++. ..+..+......+.+.. ++ .|+++. . -+.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~-~g-~Lv~~~-~-g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDA-GG-RLIACE-H-GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecC-CC-eEEEEc-c-ccEEEeccCCceeEEeccc
Confidence 35667777666665 68899999876643 23332322233334443 34 444332 3 36677776655422221
Q ss_pred --c-ccCCeEEEEEcCCCCEEEEEeC-----C----CcEEEEEcC-CCceeeeeeeecCCCCcCCCCCceEEEEccCCCE
Q 001363 884 --G-HSKRVTGLVFSDALNILVSSGG-----D----AQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 884 --~-h~~~V~~l~~spdg~~l~s~s~-----D----g~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
+ -......+...|+|.+.++... . ..=.||.+. .+. ..+....+.. .-..++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~~---~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDLT---IPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcEE---ecCceEECCCCCE
Confidence 1 1234556788899988876544 0 112455555 222 1122222111 2467999999988
Q ss_pred EEEE--eCCcEEEEEcCC--ce----eeeeeccCCCCCEEEEEEecCCCEEEEEECCC-cEEEEEcCCCceEEeecccc
Q 001363 951 FLLV--HETHLAIYEAEE--LT----CLKQWFPISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 951 la~~--~d~~i~lwd~~~--~~----~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg-~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
+..+ ..+.|.-|++.. +. ........+.+....++...+|.+.+++..+| .|.+|+.+ |+++..+....
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence 7774 447788887752 21 11122223457777888888998876554444 89999999 99998887443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.061 Score=57.26 Aligned_cols=223 Identities=15% Similarity=0.090 Sum_probs=135.0
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
-.|.|+...++.+--..+.|.-|+..+|+... +. +...+.++..-.++..|+++. .+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~g- 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-HG- 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-cc-
Confidence 45778887777777778999999998775442 11 333445555444555555543 33
Q ss_pred EEEEEccCCCcccceEEEc-c-cccceeEEEEecCCCcEEEEEEeCC----------CcEEEEECC-CCceeEEEecCCc
Q 001363 420 VQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGDD----------KTIKVWDAV-TGSRTYSFEGHGA 486 (1092)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~d~~~l~l~s~~~d----------~~i~vwd~~-~~~~~~~~~~~~~ 486 (1092)
+.+++.+++.......... + -....+.+...|+|. +.+ +... ..-.+|-+. .+..++.+..+-.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~ 163 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT 163 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence 6777876655422221111 1 124567888999998 333 3322 112344444 5666666666666
Q ss_pred CeEEEeecccCCccEEEEE-ecCCeEEEEEcCC-----CCc--eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 487 PVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDS-----LGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~-~~dg~i~vwd~~~-----~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
.-+.++|+| |++.++.+ +..+.|.-|++.. ... ........+..-.++...+|.+-+++... ...|.
T Consensus 164 ~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v~ 238 (307)
T COG3386 164 IPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRVV 238 (307)
T ss_pred ecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceEE
Confidence 678899965 55555555 4458888887763 111 12233334556678888888877644321 23699
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEe
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 597 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s 597 (1092)
.|+.. |+.+..+.... ..+.+++|. |+.+.|++.+
T Consensus 239 ~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEe
Confidence 99998 99988888775 566777774 4556665554
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=9.1e-05 Score=81.03 Aligned_cols=203 Identities=12% Similarity=0.172 Sum_probs=127.6
Q ss_pred CCCceEEeecCCCc-eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCCEE
Q 001363 334 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1092)
Q Consensus 334 ~~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l 411 (1092)
+..+.|++++-+.+ -++++|..+|.|.+-.+....-. ...+..+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 44788888765543 58999999999998876543211 0112557888999999999 77788
Q ss_pred EEEe----CCCEEEEEEccCC--CcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEec
Q 001363 412 GVAY----SKHIVQLYAYHGG--SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1092)
Q Consensus 412 as~~----~d~~i~iwd~~~~--~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~ 483 (1092)
|.|- .|..+.|||+.++ ...... .+. +......+++|..|.+ ++.+|.....+.++|++..- ....+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 8873 3567999999987 222111 122 2334566889988877 78888888899999976321 11111
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEE-cCCCCceEE-ecCC----CCceEEEEEccCCCE-EEEEecCCCCcee
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARVD-YDAP----GLGCTRMAYSANGRR-LFSCGTSKEGESF 556 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~-~~~~----~~~i~~~~~s~dg~~-l~~~~~~~~~~~~ 556 (1092)
.+..+..+.+.|- .+.++++-. ||.|-+|| ...-+.... +... ...+..++|.|-..- ++++.. ..++
T Consensus 194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~t 268 (783)
T KOG1008|consen 194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSIT 268 (783)
T ss_pred hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---Ccce
Confidence 2233444455442 224665554 99999999 433332221 1111 124788999996543 444432 2677
Q ss_pred EEEEeCC
Q 001363 557 LVEWNES 563 (1092)
Q Consensus 557 i~iwd~~ 563 (1092)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 8998875
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.025 Score=61.98 Aligned_cols=214 Identities=11% Similarity=0.118 Sum_probs=116.8
Q ss_pred ccccCCCCCceeeecCCCCCCCCCeeEEEEecC----CCEEEEEe----------C-CeEEEEEcCCc----eeeEEe--
Q 001363 781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILTI-- 839 (1092)
Q Consensus 781 ~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d----g~~l~~~s----------d-g~i~iwd~~~~----~~~~~~-- 839 (1092)
++.|+.+...+....+...++...+..+.+..+ ..++++|. . |.+.++++... ..+..+
T Consensus 5 ~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~ 84 (321)
T PF03178_consen 5 RLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS 84 (321)
T ss_dssp EEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE
T ss_pred EEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE
Confidence 344455555455555543222222333344432 56777774 1 77999999884 122211
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce-eeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
....++|++++--. ++ |+++. .+.|.+|++...+ ....-.- ....++++.. .+++++.|...+.+.++.++.
T Consensus 85 ~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 85 TEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEET
T ss_pred EeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEc
Confidence 22467888888763 44 44444 4789999998877 4333221 2224555554 466999999888899886664
Q ss_pred CceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCC-------ce-eeeeeccCC-CCCEEEE---
Q 001363 918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA--- 984 (1092)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~-------~~-~~~~~~~~h-~~~v~~l--- 984 (1092)
.... ...+..-... ..++++.|-+|++.++++ .+|.+.++.... +. .+.....-| ...|+++
T Consensus 159 ~~~~-l~~va~d~~~----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 159 ENNK-LILVARDYQP----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp TTE--EEEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred cCCE-EEEEEecCCC----ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 2211 1122221111 258899998776655554 668899988762 11 222212222 6677777
Q ss_pred EEec--CCC------EEEEEECCCcEEEE
Q 001363 985 TFSC--DCR------MVFTSFVDGTLSIH 1005 (1092)
Q Consensus 985 ~fs~--dg~------~l~t~~~Dg~i~vw 1005 (1092)
.+.| .+. .++.++.+|.|.+.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4445 222 47778899998844
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.17 Score=55.55 Aligned_cols=175 Identities=11% Similarity=0.042 Sum_probs=103.9
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE---EEEECCC----CCEEEEEeC---------C-CE
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN---RVVWSPD----GSLLGVAYS---------K-HI 419 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~---~l~~spd----g~~las~~~---------d-~~ 419 (1092)
..|+|.|..+.+.+..++++ ....+. .+.|..+ -.+|++|+. . |.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred cEEEEEeCCCCeEEEEEECC------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 35888998888877665543 223333 4445543 578888743 2 88
Q ss_pred EEEEEccCC----CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEe-cCCcCeEEEee
Q 001363 420 VQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE-GHGAPVYSLCP 493 (1092)
Q Consensus 420 i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~-~~~~~v~~i~~ 493 (1092)
|.++++... ..++.... ....++|++++-- ++. |+.+. .+.|.+|++...+ ....-. .....+.++..
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred EEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 999999984 22333222 2457789988766 343 33333 4789999998887 433222 12235566654
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCc-eEE--ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 494 HAKENIHFIFSISVDGKIKAWLYDSLGA-RVD--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~--~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
. +.+++.|.....+.++.++.... ... .......++++.|-++++.++.+-. .+.+.++...
T Consensus 138 ~----~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~ 202 (321)
T PF03178_consen 138 F----KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYN 202 (321)
T ss_dssp E----TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-
T ss_pred c----ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEEC
Confidence 2 34899999988888886655332 222 2233456888888877776665533 4556665543
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.19 Score=55.54 Aligned_cols=83 Identities=8% Similarity=0.065 Sum_probs=56.7
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEE-EEEcCCCC-----------------CEEEE
Q 001363 801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHDN-----------------NVIAI 861 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~-----------------~~las 861 (1092)
....+.+++.+|++++.|+.++ |.|.++|+.++..++.+++..+.-.. +....... -+++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4566889999999998888764 99999999999888877765442111 11100011 13444
Q ss_pred EeCCCcEEEEEcCCceeeEeec
Q 001363 862 GMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 862 g~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
+-.-|.|.||.+.+|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999999887666554
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.21 Score=52.14 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=89.8
Q ss_pred CeEEEEEcCCCCCEEEEEe-CCC--cEEEEEcCCceeeEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE-cCCCc
Q 001363 845 TATSLAFNPHDNNVIAIGM-DDS--TILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG 919 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~-~dg--~v~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd-~~~~~ 919 (1092)
.+.+.++++ +++.+|... .++ .++++.. +..... +.+ ..++...|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 677666555 233 4555543 333333 233 3688899999987777777677777774 23332
Q ss_pred eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe----CCcEEEEEcC---Cc--eee---eeeccCCCCCEEEEEEe
Q 001363 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS 987 (1092)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d~~i~lwd~~---~~--~~~---~~~~~~h~~~v~~l~fs 987 (1092)
... ..+...... ..|..+.+||||..+|... ++.|.+--+. .+ ..+ ..........++.+.|.
T Consensus 100 ~~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred cee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 211 112221111 1599999999999999833 5677777553 23 111 11111235688999999
Q ss_pred cCCCEEEEEECCCc
Q 001363 988 CDCRMVFTSFVDGT 1001 (1092)
Q Consensus 988 ~dg~~l~t~~~Dg~ 1001 (1092)
+++++++.+...+.
T Consensus 175 ~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 175 DDSTLVVLGRSAGG 188 (253)
T ss_pred CCCEEEEEeCCCCC
Confidence 99998777665443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.83 Score=55.37 Aligned_cols=246 Identities=9% Similarity=0.041 Sum_probs=123.3
Q ss_pred CcEEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----Cc
Q 001363 397 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 466 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~ 466 (1092)
-.+..+.|||||++||.+... ..|++-|+.+|+.+.. .+.+ . -..++|++|++.+ +++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~~-~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWTF-YYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCEE-EEEEecCCCCCCCE
Confidence 356678999999999987332 3589999998864331 1212 1 1458999999863 3333222 36
Q ss_pred EEEEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCC--CCceEEecCCCCceEEEEEcc
Q 001363 467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 539 (1092)
Q Consensus 467 i~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~ 539 (1092)
|..+++.++ +....+........ +....+.++.+++..+.. +.+.+++... ................+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 888899888 33334443333333 222224355655544433 4688888532 222222222222222222 2
Q ss_pred CCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEe
Q 001363 540 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID 617 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~ 617 (1092)
.+..++..+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 234444444333334456556665 2322 2333331 123677777763 34555566677655554332 22334433
Q ss_pred CCCCCCCCceEEEc--cCCC-EEEEEeC---CCeEEEEECCCCc
Q 001363 618 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPESN 655 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iw~~~~~~ 655 (1092)
.... ..+..+.++ +++. ++++.+. -+.+..+|..+++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 2111 112222334 3434 3333332 3677788877653
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0035 Score=65.60 Aligned_cols=106 Identities=14% Similarity=0.257 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhh
Q 001363 6 KDLVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYF 74 (1092)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~----------~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~ 74 (1092)
+.+...|..++...|+.+.+..|-+|+|... ++.++-++|.+||-.-|++.+..- ..+.+. ..++-|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHH
Confidence 3457899999999999999999999999864 278889999999999999998663 223322 123789
Q ss_pred HhHHhhhhhhccCCCHH--HHHHHHHhhccccCCCCHHHHH
Q 001363 75 EIRKQNFFEALDGHDIA--KALNILKKDLKDFAPGNEELFK 113 (1092)
Q Consensus 75 ~i~~q~~~Ell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~ 113 (1092)
.+..+.|++++..|... +|++..|+.++|+........+
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQ 235 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQ 235 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHH
Confidence 99999999999999887 9999999999999654433333
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0027 Score=70.16 Aligned_cols=93 Identities=22% Similarity=0.430 Sum_probs=72.4
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE-EEEECCCCCEEEEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~las~ 414 (1092)
.|.-+.|+|.-. ++|.+..+|.|.+..++ .+.+ |+ +.-|+..|+ +++|.|||+.||+|
T Consensus 22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaVg 80 (665)
T KOG4640|consen 22 NIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAVG 80 (665)
T ss_pred ceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEEE
Confidence 788899999988 89999999999998887 4433 33 333666676 99999999999999
Q ss_pred eCCCEEEEEEccCCCcccceEEEcccccceeEEEEec
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 451 (1092)
-.||+|++-|+++|..+... ...-...|.++-|.+
T Consensus 81 ~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 81 FKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred ecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 99999999999998765531 122344567777763
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.18 Score=55.78 Aligned_cols=84 Identities=12% Similarity=0.248 Sum_probs=58.6
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-----------------CE
Q 001363 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ 592 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~ 592 (1092)
..+.+++.+|++++.++. |.-+.|.++|..++..++..+|.. +..+.-+.....+ .+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence 357889999998877664 346779999999999999988876 2222222221111 12
Q ss_pred E-EEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 593 I-LAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 593 l-~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
| +-+-.-|.|.||.++.|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 2 33667899999999999888877654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.7 Score=48.97 Aligned_cols=158 Identities=11% Similarity=0.030 Sum_probs=82.8
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001363 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 919 (1092)
....+.+..+..++ |+++++++..-....-||--...-...-..-+..|.+|.|+||+.+.+.+ ..|.|+.=+.....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34456788899999 89998877655555567654321122222346789999999998776644 88888887722211
Q ss_pred eeeeeeeecC-CCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeecc--CCCCCEEEEEEecCCCEEEEE
Q 001363 920 IQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTS 996 (1092)
Q Consensus 920 ~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~ 996 (1092)
..-.+.+... .... .+..++|.+++...|++..|.+. ...+.|+.-..... .-......+.|.++.+-++ .
T Consensus 219 ~~w~~~~~~~~~~~~----~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-l 292 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGY----GILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-L 292 (302)
T ss_dssp EEE---B-TTSS--S-----EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E
T ss_pred cccccccCCcccCce----eeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-E
Confidence 1111111111 1111 37899999999999988887553 45555554443222 2255688899987765555 4
Q ss_pred ECCCcEEEE
Q 001363 997 FVDGTLSIH 1005 (1092)
Q Consensus 997 ~~Dg~i~vw 1005 (1092)
+.+|.+.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 578887655
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0022 Score=43.81 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.6
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd 914 (1092)
+++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0049 Score=68.20 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001363 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 922 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~ 922 (1092)
..+.-+.|+| .-.++|++..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4677899999 88899999999999999998 777888887888888 99999999999999999999999999976443
Q ss_pred eeeeecCCCCcCCCCCceEEEEc
Q 001363 923 CRSLQTPDGVMTLAPSETHIQFH 945 (1092)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~l~~s 945 (1092)
...... . ..|..+-|+
T Consensus 99 ~~~~s~----e---~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSV----E---TDISKGIWD 114 (665)
T ss_pred cccccc----c---cchheeecc
Confidence 321111 1 246677776
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.044 Score=59.62 Aligned_cols=146 Identities=9% Similarity=0.114 Sum_probs=101.7
Q ss_pred EEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCE--E-----EEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001363 858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930 (1092)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~--l-----~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 930 (1092)
+|.++.....++--|++.|+.+..+.-|.. |.-+.+.|+.+. | +.|=.|..|.-||..-.........+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 444555666788899999999999997777 888888887532 2 22445777899987642221111111111
Q ss_pred CCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 931 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 931 ~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
........|.+-..+|..++.+.+|.|++||- .+....+.+++-..+|..+..+.||++|+.. .+..+.+-++.
T Consensus 427 --y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 --YSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred --cccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 11112356677777777777789999999998 6766667788889999999999999999855 46677777654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=2 Score=52.07 Aligned_cols=244 Identities=9% Similarity=0.019 Sum_probs=121.2
Q ss_pred CceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.+..+.+||||++++.+.+.+| +|++-|+.+|..+.. . +.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------ccC---cceEEEEeeCCCEE
Confidence 5777889999996555544444 488999988864421 0 111 11459999999988
Q ss_pred EEEeCC------CEEEEEEccCCCcccceEEEccccccee-EEEEecCCCcEEEEEEe-CCCcEEEEECC--CCceeEEE
Q 001363 412 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF 481 (1092)
Q Consensus 412 as~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~l~l~s~~-~d~~i~vwd~~--~~~~~~~~ 481 (1092)
+....+ ..|..+++.++..-... .+.+...... .+..+.|++++++-+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776442 35788888877311111 2222222233 33445588853322222 34578888843 34422222
Q ss_pred ecCCcCeEEEeecccCCccEEEEEecC-C--eEEEEEcCC-CCceEEecC-CCCceEEEEEccCCCEEEEEecCCCCcee
Q 001363 482 EGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~d-g--~i~vwd~~~-~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
....+....+. + . .+.+++....+ . .|...++.. .+....+.. ....+..+.+. ++.|+..... .+...
T Consensus 266 ~~~~~~~~~~~-~-~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-H-Y-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS 339 (686)
T ss_pred ECCCCCEEEEE-e-C-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence 21222222222 1 1 12233332222 2 343344442 222223333 23367777776 4455544432 34666
Q ss_pred EEEEeCCCCeEEEEEe-eccccCCceEEEEEc--CCCC-EEEEEe---CCCcEEEEECCCCc
Q 001363 557 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 611 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~ 611 (1092)
+++++..++.. ..+. ... ..+..+.++ +++. .+++.+ .-+.+..+|..+++
T Consensus 340 l~~~~~~~~~~-~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTREV-IGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCce-EEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 78888654433 3332 111 123333344 3434 333332 44678888888765
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.065 Score=63.16 Aligned_cols=199 Identities=10% Similarity=0.008 Sum_probs=108.1
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCcee--eEeeccccCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcee
Q 001363 855 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ 921 (1092)
Q Consensus 855 d~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg-----~I~iwd~~~~~~~ 921 (1092)
++.+.+.|+.+ ..+..||..+..- +..+.........+ .-+|+..+.||.++ ++..||..+++..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 66788888754 3577888877542 22222111112222 23678888888764 4788998876533
Q ss_pred eeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eC-----------------------CcEEEEEcCCceeeeeeccCC
Q 001363 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------------------THLAIYEAEELTCLKQWFPIS 977 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d-----------------------~~i~lwd~~~~~~~~~~~~~h 977 (1092)
....+..... ... +..-+|++.+.| .+ ..+..||..+.+-... .+-.
T Consensus 381 ~~~~mp~~r~------~~~--~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~ 451 (557)
T PHA02713 381 MLPDMPIALS------SYG--MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFW 451 (557)
T ss_pred ECCCCCcccc------ccc--EEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCCC
Confidence 3222221111 111 223367766664 22 2477888876654322 1111
Q ss_pred CCCEEEEEEecCCCEEEEEECCC------cEEEEEcCC-CceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEe
Q 001363 978 SVPISQATFSCDCRMVFTSFVDG------TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~~Dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1050 (1092)
.......+..-+|+..+.||.++ .+..||..+ .+... . ...+.. .....++.. ++...++|+
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~-~---~~m~~~-----r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL-I---TTTESR-----LSALHTILH--DNTIMMLHC 520 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE-c---cccCcc-----cccceeEEE--CCEEEEEee
Confidence 11222223345677777787542 467888887 44331 1 112211 112223333 478999999
Q ss_pred CCC--cEEEEecCCCCCccccCCCCCccc
Q 001363 1051 TNG--EVYVIEPNEPGDTWAVLPPDEIVG 1077 (1092)
Q Consensus 1051 ~dg--~v~~w~~~~~~~~~~~~~~~~~~~ 1077 (1092)
.|| ++..||+ ...+|...+|.-.+.
T Consensus 521 ~~~~~~~e~yd~--~~~~W~~~~~~~~~~ 547 (557)
T PHA02713 521 YESYMLQDTFNV--YTYEWNHICHQHSNS 547 (557)
T ss_pred ecceeehhhcCc--ccccccchhhhcCCc
Confidence 999 7788888 455699888876544
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.031 Score=60.72 Aligned_cols=144 Identities=13% Similarity=0.139 Sum_probs=95.6
Q ss_pred CCCEEE-EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEE-----EEEeCCCcEEEEECCCC-c-ee
Q 001363 407 DGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVTG-S-RT 478 (1092)
Q Consensus 407 dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l-----~s~~~d~~i~vwd~~~~-~-~~ 478 (1092)
+..+|+ ++.....++--|++.|+.+. ++.-|.. |+-+.+.|+.+.-.+ +.|-.|..|.-||++-. . .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444444 34444568888999998776 5555555 888888887652111 23556889999998732 2 23
Q ss_pred EEEecCC----cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 479 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 479 ~~~~~~~----~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
...++|. ....|.+ ...+ .+++.||.+|.||+||--.......+.+-+.+|..+..+.||+++++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~a--TT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFA--TTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceee--ecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2233332 2233333 2444 4899999999999999744445556777888999999999999988765 4
Q ss_pred eeEEEEeC
Q 001363 555 SFLVEWNE 562 (1092)
Q Consensus 555 ~~i~iwd~ 562 (1092)
.++.+.+.
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 45666554
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.23 Score=51.83 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=91.4
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEE-cCCceee
Q 001363 803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 879 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~~~ 879 (1092)
..+.+.++|+|++.+|... ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3678999999999888776 5444444444333333332 233788889999 677777777677777774 3333321
Q ss_pred -Eeec--cccCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCcee----eeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 880 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 880 -~~l~--~h~~~V~~l~~spdg~~l~s~s---~Dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
..+. .-.+.|+.+.+||||..+|... .++.|.+=-+...... ....+...... ...+..++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence 1111 1122899999999999988766 3567777765532211 11112222111 13689999999999
Q ss_pred EEEEE
Q 001363 950 RFLLV 954 (1092)
Q Consensus 950 ~la~~ 954 (1092)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88874
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0032 Score=42.97 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=32.6
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEe
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd 363 (1092)
....+..|.+.|++++|+|++. ++++|+.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 4566778999999999999997 789999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.057 Score=59.82 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=93.9
Q ss_pred CCeEEEEEcCCCCCEEEEEe--CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCC
Q 001363 844 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd----g~~l~s~s~Dg~I~iwd~~~ 917 (1092)
.++..+||.. +.+.+.+.- .+|.+++= +.+.+.+|+ .|..+.|+|- -..|...-.-+.|.||-+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4678899984 444444432 23333331 223455554 4889999985 33455567788899999873
Q ss_pred Cceeeeeee--ecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEE
Q 001363 918 WGIQTCRSL--QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 994 (1092)
Q Consensus 918 ~~~~~~~~~--~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 994 (1092)
......+.+ ++-+-.....--...+.|+|....|++ ...+.-.++++......-..-....+.|-|.+|..||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 322222222 222111111123467899999999988 44444455666533322221223478999999999998877
Q ss_pred EEE-CCCcEEEEEcCCCc
Q 001363 995 TSF-VDGTLSIHEASNLE 1011 (1092)
Q Consensus 995 t~~-~Dg~i~vwd~~~~~ 1011 (1092)
++- ..=.-++||-....
T Consensus 172 VAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred EEeCCeEEEEEecCchhh
Confidence 654 33346799865543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.087 Score=45.39 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=67.1
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEc
Q 001363 889 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964 (1092)
Q Consensus 889 V~~l~~sp---dg-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~ 964 (1092)
|++|++.. || +.|+.||.|..|++|+=+. .+...... ..|++++-...+++..+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 67777765 32 6799999999999998765 22222222 2588888888877777778999999985
Q ss_pred CCceeeeeeccCCCCCEEEEEEec---CC-CEEEEEECCCcEEE
Q 001363 965 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLSI 1004 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~t~~~Dg~i~v 1004 (1092)
. .+.|.......++++++.. || .-|++|-.+|.|-+
T Consensus 71 ~----~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 S----QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c----ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 3 2223333344577766543 33 25888888887653
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.19 Score=59.03 Aligned_cols=235 Identities=11% Similarity=0.025 Sum_probs=125.1
Q ss_pred CCCEEEEEeCC------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC------CcEEEEECCC
Q 001363 407 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT 474 (1092)
Q Consensus 407 dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~~ 474 (1092)
.+.++++|+.+ ..+..+|..+++-.. ...+. +...-.++++.. +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566666655 358888888763221 11122 222233444443 44 78888888 3577888887
Q ss_pred CceeE--EEecCCcCeEEEeecccCCccEEEEEecCCe-----EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 475 ~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
++-.. .+...........+ +|.+.+.|+.||. +-.||..+.+-...-......-..-...-+|+..++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 76432 11111111111111 6678889998875 6667766544333222222122222334467777777
Q ss_pred ecCCCCc--eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceEEEEeCCC
Q 001363 548 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 548 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-----i~iwd~~~~~~~~~~~~~~ 620 (1092)
|.++..+ ..+..||+.+++....-.-.. .+.... ++. -++...++||.|+. |..||..+.+....-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7655432 678899998876644332222 011122 222 24566667776653 7789988877665532222
Q ss_pred CCCCCceEEEccCCCEEEEEeCCC-----eEEEEECCCCc
Q 001363 621 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN 655 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~ 655 (1092)
....+..+ .-++...++|+.|| ++..||..+.+
T Consensus 512 ~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 512 PRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccccccEE--EECCEEEEEecccCccccceeEEcCCCCCc
Confidence 21111112 23577778887764 45566665553
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.99 Score=50.19 Aligned_cols=284 Identities=12% Similarity=0.104 Sum_probs=147.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCc-----eEEEEeCCCCCCCCceEEEc---c--CCCEEEEEeCCCeEEEEECCCC--c--
Q 001363 590 KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFN---K--NGTLLAVIANENRIKILETPES--N-- 655 (1092)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s---~--~~~~l~~~~~dg~i~iw~~~~~--~-- 655 (1092)
...+++||..|.++||+..... .+-..+.. .+|..+..- + +...||+ -.-..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 4689999999999999986543 22222222 235555432 2 2334555 34567888876311 1
Q ss_pred -----eeeecccccC--ceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001363 656 -----SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 656 -----~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~ 728 (1092)
.+.....|.- ...++.+.|.+. ......+..-+.||.+.+++-+... ....+
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg-----------------~~~~~~IcVQS~DG~L~~feqe~~~----f~~~l 171 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGG-----------------VKGRDFICVQSMDGSLSFFEQESFA----FSRFL 171 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCC-----------------CCCceEEEEEecCceEEEEeCCcEE----EEEEc
Confidence 1111111111 112222222221 1224567778899999999855322 11112
Q ss_pred CCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCccc----------ccccCCccccCCCCCceeeecCCC
Q 001363 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA----------TTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~l~~ 798 (1092)
|..-. ...+.|.+....+++++++..+..|+++.-....+... ....-..-|...-|+...
T Consensus 172 p~~ll---PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l------ 242 (418)
T PF14727_consen 172 PDFLL---PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL------ 242 (418)
T ss_pred CCCCC---CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE------
Confidence 22112 22468888888899999999999998754222111110 111122335444444222
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEE-E------cCCCCCEEEEEeCCCcEEEE
Q 001363 799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA-F------NPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~-~------s~~d~~~lasg~~dg~v~iw 871 (1092)
.+..+.++.....+++-+...+.+.+-. |......+ ......|++ | .+..+..+++++.++++.||
T Consensus 243 -----~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy 315 (418)
T PF14727_consen 243 -----DIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVY 315 (418)
T ss_pred -----EEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEE
Confidence 2333444444555666666777776653 44333222 122222221 1 12112358889999999998
Q ss_pred EcCCceeeEeeccccCCeEEEE---EcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 872 NARSSEVISKLEGHSKRVTGLV---FSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 872 d~~~~~~~~~l~~h~~~V~~l~---~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
.= .+.+........+| ++. |..-...+++-+.+|.+.+-=+.+
T Consensus 316 ~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 316 ED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred eC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 53 34444443333333 332 223356888889999988876655
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.12 Score=61.02 Aligned_cols=203 Identities=8% Similarity=-0.014 Sum_probs=102.6
Q ss_pred CCCcEEEEEEeCC------CcEEEEECCCCceeE--EEecCCcCeEEEeecccCCccEEEEEecCC-----eEEEEEcCC
Q 001363 452 PCKQISVITCGDD------KTIKVWDAVTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 518 (1092)
Q Consensus 452 d~~~l~l~s~~~d------~~i~vwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~ 518 (1092)
++. +++.||.+ ..+..||..+..... .+.........+.+ ++.+.+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 555 66667643 347788887765321 11111111112222 556777777654 377888776
Q ss_pred CCceEEecCCCCceEEEEEccCCCEEEEEecCCC-------------------CceeEEEEeCCCCeEEEEEeeccccCC
Q 001363 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-------------------GESFLVEWNESEGAIKRTYQGLQLQHN 579 (1092)
Q Consensus 519 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-------------------~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1092)
.+-...-..+.......+..-+|+..+.||.++. ....+..||+.+.+....-.-.. ...
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~ 455 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTI 455 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccc
Confidence 4322211111111111122346777777765321 02458889988876543222111 011
Q ss_pred ceEEEEEcCCCCEEEEEeCC------CcEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC--eEEEEE
Q 001363 580 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 650 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iw~ 650 (1092)
....+ .-++...+.|+.+ ..+..||..+ .+....-...........++ -+++..++|+.++ .+..||
T Consensus 456 ~~~~~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 456 RPGVV--SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cCcEE--EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 11122 2245555666643 2467899887 55543333222221222222 2688889999888 777888
Q ss_pred CCCCceeeecccccC
Q 001363 651 TPESNSVDAAGVLSD 665 (1092)
Q Consensus 651 ~~~~~~~~~~~~~~~ 665 (1092)
..+.+.......|..
T Consensus 532 ~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 532 VYTYEWNHICHQHSN 546 (557)
T ss_pred cccccccchhhhcCC
Confidence 887766555444443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.49 E-value=1.2 Score=48.74 Aligned_cols=113 Identities=24% Similarity=0.286 Sum_probs=58.8
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC---CCEEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLLG 412 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~la 412 (1092)
..+.|+|.|||+ ++++ ...|.|++++ ..+..... +-++ ..+..........++|+|+ ..+|.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~----v~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTP----VADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEE----EEE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcce----eccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 568999999997 6665 4589999999 44543110 0000 0113345678899999995 33443
Q ss_pred E-EeCC--------CEEEEEEccCCC-ccc---ce-EEEcc---cccceeEEEEecCCCcEEEEEEeCCC
Q 001363 413 V-AYSK--------HIVQLYAYHGGS-DAR---QQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 413 s-~~~d--------~~i~iwd~~~~~-~~~---~~-~~~~~---h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
+ .+.. ..|.-|....+. .+. .+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 3 3321 245555555441 111 11 01111 223456699999995 455555443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.06 Score=63.97 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=99.1
Q ss_pred CCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC-eEEEeeccc---CCccEEEEEecCCeEEEEEcCCCCceEE-ec-
Q 001363 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVD-YD- 526 (1092)
Q Consensus 453 ~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~i~~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~- 526 (1092)
.+.++|........|+-.|+++|+.+..+..|... |..++.... -+..-.+.|-.+..+..||.+-...... ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33334555556788999999999999999888755 777654211 0123466777888899999987543221 11
Q ss_pred ---CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001363 527 ---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 527 ---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1092)
.......|++-+.+|. ||+|+. +|-|++||.-..+....+.+.. .+|..+..+.||+++++.+. ..+.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLl 642 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLL 642 (794)
T ss_pred cccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEE
Confidence 1234677888777775 566665 4459999965444444555555 89999999999999988775 4555
Q ss_pred EEEC
Q 001363 604 IWDM 607 (1092)
Q Consensus 604 iwd~ 607 (1092)
+++.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 6654
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.098 Score=45.10 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=65.2
Q ss_pred ceEEee---cCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 337 PMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 337 V~~v~~---spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
|+++++ .-||..-|++|+.|..|+||+-+ +.+.. + ...+.|++++-... .+++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--i------------------~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--I------------------TETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--E------------------ecccceEEEEEcCC-CEEEE
Confidence 555555 45666679999999999999844 33332 1 14567888877766 67889
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEe---cCCCcEEEEEEeCCCcEE
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS---APCKQISVITCGDDKTIK 468 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s---~d~~~l~l~s~~~d~~i~ 468 (1092)
+..+|+|-+|+-.. + ....+... .+.++++. .||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~----R-lWRiKSK~-~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ----R-LWRIKSKN-QVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc----e-eeeeccCC-CeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999887643 1 11222222 24455443 34443 588888888764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.75 Score=50.35 Aligned_cols=241 Identities=12% Similarity=0.127 Sum_probs=119.7
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCcee---eEEe----cCCCCCeEEEEEcCC---CCCEEEEEeCC--------
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD-------- 865 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~lasg~~d-------- 865 (1092)
..+.|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999998877789999999 44443 2222 223456799999992 23333333321
Q ss_pred CcEEEEEcCCc-------ee-eEeecc---ccCCeEEEEEcCCCCEEEEEeCCCc-----------EEEEEcCC-Cceee
Q 001363 866 STILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-----------IFVWDVDG-WGIQT 922 (1092)
Q Consensus 866 g~v~iwd~~~~-------~~-~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~-----------I~iwd~~~-~~~~~ 922 (1092)
..|.-|....+ +. +..+.. ....-..|+|.|||.+.++.+..+. =+|+.+.. +....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 13444444333 11 122222 2223456999999988888776543 01111111 00000
Q ss_pred eeeee---------cCCCCcCCCCCceEEEEccC-CCEEEE--EeCCcEEEEEcCCcee----------------e----
Q 001363 923 CRSLQ---------TPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC----------------L---- 970 (1092)
Q Consensus 923 ~~~~~---------~~~~~~~~~~~v~~l~~s~d-g~~la~--~~d~~i~lwd~~~~~~----------------~---- 970 (1092)
..... -..|. .....++|.|. |++.++ +.+..=.|.-+..|.- .
T Consensus 162 dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00000 00011 12467999999 887776 4443322322222210 0
Q ss_pred -------eeeccCCCCCEEEEEEec-------CCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEE
Q 001363 971 -------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1036 (1092)
Q Consensus 971 -------~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1036 (1092)
..+.-.+...+..+.|-. +|.++++.-..+.|....+..+......... . . ...-+++.+
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~-~---~~~~r~~~v 311 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEF--L-G---GFGGRPRDV 311 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEE--C-T---TSSS-EEEE
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEc--c-c---cCCCCceEE
Confidence 000112345677777753 4556666655667777777755333222211 1 1 112246688
Q ss_pred EECCCCCCEEEEEeCCCcEE
Q 001363 1037 AAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus 1037 ~~~p~d~~~l~~~~~dg~v~ 1056 (1092)
++.| ||.++++.+.+|.|+
T Consensus 312 ~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEET-TSEEEEEE-TTTTEE
T ss_pred EEcC-CCeEEEEECCCCeEe
Confidence 8998 588888888888875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.4 Score=45.01 Aligned_cols=185 Identities=9% Similarity=0.095 Sum_probs=113.4
Q ss_pred CeeEEEEecCCCEEEEEe-C--CeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001363 804 AVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1092)
-...+.|..+|.++-+.+ - ..|+.+|+.+++......-.. ----.++.. ++++..-.-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 345788878888877776 2 469999999998776544332 223445555 4556666788999999999999988
Q ss_pred EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCc
Q 001363 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 958 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~ 958 (1092)
.++. ..+.=+.++ .|++.|+.......|.++|.++-+......+....... ..+.-+.+- +|...|=. ....
T Consensus 124 ~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv---~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 124 GTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV---SNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC---CCcEeEEEE-cCEEEEEeCCCCe
Confidence 8886 345667777 46777777666777999998875544433333221112 245566665 55444433 5567
Q ss_pred EEEEEcCCceeeeeecc-----------CC---CCCEEEEEEecCCCEEEEEE
Q 001363 959 LAIYEAEELTCLKQWFP-----------IS---SVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 959 i~lwd~~~~~~~~~~~~-----------~h---~~~v~~l~fs~dg~~l~t~~ 997 (1092)
|...|..+|+....+-. .+ ..-...+++.|++..+...|
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88888888887764310 01 34577899988776555544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.18 E-value=2.9 Score=46.60 Aligned_cols=277 Identities=13% Similarity=0.103 Sum_probs=149.0
Q ss_pred CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-----CCCEEEE
Q 001363 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS 819 (1092)
Q Consensus 745 ~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~-----dg~~l~~ 819 (1092)
+...+++|+..|.+++|+-......+. ..+.... -..+|..+..-+ +...||+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaV 93 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAV 93 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEE
Confidence 345688899999999998533222111 1122211 344566555432 3456777
Q ss_pred EeCCeEEEEEcCC--ce-------eeEEecCCC--CCeEEEEEcCC----CCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001363 820 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 820 ~sdg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
-.-..+.||.+.. |. .+..+..|. .....++.-|. +..++++=+.||.+.+|+-+.-.....+.+
T Consensus 94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~ 173 (418)
T PF14727_consen 94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD 173 (418)
T ss_pred ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence 6778888888731 11 112222232 23334443332 246899999999999999886554455544
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee---------------------eeeeeecCCCCcCCCCCceEEE
Q 001363 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ---------------------TCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
.--...++|.+.-..+++++.+..|.-|....-... ....+...+... .|..+.
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l----~i~v~~ 248 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL----DIQVVR 248 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE----EEEEEE
Confidence 222334788888889999999988888875321000 000011111111 233444
Q ss_pred EccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEE-EEec----CCC---EEEEEECCCcEEEEEcCCCceEEe
Q 001363 944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA-TFSC----DCR---MVFTSFVDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus 944 ~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l-~fs~----dg~---~l~t~~~Dg~i~vwd~~~~~~~~~ 1015 (1092)
++.....+++-.+.++...+.. |.......- .....++ .|.. ++. .++.++.++++.||.=.+....+.
T Consensus 249 ~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~ 325 (418)
T PF14727_consen 249 FSSSESDIVVLGERSLFCLKDN-GSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ 325 (418)
T ss_pred cCCCCceEEEEecceEEEEcCC-CeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC
Confidence 4444455555556666666653 443332111 2222222 2222 322 477788999999997444433333
Q ss_pred eccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001363 1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1016 ~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
.. ..+|. +.++.-++-...|++-+.+|.+.+-=+-.
T Consensus 326 l~----------~~PVa-l~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 326 LP----------HVPVA-LSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CC----------CCCEE-EEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 31 12222 22332222357899999999998865543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.054 Score=64.06 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=78.5
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
-+..++.|+..|.+-..|+.+. ++....-..-.++|++++|+.||+ +++.|-.+|.|.+||+.+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567888988898988888764 221111123456999999999999 789999999999999999999999998888
Q ss_pred CeEEEeecc-cCCccEEEEEecCCeEEEEEc
Q 001363 487 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY 516 (1092)
Q Consensus 487 ~v~~i~~~~-~~~~~~l~s~~~dg~i~vwd~ 516 (1092)
+.+.+-+.. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 887775432 334456777777776 5544
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.13 Score=61.29 Aligned_cols=249 Identities=9% Similarity=0.042 Sum_probs=143.0
Q ss_pred CCCeeEEEEecCCCEEEEEe--C-CeEEEEEcCCceeeE-----EecCC------CCCeEEEEEcCCCCCEEEEEeCCCc
Q 001363 802 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMPP------SPTATSLAFNPHDNNVIAIGMDDST 867 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~s--d-g~i~iwd~~~~~~~~-----~~~~~------~~~i~~l~~s~~d~~~lasg~~dg~ 867 (1092)
...+..+...+|+...++.. + -.|..||+.+...-. .+..| .....++.|.|.=-...|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45666777888887776664 3 358999987543222 12212 2344677788743445666778999
Q ss_pred EEEEEcCCce-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEcc
Q 001363 868 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1092)
Q Consensus 868 v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 946 (1092)
|++..+.-.. .+..+. -....++++|+|.|+.++.|-..|++.-|...-.... .+..+.... ...|.++.|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 9988775432 223333 5567899999999999999999999998876653211 222222111 13688888888
Q ss_pred CCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCC
Q 001363 947 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1026 (1092)
Q Consensus 947 dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1026 (1092)
.-.++++-... ++ ....+...+++.+ .-.-||.+.+-..-.+..- | ..++...
T Consensus 254 t~eflvvy~n~--------ts--------~~~dpd~y~~~~~------k~kp~g~~nF~E~~d~tpp--f---g~~~rq~ 306 (1405)
T KOG3630|consen 254 TQEFLVVYGNV--------TS--------ETDDPDSYDQKMY------KIKPDGSANFQETFDITPP--F---GQIVRQP 306 (1405)
T ss_pred ceeEEEEeccc--------cc--------CcCCchhhhhccc------cccCcceeeeccccCCCCC--c---cccCccc
Confidence 77777761110 00 0011111111111 1113444443332222221 1 0111111
Q ss_pred ccccccceEEEECCCCCCEEEEEeC-CCcEEEEecCCCCCccccCCCCCcccCCCCCCccccc
Q 001363 1027 SCLHVYPHAIAAHPLKPTQFAVGLT-NGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDR 1088 (1092)
Q Consensus 1027 ~~~~v~~~~~~~~p~d~~~l~~~~~-dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1088 (1092)
|. ....-..|.|++.+.++++.. ...|-+|... ..|....+.|-.++..+.+.++|+
T Consensus 307 h~--y~~~L~~W~~~~~~vVvvansaSsEvsila~~---~qW~~w~~vde~ra~LP~s~k~d~ 364 (1405)
T KOG3630|consen 307 HM--YKVTLSGWIEPDANVVVVANSASSEVSILASM---KQWIEWSQVDEKRAVLPISEKTDK 364 (1405)
T ss_pred hh--HHHhhhhhcccccceEEEecccccchhhhhhh---cceeeccccccceeeecccccCCC
Confidence 11 112234677766666666554 3468899982 569999999888999999888883
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=3.2 Score=45.52 Aligned_cols=157 Identities=11% Similarity=0.031 Sum_probs=87.8
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcC
Q 001363 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~ 965 (1092)
.+.+.++.+.|++.+++++ ..|.+.. ..+.+. .....+..... ..+..+++.++++.++++..|.+.+=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~~~-----~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRNSS-----RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCCCc-----ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 4568899999998766554 5564432 211111 11222222211 25889999999999888877776543344
Q ss_pred CceeeeeeccC---CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCC
Q 001363 966 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus 966 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1042 (1092)
.|..-.....+ ....+..+.|.+++..++ ++.+|.+. ...+.|+...........+. ..+ .+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence 44432221111 234578899999887665 44677554 45666655433321111111 122 344443
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 001363 1043 PTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1043 ~~~l~~~~~dg~v~~w~~~ 1061 (1092)
++....++..|.|-.|+-.
T Consensus 313 ~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCceEEECCCceEEEecCC
Confidence 3455667788998887653
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.97 E-value=2.8 Score=44.56 Aligned_cols=230 Identities=11% Similarity=0.069 Sum_probs=111.4
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-cee-
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEV- 878 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~- 878 (1092)
...++.|..+ ..++++..+ +.+.....|+.-..+. .-.+....+.... ++..++ ++..|.| |...+ |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~i--y~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAI--YRTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--E--EEESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcE--EEeCCCCCCe
Confidence 4567777643 445555545 3333434343332221 1222333333333 333333 4445543 33333 321
Q ss_pred eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCc
Q 001363 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 958 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~ 958 (1092)
......-.+.+..+.-++||+++++++.-....-||-.... ......... ..|..+.|+|++.+.+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcE
Confidence 22233445778899999999999987766666677765422 122222211 3699999999999988888888
Q ss_pred EEEEE-cCCceeeeee-cc--CCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccce
Q 001363 959 LAIYE-AEELTCLKQW-FP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus 959 i~lwd-~~~~~~~~~~-~~--~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
|+.=+ ....+..... .+ ...-.+..++|.+++...++|+ .|+ .+...+.|+.-.+.......+.. ++
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~~n-----~~-- 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVPSN-----LY-- 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS----------
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccceECccccCCCCc-----eE--
Confidence 88877 2223222210 11 1244588999999988777665 454 45677888777666644444444 34
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEE
Q 001363 1035 AIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 1035 ~~~~~p~d~~~l~~~~~dg~v~~w 1058 (1092)
.+.|.+ ++.-.+-+.+|.|--|
T Consensus 280 ~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEEcC--CCceEEECCCcEEEEe
Confidence 455553 2455555588877655
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=2.5 Score=43.33 Aligned_cols=204 Identities=16% Similarity=0.227 Sum_probs=121.8
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001363 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s 811 (1092)
+....+.+++|+|+.+.|++........++= ...|..+.+..+.+ -.....+.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence 3445599999999999999988876555432 23455466666654 2334567777
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCceeeEE-------ec--CC-CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce---
Q 001363 812 KNDAYLFSAS-GGVISLYIVMTFKTILT-------IM--PP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--- 877 (1092)
Q Consensus 812 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~-------~~--~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--- 877 (1092)
.+|+++++-- ++.+.++.+.....+.. +. .+ ....-.+||+| .+..|..+-+-.-+.||....+.
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 8888777665 57787777665432221 11 12 44667899999 66677777777777777665332
Q ss_pred eeEeeccc-------cCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 878 VISKLEGH-------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 878 ~~~~l~~h-------~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
.+.....+ -..|.++.|.+ .+.+|+-+.+++.+.-.|................+-...-.....+++.++|.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 11111112 23467788876 45667777778878777777643222112222222221112456788888888
Q ss_pred EEEEEeCCcEEE
Q 001363 950 RFLLVHETHLAI 961 (1092)
Q Consensus 950 ~la~~~d~~i~l 961 (1092)
+-+++..+-.+.
T Consensus 297 lYIvSEPnlfy~ 308 (316)
T COG3204 297 LYIVSEPNLFYR 308 (316)
T ss_pred EEEEecCCccee
Confidence 777765544433
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.68 Score=54.53 Aligned_cols=234 Identities=12% Similarity=0.097 Sum_probs=129.5
Q ss_pred cCCCEEEEEe-C------CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC-C-----cEEEEEcCCc
Q 001363 812 KNDAYLFSAS-G------GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-S-----TILIYNARSS 876 (1092)
Q Consensus 812 ~dg~~l~~~s-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-g-----~v~iwd~~~~ 876 (1092)
..+.+++.|+ . ..+..||..++.-.. .+. ....-.++++. ++.+.++|+.| | ++..||..+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3445555554 2 348888888764332 222 22233455555 56888999999 3 6778888776
Q ss_pred ee--eEeeccccCCeEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 877 EV--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 877 ~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
+- +..+...........+ +|.+.|.||.||. |-.||..+.+......+... .-..-...-+|.
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCE
Confidence 42 2223222222222222 7889999999974 67777777553322111111 112233344666
Q ss_pred EEEE-EeC------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCc-----EEEEEcCCCceEEeec
Q 001363 950 RFLL-VHE------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-----LSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 950 ~la~-~~d------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~-----i~vwd~~~~~~~~~~~ 1017 (1092)
+.++ |.+ .++..||..+......-...-...-.. .-.-++...+.||.|+. |..||..+.+....
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-- 506 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-- 506 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEc--
Confidence 6666 423 358889988776443211111111112 33457888888888863 77788887766522
Q ss_pred cccccCCCCccccccceEEEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCCC
Q 001363 1018 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1072 (1092)
Q Consensus 1018 ~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~ 1072 (1092)
...... .....++.. ++...++|+.|| +|..||. ...+|...++
T Consensus 507 --~~m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp--~~d~W~~~~~ 555 (571)
T KOG4441|consen 507 --APMTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP--ETDTWTEVTE 555 (571)
T ss_pred --ccCccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCC--CCCceeeCCC
Confidence 111111 111112222 468899999887 5677866 5556877766
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=3 Score=42.77 Aligned_cols=171 Identities=13% Similarity=0.192 Sum_probs=108.1
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
+.+....+.++.|+| +.+.|++......-.|+=...|+.+.++.- .-.....+.+..+|++.++--.++.+.+..++.
T Consensus 81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 344556699999999 777777777777777776677888877652 122345688888999988888899999998876
Q ss_pred Ccee-eeeeeecCCCCcCC-CCCceEEEEccCCCEEEEEeCC-cEEEEEcCCce-eeee-eccCC-------CCCEEEEE
Q 001363 918 WGIQ-TCRSLQTPDGVMTL-APSETHIQFHKDQTRFLLVHET-HLAIYEAEELT-CLKQ-WFPIS-------SVPISQAT 985 (1092)
Q Consensus 918 ~~~~-~~~~~~~~~~~~~~-~~~v~~l~~s~dg~~la~~~d~-~i~lwd~~~~~-~~~~-~~~~h-------~~~v~~l~ 985 (1092)
.... .....+..-+.... ......+||.|.+..|..+.+. -+.||.++.+. .+.. ....+ -..|+++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 5321 11111111111111 2357899999999888887554 46777665332 1110 01111 23567777
Q ss_pred Eec-CCCEEEEEECCCcEEEEEcCCC
Q 001363 986 FSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 986 fs~-dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
|.+ .+.+|+-+.+++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 775 4556666666777777776644
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.5 Score=41.50 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=39.2
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001363 807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 853 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 853 (1092)
.+++..+|.+.++.- .++|.-.|..+|+.+..+.-+...|++++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 455566777766664 68999999999999999998999999999964
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.52 E-value=2.7 Score=41.30 Aligned_cols=136 Identities=14% Similarity=0.100 Sum_probs=77.5
Q ss_pred ccceeEEEEecCCCcEEEEEEeCC---------CcEEEEECCCCceeEEEecCCcCeEEEeecccCCc-cEEEEEecCCe
Q 001363 441 VGNVNDLAFSAPCKQISVITCGDD---------KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGK 510 (1092)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~~~d---------~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~ 510 (1092)
..+.+.-..+|+|+ +++-.-.| |.++.|-. +..+..+...-.--+.++|. .+. .+-+.-+.+-.
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd--~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWD--SDAKKFYYIDSLNYE 181 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccccccccccEEEEecc--CCCceeeehhccCCcccccc--ccCcEEEEEccCceE
Confidence 44667778899999 43322112 22333321 11111121122223455664 233 34455566777
Q ss_pred EEEEEcC--CC-----CceEEecC----CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC
Q 001363 511 IKAWLYD--SL-----GARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 579 (1092)
Q Consensus 511 i~vwd~~--~~-----~~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1092)
|.-||.+ ++ +.+..+.. .......+++..+|+..+++-. .++|...|+.+|+.+..+.-.. .
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~ 254 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---P 254 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---C
Confidence 8778743 22 22222222 1112335666778888777765 5569999999999999988776 8
Q ss_pred ceEEEEEcCC
Q 001363 580 SVSVVHFDTA 589 (1092)
Q Consensus 580 ~v~~~~~~~~ 589 (1092)
.+++++|.-.
T Consensus 255 qitsccFgGk 264 (310)
T KOG4499|consen 255 QITSCCFGGK 264 (310)
T ss_pred ceEEEEecCC
Confidence 8999999754
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.039 Score=53.65 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=70.6
Q ss_pred EEEEE-eCCeEEEEEcCCceee-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc-CCeEEE
Q 001363 816 YLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGL 892 (1092)
Q Consensus 816 ~l~~~-sdg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l 892 (1092)
-+++| ++|.|.+|........ .....-...|-++.-.-+++.+..+++.||.|+.|++.-++.+.....|. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 34444 5899999987622111 11111223333333333356699999999999999999999888888888 667777
Q ss_pred EEcCCCCEEEEE--eCCCcEEEEEcCC
Q 001363 893 VFSDALNILVSS--GGDAQIFVWDVDG 917 (1092)
Q Consensus 893 ~~spdg~~l~s~--s~Dg~I~iwd~~~ 917 (1092)
..+..++.++++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 777777788877 7888888888875
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.47 E-value=8.5 Score=46.53 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=66.8
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceeeEeecc
Q 001363 808 FALSKNDAYLFSASGGVISLYIVMTFKTILTI--MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 884 (1092)
Q Consensus 808 ~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~ 884 (1092)
.|+.|...++.+|-+..+++||+...++++.. +.....|+.+.+. +..+++|...-.|.++..+. ++.+..+..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 46677777888888999999999877766543 3235667777774 55777777666665544332 233444432
Q ss_pred --ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 885 --HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 885 --h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
-...|+++.+- |-..+|.+..=|.+.+-.+..
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 22346666665 455777676666666555543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.04 Score=39.45 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=29.3
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCe
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK 369 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~ 369 (1092)
..|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus 12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 4799999999998 8999999999999998 5543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.073 Score=38.11 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 426 (1092)
...|.+++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999993
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.15 E-value=5.3 Score=48.62 Aligned_cols=204 Identities=13% Similarity=0.106 Sum_probs=118.3
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC--------eEEEEEcC---------------CCCCEEEEEeCCCcEE
Q 001363 813 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL 869 (1092)
Q Consensus 813 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~d~~~lasg~~dg~v~ 869 (1092)
++.++++..++.|.-.|..+|+.+.++...... .+.+++.. ..+..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 454444444688888999999888776543211 12233321 0234788899999999
Q ss_pred EEEcCCceeeEeeccccCCeE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 001363 870 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR 924 (1092)
Q Consensus 870 iwd~~~~~~~~~l~~h~~~V~-------------~l~~sp--dg~~l~s~s~----------Dg~I~iwd~~~~~~~~~~ 924 (1092)
-.|.++|+.+..+. ..+.|. .+.-+| .+..++.++. +|.|+-+|..+|+..-..
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999999887664 222210 111112 1345555542 688999999998854322
Q ss_pred eeecCC-------CCcC--CCCCc-eEEEEccCCCEEEEE-------------------eCCcEEEEEcCCceeeeeecc
Q 001363 925 SLQTPD-------GVMT--LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP 975 (1092)
Q Consensus 925 ~~~~~~-------~~~~--~~~~v-~~l~~s~dg~~la~~-------------------~d~~i~lwd~~~~~~~~~~~~ 975 (1092)
-...+. +..- -...+ ...++.++..++... ..+.|.-.|.++|+..-.+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 111110 0000 00111 234555555554431 123466778888988766544
Q ss_pred CC--------CCCEEEEEEec-CCC---EEEEEECCCcEEEEEcCCCceEEeec
Q 001363 976 IS--------SVPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 976 ~h--------~~~v~~l~fs~-dg~---~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
.| .....-+.+.. ||+ .++.++.+|.+++.|-.+|+.+....
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 33 11122223333 664 78899999999999999999987643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.02 E-value=4.9 Score=41.24 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=112.6
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001363 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
.-...+.|..+|..+-+++.-|.-.+ +.+++.+|+......++. ..--..++...|.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~~---~~FgEGit~~~d~ 101 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLPP---RYFGEGITILGDK 101 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-TT---T--EEEEEEETTE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECCc---cccceeEEEECCE
Confidence 34567888888888888877764333 334556666555555542 2333456666665
Q ss_pred CEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc-----CCe
Q 001363 815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KRV 889 (1092)
Q Consensus 815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~V 889 (1092)
-+.++--++...+||..+.+.+.++.- .+.=..++. |++.|+.......++++|..+-+....+.-.. ..+
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 555566689999999999999988863 356667773 56677777767789999998877665554321 234
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC-------CCCcCCCCCceEEEEccCCCEEEEE
Q 001363 890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-------DGVMTLAPSETHIQFHKDQTRFLLV 954 (1092)
Q Consensus 890 ~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~l~~s~dg~~la~~ 954 (1092)
.-|.|- +|...|=.=....|..-|..+|+.....-+..+ ........-...+|+.|.+..+.+.
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 446664 666666555556677777777765543222111 0111112357899998887766653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.00 E-value=2.5 Score=46.18 Aligned_cols=188 Identities=13% Similarity=0.138 Sum_probs=94.8
Q ss_pred EEecCCCEEEEEe---C----CeEEEEEcCCceeeEEecCCC---CCeEEEEEcCCCCCEEEEEe---------------
Q 001363 809 ALSKNDAYLFSAS---G----GVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGM--------------- 863 (1092)
Q Consensus 809 ~~s~dg~~l~~~s---d----g~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~--------------- 863 (1092)
-.-|+|+.++++- + |.+.+.|-++.+......... ..-..+-+.| ..+.++|..
T Consensus 136 Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 136 HCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTT
T ss_pred eecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhH
Confidence 3446888887762 1 458899998888877765432 2345677788 667777743
Q ss_pred -----CCCcEEEEEcCCceeeEeecccc--CCeEEEEEcCC--CCE-EEEEeCCCcEEEE-EcCCCceeeeeeeecCCCC
Q 001363 864 -----DDSTILIYNARSSEVISKLEGHS--KRVTGLVFSDA--LNI-LVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGV 932 (1092)
Q Consensus 864 -----~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~spd--g~~-l~s~s~Dg~I~iw-d~~~~~~~~~~~~~~~~~~ 932 (1092)
...++.+||+.+.+.++++.--. .....+.|..+ ..+ ++.+.-...|..| .-+.++....+++..+...
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 23489999999999998886422 23556777654 444 3333334444444 4356665555566554321
Q ss_pred c------CC-------CCCceEEEEccCCCEEEEE--eCCcEEEEEcCCce---eeeeeccC-------C--------CC
Q 001363 933 M------TL-------APSETHIQFHKDQTRFLLV--HETHLAIYEAEELT---CLKQWFPI-------S--------SV 979 (1092)
Q Consensus 933 ~------~~-------~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~---~~~~~~~~-------h--------~~ 979 (1092)
. .. .+-|+.+.+|.|.++|.++ ..|.|+.||+.... ...++..+ | .+
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG 374 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence 0 00 2358999999999999986 68999999997543 33222211 0 22
Q ss_pred CEEEEEEecCCCEEEEEE
Q 001363 980 PISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 980 ~v~~l~fs~dg~~l~t~~ 997 (1092)
...-+..|-||+.|...+
T Consensus 375 gPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTSSEEEEE-
T ss_pred CCCeEEEccCCeEEEEEe
Confidence 346678889998887654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.077 Score=62.87 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=75.7
Q ss_pred cEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC
Q 001363 500 HFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 578 (1092)
..++.|+..|.+-..|+...-. ...-....++|++++|+.+|+.++.|-. +|.|.+||..+++..+.+..+....
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~----~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG----DGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC----CCcEEEEEccCCcceeeeeecCCcc
Confidence 4688888889888888765322 1222334568999999999999998865 6779999999999999888777445
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
..+..+.+..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 55666666667777788777775 5543
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.84 E-value=13 Score=45.13 Aligned_cols=122 Identities=12% Similarity=-0.033 Sum_probs=79.4
Q ss_pred EEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC-ceEEeeccc
Q 001363 942 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILST 1019 (1092)
Q Consensus 942 l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~-~~~~~~~~~ 1019 (1092)
.|+.|-..++++|-...+++||+...+.++.....+ ...|+.+.+ .+..+++|...-+|.++..... +.+-.+. .
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-d 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-D 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe-C
Confidence 567777779999999999999999888777655444 566777765 4567777776666665554432 3332332 1
Q ss_pred cccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCccccCCCCCc
Q 001363 1020 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEI 1075 (1092)
Q Consensus 1020 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~ 1075 (1092)
...|.. |.. ++.- |-..+|.|..=|.+.+-.++..-++-+...|.+.
T Consensus 1016 D~~pR~-----Vt~---~~~l-D~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~~ 1062 (1205)
T KOG1898|consen 1016 DPVPRH-----VTA---LELL-DYDTVAGADRFGNIAVVRIPPDVSEEASEDPTEL 1062 (1205)
T ss_pred CCccce-----eeE---EEEe-cCCceeeccccCcEEEEECCCcchhhhccCCccc
Confidence 112211 222 2222 4578999999999999999877766655555553
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.76 E-value=7 Score=43.63 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=79.3
Q ss_pred CCeeEEEEecCCCEEEEEe------------C-CeEEEEEcCC--ce--eeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001363 803 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s------------d-g~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
.....|+|.++|+++++-. . +.|.+++-.+ |+ ....+.........+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 3456899999999887752 1 2677776442 32 2234443344568899998 77 444 4444
Q ss_pred CcEEEEEcCCc-----e--e-eEeecc----ccCCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEE
Q 001363 866 STILIYNARSS-----E--V-ISKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD 914 (1092)
Q Consensus 866 g~v~iwd~~~~-----~--~-~~~l~~----h~~~V~~l~~spdg~~l~s~s~D-------------------g~I~iwd 914 (1092)
...++.|.... + . +..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334344321 1 1 122322 13346789999999988876621 3344444
Q ss_pred cCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
.++++. ..+. .+.. ....++|+++|+++++
T Consensus 171 pdg~~~---e~~a--~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL---RVVA--HGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE---EEEe--cCcC----CCccceECCCCCEEEE
Confidence 444331 1221 2222 3568999999999887
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.72 E-value=12 Score=45.34 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=56.2
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC-ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001363 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1092)
....|..+.++|+|+++|..+...|.|..+.. +.....+.+....|.|=.+.- +..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence 44678999999999999999877777766632 111111222222222222211 11111
Q ss_pred EeeccccCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCC
Q 001363 880 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spd---g~~l~s~s~Dg~I~iwd~~~ 917 (1092)
...+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 0123456777888875 47888888888899998875
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.88 Score=52.95 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=78.1
Q ss_pred ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEc-----
Q 001363 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY----- 516 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~----- 516 (1092)
...-+.-|.-++ ..+.-+....+.|||...+...++-. ...+.|.++.|...++++.+++.+..+.|.++--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555555 44444455689999999887554432 3578899999999999999999999999999843
Q ss_pred CCCCc----eE--EecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 517 DSLGA----RV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 517 ~~~~~----~~--~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
....+ +. .+.. ..++|...+|.++|..++.++. .+.++|..
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECCC
Confidence 11111 11 2222 3367889999999998887643 48888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.061 Score=62.14 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=83.8
Q ss_pred ecccCCCCceEEeec----CCCceEEEEEcCCCcEEEEecC--CCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001363 329 TLIEGSSSPMSMDFH----PVQHTLLLVGTNVGDTGLWDVN--SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~s----pdg~~llasg~~dg~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
.++|..++|-.++|- |.+. .+ -|...|||+. .|+......++ ....-...+.-+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~-~~-----vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR-RL-----VGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLV 186 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH-HH-----hhhhheeehHhhccccccceEEe--------------ecCcCCCCccee
Confidence 345777788888883 4443 12 2778899886 45444332222 123334455666
Q ss_pred EECC---CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEE-----------EecCCCcEEEEEEeCCCcEE
Q 001363 403 VWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-----------FSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 403 ~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~-----------~s~d~~~l~l~s~~~d~~i~ 468 (1092)
.|.| +.-++..+-.+++|++-++.+... . -+.+|...+..++ .||||+ .++.+..||.++
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVG 260 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccc
Confidence 6665 667788888888888877765432 1 2446777666655 488999 899999999888
Q ss_pred EEECC-----CCceeEEEecCC
Q 001363 469 VWDAV-----TGSRTYSFEGHG 485 (1092)
Q Consensus 469 vwd~~-----~~~~~~~~~~~~ 485 (1092)
.|.+- .-+|++..+.|.
T Consensus 261 f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCC
Confidence 88643 335566677776
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.9 Score=51.29 Aligned_cols=154 Identities=8% Similarity=-0.024 Sum_probs=74.4
Q ss_pred CccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--CceeEEEEeCCCCeEEEE
Q 001363 498 NIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 498 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~ 570 (1092)
++.+.+.|+.++ .+..||..+.+-...-..+.......+..-+++..+.||.... ....+..||+.+++....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 456777777652 4666776654322211111111111122345666666663222 125688999887655432
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
-.... ..... ++ ...++..++.|+.+ ..+.+||..+.+....-...........+. -+++.++.|+.
T Consensus 422 ~~~p~-~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCC
Confidence 21111 01111 22 22245555566532 238889988876554322211111111222 36777777765
Q ss_pred C-----CeEEEEECCCCce
Q 001363 643 E-----NRIKILETPESNS 656 (1092)
Q Consensus 643 d-----g~i~iw~~~~~~~ 656 (1092)
+ ..+.+||..+.+.
T Consensus 497 ~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred cCCcccceeEEEeCCCCEE
Confidence 4 4677788776543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.1 Score=53.79 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=62.5
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEEcCC----------C--ceEEeecc-ccccCCCCccccccceEEEECCC--C
Q 001363 978 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILS-TAYLRPTTSCLHVYPHAIAAHPL--K 1042 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~----------~--~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~--d 1042 (1092)
.-.|..+.++++|++|+..|..| |.|-.+.. | ...|+..+ ...+-. .+..+....+.|||. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~--~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT--SNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc--CCCCceEEEEEEcCCCCC
Confidence 56788999999999999988765 55555532 1 22333321 111111 133355568899995 3
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCccccCCC
Q 001363 1043 PTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1072 (1092)
Q Consensus 1043 ~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~ 1072 (1092)
+..|++-+.|+++++||+.+...-|.+.+-
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~~ 190 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQVLSL 190 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeEEEEc
Confidence 578999999999999999887766777653
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.19 Score=49.05 Aligned_cols=106 Identities=12% Similarity=0.053 Sum_probs=63.5
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEE-EEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL-AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
-+..+++|+.+|.|.+|++..-...... ...-...|.++ .-..++. +..+++.|+.|+.|++.-++.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHh--hhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeecccc
Confidence 3567899999999999998732111110 11112233333 2233444 67888999999999999988887776676
Q ss_pred -cCeEEEeecccCCccEEEEE--ecCCeEEEEEcCC
Q 001363 486 -APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS 518 (1092)
Q Consensus 486 -~~v~~i~~~~~~~~~~l~s~--~~dg~i~vwd~~~ 518 (1092)
.++...... ..+.+++.+ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv--~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVV--GSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEe--cCCceEEeeccccchhhhhcchhh
Confidence 444333332 122455555 5566666665543
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.3 Score=51.49 Aligned_cols=122 Identities=8% Similarity=0.086 Sum_probs=76.3
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec-cccCCeEEEEEc--CCCCEEEEEeCCCcEEEEEc
Q 001363 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDV 915 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--pdg~~l~s~s~Dg~I~iwd~ 915 (1092)
+...-..++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|-.+.|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334455555555 45555555555589999999886432221 357889999985 78999999999999999864
Q ss_pred CC----CceeeeeeeecC--CCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEc
Q 001363 916 DG----WGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964 (1092)
Q Consensus 916 ~~----~~~~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~ 964 (1092)
.. ........++.. ..+.+ .+|....|.++|.++++ .++++.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV~-sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVVG-SGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEEE-eCCEEEEECC
Confidence 31 111111122221 12221 36889999999986654 4667888764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.56 E-value=16 Score=41.45 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=42.0
Q ss_pred eEEEEccCCCEEEEEeC--CcEEEEEcCCc--eeeeeeccCCCCCEEEEEEecCCCEEEEEEC
Q 001363 940 THIQFHKDQTRFLLVHE--THLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 940 ~~l~~s~dg~~la~~~d--~~i~lwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
--+||.|....+|++++ +.|.||.+... ..+..+.-....+...++|-.|+-.|+..|.
T Consensus 342 DliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 342 DLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred ceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence 34899999999999655 57999998632 2233333334678888999988877776654
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.54 E-value=8.3 Score=39.12 Aligned_cols=192 Identities=12% Similarity=0.095 Sum_probs=124.0
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001363 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 924 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~ 924 (1092)
.-..++-+| ||..-+++...|.|--.|-.+|+....--+....-..+..-|||..-++-+.. .|.-.|-++.+...
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-- 138 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-- 138 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence 345677888 88888888888888888888888766555555666778888998877764433 45555665555333
Q ss_pred eeecCCCCcCCCCCceEEEEccCCCEEEEEeC----------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEE
Q 001363 925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 994 (1092)
Q Consensus 925 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d----------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 994 (1092)
...+..+.. .......|.++|++-.++.. +.|++|+.. .......|+..|||..-+
T Consensus 139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence 222222222 35788999999999888543 235555543 344567789999999888
Q ss_pred EEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 995 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 995 t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
+.-.+..|..-|..++.. ..+.....+..+ +..+-.+|+ +..-++....+.++.+|....
T Consensus 205 aslagnaiaridp~~~~a-ev~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 205 ASLAGNAIARIDPFAGHA-EVVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred EeccccceEEcccccCCc-ceecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCcccc
Confidence 877788888888777722 222222221111 122345553 567777777777777776543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.46 E-value=3.2 Score=40.83 Aligned_cols=150 Identities=11% Similarity=0.095 Sum_probs=83.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE----eCC---cEEEE-EcC----C
Q 001363 899 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HET---HLAIY-EAE----E 966 (1092)
Q Consensus 899 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~---~i~lw-d~~----~ 966 (1092)
+.|+.+.....|.+|++...+......+.+. +.|..++++.-|++|++- ... .+++| ++. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 3444445667799999995554433333333 258899999999999993 122 46665 222 1
Q ss_pred ceeeeeeccCC---------------------CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce-EEeeccccccCC
Q 001363 967 LTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCRILSTAYLRP 1024 (1092)
Q Consensus 967 ~~~~~~~~~~h---------------------~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~-~~~~~~~~~~~~ 1024 (1092)
...++.-..|| +.++.+++-.|-..-|+.|+ ++.+.+|.+..... ...+....+...
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhh
Confidence 22222212232 44566666666433455454 56899998876655 222222222111
Q ss_pred C-CccccccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1025 T-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1025 ~-~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
. .|...+.+..+++- ++++|.. ++-.+++..+
T Consensus 181 l~~~~~~~~p~~v~ic---~~yiA~~-s~~ev~Vlkl 213 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAIC---EGYIAVM-SDLEVLVLKL 213 (215)
T ss_pred hhheecCceEEEEEEE---eeEEEEe-cCCEEEEEEE
Confidence 1 13334556666666 3566665 5666777665
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=2.4 Score=50.31 Aligned_cols=196 Identities=11% Similarity=0.005 Sum_probs=91.1
Q ss_pred CCCCEEEEEeCCC------EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----CcEEEEECCC
Q 001363 406 PDGSLLGVAYSKH------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVT 474 (1092)
Q Consensus 406 pdg~~las~~~d~------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~ 474 (1092)
.++..++.|+.++ .+..||..+++-.. ...+.........+ .-+++ +++.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~--~~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT--VFNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE--EECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 3556666665432 47788887754321 11111111111222 23555 66667655 3577888877
Q ss_pred CceeEE--EecCCcCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 475 GSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 475 ~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
++-... +....... +++. -++.+.+.|+.+ ..+..||..+.+-...-..+.......+...+++..+.
T Consensus 368 ~~W~~~~~lp~~r~~~-~~~~---~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKWREEPPLIFPRYNP-CVVN---VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CceeeCCCcCcCCccc-eEEE---ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 653321 11111111 1111 144666766632 34777887654322211111111111223345666666
Q ss_pred EecCCCC----ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceE
Q 001363 547 CGTSKEG----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL 613 (1092)
Q Consensus 547 ~~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~ 613 (1092)
||..... -..+.+||+.+++....-.... .......+.+ ++..++.|+.+ +.+.+||..+.+..
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 6543221 2348899988776543221111 1112222222 55566666643 46788888776553
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.3 Score=48.71 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=70.7
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEE---------cCCCc--eEEeeccccccCCCCccccccceEEEECCCC--CC
Q 001363 978 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLK--PT 1044 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d--~~ 1044 (1092)
.-.|..+..|+.|..++-.|.+|.+.++= +++|+ ..|+....+. .--.++.++....++|||+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccCCceeeeeccccCCccCCc
Confidence 45677888899999999999998554432 23343 2333321110 00012345666778999963 46
Q ss_pred EEEEEeCCCcEEEEecCCCCCccccCCCCCcccCCCCCCcccccC
Q 001363 1045 QFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRA 1089 (1092)
Q Consensus 1045 ~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1089 (1092)
.|+.-+.|..|++|++++....|..++|.-..+.-...-+=|+.+
T Consensus 182 hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~Si~sFGe~~ 226 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNVSILSFGEEE 226 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhccCCCcCCCCccceeeccCCcc
Confidence 788889999999999998888888876655444433333444443
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=17 Score=39.90 Aligned_cols=153 Identities=19% Similarity=0.164 Sum_probs=92.3
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEE-EcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001363 802 QEAVPCFALSKNDAYLFSASGGVISLY-IVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iw-d~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1092)
...+.++.+.+++.+++++..|.+..- |- .++.-.. .......++++++.+ +++.+++| ..|.+++=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence 456788999999999988888865532 22 2222222 223446789999999 78777665 4676653234444322
Q ss_pred Eeecc----ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe
Q 001363 880 SKLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 880 ~~l~~----h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
..... -...+.++++.|++..++ ++.+|.|. ...+.++ ....+....+.. .....+.|..+++.++++.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~--tW~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK--TWEKDPVGEEVP---SNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC--CCeECCcCCCCC---cceEEEEEeCCCceEEECC
Confidence 21111 123578899999877655 55677554 4445433 111221111111 2477888888899999999
Q ss_pred CCcEEEEEc
Q 001363 956 ETHLAIYEA 964 (1092)
Q Consensus 956 d~~i~lwd~ 964 (1092)
.|.|--|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 898877763
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.96 E-value=5.5 Score=46.24 Aligned_cols=185 Identities=12% Similarity=0.137 Sum_probs=98.9
Q ss_pred eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe--e--ccccCCeEEEEEcCCCC
Q 001363 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~spdg~ 899 (1092)
.|+||++. |..+..+.-..+.+..+.|+. ..-|++...+|++++|++.. +.+.. . +.....|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 37888874 555555443444888999996 45666788999999999874 32222 1 22233455566665664
Q ss_pred EEEEEeCCCcE-EEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCE--EEEEeC--CcEEEEEcCCceeeeeec
Q 001363 900 ILVSSGGDAQI-FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHE--THLAIYEAEELTCLKQWF 974 (1092)
Q Consensus 900 ~l~s~s~Dg~I-~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~--la~~~d--~~i~lwd~~~~~~~~~~~ 974 (1092)
.+.+. +|.+ .+-+++..... .+...++... .-.+....+++.. +...-+ -...++..+.+......+
T Consensus 141 avlt~--~g~v~~i~~~~~~~~~---~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPKLR---KMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEec--CCcEEEEcCCCcchhh---hCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44443 3333 33333331111 1111111111 1123333333221 111111 011222222221111111
Q ss_pred cCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 975 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 975 ~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
....+.+..+..||+.++|+--..+|.|.+-+.+..+..+.+....
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~ 258 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD 258 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC
Confidence 1113577889999999999999999999999999888888887433
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.89 E-value=3.4 Score=44.75 Aligned_cols=145 Identities=8% Similarity=0.041 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc--e-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001363 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS--E-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 922 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~ 922 (1092)
.+.+-|.. .++.|+ +...|.+.=|-.... . ++..-....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34556654 333333 334455555655432 1 222222356799999999999999999999999999986543222
Q ss_pred eeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001363 923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
........+. ..|....|+.. .-+|...+..+-+|-....+.--.....|...|.-..|.++-+.++-++
T Consensus 103 ~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 103 EYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 1111111111 24888888877 6666666777777776544333333556788888889999887655443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.83 E-value=18 Score=39.91 Aligned_cols=228 Identities=10% Similarity=0.081 Sum_probs=101.3
Q ss_pred CCCEEEEEe-CCCEEEEEEccCCCcc-cceEEEcc---cc----cceeEEEEecCCCcEEEEEE--eC----CCcEEEEE
Q 001363 407 DGSLLGVAY-SKHIVQLYAYHGGSDA-RQQLEIDA---HV----GNVNDLAFSAPCKQISVITC--GD----DKTIKVWD 471 (1092)
Q Consensus 407 dg~~las~~-~d~~i~iwd~~~~~~~-~~~~~~~~---h~----~~v~~~~~s~d~~~l~l~s~--~~----d~~i~vwd 471 (1092)
+.++|+..+ .++.|+|.|+.+.... +..+.+.. +. ..-..+-.-|+|+ +++|+ +. -|-+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~--imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR--IMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS----EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc--EEEEeccCCCCCCCCcEEEEc
Confidence 567888876 6678999999854321 11222221 11 1222344457888 56664 22 34578888
Q ss_pred CCCCceeEEEecCCc-C--eEEEeecccCCccEEEEEe--------------------cCCeEEEEEcCCCCceEEecCC
Q 001363 472 AVTGSRTYSFEGHGA-P--VYSLCPHAKENIHFIFSIS--------------------VDGKIKAWLYDSLGARVDYDAP 528 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~-~--v~~i~~~~~~~~~~l~s~~--------------------~dg~i~vwd~~~~~~~~~~~~~ 528 (1092)
-++-+.......... . -..+-+.+ ..+.++|.. ...++.+||+.+.+.++++...
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred CccccccceeccCCCCCCCCCCeEEcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 777777766644222 1 22333333 334566542 2457999999999988887765
Q ss_pred CC--ceEEEEEcc--CCCEEEEEecCCCCceeEEEEeC-CCCeEE----EEEeecc-----c---------cCCceEEEE
Q 001363 529 GL--GCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNE-SEGAIK----RTYQGLQ-----L---------QHNSVSVVH 585 (1092)
Q Consensus 529 ~~--~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~-~~~~~~----~~~~~~~-----~---------~~~~v~~~~ 585 (1092)
.. -...+.|.. +..+-+++.. -...|..|-. ..++-. ..+.... . -..-++.+.
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~a---Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~ 318 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCA---LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL 318 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE-----EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred CCCCceEEEEecCCCCccceEEEEe---ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence 43 344566644 4444443332 1334555543 333321 1111110 0 013478899
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCC---ceEEEEeCCCCC--------------CCCceEEEccCCCEEEEEe
Q 001363 586 FDTAKDQILAAG-DDHVIKIWDMNKV---QLLTTIDAGGGL--------------PENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 586 ~~~~~~~l~~~s-~dg~i~iwd~~~~---~~~~~~~~~~~~--------------~~v~~v~~s~~~~~l~~~~ 641 (1092)
+|.|.++|+... .+|.|+.||+.+. ++...+...+.. .....+..|-||++|.+.+
T Consensus 319 iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 319 ISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp E-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 999999998765 7899999999763 334333322111 1124567777777776654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=92.77 E-value=14 Score=38.46 Aligned_cols=214 Identities=12% Similarity=0.130 Sum_probs=123.4
Q ss_pred ceeEEEEecCCCcEEEEEEeCCCcEEEEECC------CC-ceeEEEec-----CCcCeEEEeecccC------C----cc
Q 001363 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAKE------N----IH 500 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~------~----~~ 500 (1092)
.-+.++|+|.+. +-++...-+...+||.. .. ..+-++.. .....+.+.|+... + ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999887 67777778889999986 12 22333331 12345555554321 1 12
Q ss_pred EEEEEecCCeEEEEEcCCCCc-----eEEecCC--CCceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeEE--E
Q 001363 501 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP--GLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R 569 (1092)
Q Consensus 501 ~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~--~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~--~ 569 (1092)
.++.+++||+|.-|...-... ...+... ..-...+++.. .+.+|+.+-. ..++|.++|-.-.... .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 478889999999997532222 1222211 22344556554 3567766643 2567888875432221 0
Q ss_pred EEeeccc--cCCc-----------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc----
Q 001363 570 TYQGLQL--QHNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 632 (1092)
Q Consensus 570 ~~~~~~~--~~~~-----------v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 632 (1092)
.+..... .-.+ |+...-.++...=+.|..-|.|-+||. .|+.++++...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 0111000 0000 111111222222333445578999997 578888887666555667777755
Q ss_pred --CCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 001363 633 --NGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 633 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
.+.+|+---.||+|..+|..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 467777777799999999998887766654
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=5.6 Score=46.24 Aligned_cols=184 Identities=11% Similarity=-0.007 Sum_probs=93.6
Q ss_pred CCCEEEEEe-C-----CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcCCce--eeE
Q 001363 813 NDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSE--VIS 880 (1092)
Q Consensus 813 dg~~l~~~s-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~--~~~ 880 (1092)
++.++++|+ + ..+..||..+.+-.. .+.........++ - ++.+.+.|+.++ .+..||..+++ .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455555554 2 246778877654322 2222222222222 3 677888888643 67888876543 222
Q ss_pred eeccccCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCC
Q 001363 881 KLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~ 957 (1092)
.+.........+ .-+|+..+.||.++ .+..||..+++......+..+. -...+..-+|++.+.| |
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--C
Confidence 332111111222 23688888888654 4678888776533322221111 1122334566666665 4
Q ss_pred cEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCce
Q 001363 958 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1012 (1092)
Q Consensus 958 ~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~ 1012 (1092)
.+.+||..+.+-...-...+...-.++ ..-+|+..+.||.+ .++..||..+++.
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNPEL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCccccEE-EEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 577888876654322111111111122 23477888888764 3466777666544
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=92.27 E-value=14 Score=39.44 Aligned_cols=170 Identities=10% Similarity=0.062 Sum_probs=94.4
Q ss_pred eEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCC----CEEEEEe-CCCcEEEEEcCCceeeEeeccc-------
Q 001363 824 VISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAIGM-DDSTILIYNARSSEVISKLEGH------- 885 (1092)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~lasg~-~dg~v~iwd~~~~~~~~~l~~h------- 885 (1092)
+|.+||+.+.+.++++.-+ ......+.+...++ .++..+. ..+-+.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6889999999988876432 34567777765222 2444333 3358999999998754444322
Q ss_pred ------------cCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCceeee-----e----eeecCCCCcCCCCCceE
Q 001363 886 ------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQTC-----R----SLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 886 ------------~~~V~~l~~sp---dg~~l~s~s~Dg~I~iwd~~~~~~~~~-----~----~~~~~~~~~~~~~~v~~ 941 (1092)
.+.+..++.+| |+++|....-.+ -++|.+.+...... . .++.. +... .....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG--SQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccC--CCCce
Confidence 13366677765 666776665444 34555443111110 0 00110 0000 13567
Q ss_pred EEEccCCCEEEE-EeCCcEEEEEcCCce---eeeeecc-CC-CCCEEEEEEec--CCCEEEEEE
Q 001363 942 IQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWFP-IS-SVPISQATFSC--DCRMVFTSF 997 (1092)
Q Consensus 942 l~~s~dg~~la~-~~d~~i~lwd~~~~~---~~~~~~~-~h-~~~v~~l~fs~--dg~~l~t~~ 997 (1092)
++++++|.+..+ ...+.|..|+..+.- ....+.. .. -..+..+.+.+ +|.+.+.+.
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 899999998888 578899999987521 1122121 12 35678888888 777666553
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=92.23 E-value=21 Score=40.00 Aligned_cols=201 Identities=11% Similarity=0.005 Sum_probs=105.2
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCceeeEEecCCC--CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc-
Q 001363 810 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 886 (1092)
Q Consensus 810 ~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~- 886 (1092)
...|++.++...+|.+.-.|..+++.+....... ..+..-.+.. +|+ ++.++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4456776666667888888888887665433221 2333333333 565 6778889999999998999888777555
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe--CCcEEEEEc
Q 001363 887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA 964 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--d~~i~lwd~ 964 (1092)
-.+..-..-.++..++ .+.++.+.-.+-.+++..-.......... .+..-....++...+... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence 1122222222332222 23566666666665543221111110000 011111133444444433 445666677
Q ss_pred CCceeeeeeccCCCCCEE---EEEEec-----CCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 965 EELTCLKQWFPISSVPIS---QATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~---~l~fs~-----dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
.+|.........+...-+ ...... .+.-+..++.++.+.-.+..+|+.+.++..
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 777666542211111100 011111 112235666778888889999999888774
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.02 E-value=4.6 Score=45.11 Aligned_cols=103 Identities=9% Similarity=0.116 Sum_probs=56.6
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEEcCCC--ceeeeeeeecCCCCcCCCCCceEEEEccCCCEEE
Q 001363 887 KRVTGLVFSDALNILVSSG-----------GDA-QIFVWDVDGW--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s-----------~Dg-~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 952 (1092)
.....|+|.++|+++++-. ..+ .|.+++-..+ .......+.. +. .....+++.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--~l----~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--EL----SMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--CC----CCccceeEecCC-EEE
Confidence 3466789999998887653 223 5767765432 2222222221 11 135789999999 555
Q ss_pred EEeCCcEEEE-EcCC-------ceeeeeeccC----CCCCEEEEEEecCCCEEEEEE
Q 001363 953 LVHETHLAIY-EAEE-------LTCLKQWFPI----SSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 953 ~~~d~~i~lw-d~~~-------~~~~~~~~~~----h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
+. ...|..| |... .+.+..-+.. +......++|.|||.+.++-+
T Consensus 87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 43 3445544 4431 1112221211 134477899999998777655
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.53 E-value=7.8 Score=37.57 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=61.1
Q ss_pred CCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeE--EEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC
Q 001363 813 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 887 (1092)
Q Consensus 813 dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 887 (1092)
+|.++.+.+ ...|++||+.+++.+..-.-....+. .+.-. ++.+.+-...+|.-..||..+-+++..+. -.+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 556666665 35699999999988765432221111 11111 33445556778999999999988877765 333
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 888 RVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 888 ~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
.=+.++ .|++-|+.++...+++.-|.++
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHH
Confidence 344444 3666677665555666666554
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=29 Score=38.84 Aligned_cols=150 Identities=8% Similarity=0.024 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee---
Q 001363 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--- 921 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~--- 921 (1092)
...+..++ |+.+++++..-..++-||--... .... ..-...++++.|.+++.+++.+ .+|.+ +|....+..-
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 34456677 77777766543333334332110 1111 2234568999999998887755 56654 4444443211
Q ss_pred eeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeec--cCCCCCEEEEEEecCCCEEEEEECC
Q 001363 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~~~D 999 (1092)
....+...... ..+.++.|.+++..++++..|.+.... ..|+.-.... ..-......+.|.++++.+++| .+
T Consensus 317 ~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~ 390 (398)
T PLN00033 317 DFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND 390 (398)
T ss_pred ceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC
Confidence 11111111111 147899999999999999888776654 3444332222 2224578899998888777755 67
Q ss_pred CcEEEE
Q 001363 1000 GTLSIH 1005 (1092)
Q Consensus 1000 g~i~vw 1005 (1092)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 877654
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.31 Score=56.68 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=101.1
Q ss_pred CeEEEEEcC--CceeeEE-----ecCCCCCeEEEEEcCC--CCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEE
Q 001363 823 GVISLYIVM--TFKTILT-----IMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 893 (1092)
Q Consensus 823 g~i~iwd~~--~~~~~~~-----~~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 893 (1092)
|.+.|||+. .|+.... .......+.-+.|.|. +.-++..+..++++++....+... ..+.+|+..++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 678888875 3433222 2222233344444431 456778888889999877765432 55566887776654
Q ss_pred -----------EcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC---------CEEEE
Q 001363 894 -----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ---------TRFLL 953 (1092)
Q Consensus 894 -----------~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg---------~~la~ 953 (1092)
.||||+.+|.++.||.++.|.+.--.....+++..-+.|.. .+-.|.-|.... .++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence 48999999999999999999876433333334444333332 122222233322 22334
Q ss_pred EeC--CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC------------EEEEEECCCcEEEEEcC
Q 001363 954 VHE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR------------MVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 954 ~~d--~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~------------~l~t~~~Dg~i~vwd~~ 1008 (1092)
+.| ..+++|.....+|+.... ...|..+. -+||+ .+++.+-|++|.+|.-.
T Consensus 310 ttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 433 458999887777762211 12333333 33332 13445667888888533
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=91.21 E-value=36 Score=43.94 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=86.5
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.|-..++.|.-+|+|.++=+ .|+.++.||..++. |... -.....+++.++-.-||+..
T Consensus 360 aH~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lY 417 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLY 417 (1774)
T ss_pred HHHHHhhccccCCCCCeEEe---ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceE
Confidence 46667788888888875322 56778888776542 2210 01123455556666677766
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC------ce--eEEEec
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEG 483 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~------~~--~~~~~~ 483 (1092)
| =+.+ .+-|+..+..-. ..-..|.+...+++|.- .+.++-....+.+|++... ++ .-.+.+
T Consensus 418 A-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d 486 (1774)
T PF11725_consen 418 A-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD 486 (1774)
T ss_pred e-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence 6 2222 234555543111 12235777888999982 3566666667799998754 11 122233
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~ 518 (1092)
-.....++.++ + ..|+.+..+|.+..=++..
T Consensus 487 G~a~A~~VgLs--~--drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 487 GKAQAQSVGLS--N--DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred Cchhhhheeec--C--CeEEEEeCCCCEEeccccc
Confidence 33345566663 2 2688889999888776654
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.13 E-value=6.5 Score=46.50 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=93.7
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEE
Q 001363 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 893 (1092)
Q Consensus 814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 893 (1092)
+.+++++..+.|.||+........ ...++..+...| .. +...|+.+..|. . .|+-.-..+.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p--~--------PHtIN~i~v~ 109 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP--F--------PHTINFIKVG 109 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC--C--------CceeeEEEec
Confidence 788888999999999986432211 011112222222 11 122344333332 1 1221111122
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCc---------ee--eeeeeecCCCCcCCCCCceEEEEc--cCCCEEEEEeCC-cE
Q 001363 894 FSDALNILVSSGGDAQIFVWDVDGWG---------IQ--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET-HL 959 (1092)
Q Consensus 894 ~spdg~~l~s~s~Dg~I~iwd~~~~~---------~~--~~~~~~~~~~~~~~~~~v~~l~~s--~dg~~la~~~d~-~i 959 (1092)
.--+...|+.+.+||.|.+|.++.-- .. .......+.-........+++++. ...++||+++++ .|
T Consensus 110 ~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 110 DLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred ccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceE
Confidence 22345678888888888888653200 00 000000011111112468899998 888999997664 46
Q ss_pred EEEEcCC--ceeeeeeccCCCCCEEEEEEecCC---C---EEEEEECCCcEEEEEcC
Q 001363 960 AIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 960 ~lwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~t~~~Dg~i~vwd~~ 1008 (1092)
.||-... .+....-...|...|-++.|-++. . +|++++-.|.+-+|++.
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 6654433 221111112356778899997754 2 78888899999988873
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=9.5 Score=44.36 Aligned_cols=149 Identities=9% Similarity=-0.022 Sum_probs=73.0
Q ss_pred CccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 498 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 498 ~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
++.+.+.|+.++ .+..||..+.+-...-..+.......+..-+|+..+.||.+.. ...+..||+.+.+-...-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence 556667777543 4677776543222111111111122223446776677665432 3567889988776543211111
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEE
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE 650 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~ 650 (1092)
.......+ .-++...+.| |.+.+||..+.+....-...... ...-+..-+++..++|+.+ ..+..||
T Consensus 397 -~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r--~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 397 -PHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPR--DNPELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred -ccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCc--cccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence 01111222 2244444445 35778998877665433222111 1112222367777877754 3566777
Q ss_pred CCCCc
Q 001363 651 TPESN 655 (1092)
Q Consensus 651 ~~~~~ 655 (1092)
..+++
T Consensus 469 ~~~~~ 473 (480)
T PHA02790 469 NRTYS 473 (480)
T ss_pred CCCCe
Confidence 66553
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=91.02 E-value=22 Score=37.09 Aligned_cols=205 Identities=14% Similarity=0.124 Sum_probs=116.0
Q ss_pred eeEEEEecCCCEEEEEeC-CeEEEEEcC-------CceeeEEecC-----CCCCeEEEEEcCCCCCE------------E
Q 001363 805 VPCFALSKNDAYLFSASG-GVISLYIVM-------TFKTILTIMP-----PSPTATSLAFNPHDNNV------------I 859 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~sd-g~i~iwd~~-------~~~~~~~~~~-----~~~~i~~l~~s~~d~~~------------l 859 (1092)
-..++++|.+.+.++... +...+||.. ...++.++.. .....+.+.|+. ...+ +
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 457999999877766654 889999986 1223334432 123567777764 2223 4
Q ss_pred EEEeCCCcEEEEEcCCcee-----eEeec-cccCCeE-EEEEcCC--CCEE-EEEeCCCcEEEEEcCCCceeeeeeee--
Q 001363 860 AIGMDDSTILIYNARSSEV-----ISKLE-GHSKRVT-GLVFSDA--LNIL-VSSGGDAQIFVWDVDGWGIQTCRSLQ-- 927 (1092)
Q Consensus 860 asg~~dg~v~iwd~~~~~~-----~~~l~-~h~~~V~-~l~~spd--g~~l-~s~s~Dg~I~iwd~~~~~~~~~~~~~-- 927 (1092)
+.+++||+|.=|...-+.. ...+. +-.+.|+ .+++... +.+| ++--..++|.|+|-.-......-...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 5678999999998533221 11222 1123343 4666533 3444 44456788999876542211000000
Q ss_pred -cCCCCcCCCCCceEEEEccCCCEEEE-E-------------eCCcEEEEEcCCceeeeeec-cCCCCCEEEEEEec---
Q 001363 928 -TPDGVMTLAPSETHIQFHKDQTRFLL-V-------------HETHLAIYEAEELTCLKQWF-PISSVPISQATFSC--- 988 (1092)
Q Consensus 928 -~~~~~~~~~~~v~~l~~s~dg~~la~-~-------------~d~~i~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~--- 988 (1092)
.+.+..+ ..+. .-.+++.++ + .-|.|-+||.. |..++++. .+.-...+.|+..|
T Consensus 184 ~iPagyAP-----FnIq-nig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 184 ALPAGYAP-----FNVQ-NLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCCCCCCC-----cceE-EECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence 0111100 0110 012333333 2 23579999985 66666543 23345566777755
Q ss_pred ---CCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001363 989 ---DCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 989 ---dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
.|.+|+---.||+|-.+|..+|+.+..+.
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 57788877789999999999999887776
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=90.76 E-value=29 Score=37.97 Aligned_cols=71 Identities=8% Similarity=-0.060 Sum_probs=36.2
Q ss_pred CccEEEEEecC-----CeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001363 498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 498 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
++.+.+.|+.. ..+..||+.+.+-...-.... ......+...+++..+.++.++.....+..||+.+.+-.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 44566666642 346777776544222111111 122233344566777777654322234678898876643
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.39 E-value=12 Score=33.81 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=68.4
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEE---eeeeeeecccccceeeEeeecCCCCcEEEEEECC-----CCCEE
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSLL 411 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~---~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-----dg~~l 411 (1092)
-.|..... -|++++..|.|.|++......... ..++ +-.-...|++++-.+ +...|
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D~L 67 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRDCL 67 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcCEE
Confidence 34555554 467777889999998765432211 0111 112345777776443 34567
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC---CCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+.|+.. .+..||++....+. .+.-...|.++.+-.- ... +++ .+.+..|.-+|.+..+...+
T Consensus 68 liGt~t-~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~-l~i-vGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 68 LIGTQT-SLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSP-LVI-VGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EEeccc-eEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCc-EEE-ECceEEEEEeCCCCcEEEEE
Confidence 777655 59999999876554 3344566777776321 121 344 44477888888555444443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=34 Score=38.26 Aligned_cols=150 Identities=9% Similarity=0.005 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCce
Q 001363 889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 968 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~ 968 (1092)
...+..++||.+++.+..-..++-||-.... ...+..... ..+.++.|.+++.+++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 4456677888777765443333334432210 112222221 2588999999999999887777544 333443
Q ss_pred -----eeeeeccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCC
Q 001363 969 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus 969 -----~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1042 (1092)
........ -...+..+.|.+|+..+++| ..|.+... .+.|+..........++. .+| .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~-----~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAA-----NLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence 12211111 12458899999888766654 67866654 456655444331122222 244 666664
Q ss_pred CCEEEEEeCCCcEEEE
Q 001363 1043 PTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 1043 ~~~l~~~~~dg~v~~w 1058 (1092)
++...+.+.+|.|.-|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3556666688887655
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=90.21 E-value=35 Score=38.13 Aligned_cols=199 Identities=16% Similarity=0.118 Sum_probs=104.7
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc-CeE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVY 489 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~ 489 (1092)
+.++..+|.|.-.|.+++..+-..... +....+..-.+..+|+ ++.++.++.+...|..+|+.+........ .+.
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 333456777777777776532111011 1112233333344776 77788899999999889999888766551 111
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.-.+ .....+..++.+|.+...+..++.......... ..+..-....++. ++.+... . +..+.-.|..+|.
T Consensus 147 ~~~v---~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G~ 220 (370)
T COG1520 147 SPPV---VGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDGT 220 (370)
T ss_pred cCcE---EcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCCc
Confidence 1111 112244444467888877777777666543322 1111111122333 3333221 1 3357777887887
Q ss_pred EEEEEeeccccC-CceEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 567 IKRTYQGLQLQH-NSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 567 ~~~~~~~~~~~~-~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
..-......... ..+........ +..++.++.++.+...|..+++.+......
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 766543222000 00100001001 223456777888999999999999888754
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=90.17 E-value=38 Score=38.43 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=41.8
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
++...-+..+.|+|.|||+ +|++--..|.|++++..++.......+ ..............|+|+|+-
T Consensus 24 ~va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 3344445889999999997 677654469999998665543211111 000011136778899999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.14 E-value=20 Score=41.90 Aligned_cols=164 Identities=12% Similarity=0.139 Sum_probs=78.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccce-EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
.+..+.|+.+..+|+ ...+|++++|++.... +... .-.......|..+.|..+|= .+.+ .+|.+.+-+-....
T Consensus 85 ~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt--~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELIC-VQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLT--VSGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEEE-EeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEe--cCCcEEEEcCCCcc
Confidence 888999997766555 5699999999987532 2210 00122333466666666553 3333 34444443312221
Q ss_pred eeEEEec-CCcCeEEEeecccCC---ccEEEEEe-cCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 477 RTYSFEG-HGAPVYSLCPHAKEN---IHFIFSIS-VDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 477 ~~~~~~~-~~~~v~~i~~~~~~~---~~~l~s~~-~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.++++.. ........+|....+ ...++-.. ..+ ..++...... ....+......+..+++||+.++|+.-..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence 2222221 111111112211111 11111111 000 0111111111 12223333457788999999999988765
Q ss_pred CCCceeEEEEeCCCCeEEEEEe
Q 001363 551 KEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
.|.|.+-+....+....+.
T Consensus 237 ---~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 237 ---TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ---CCcEEEEecchhhhhhccC
Confidence 4557777766666655555
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=90.11 E-value=28 Score=37.05 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=88.8
Q ss_pred cEEEEECCCCceeEEEecC------CcCeEEEeecccCC----ccEEEEEecCCeEEEEEcCCCCceEEecCCC------
Q 001363 466 TIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------ 529 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------ 529 (1092)
.|.+||+.+++.++++.-. ...++.+.+...+. +...++-+..+-|.|+|+.+++.........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6888999999988777532 34566777655332 2334444555689999998876544332211
Q ss_pred -------------CceEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCC-----Ce---------EEEEEeeccccCC
Q 001363 530 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN 579 (1092)
Q Consensus 530 -------------~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~-----~~---------~~~~~~~~~~~~~ 579 (1092)
..+..++.+| +|+.|+.....+ -.+|.+.+ .. .++.+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 1245556654 666666554322 12222111 00 11111 221 13
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceEEEEe-CCCCCCCCceEEEcc--CCCEEEEE
Q 001363 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTID-AGGGLPENPRICFNK--NGTLLAVI 640 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~-~~~~~~~v~~v~~s~--~~~~l~~~ 640 (1092)
....++++++|..+++--..+.|..|+..+. +....+. .......+..+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 5667888999888888889999999998861 1222222 222133456777777 55544433
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.03 E-value=17 Score=45.50 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=96.5
Q ss_pred eCCCcEEEEEcCCceeeEeeccccCCeEEEEE--------cCCCCEEEEEeCCCcEEEEEcCCCceeeeee-eecCCCCc
Q 001363 863 MDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCRS-LQTPDGVM 933 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--------spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~~~ 933 (1092)
+-|+.+.+|+.+++.....+.+-+..|..+.. -|.=++|...+.--.|.|+-+.-.+...... ....-...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999998878888877777777654 2333555555556667777655433221110 00000000
Q ss_pred CCCCCceEEEEccCCCEEEEEeCCcEEE--EEcCCc---e-ee----------------eeeccCCCCCEEEEEEecCCC
Q 001363 934 TLAPSETHIQFHKDQTRFLLVHETHLAI--YEAEEL---T-CL----------------KQWFPISSVPISQATFSCDCR 991 (1092)
Q Consensus 934 ~~~~~v~~l~~s~dg~~la~~~d~~i~l--wd~~~~---~-~~----------------~~~~~~h~~~v~~l~fs~dg~ 991 (1092)
..+..|.++....+|+.+.+|.||.|+= |....| + |. ..+...+..+|..++....-.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 1113588899899999999999985442 222221 1 10 111124577999999988888
Q ss_pred EEEEEECCCcEEEEEcCC-CceEEee
Q 001363 992 MVFTSFVDGTLSIHEASN-LEVQCRI 1016 (1092)
Q Consensus 992 ~l~t~~~Dg~i~vwd~~~-~~~~~~~ 1016 (1092)
.|.+-+..|+|++|++.. |....++
T Consensus 256 IlY~lsek~~v~~Y~i~~~G~~~~r~ 281 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGNGLGGPRF 281 (1311)
T ss_pred eeeeeccCceEEEEEccCCCccceee
Confidence 899999999999999987 5444333
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.91 Score=31.49 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=26.6
Q ss_pred CCceEEeecCCCc--eEEEEEcCCCcEEEEecCCC
Q 001363 335 SSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSG 367 (1092)
Q Consensus 335 ~~V~~v~~spdg~--~llasg~~dg~i~iwd~~~~ 367 (1092)
+.|.++.|||+.. .||+..-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999997543 47888878899999999864
|
It contains a characteristic DLL sequence motif. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=89.67 E-value=62 Score=40.18 Aligned_cols=174 Identities=15% Similarity=0.152 Sum_probs=103.3
Q ss_pred CCCCeeEEEEe---c----CCCEEEEEeCCeEEEEEcCCc---------------eeeEEecC---CCCCeEEEEEcCCC
Q 001363 801 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD 855 (1092)
Q Consensus 801 ~~~~v~~~~~s---~----dg~~l~~~sdg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d 855 (1092)
...+|..|+|+ . ..++|++-....+.|+...-. ..+..+.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 45678888887 2 235788777778888772211 12223321 12355678888877
Q ss_pred CCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001363 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
...+|+....|...||++..+... +.. . +-+.....|.| +.|...-
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~~-~----------~~~~~~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KSS-N----------LRLSRNISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CCc-c----------eeeccCCCccc-cCCCccc-----------------
Confidence 778888888888888888221100 000 1 11112222333 2222210
Q ss_pred CCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeee-eeccCCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCC
Q 001363 936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~-~~~~~h~~~v~~l~fs~dg-~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
..-..+.|.++-..|++.+...+.++|+.+..... .........|..+.-+++. .+++.- ....|...++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 12457889999899999888999999998776643 2233346788888888872 233222 2356888888773
|
These proteins are found in fungi. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=33 Score=38.42 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=18.7
Q ss_pred EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
+.+||.++.+....-..+.. .....+..-+++++++|+.
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~ 352 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGE 352 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCC
Confidence 45788877654322222111 1122233345667777765
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.56 E-value=3.3 Score=50.12 Aligned_cols=147 Identities=11% Similarity=0.037 Sum_probs=90.3
Q ss_pred ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-----EEEec----CC--cCeEEEeecccCCccEEEEEecCCeE
Q 001363 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEG----HG--APVYSLCPHAKENIHFIFSISVDGKI 511 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-----~~~~~----~~--~~v~~i~~~~~~~~~~l~s~~~dg~i 511 (1092)
+|..+..++|+....++..+.+-.|..+|+++-..- .-+.. .. ....++.|+|... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566777778877545555566557889998743211 11111 11 2234455655433 245667788888
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc-CCceEEEEEcCCC
Q 001363 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAK 590 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~ 590 (1092)
++..+........--.-....++++|+|.|+.++.+-. .+++.-|.. +++....+.+.... ...|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeec-ccceeecccCCCcCCCcceeEEEEecce
Confidence 88766544333332233456899999999999999864 556766654 34444555444322 3679999998877
Q ss_pred CEEEE
Q 001363 591 DQILA 595 (1092)
Q Consensus 591 ~~l~~ 595 (1092)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 76665
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.43 E-value=13 Score=41.03 Aligned_cols=150 Identities=9% Similarity=0.097 Sum_probs=92.2
Q ss_pred EEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccC------CccEEEEEecCCeEEEEEcCCC
Q 001363 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSL 519 (1092)
Q Consensus 446 ~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~------~~~~l~s~~~dg~i~vwd~~~~ 519 (1092)
.+-...+.+.+++..|+....++--|++.|+.+..+..|...| +.+.|.. +.+.|+-.+ +..|.-.|.+..
T Consensus 471 K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~ 547 (776)
T COG5167 471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRAR 547 (776)
T ss_pred hceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEeccccc
Confidence 3334444444567778888889999999999999998887764 3343321 223455444 444444565544
Q ss_pred CceEEecCCCC-----ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE
Q 001363 520 GARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1092)
Q Consensus 520 ~~~~~~~~~~~-----~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1092)
........... ...+..- ...-++++++..++ |++||.-.......+.+.. ..|..+..+.+|.+++
T Consensus 548 gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~il 619 (776)
T COG5167 548 GNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHIL 619 (776)
T ss_pred CCceeeeeehhcccccccccccc-ccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcEEE
Confidence 43222211111 1222222 23457888876443 9999976666656666655 7899999999999998
Q ss_pred EEeCCCcEEEEEC
Q 001363 595 AAGDDHVIKIWDM 607 (1092)
Q Consensus 595 ~~s~dg~i~iwd~ 607 (1092)
+.+. ..+.+-|+
T Consensus 620 aTCk-~yllL~d~ 631 (776)
T COG5167 620 ATCK-NYLLLTDV 631 (776)
T ss_pred Eeec-ceEEEEec
Confidence 8775 34555554
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.30 E-value=2.1 Score=46.19 Aligned_cols=122 Identities=11% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
+++|.++.||+|.+ ++|+--.+++|.+.+....+.......+ ....+..|....|+.. .-+|.
T Consensus 66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~---------------ck~k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQE---------------CKTKNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHH---------------hccCcceeEEEEEecC-eeEEE
Confidence 45999999999998 8999999999999998554433221111 2224456888899865 67777
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
....| +.+|-+...+ +.....+.|...|..-.|.++.+-.+|+|+-..+++.=+-+.++
T Consensus 129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 77776 7788776432 22224557888999999999988533344324444443444433
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.12 E-value=46 Score=37.87 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=48.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
...+|.++.+...|.+ -+|+.|| +..||..+++.++.. ......+|.++.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~l-WvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRL-WVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcE-EEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 3468889999888854 4567787 788888887655421 112335677777777777 67777555 67777555
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.09 E-value=1.4 Score=30.57 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=26.5
Q ss_pred CcEEEEEECCC-C--CEEEEEeCCCEEEEEEccCC
Q 001363 397 VSVNRVVWSPD-G--SLLGVAYSKHIVQLYAYHGG 428 (1092)
Q Consensus 397 ~~V~~l~~spd-g--~~las~~~d~~i~iwd~~~~ 428 (1092)
+.|.+++|||+ + .+|+.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46889999984 4 58888888899999999863
|
It contains a characteristic DLL sequence motif. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.86 E-value=24 Score=34.38 Aligned_cols=175 Identities=15% Similarity=0.087 Sum_probs=94.6
Q ss_pred EEEEEeCC--CcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001363 457 SVITCGDD--KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 457 ~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 534 (1092)
++.+.+.- ..|++||+.+|+.+.+-.-....+..=-....+| .+-.-.=.+|.-..+|.++.++.-.+...+.. .
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-W- 134 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-W- 134 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCcc-e-
Confidence 56666543 3699999999998866543211111111100111 22333446777788888887776655444322 2
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc--ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
....|++.|+.+ ++..+++.-|+.+-....++.... .....++-+.|- +|...+-.-.+..|...+.++|+.
T Consensus 135 -gLt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 135 -GLTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred -eeecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 234566666665 346678888887665544433221 001222333332 344444444555666677788877
Q ss_pred EEEEeCCC----------CCCCCceEEEccCCCEEEEE
Q 001363 613 LTTIDAGG----------GLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 613 ~~~~~~~~----------~~~~v~~v~~s~~~~~l~~~ 640 (1092)
+..+...+ +....+.+++.|++..+...
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 76665331 12235678898877444433
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.85 E-value=5 Score=49.75 Aligned_cols=172 Identities=14% Similarity=0.184 Sum_probs=101.0
Q ss_pred cccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001363 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
.+..+|+..+..+. |...-+.+-+-|.=.+ |--+.|+.+.+|+.+++..... +.+-..
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh 120 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH 120 (1311)
T ss_pred ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence 45667776666655 4434445555554433 3335789999999999665432 233344
Q ss_pred cEEEEE--------ECCCCCEEEEEeCCCEEEEEEccCCCcccce------EEEcccccceeEEEEecCCCcEEEEEEeC
Q 001363 398 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1092)
Q Consensus 398 ~V~~l~--------~spdg~~las~~~d~~i~iwd~~~~~~~~~~------~~~~~h~~~v~~~~~s~d~~~l~l~s~~~ 463 (1092)
.|..|. |-|.=++|++...--.|.|+-+.-.+.-... ..+....-.|+|+....+|+ ++. +|.
T Consensus 121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~ 197 (1311)
T KOG1900|consen 121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGR 197 (1311)
T ss_pred hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eec
Confidence 444443 3444566666656666777766533221111 11222244688999888898 454 555
Q ss_pred CCcEEEEEC----CCC---c-e----------------eEEEe-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001363 464 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1092)
Q Consensus 464 d~~i~vwd~----~~~---~-~----------------~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~ 518 (1092)
|| .+|.+ ..| + + +-.+. .+..+|..+.+.. .-.++.+-+..|+|.+||+..
T Consensus 198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 66 44432 111 1 1 11222 4567888888843 346888999999999999875
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.51 E-value=26 Score=34.75 Aligned_cols=146 Identities=12% Similarity=0.142 Sum_probs=85.9
Q ss_pred CEEEEEeCCCcEEEEEcC--CceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC------cEEEE---EcCCCceeeeee
Q 001363 857 NVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------QIFVW---DVDGWGIQTCRS 925 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg------~I~iw---d~~~~~~~~~~~ 925 (1092)
..|..+.....|.+|++. ..+.+.++.. -+.|..++++..|++|+|-=.+. .+|+| +....+.... .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v-~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV-R 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE-E
Confidence 455455667789999998 3456677763 47899999999999999864322 45553 3331110000 0
Q ss_pred eecCCCC------------------cCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCcee-ee-----ee---ccCC-
Q 001363 926 LQTPDGV------------------MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-LK-----QW---FPIS- 977 (1092)
Q Consensus 926 ~~~~~~~------------------~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~-~~-----~~---~~~h- 977 (1092)
.+. -|| .+....+.+++.-|-..-|++|.++.+.+|.+..... .. .+ ...|
T Consensus 107 vRi-aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 VRI-AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEE-cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 000 010 0111356788888877778888899999998764433 11 00 1112
Q ss_pred -CCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 978 -SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 978 -~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
+-.+..++|. +.|+|..+ +-.+++..+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 3334555554 55888665 5567777653
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.41 E-value=51 Score=37.51 Aligned_cols=272 Identities=16% Similarity=0.088 Sum_probs=133.6
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|.++.+.-.|. +-.|+.|| +..+|..+|+.+....- ....+|.++.-+-.| .|.+|+
T Consensus 166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg-~LWVGT 223 (671)
T COG3292 166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQG-RLWVGT 223 (671)
T ss_pred cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcC-cEEEEe
Confidence 788999999997 34555655 66778777776642110 011355555555444 466677
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-cCC--cCeEEEe
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHG--APVYSLC 492 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~--~~v~~i~ 492 (1092)
.+| |.+.+.++.+.... -..-..+.|..+.=..+|. +-.|+..|..+. ....+....... -|. ..|+++.
T Consensus 224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLW 296 (671)
T ss_pred ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccccccee
Confidence 777 88877766321110 0011233454444444444 444554543322 323332222221 121 2233333
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001363 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
. +.+| -|-+++.+|.+++-+-+-..........+..+...+.+| .+..+-.... .+.+.+-+..+|..++.
T Consensus 297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s 369 (671)
T COG3292 297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS 369 (671)
T ss_pred e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence 2 3333 456666676666543221111111111111111122222 1111111111 22355666677777776
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
..... ...|+.+++..+ ..+-.|+...-+..|+.++ +......... ..+.|..+.=.|+++ |..|+.+|-++.
T Consensus 370 v~q~R--g~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 370 VHQLR--GMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred eeecc--ccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence 54433 356777777764 4566666664566677666 3333333222 234577777788887 778888776543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.36 E-value=36 Score=37.23 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=85.3
Q ss_pred CCCCeeEEEEec-CCCEEEEEeCCe------EEEEEcCC--c--eee-----EEecCCCC--------CeEEEEEcCCCC
Q 001363 801 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN 856 (1092)
Q Consensus 801 ~~~~v~~~~~s~-dg~~l~~~sdg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~d~ 856 (1092)
.-+.++.+.+.+ ++.+++...+|. +..+++.. + ..+ ..+....+ ..-++++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 345678889985 555555554455 55444432 1 111 11222221 344788866 78
Q ss_pred CEEEEEeCC------CcEEEEEcCCceeeEeec---------------cccCCeEEEEEcCCCCEEEEEeC-----CC--
Q 001363 857 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA-- 908 (1092)
Q Consensus 857 ~~lasg~~d------g~v~iwd~~~~~~~~~l~---------------~h~~~V~~l~~spdg~~l~s~s~-----Dg-- 908 (1092)
.++++.-.+ ..|+.++.. |+.+..+. ..+....+|+++|||+.|.++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888876666 788888876 65544331 13456889999999997766543 22
Q ss_pred c-------EEEEEcCCCc---eeeeeeeecCCC-CcCCCCCceEEEEccCCCEEEE
Q 001363 909 Q-------IFVWDVDGWG---IQTCRSLQTPDG-VMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 909 ~-------I~iwd~~~~~---~~~~~~~~~~~~-~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
. ++|+...... ...........- .......+..+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 5665554321 111122222210 0001136889999999998887
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.69 E-value=47 Score=36.29 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=90.9
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCc------EEEEEcCC--c--eee-----EeeccccC--------CeEEEEEcCCCC
Q 001363 843 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EVI-----SKLEGHSK--------RVTGLVFSDALN 899 (1092)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~spdg~ 899 (1092)
-+.+..+++.+ ++..+++.+.+|. +..+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35678889987 3445555677777 66665543 1 111 11111111 344788888888
Q ss_pred EEEEEeCC------CcEEEEEcCCCceeeeeeeecCC-------CCcCCCCCceEEEEccCCCEEEEE------eCC--c
Q 001363 900 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET--H 958 (1092)
Q Consensus 900 ~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~s~dg~~la~~------~d~--~ 958 (1092)
++++.=.+ ..|..++.. +.......+...- ..........+++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88877666 678778766 3332211111110 112233578999999999955442 222 1
Q ss_pred -------EEE--EEcCC-ceeeeee---ccC-----CCCCEEEEEEecCCCEEEEEE-----CCCcEEEEEcC
Q 001363 959 -------LAI--YEAEE-LTCLKQW---FPI-----SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1008 (1092)
Q Consensus 959 -------i~l--wd~~~-~~~~~~~---~~~-----h~~~v~~l~fs~dg~~l~t~~-----~Dg~i~vwd~~ 1008 (1092)
+++ ||..+ ++....+ ... ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45444 3222221 111 357889999999999777421 23456666554
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=87.65 E-value=41 Score=43.55 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=80.0
Q ss_pred EeCCCcEEEEEcCCce-------eeEee---------ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001363 862 GMDDSTILIYNARSSE-------VISKL---------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 925 (1092)
Q Consensus 862 g~~dg~v~iwd~~~~~-------~~~~l---------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 925 (1092)
|-.||.|.-||-.+.. -+..| .-..+.|..+.+++...-++-+ .+..+.+=-.. .+......
T Consensus 619 ~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g-~~~~~a~~~~r-~~~e~G~~ 696 (1774)
T PF11725_consen 619 GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHG-DNNVFALPQRR-NKVELGDA 696 (1774)
T ss_pred eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccC-CCccccccccc-CCCCCCcc
Confidence 4567999999976521 11111 1134667777777765555433 22222210000 11111123
Q ss_pred eecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 001363 926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~v 1004 (1092)
+...+ ...|+++|+-.+.++++....|.+.... ..+..+..-..+-.+.|..++......+.+ -..+|.++-
T Consensus 697 l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~ 768 (1774)
T PF11725_consen 697 LEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR 768 (1774)
T ss_pred ccCCC-----cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence 33333 1368999999999999998889999988 667665554555689999999988765444 556776553
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.59 E-value=48 Score=36.24 Aligned_cols=111 Identities=8% Similarity=-0.029 Sum_probs=55.2
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCcee-eeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe------CCcEEEEEc
Q 001363 897 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA 964 (1092)
Q Consensus 897 dg~~l~s~s~Dg-----~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~------d~~i~lwd~ 964 (1092)
++++++.|+.++ .+..+|+.+.+.. ....+...... .-...+..-++++.+.+. ...+..||.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 566777777643 4666677664421 11111111111 011122233566666542 135888898
Q ss_pred CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCc----EEEEEcCCCce
Q 001363 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEV 1012 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~----i~vwd~~~~~~ 1012 (1092)
.+.+-...-......+....+...++++.+.|+.++. +..||..+...
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 7665432210111122233334567888888887643 56788877654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=87.28 E-value=1.9 Score=29.47 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=22.2
Q ss_pred cCCCCceEEeecCCCceEEEEEcCC--CcEEEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW 362 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d--g~i~iw 362 (1092)
.....-.+.+|||||++++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3345778899999999888787777 666665
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=87.22 E-value=12 Score=38.20 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=83.4
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC---CeEEEEEeeccccCCceEEEEEcC
Q 001363 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
.+||+.+.+...........+.+-++-+||+.+.+++. .++...+++++..+ ..........-.....-.+...-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46888776654433333334445567899999988875 44667788888765 111111111011123444556678
Q ss_pred CCCEEEEEeCCC-cEEEEECCC-CceEEEE---eC---CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeec
Q 001363 589 AKDQILAAGDDH-VIKIWDMNK-VQLLTTI---DA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 589 ~~~~l~~~s~dg-~i~iwd~~~-~~~~~~~---~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1092)
||+.++.|+... +..+|.... ......+ .. ......-..+...|+|++++.+..+ -.|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 999999987664 345555422 1111111 10 1111223467788999999988765 456688877665555
Q ss_pred cc
Q 001363 661 GV 662 (1092)
Q Consensus 661 ~~ 662 (1092)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 43
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=87.14 E-value=94 Score=39.17 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=18.5
Q ss_pred ccccEEEEEEecCCcEEEEeecCCe
Q 001363 733 KANKISRLTYNNGGQAIFALASNGV 757 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~ 757 (1092)
+-+.+.+++++|||..+++-..+-.
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~r 684 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSR 684 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchh
Confidence 5677889999999997666555433
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.92 E-value=9.4 Score=48.17 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=44.1
Q ss_pred ceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce
Q 001363 939 ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 939 v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
+.+..+...+..+.....+.+-+|+.........+...+... +.++..++++-.||.+.+||...|..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 201 SLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence 444444445555555555666666655444433333222211 88999999999999999999999866
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.78 E-value=0.13 Score=55.53 Aligned_cols=242 Identities=16% Similarity=0.117 Sum_probs=137.1
Q ss_pred EEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE
Q 001363 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 818 (1092)
Q Consensus 739 ~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~ 818 (1092)
...+.+.+.-++.++.+..+..||-.... .... ........+++..++..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence 45566777668888887777776632211 1111 1233445677777777776
Q ss_pred EEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcC
Q 001363 819 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896 (1092)
Q Consensus 819 ~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp 896 (1092)
... .+.+.+||+.+....+--.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|...++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 665 58899999975432211111111122278999 889999999999999999988776666655999999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCC---ceEEEEccCCCEEEEEeCCcEEEE--Ec--CCcee
Q 001363 897 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS---ETHIQFHKDQTRFLLVHETHLAIY--EA--EELTC 969 (1092)
Q Consensus 897 dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~---v~~l~~s~dg~~la~~~d~~i~lw--d~--~~~~~ 969 (1092)
.+ +.+.++.|..+.+-...+..... ....+... ... +..=.|..-|..+...-.+.+.+. .+ ..+ +
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta~l----tevggepd-nm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~-p 242 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETASL----TEVGGEPD-NMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE-P 242 (615)
T ss_pred cc-eeeecCcHHHHHHhhhccceeee----eeccCccc-hhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC-c
Confidence 75 55667777665544433321111 00111110 000 111123333444444222221111 11 111 1
Q ss_pred eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001363 970 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 970 ~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
....+....+.+.++.|--||. |.-+-.-|.|..-.+.++++...|.
T Consensus 243 val~fq~~~gni~cyrwylDg~-i~igf~ag~iV~iS~h~aeLgaeff 289 (615)
T KOG2247|consen 243 VALQFQEKYGNIHCYRWYLDGY-ILIGFDAGYIVSISAHNAELGAEFF 289 (615)
T ss_pred cceEeeecCCceeEEEEecccc-ccccccceeEEEEeccchHHHHHHH
Confidence 1112223366788888888885 4446666777777788887765554
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.73 E-value=16 Score=40.37 Aligned_cols=142 Identities=15% Similarity=0.222 Sum_probs=87.8
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC-------CCCEEEEEeCCCcEEEEEcCC-ceeeEe
Q 001363 812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNARS-SEVISK 881 (1092)
Q Consensus 812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~lasg~~dg~v~iwd~~~-~~~~~~ 881 (1092)
.|..++..-+ ...++-.|++.|+.+.....|... -+.|.|. +.+.|+ |-.+..|.-.|.+- |..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 3444444443 266888899999999888877655 4666662 223444 55555555555432 322222
Q ss_pred eccccCCeEEEEEc----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCC
Q 001363 882 LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957 (1092)
Q Consensus 882 l~~h~~~V~~l~~s----pdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~ 957 (1092)
.. ....++.-.|| ....++|.+|.-|.|++||--...... .+.. .+..|..+..+.+|+++++....
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--alP~------lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--ALPG------LGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--cCcc------cccceeeeEeecCCcEEEEeecc
Confidence 11 12223333333 245699999999999999976522111 1111 22468899999999999998888
Q ss_pred cEEEEEcC
Q 001363 958 HLAIYEAE 965 (1092)
Q Consensus 958 ~i~lwd~~ 965 (1092)
.+.+.|+.
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 88888875
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=86.59 E-value=74 Score=37.40 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=61.7
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCc--eEEecCC-CCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAP-GLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~-~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
..++..++.+..+|.+....+..... ....-+. .....++++-.+| .+++.++.. +++.+..|....-+.+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~--gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF--GDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS--S-EEEEEEESESEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec--CCcEEEEEeCCCcEEEEec
Confidence 45667899999999998877665442 1222112 3345566665555 467777664 4688888887666777777
Q ss_pred eeccccCCceEEEEEcCC----CC------EEEEEe---CCCcEEEEE
Q 001363 572 QGLQLQHNSVSVVHFDTA----KD------QILAAG---DDHVIKIWD 606 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~----~~------~l~~~s---~dg~i~iwd 606 (1092)
... ++|..+++.+. .. .+++++ .+|.+++..
T Consensus 297 ~N~----~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 297 PNW----GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp --------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred cCc----CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 664 48888887532 22 566654 566777764
|
... |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.49 E-value=46 Score=39.24 Aligned_cols=476 Identities=9% Similarity=0.007 Sum_probs=0.0
Q ss_pred eecccCCCCceEEeecCCCceEEEEE---cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeec------CCCCc
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVG---TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR------DPGVS 398 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg---~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~------~h~~~ 398 (1092)
.++..-++.+-.++|..-+.++.+++ +.|..|.|.......-.. ....|....+. .|-+.
T Consensus 10 ~~fpt~sg~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~~d~s-----------~l~~F~ip~f~dkl~s~~hf~~ 78 (1243)
T COG5290 10 STFPTASGDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSIYDES-----------GLKRFEIPFFPDKLLSFKHFHV 78 (1243)
T ss_pred ccCCCCCCChHHhcccccCceEEEEeecCCCCCCeeeeeeccccchh-----------heeEeccCCcchHhhhhhhhhh
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
++.+.|+-++--++..-.|.+ ....... ....-...|.+.+||.|.+ .++....+..|.+++ ..-.++
T Consensus 79 ~~~~~f~~~~gDii~~~~dp~------p~e~~~e---ivG~v~nGIvaa~wS~DE~--~~cvvt~~r~il~~~-k~fd~i 146 (1243)
T COG5290 79 LTFEYFLIDEGDIIHLVNDPT------PAELEME---IVGKVSNGIVAASWSADEK--TWCVVTSTREILLFD-KYFDPI 146 (1243)
T ss_pred hheeeEEecCCcEEEEEcCCC------cccchhh---hhccccCceEEEeeccCCc--eEEEEEcCceEEEEe-cccccc
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecC------------------------CeEEEEEcCCCCceEEecCCCCceEE
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVD------------------------GKIKAWLYDSLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~i~~ 534 (1092)
....-......-+ ..-++.+.. ..=.+.++++.+..
T Consensus 147 se~~L~~~dl~ef--------~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~------------ 206 (1243)
T COG5290 147 SEYHLKKSDLVEF--------GKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKI------------ 206 (1243)
T ss_pred chhhcchhHHHHh--------ccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceE------------
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-----EEEEECCC
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNK 609 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-----i~iwd~~~ 609 (1092)
++|-.|..+.+.+.........+++|. +.|++-..-.... +.-..+.|-|.|..+++-+.||. |.++..+.
T Consensus 207 i~wrgD~~y~~v~r~Ee~prra~rvys-reg~lds~sep~~---g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG 282 (1243)
T COG5290 207 IFWRGDTEYNLVGRSEERPRRAFRVYS-REGQLDSASEPVT---GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG 282 (1243)
T ss_pred EEEccCcceeeecchhcccccceeeec-cccccccccCCcc---cchhccccccCCceeeeeccCCCCCcceEEEEccCC
Q ss_pred ---CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCC
Q 001363 610 ---VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 610 ---~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
|+.-........ +..++|+-....++++.. +.+.+|-..+-...-.....-..+.-+.|.|
T Consensus 283 LrHGef~lr~~~dEk---~~~~~wn~~s~vlav~~~-n~~~lwttkNyhWYLK~e~~ip~~s~vkwhp------------ 346 (1243)
T COG5290 283 LRHGEFDLRVGCDEK---AFLENWNLLSTVLAVAEG-NLLKLWTTKNYHWYLKVERQIPGISYVKWHP------------ 346 (1243)
T ss_pred cccCCccccCCchhh---hhhhhhhHHHHHHHHhhc-ceEEEEEccceEEEEEEeecCCCcceeeecc------------
Q ss_pred ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001363 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~ 766 (1092)
..+...+++++. .|..+.|+..-..-.+......-..+-++..
T Consensus 347 --------e~~nTl~f~d~~-----------------------------~I~~V~f~~k~~~~~s~~p~d~g~~~ViDGs 389 (1243)
T COG5290 347 --------EEKNTLLFRDGE-----------------------------RILRVFFSEKKTHHGSEYPFDNGTSYVIDGS 389 (1243)
T ss_pred --------ccCcEEEEecCC-----------------------------eEEEEEeehhhhcCCcccCccCCceEEEcCc
Q ss_pred CcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCC--
Q 001363 767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP-- 844 (1092)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~-- 844 (1092)
......-.....++.++...-+. ...|..++.+-..+..+...+..+..+.+.+.+.+........
T Consensus 390 ~~l~Tplsl~n~PPPm~~~~~~~------------d~NV~dv~~s~~~~~~aa~~~drli~f~~~s~e~i~k~~ef~~se 457 (1243)
T COG5290 390 YMLYTPLSLKNLPPPMFSVRVGF------------DTNVVDVFPSFAEKKGAALLRDRLIMFRWDSEEFINKRTEFLESE 457 (1243)
T ss_pred eEEecchhhhcCCCCeEEEEecC------------CCceeeeccchhhhhHhhhccceeEEEecCcHHHHHHhccccHHh
Q ss_pred -----CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcC
Q 001363 845 -----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 845 -----~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~l~s~s~Dg~I~iwd~~ 916 (1092)
....+.+-. ++..++....++.-+++=++.+..-....--...+..-+.-. +..++..+..+|.|+-+|++
T Consensus 458 f~s~v~f~~~l~l~-~~~v~ll~dtnn~s~~~i~~~~d~~e~~k~~~ve~~~~~~l~~~~c~~~l~y~t~~G~v~~yn~e 536 (1243)
T COG5290 458 FDSIVLFDGFLVLK-SGHVFLLKDTNNESDTYITRNGDVDERKKRGTVETRRTSTLVHQLCQTLLRYGTCVGVVKHYNFE 536 (1243)
T ss_pred hhhhccccceEEec-CceEEEEeccCCCcceEEeecCcccchhhccceeeeeeehhhHHHHHHHHhhcccceeEEEecch
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=86.28 E-value=42 Score=38.96 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=72.3
Q ss_pred CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001363 864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
..+...++|.. |.++..+.........+.+.++|.+++..+ ..++.+|+.+.. .....+ ..+... .=..+.
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~~~~l--~~~~~~---~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV-IWEYDL--PGGYYD---FHHDID 196 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E-EEEEE----TTEE----B-S-EE
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE-EEeeec--CCcccc---cccccE
Confidence 34455566644 455444432222111166678998887665 678888887532 221122 211100 012577
Q ss_pred EccCCCEEEEEe--------------CCcEEEEEcCCceeeeeeccC-C-------------------------CCCEEE
Q 001363 944 FHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPISQ 983 (1092)
Q Consensus 944 ~s~dg~~la~~~--------------d~~i~lwd~~~~~~~~~~~~~-h-------------------------~~~v~~ 983 (1092)
.-|+|++|+.+. +..|..+| .+|+.+..|... | -.-+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999988754 23466666 677666554211 1 134788
Q ss_pred EEEec-CCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 984 ATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 984 l~fs~-dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
+.+.+ |+.+|+++=.-..|...|..++++...+....
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 89988 55555554444588888988999988877544
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=86.28 E-value=48 Score=38.97 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=88.7
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee-EeeccccCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCC-Cce
Q 001363 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDG-WGI 920 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--~I~iwd~~~-~~~ 920 (1092)
.+.+++.++ ++..+|....++. .+|-...+... ..+.+ ..++.-.|.++| ++-++..+. .|....-.. ++.
T Consensus 344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence 678899999 8888888877762 33433323332 23333 347777888887 666655443 444443221 110
Q ss_pred eeee--eeecCCCCcCCCCCceEEEEccCCCEEEE--EeCCc--EEEEEc---CCceeeee--e-ccCCCCCEEEEEEec
Q 001363 921 QTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETH--LAIYEA---EELTCLKQ--W-FPISSVPISQATFSC 988 (1092)
Q Consensus 921 ~~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~--i~lwd~---~~~~~~~~--~-~~~h~~~v~~l~fs~ 988 (1092)
.... .+.. .... ...|..+..|+||..+|. ..++. |+|--+ ..|..... . ..++...+.++.|..
T Consensus 419 ~~~~~~~v~~-~~l~--g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~ 495 (573)
T PRK13614 419 AQAPTVTLTA-DWLA--GRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVG 495 (573)
T ss_pred ccccceeecc-cccC--CCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcC
Confidence 0000 1111 1111 124999999999999887 34665 666544 34442211 1 112346889999999
Q ss_pred CCCEEEEEEC-C--CcEEEEEcCCC
Q 001363 989 DCRMVFTSFV-D--GTLSIHEASNL 1010 (1092)
Q Consensus 989 dg~~l~t~~~-D--g~i~vwd~~~~ 1010 (1092)
++.+++.+.. + ..+++..+..|
T Consensus 496 ~~sl~V~~~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 496 DSTVVVTKASATSNVVPELLSVDAG 520 (573)
T ss_pred CCEEEEEeccCCCcceEEEEEeCCC
Confidence 9987776542 2 34566666544
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=86.12 E-value=60 Score=35.89 Aligned_cols=43 Identities=5% Similarity=-0.150 Sum_probs=21.9
Q ss_pred CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC
Q 001363 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 957 ~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D 999 (1092)
+.+..||..+.+-...-.......-...+...++++.+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 4588899876654332111111111122234577888888754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.05 E-value=4.9 Score=40.71 Aligned_cols=72 Identities=10% Similarity=-0.028 Sum_probs=54.9
Q ss_pred EEEccCCCEEEE-EeCCcEEEEEcCCceeeeee------cc-------CCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 942 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 942 l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
+.+..++.+|++ ..+|.+++||+.+++.+... +. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 445667777776 89999999999998876442 22 3467889999999998888765 588999998
Q ss_pred CCCceEE
Q 001363 1008 SNLEVQC 1014 (1092)
Q Consensus 1008 ~~~~~~~ 1014 (1092)
+-+....
T Consensus 95 ~L~~W~~ 101 (219)
T PF07569_consen 95 DLGCWIR 101 (219)
T ss_pred ccceeEE
Confidence 8775553
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.00 E-value=2.9 Score=42.31 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=51.6
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCceeeee-ee-ecCCCC----cCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCc
Q 001363 894 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-SL-QTPDGV----MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 967 (1092)
Q Consensus 894 ~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~-~~-~~~~~~----~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~ 967 (1092)
+..++++|+..+.+|.+++||+.+++..... .+ ...... ......|..+.++.+|.-|++-.+|..+.|+..=+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999987644322 11 111100 01224689999999999888877788899987633
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=85.91 E-value=75 Score=36.86 Aligned_cols=193 Identities=12% Similarity=0.154 Sum_probs=91.7
Q ss_pred EEEEEE---eCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc-
Q 001363 456 ISVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG- 531 (1092)
Q Consensus 456 l~l~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~- 531 (1092)
+++++. ...+...+.| ..|.....+......... |...++|.+++... +.+..+|+.. +....+......
T Consensus 116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYY 189 (477)
T ss_dssp EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCccc
Confidence 355555 3445566677 556655555332222111 22355776666544 7777777753 333333333321
Q ss_pred --eEEEEEccCCCEEEEEec---------CCCCceeEEEEeCCCCeEEEEEeeccc----------------------c-
Q 001363 532 --CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL----------------------Q- 577 (1092)
Q Consensus 532 --i~~~~~s~dg~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~----------------------~- 577 (1092)
-..+...|+|++|+.+.. .......|..+| .+|+.+........ .
T Consensus 190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 235677899999887762 111123466677 77777665432110 0
Q ss_pred -CCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEeCCCCCCCC-ceEEEcc------------------CCCE
Q 001363 578 -HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPEN-PRICFNK------------------NGTL 636 (1092)
Q Consensus 578 -~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~------------------~~~~ 636 (1092)
--.+.++.+.+....|+..+. -..|...|..+++....+..++....- ....+.| -|++
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH 348 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH 348 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence 023788999895556665555 448889999999998888665432211 1111111 2566
Q ss_pred EEEEeCCC---eEEEEECCCCc
Q 001363 637 LAVIANEN---RIKILETPESN 655 (1092)
Q Consensus 637 l~~~~~dg---~i~iw~~~~~~ 655 (1092)
-+.-..+| .|.++|-...+
T Consensus 349 ~~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 349 TAHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp EEEE-TTS---SEEEEE--TTG
T ss_pred ceEEcCCCCeEEEEEEECCCCC
Confidence 66666777 88888876553
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=85.60 E-value=3.9 Score=39.76 Aligned_cols=32 Identities=38% Similarity=0.591 Sum_probs=26.3
Q ss_pred CcEEEEEECCCC------CEEEEEeCCCEEEEEEccCC
Q 001363 397 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHGG 428 (1092)
Q Consensus 397 ~~V~~l~~spdg------~~las~~~d~~i~iwd~~~~ 428 (1092)
..|.+++|||-| -+||+.+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 389999999954 47888899999999987653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.94 E-value=3.3 Score=44.67 Aligned_cols=159 Identities=9% Similarity=0.078 Sum_probs=97.5
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceee-EEec-CCCC----CeE-EEEEcCCCCCEEEEEeCCCcEEEE-E
Q 001363 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 872 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~s~~d~~~lasg~~dg~v~iw-d 872 (1092)
....+..+-..|||+.+..-+..++.++++.+.... +.+. ...+ .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 345677888999999999988889999988654322 1111 1112 122 222233 67778889999988776 4
Q ss_pred cCCc-e----eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC
Q 001363 873 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 873 ~~~~-~----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
+..+ . .+..++-...++..+.--.+.+-+++-+..|++.++.....+.. ..+..- ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCcc
Confidence 4332 2 12222212233433333334466777888888887765542211 111111 13668999999
Q ss_pred CCEEEEEeCCcEEEEEcCCcee
Q 001363 948 QTRFLLVHETHLAIYEAEELTC 969 (1092)
Q Consensus 948 g~~la~~~d~~i~lwd~~~~~~ 969 (1092)
+.+|++-..|.++++.+++...
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cchheeecCCceEEEEecCCCC
Confidence 9999998889999999876543
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.57 E-value=26 Score=38.16 Aligned_cols=162 Identities=13% Similarity=0.131 Sum_probs=89.0
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee-EEEEe
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALS 811 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~-~~~~s 811 (1092)
....+..+-..|||+.+..-+. ..+.++++........ ++-+-..|. ....|+ .+..-
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r---------kl~~dspg~-----------~~~~Vte~l~lL 277 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR---------KLVDDSPGD-----------SRHQVTEQLYLL 277 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh---------hhhhcCCCc-----------hHHHHHHHHHHH
Confidence 4566778889999998887776 5788888766543111 001111110 001111 11112
Q ss_pred cCCCEEEEEe-CCeEEEE-EcCCc-----eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001363 812 KNDAYLFSAS-GGVISLY-IVMTF-----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 812 ~dg~~l~~~s-dg~i~iw-d~~~~-----~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
..|.-+.+++ ||.|.-| |...+ ..++.++-...++..+.--. ..+-+++-+..|++.++.....+.+-.-.
T Consensus 278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~- 355 (733)
T COG4590 278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER- 355 (733)
T ss_pred hCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-
Confidence 2333344443 6666555 44322 12223332233444444333 45667777888888888765544332222
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001363 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~ 918 (1092)
--..+.-+++||.+.+|++-. .|.|+++.+++.
T Consensus 356 ~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 356 AYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred hhcCcceeeeCcccchheeec-CCceEEEEecCC
Confidence 223566789999999999754 456999988764
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=84.48 E-value=93 Score=37.01 Aligned_cols=190 Identities=9% Similarity=0.024 Sum_probs=101.3
Q ss_pred CeeEEEEecCCCEEEEEeC-C-eEEEEEcCCcee----eEEecCCCCCeEEEEEcCCCCCEEEEEeC--CC--cEEEEEc
Q 001363 804 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA 873 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sd-g-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg--~v~iwd~ 873 (1092)
.+.+++.|+++..+|...+ + .+.+..+..+.. ..... .....+.-.|.+ ++ .+-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEcC
Confidence 6778999999999887763 3 466655533322 11111 123466667777 45 3434322 22 2555543
Q ss_pred CCceeeEe-eccccC-CeEEEEEcCCCCEEEEEeC---CCcEEEEEcCC---CceeeeeeeecCCCCcCCCCCceEEEEc
Q 001363 874 RSSEVISK-LEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFH 945 (1092)
Q Consensus 874 ~~~~~~~~-l~~h~~-~V~~l~~spdg~~l~s~s~---Dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~~s 945 (1092)
+|+.... .....+ .|+.+..|+||-.+|.... .+.|.|=-+.. +............+. ..+.+++|.
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W~ 515 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSWA 515 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEEc
Confidence 4443210 112233 7999999999988776544 35565554433 221111122221221 248899999
Q ss_pred cCCCEEEEE--eC--CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEECCCcE
Q 001363 946 KDQTRFLLV--HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 1002 (1092)
Q Consensus 946 ~dg~~la~~--~d--~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~Dg~i 1002 (1092)
.++.+++.+ .+ ..+...++........ ..+.-..+..++-..+.+ .|+.+..++.|
T Consensus 516 ~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~-~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 516 GDSQLVVLGREEGGVQQARYVQVDGSTPPAS-APAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CCCEEEEEeccCCCCcceEEEecCCcCcccc-cccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 999988854 33 3344445443322211 112344566677776666 45543555554
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=84.22 E-value=94 Score=36.53 Aligned_cols=80 Identities=10% Similarity=0.165 Sum_probs=48.1
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeEEecCC-CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec-c----ccC
Q 001363 814 DAYLFSASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-G----HSK 887 (1092)
Q Consensus 814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~----h~~ 887 (1092)
+..++-.....|++.+...++........ ...|.+.+.. +.+++.+..++.+..+.+.......... . ...
T Consensus 418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (504)
T PF10433_consen 418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELDDNKISVSDNDETILELDN 494 (504)
T ss_dssp TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence 55666666777999998877777665433 3456666664 3467777778999999988766542222 1 457
Q ss_pred CeEEEEEcC
Q 001363 888 RVTGLVFSD 896 (1092)
Q Consensus 888 ~V~~l~~sp 896 (1092)
.|.|+...|
T Consensus 495 eis~l~i~p 503 (504)
T PF10433_consen 495 EISCLSIEP 503 (504)
T ss_dssp -EEEEE---
T ss_pred ceEEEEeCC
Confidence 788887765
|
... |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.99 E-value=57 Score=33.84 Aligned_cols=276 Identities=10% Similarity=0.063 Sum_probs=129.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceee
Q 001363 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
+.+..+.++ +++++.+..+.-++|.|+.+......+..-.... ..-.+.-.|++..++..|.-+.+.|+.+.....
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g--yaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG--YAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc--eEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 455666665 4678888888889999998765443332211101 223344458888888866677788887653322
Q ss_pred e---cccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccc
Q 001363 659 A---AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 735 (1092)
Q Consensus 659 ~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~ 735 (1092)
. ..........++++ |++-..+..|+.+.+-|+......... .......
T Consensus 163 lagrya~~~~d~~~v~IS------------------------Gn~AYvA~~d~GL~ivDVSnp~sPvli----~~~n~g~ 214 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS------------------------GNYAYVAWRDGGLTIVDVSNPHSPVLI----GSYNTGP 214 (370)
T ss_pred eeeeeccCCCCceeEEEe------------------------cCeEEEEEeCCCeEEEEccCCCCCeEE----EEEecCC
Confidence 1 11122222223332 555566667777788776532211110 0001122
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.+.++..+++..+++.... | +.+-+....+ .+.++. .-+......++.+.++ ++
T Consensus 215 g~~sv~vsdnr~y~vvy~e-g-vlivd~s~~s-----------sp~~~g-----------syet~~p~~~s~v~Vs--~~ 268 (370)
T COG5276 215 GTYSVSVSDNRAYLVVYDE-G-VLIVDVSGPS-----------SPTVFG-----------SYETSNPVSISTVPVS--GE 268 (370)
T ss_pred ceEEEEecCCeeEEEEccc-c-eEEEecCCCC-----------CceEee-----------ccccCCcccccceecc--cc
Confidence 5666666666554443332 2 2222221110 011111 0000011222223333 33
Q ss_pred EEEEEe-CCeEEEEEcCCcee---eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEE
Q 001363 816 YLFSAS-GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 816 ~l~~~s-dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
+...+. +.-+.+-|+..... ...+.........+..+ +.++..+..+ ...+-+....+......+....+.+
T Consensus 269 ~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay---~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s 344 (370)
T COG5276 269 YAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY---GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQS 344 (370)
T ss_pred eeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe---cCeeEeccCC-ceEEEeCCChhhcccccCcceEeee
Confidence 443333 33344455442211 11111111122333332 2344444433 4445555544433333333334455
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcC
Q 001363 892 LVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 892 l~~spdg~~l~s~s~Dg~I~iwd~~ 916 (1092)
.+.+-+.+.+-+...++.+.||+..
T Consensus 345 ~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 345 CDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred cceEEEeeEEEEeecCCCEEEEEec
Confidence 5555566778888889989999853
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=83.92 E-value=73 Score=35.07 Aligned_cols=188 Identities=13% Similarity=0.143 Sum_probs=100.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec--ccCCccE--EEEEe-cC---CeEEEEEcCCCCceE-EecC
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHF--IFSIS-VD---GKIKAWLYDSLGARV-DYDA 527 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~~--l~s~~-~d---g~i~vwd~~~~~~~~-~~~~ 527 (1092)
+++....++-+.+||+ .|+.++.+. .+.++.+... ..-+++. |+.++ .+ .+|++|.++...... .+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777778888999995 555666664 2344444321 1112222 33333 32 469999887533322 2221
Q ss_pred -------CCCceEEEEEc--c-CCCEEEEEecCCCCceeEEEEeC---CCC----eEEEEEeeccccCCceEEEEEcCCC
Q 001363 528 -------PGLGCTRMAYS--A-NGRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK 590 (1092)
Q Consensus 528 -------~~~~i~~~~~s--~-dg~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1092)
....+..+|+- + +|.+.+.... + ++.+..|.+ ..+ +.++.|... ..+..|......
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDET 219 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETTT
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEeccc
Confidence 11246677763 3 4554444432 1 334554443 333 456777653 478899999999
Q ss_pred CEEEEEeCCCcEEEEECCC-----CceEEEEeCCCCCCCCceEEEc--cCC-CEEEEEe-CCCeEEEEECCCC
Q 001363 591 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFN--KNG-TLLAVIA-NENRIKILETPES 654 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--~~~-~~l~~~~-~dg~i~iw~~~~~ 654 (1092)
.+|+.+-++.-|.-|+.+. +..+.......-...+-.+++- .++ .+|++.+ .+++..+|+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999998888888762 2222222222223456666664 333 2444444 4789999998754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=83.26 E-value=29 Score=39.39 Aligned_cols=112 Identities=12% Similarity=0.089 Sum_probs=60.8
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC------CEEEEE--e-
Q 001363 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H- 955 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg------~~la~~--~- 955 (1092)
.-...+.|+|.|||++|++--..|.|++++-.++.......+...... .-......|+|+|+- .+|.++ .
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~-~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVND-AQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceecc-CCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 345578999999998888765569999998665432211111100000 012357899999884 344442 1
Q ss_pred --------CCcEEEEEcCCc-------eeeeeecc---CCCCCEEEEEEecCCCEEEEEECC
Q 001363 956 --------ETHLAIYEAEEL-------TCLKQWFP---ISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 956 --------d~~i~lwd~~~~-------~~~~~~~~---~h~~~v~~l~fs~dg~~l~t~~~D 999 (1092)
...|.-|.+... +.+..-.+ .|. -..|+|.|||.++++.+..
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 123444544311 11111111 132 3467899999877766544
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=83.06 E-value=7.1 Score=37.96 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCC------CEEEEEeCCCcEEEEEcCC
Q 001363 887 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 887 ~~V~~l~~spdg------~~l~s~s~Dg~I~iwd~~~ 917 (1092)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999954 5789999999999998775
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=82.72 E-value=1.1e+02 Score=36.34 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=86.4
Q ss_pred CeEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCcee-----eEeeccccCCeEEEEEcCCCCEEEEEeC--CC--cEEEEE
Q 001363 845 TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEV-----ISKLEGHSKRVTGLVFSDALNILVSSGG--DA--QIFVWD 914 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~-----~~~l~~h~~~V~~l~~spdg~~l~s~s~--Dg--~I~iwd 914 (1092)
.+.+++.++ ++..+|....++ .+++..+..+.. ...+. ...++.-.|.++| .+-+... ++ .+++..
T Consensus 364 ~~~s~avS~-~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSR-DESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcC-CCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCC-CEEEecCCCCCceEEEEEc
Confidence 678999999 788888777666 555555433322 12222 2346777888887 5555532 22 255555
Q ss_pred cCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-Ee---CCcEEEEEcC---Cce-eeee---eccCCCCCEEE
Q 001363 915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH---ETHLAIYEAE---ELT-CLKQ---WFPISSVPISQ 983 (1092)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~---d~~i~lwd~~---~~~-~~~~---~~~~h~~~v~~ 983 (1092)
- +++... +.... .....|..+..|+||..+|. .. .++|+|--+. .|. .+.. +... ...+.+
T Consensus 440 ~-~G~~~~---V~~~~---l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~-l~~v~~ 511 (599)
T PRK13613 440 G-DGEPVE---VRTPE---LDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE-LEDVTD 511 (599)
T ss_pred C-CCcEEE---eeccc---cCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC-CCccce
Confidence 3 333221 22211 00126999999999999987 32 2556655442 332 1111 1122 335899
Q ss_pred EEEecCCCEEEEEE-CCCcEEEEEcC
Q 001363 984 ATFSCDCRMVFTSF-VDGTLSIHEAS 1008 (1092)
Q Consensus 984 l~fs~dg~~l~t~~-~Dg~i~vwd~~ 1008 (1092)
+.|..++.+++.+. .++...+|.+.
T Consensus 512 ~~W~~~~sL~Vlg~~~~~~~~v~~v~ 537 (599)
T PRK13613 512 MSWAGDSQLVVLGREEGGVQQARYVQ 537 (599)
T ss_pred eEEcCCCEEEEEeccCCCCcceEEEe
Confidence 99999998877553 33344555544
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=82.17 E-value=78 Score=34.10 Aligned_cols=210 Identities=13% Similarity=0.009 Sum_probs=102.7
Q ss_pred CCCcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCc-----------ccc-eEEEcccccceeEEEEecCCCcEEEEEE
Q 001363 395 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSD-----------ARQ-QLEIDAHVGNVNDLAFSAPCKQISVITC 461 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~-----------~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~ 461 (1092)
+...|+++...+.-+.|++-+ ....++++++..-.. .+. ....-+|......+... .++...++.+
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~-~~~~~~~l~~ 119 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVV-NGKRSLFLCV 119 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEE-cCCCcEEEEE
Confidence 567899999999877777654 344599999843221 000 00112344444444444 3333345555
Q ss_pred eCCCcEEEEECCCC----ceeEEE---e-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC--CCce-----EEec
Q 001363 462 GDDKTIKVWDAVTG----SRTYSF---E-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--LGAR-----VDYD 526 (1092)
Q Consensus 462 ~~d~~i~vwd~~~~----~~~~~~---~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~-----~~~~ 526 (1092)
....+|.++.+... ...+.+ . .-..++..+..+.+.....+..|+..+-..++++.. .... ....
T Consensus 120 A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~ 199 (302)
T smart00036 120 ALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSE 199 (302)
T ss_pred EcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccc
Confidence 55667777654322 111111 0 112233333333333345666676643334444432 1100 0011
Q ss_pred CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
.......++..-+++.+|++- +......|.......+ .+. .. ....++++. ..++++-+. ..|.|
T Consensus 200 ~~~~~p~~i~~l~~~e~Llc~------~~~~v~Vn~~G~~~~r~~~l~-w~---~~p~~~~~~--~pyll~~~~-~~iev 266 (302)
T smart00036 200 ETSLKPISVVQVPRDEFLLCY------DEFGVFVNLYGKRRSRNPILH-WE---FMPESFAYH--SPYLLAFHD-NGIEI 266 (302)
T ss_pred ccccCceEEEEECCCeEEEEE------CcEEEEEeCCCCccccceEEE-cC---CcccEEEEE--CCEEEEEcC-CcEEE
Confidence 111023333334455666554 2234444543212211 121 12 345566665 367777654 45999
Q ss_pred EECCCCceEEEEeC
Q 001363 605 WDMNKVQLLTTIDA 618 (1092)
Q Consensus 605 wd~~~~~~~~~~~~ 618 (1092)
+++.++..++++..
T Consensus 267 r~l~~~~l~q~i~~ 280 (302)
T smart00036 267 RSIKTGELLQELAD 280 (302)
T ss_pred EECCCCceEEEEec
Confidence 99999999888864
|
Unpublished observations. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1092 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-12 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 9e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-09 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-09 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-09 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 9e-08 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 8e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 3e-07 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 4e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-06 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-06 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 7e-06 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 8e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 9e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 9e-05 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 6e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 7e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1092 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.98 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.84 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.84 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.81 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.8 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.78 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.77 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.72 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.71 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.7 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.69 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.68 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.68 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.65 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.65 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.63 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.61 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.61 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.6 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.59 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.58 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.57 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.57 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.56 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.56 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.56 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.55 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.55 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.55 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.54 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.53 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.53 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.53 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.51 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.49 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.49 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.47 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.47 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.47 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.46 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.42 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.38 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.37 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.36 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.34 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.29 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.28 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.28 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.27 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.26 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.26 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.25 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.25 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.22 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.21 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.2 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.2 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.18 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.17 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.17 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.16 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.16 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.16 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.14 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.13 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.1 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.06 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.05 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.02 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.01 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.96 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.94 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.93 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.92 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.86 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.86 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.86 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.86 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.84 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.84 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.83 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.79 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.75 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.72 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.7 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.69 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.67 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.66 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.63 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.58 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.53 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.51 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.51 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.48 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.47 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.47 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.47 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.46 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.44 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.43 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.41 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.4 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.4 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.36 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.36 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.35 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.33 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.33 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.29 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.29 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.27 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.27 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.24 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.23 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.2 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.14 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.13 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.11 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.99 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.99 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.97 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.95 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.88 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.87 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.81 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.8 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.79 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.73 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.73 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.63 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.62 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.6 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.59 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.55 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.53 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.45 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.43 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.34 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.29 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.27 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.23 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.22 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 97.19 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.19 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.07 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.07 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.05 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.01 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.94 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.86 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.84 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.83 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.82 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.72 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.69 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.65 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.64 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.53 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.35 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.14 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.11 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.01 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.0 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.98 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.94 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.82 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.81 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.8 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.26 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.23 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.99 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.91 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.49 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.39 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 94.32 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.01 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 93.04 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.49 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 91.37 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 91.26 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 90.96 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.23 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 89.85 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 89.47 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 88.4 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 87.87 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 87.18 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 82.56 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 82.33 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 80.61 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-69 Score=648.73 Aligned_cols=567 Identities=22% Similarity=0.334 Sum_probs=490.7
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
.+.|+||++.|+|++|||||+ +||+|+.|++|+|||. +++.+.. +.+|...|.+++|+|
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp 67 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP 67 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence 467999999999999999998 6899999999999995 6666654 778999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
||++||+++.|++|+|||+. ++.+ ..+.+|...|.+++|+||++ +|++++.|+.+++|+.. ........+|..
T Consensus 68 dg~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~ 140 (577)
T 2ymu_A 68 DGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSS 140 (577)
T ss_dssp TSSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCC
Confidence 99999999999999999965 4433 37889999999999999999 89999999999999954 455667788999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.+..+.+.+ ++..+++++.++.+++|+... ........+...+..+.++|+++++++++. ++.|++||. +++
T Consensus 141 ~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~ 212 (577)
T 2ymu_A 141 SVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ 212 (577)
T ss_dssp CEEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred ceeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence 999998855 667899999999999998543 445566678889999999999999999986 667999995 677
Q ss_pred EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1092)
.+..+.+|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++++++++.|+.|
T Consensus 213 ~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 213 LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTV 286 (577)
T ss_dssp EEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 888888887 89999999999999999999999999996 56777777655 3468999999999999999999999
Q ss_pred EEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccc
Q 001363 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1092)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~ 726 (1092)
++|+.. ++....+.+|...+.+++++ |+++.+++++.|+.+++|+...... ..
T Consensus 287 ~~w~~~-~~~~~~~~~h~~~v~~~~~~----------------------~~~~~l~t~~~d~~i~~w~~~~~~~---~~- 339 (577)
T 2ymu_A 287 KLWNRN-GQLLQTLTGHSSSVWGVAFS----------------------PDGQTIASASDDKTVKLWNRNGQHL---QT- 339 (577)
T ss_dssp EEEETT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTSCEE---EE-
T ss_pred EEEeCC-CcEEEEEecCCCCeEEEEEC----------------------CCCCEEEEEeCCCeEEEEeCCCCee---EE-
Confidence 999964 56778888999999999886 7888999999999999999753221 11
Q ss_pred ccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001363 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~ 806 (1092)
..+|...+.+++|+|+++.+++++.+|.+++|+... ..+.... +|...|.
T Consensus 340 ---~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~~~----~~~~~v~ 389 (577)
T 2ymu_A 340 ---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQTLT----GHSSSVR 389 (577)
T ss_dssp ---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEEEE----CCSSCEE
T ss_pred ---EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEEec----CCCCCeE
Confidence 134788999999999999999999999999998432 1122211 3888999
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccc
Q 001363 807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 885 (1092)
+++|+||+++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|
T Consensus 390 ~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~ 466 (577)
T 2ymu_A 390 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGH 466 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC
Confidence 999999999999998 799999995 5788889999999999999999 8999999999999999996 46788899999
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEc
Q 001363 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA 964 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~ 964 (1092)
...|++++|+||+++|++++.|+.|++||... + .++...+|.. .|.+++|+|||++|++ +.|+.|++||.
T Consensus 467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 99999999999999999999999999999654 2 3444455554 7999999999999998 67899999996
Q ss_pred CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001363 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
+++++.. +.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus 538 -~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 -NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 5777776 568999999999999999999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-67 Score=632.40 Aligned_cols=565 Identities=21% Similarity=0.317 Sum_probs=484.9
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
.|.||++.|++++|||||++||+|+.|++|+|||. +++.++ ++.+|.+.|++++|+||++ +|++++.|++|+||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~---~l~gh~~~V~~l~fspdg~--~las~~~d~~i~vW 84 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLW 84 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE---EEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEE---EEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEEE
Confidence 38899999999999999999999999999999996 455443 7889999999999999999 89999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
| .+++.+..+.+|...|.+++|++ ++.+|++++.|+.+++|+... ........+...+..+.++|+++.++.++.
T Consensus 85 d-~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~- 159 (577)
T 2ymu_A 85 N-RNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD- 159 (577)
T ss_dssp E-TTSCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEET-
T ss_pred E-CCCCEEEEEECCCCCEEEEEECC--CCCEEEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeecCCccceeccc-
Confidence 9 57889999999999999999965 778999999999999999754 345566777889999999999999998875
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
+..+.+|+.. .........+. ..+..+.++|+++++++++.|+.|++||. +++.+..+..+. ..|.+++|
T Consensus 160 ---~~~~~~~~~~-~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~--~~v~~~~~ 229 (577)
T 2ymu_A 160 ---DKTVKLWNRN-GQLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAF 229 (577)
T ss_dssp ---TSEEEEECTT-SCEEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS--SCEEEEEE
T ss_pred ---ccceeccccc-eeeeeeccCCC---cceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCC--CCEEEEEE
Confidence 5568889865 44455555555 88999999999999999999999999996 567777777654 46899999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001363 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1092)
+|++++|++++.|+.|++|+.. ++.+..+.+|...+.+++++ |+++.+++++.|+.+
T Consensus 230 s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~----------------------~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 230 SPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFR----------------------PDGQTIASASDDKTV 286 (577)
T ss_dssp CTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCE
T ss_pred CCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEc----------------------CCCCEEEEEeCCCEE
Confidence 9999999999999999999964 56788888999999988886 788899999999999
Q ss_pred ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc
Q 001363 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790 (1092)
Q Consensus 711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 790 (1092)
++|+..... .. ...+|...|.+++|+|+++.+++++.||.+++|+.....
T Consensus 287 ~~w~~~~~~---~~----~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------------- 336 (577)
T 2ymu_A 287 KLWNRNGQL---LQ----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----------------------- 336 (577)
T ss_dssp EEEETTSCE---EE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------
T ss_pred EEEeCCCcE---EE----EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------
Confidence 999964211 11 113588899999999999999999999999999854321
Q ss_pred eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 001363 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 869 (1092)
Q Consensus 791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~ 869 (1092)
+... . +|...+.+++|+|+++++++++ ++.+++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|+
T Consensus 337 ~~~~--~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 337 LQTL--T--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVK 410 (577)
T ss_dssp EEEE--C--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEE
T ss_pred eEEE--e--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEE
Confidence 2221 1 3888999999999999999998 699999995 5788889999999999999999 899999999999999
Q ss_pred EEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 870 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
+||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||.... .+....+|.. .|.+++|+||++
T Consensus 411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~ 480 (577)
T 2ymu_A 411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQ 480 (577)
T ss_dssp EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSC
T ss_pred EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCC
Confidence 9995 57888999999999999999999999999999999999997642 2333344443 799999999999
Q ss_pred EEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCcc
Q 001363 950 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028 (1092)
Q Consensus 950 ~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1092)
+|++ +.|+.|++||. +++++.. +.+|...|++++|+|||++|++++.||.|++||. +++.+..+. .|.
T Consensus 481 ~las~~~d~~i~iw~~-~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--------~h~ 549 (577)
T 2ymu_A 481 TIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHS 549 (577)
T ss_dssp EEEEEETTSEEEEEET-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCS
T ss_pred EEEEEeCCCEEEEEcC-CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--------CCC
Confidence 9999 57899999995 5777766 5689999999999999999999999999999996 577776665 245
Q ss_pred ccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001363 1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1029 ~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
..|. +++|+| |+.+|++++.||+|++||
T Consensus 550 ~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 550 SSVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 5565 678999 689999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-67 Score=630.32 Aligned_cols=577 Identities=15% Similarity=0.184 Sum_probs=477.1
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.+++.+.+++|+|||+ +||+++ +++|+|||+.+++.... +.+|...|++++|||||++|
T Consensus 16 ~~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~l 74 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC 74 (611)
T ss_dssp CCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEE
Confidence 4577899999999998 578876 57999999998876654 77999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC----CcEEEEECCCCceeEEEecCCcC
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
|+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++ .|++++.+ +.|++|| +++.+..+.+|...
T Consensus 75 asg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~ 149 (611)
T 1nr0_A 75 ASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA 149 (611)
T ss_dssp EEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred EEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence 999999999999998665432 236789999999999999999 67777754 3566665 67778889999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
|++++|+|.. ...|++++.|++|++||..+.+....+..|...|.+++|+|||++|++++. ++.|++||..+++.
T Consensus 150 v~~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 150 MNSVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTK 224 (611)
T ss_dssp EEEEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCE
T ss_pred ceEEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcE
Confidence 9999997642 136999999999999999888888889999999999999999999999986 66799999999998
Q ss_pred EEEEe-------eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCC-CCCceEEEccCCCEEEE
Q 001363 568 KRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAV 639 (1092)
Q Consensus 568 ~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~ 639 (1092)
+..+. +|. +.|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| ++..+++
T Consensus 225 ~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s 299 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVS 299 (611)
T ss_dssp EEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEE
T ss_pred eeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEE
Confidence 88874 455 89999999999999999999999999999999998888654221 12334455 7889999
Q ss_pred EeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001363 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~ 719 (1092)
++.|+.+++|+...+.....+.+|...|.+++++ |||+++++++.|+++++||+..+.
T Consensus 300 ~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp EETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTCC
T ss_pred EeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCCc
Confidence 9999999999999988888889999999999996 789999999999999999987543
Q ss_pred CccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCC
Q 001363 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 799 (1092)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 799 (1092)
... ....+|...|.+++|++++ .+++++.|+.+++|+......... . .....
T Consensus 358 ~~~-----~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~-~~~~~---- 409 (611)
T 1nr0_A 358 SNR-----VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------K-AVANK---- 409 (611)
T ss_dssp EEE-----CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------S-CCEEE----
T ss_pred eee-----ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------c-eeeee----
Confidence 211 1123588899999999877 588999999999998764321000 0 00001
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee-
Q 001363 800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV- 878 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~- 878 (1092)
......+++|+|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.++..
T Consensus 410 -~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~ 483 (611)
T 1nr0_A 410 -LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVS 483 (611)
T ss_dssp -CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEE
T ss_pred -cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCcee
Confidence 23346789999999988888899999999 344 45554 778899999999 899999999999999999987653
Q ss_pred -eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-Ee
Q 001363 879 -ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 955 (1092)
Q Consensus 879 -~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~ 955 (1092)
+.. .+|...|++++|||||++|++++.|++|++|++.+ ++... .....+|.. .|.+++|+|||++||+ +.
T Consensus 484 ~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~---~V~~v~fspdg~~lasgs~ 556 (611)
T 1nr0_A 484 EVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTA---KVACVSWSPDNVRLATGSL 556 (611)
T ss_dssp EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSS---CEEEEEECTTSSEEEEEET
T ss_pred eeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeeccc---ceeEEEECCCCCEEEEEEC
Confidence 334 67999999999999999999999999999999987 33211 001222443 7999999999999999 68
Q ss_pred CCcEEEEEcCCceeee-eeccCC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 956 ETHLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 956 d~~i~lwd~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
|++|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 557 D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 557 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 9999999998876332 446789 89999999999998 9999999999999974
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-65 Score=670.36 Aligned_cols=619 Identities=14% Similarity=0.178 Sum_probs=513.7
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....+.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s 666 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFS 666 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEe
Confidence 4467889999999999999998 689999999999999999988765 77899999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
|||++||+++.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.
T Consensus 667 ~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 667 SDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743 (1249)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred cCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence 999999999999999999999987655 67899999999999997655589999999999999999999999999999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------------CCCceEEEEEccCCCEEEEEecCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------------PGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------------~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
..|.+++|++ ++.++++++.||.|++||+.+......+.. ....+.+++|+|+|+.+++++
T Consensus 744 ~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---- 817 (1249)
T 3sfz_A 744 NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA---- 817 (1249)
T ss_dssp SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----
T ss_pred CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----
Confidence 9999999965 668999999999999999988776554432 123678899999999999986
Q ss_pred CceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 553 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.+.+||..++.....+. +|. ..+.+++|+|+++++++++.||.|++||+.++..+..+..|. ..|.+++|+
T Consensus 818 -~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~s 891 (1249)
T 3sfz_A 818 -KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFS 891 (1249)
T ss_dssp -TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEEC
T ss_pred -CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEEC
Confidence 4569999999999888776 444 899999999999999999999999999999999998887664 469999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001363 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
|+++++++++.||.|++|+..+......... .......+ .+++..++.....+.+.
T Consensus 892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVF----------------------QENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEE----------------------ETTEEEEEEEESSSSEE
T ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEE----------------------cCCCcEEEEecCCcceE
Confidence 9999999999999999999764322111110 00011111 12334444444455555
Q ss_pred eeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCce
Q 001363 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791 (1092)
Q Consensus 712 lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 791 (1092)
++....... . ......+.+++++|+++.+++++.+|.+++|++.... ..
T Consensus 948 ~~~~~~~~~---~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~----------------------~~ 996 (1249)
T 3sfz_A 948 LIAGKTGQI---D------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR----------------------VF 996 (1249)
T ss_dssp EEEESSCCE---E------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS----------------------CE
T ss_pred EEecCcceE---E------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc----------------------ee
Confidence 555332111 0 1145679999999999999999999999999875432 12
Q ss_pred eeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 001363 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1092)
Q Consensus 792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1092)
.. +. +|...|.+++|+|+|+++++++ |+.|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++
T Consensus 997 ~~--~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 997 SS--GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKV 1069 (1249)
T ss_dssp EE--CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEE
T ss_pred ee--cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEE
Confidence 22 11 4889999999999999999998 7999999999988764 557899999999999 55 6778999999999
Q ss_pred EEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCE
Q 001363 871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 871 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
||+.+++.+..+.+|.+.|++++|+||+++|++++.||+|++||+.+++ .+....+|.. .|.+++|+|||++
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~ 1141 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGIL 1141 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSE
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCE
Confidence 9999999999999999999999999999999999999999999999865 4455556554 7999999999999
Q ss_pred EEE-EeCCcEEEEEcCCceeeeee--------ccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccc
Q 001363 951 FLL-VHETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1092)
Q Consensus 951 la~-~~d~~i~lwd~~~~~~~~~~--------~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~ 1021 (1092)
|++ +.|+.|++||+.+++.+..+ ..+|.+.|++++|||||++|++++ |.|++||+.+++.+..+.
T Consensus 1142 lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~---- 1215 (1249)
T 3sfz_A 1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY---- 1215 (1249)
T ss_dssp EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC----
T ss_pred EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee----
Confidence 999 57899999999999887664 256899999999999999999885 899999999998876554
Q ss_pred cCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001363 1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1022 ~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
.|...|. +++|+| |+.+|++++.||.|++|++.+
T Consensus 1216 ----~~~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1216 ----TNGTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp ----CSSCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred ----ccCCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 1334454 577898 588999999999999999864
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-63 Score=601.96 Aligned_cols=573 Identities=11% Similarity=0.114 Sum_probs=457.7
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001363 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
..+.+.+.+++|+|||++||+++ ++.|++|++.+++... .+.+|...|++++|+|||+ +|++|+.|++|+|||+
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~ 88 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDT 88 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEES
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeEC
Confidence 34678889999999999999997 4689999998876554 6889999999999999999 8999999999999998
Q ss_pred CCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEE
Q 001363 473 VTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLF 545 (1092)
Q Consensus 473 ~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~ 545 (1092)
.+++ ....+.+|.++|.+++|+| ++++|++++.+ +.|++|| .+.....+.+|...|.+++|+|++. .|+
T Consensus 89 ~~~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 89 TQTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred CCCcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEE
Confidence 7554 4567889999999999965 67889888865 3677776 4556667888999999999999997 588
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----C
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----G 620 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~ 620 (1092)
+++. ++.|++||..+++....+.+|. ..|.+++|+|++++|++++.|++|++||..+++.+..+... +
T Consensus 165 s~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~ 237 (611)
T 1nr0_A 165 SGSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237 (611)
T ss_dssp EEET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred EEeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccc
Confidence 8876 6679999999999999999888 89999999999999999999999999999999988887421 3
Q ss_pred CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccccc---CceeeeeecCCCccccccccCCceeecCCCCCC
Q 001363 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS---DNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 697 (1092)
+...|.+++|+|++++|++++.|++|++||+.+++....+..+. .....+. .+
T Consensus 238 h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 293 (611)
T 1nr0_A 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WT 293 (611)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------EC
T ss_pred cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------Ec
Confidence 44579999999999999999999999999999987776654321 1111111 24
Q ss_pred CccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccc
Q 001363 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777 (1092)
Q Consensus 698 ~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 777 (1092)
++.+++++.|+.+++|+....... ....+|...|.+++|+|+|+.|++++.|+.|++|++...
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~------~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~----------- 356 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSID------QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG----------- 356 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----------
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcc------eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-----------
Confidence 778999999999999997643211 112358899999999999999999999999999987543
Q ss_pred cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE---ecCCCCCeEEEEEcCC
Q 001363 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPH 854 (1092)
Q Consensus 778 ~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~ 854 (1092)
.+... + ..+|...|.+++|++++.++..+.|+.+++|+..++..... .........+++|+|
T Consensus 357 -----------~~~~~--~-~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 421 (611)
T 1nr0_A 357 -----------ISNRV--F-PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA- 421 (611)
T ss_dssp -----------CEEEC--S-SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-
T ss_pred -----------ceeee--c-ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-
Confidence 11111 1 12488999999999888655555589999999876543210 011234567899999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC
Q 001363 855 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 934 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 934 (1092)
++.+++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... +.. .+|..
T Consensus 422 dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~~ 492 (611)
T 1nr0_A 422 DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHPA 492 (611)
T ss_dssp TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECSS
T ss_pred CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCCC
Confidence 78777776 467899998 344 55555 88899999999999999999999999999998754322 122 23333
Q ss_pred CCCCceEEEEccCCCEEEE-EeCCcEEEEEcCC-ceeeee-eccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 935 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 935 ~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
.|.+++|||||++|++ +.|++|++||+.+ ++.... ...+|...|.+++|||||++|++++.|++|++|++.++.
T Consensus 493 ---~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 493 ---EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp ---CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred ---ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 7999999999999999 6889999999987 666554 344599999999999999999999999999999999875
Q ss_pred eEE-eeccccccCCCCc-cccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1012 VQC-RILSTAYLRPTTS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1012 ~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
... ... ..| ...|. +++|+| |+. |++++.||+|++|+++
T Consensus 570 ~~~~~~~-------~~h~~~~v~--~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 570 DHPIIIK-------GAHAMSSVN--SVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCCEEET-------TSSTTSCEE--EEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred cccchhh-------ccCcccCee--EEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 321 111 113 34455 678888 455 9999999999999983
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=581.66 Aligned_cols=559 Identities=11% Similarity=0.155 Sum_probs=484.7
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC----CeeEEeeeeeeecccccceeeEeeecCCCCc-EEEEEEC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS 405 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~-V~~l~~s 405 (1092)
..|.+.|++++|||||+ +||+++ ++.|+|||+.++ +.... +.+|... |.+++|+
T Consensus 15 ~~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS 73 (615)
T ss_dssp CCCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred CCccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence 36888999999999999 577776 789999999988 65554 7789999 9999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEccCCC-----cccceEEEcccccceeEEEEecCCCcEEEEEEeCC----CcEEEEECCC
Q 001363 406 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT 474 (1092)
Q Consensus 406 p--dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~ 474 (1092)
| |+++||+++.||.|++||+.++. .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| +
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence 9 99999999999999999997651 1123336778999999999999999 78888877 6788887 7
Q ss_pred CceeEEEecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEccC-CCEEEEEec
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT 549 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~d-g~~l~~~~~ 549 (1092)
++.+..+.+|...|.+++|++ ++. ++++++.||.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 788899999999999999976 444 899999999999999999888888888888 9999999999 999999986
Q ss_pred CCCCceeEEEEeCCCCeEEEEE-e---eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC--CC
Q 001363 550 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP 623 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~ 623 (1092)
++.|++||+.+++.+..+ . .|. ..|.+++|+ ++.++++++.|+.|++||+.+++.+..+..+.. ..
T Consensus 228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 566999999999999888 5 565 899999999 999999999999999999999999988876521 13
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
.+.++.|+ +++++++++.||.|++|++.+++.+..+.+|...+.++++ |. +++
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~ 352 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LIS 352 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEE
T ss_pred ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEE
Confidence 45677775 8999999999999999999999999999999999998888 52 788
Q ss_pred eccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccc
Q 001363 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1092)
Q Consensus 704 ~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 783 (1092)
++.|+.+++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++....
T Consensus 353 ~~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~---------------- 404 (615)
T 1pgu_A 353 GSYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE---------------- 404 (615)
T ss_dssp EETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE----------------
T ss_pred ECCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc----------------
Confidence 9999999999976 111 458899999999 667789999999999999875432
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 001363 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863 (1092)
Q Consensus 784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 863 (1092)
....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|++++
T Consensus 405 -----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~ 463 (615)
T 1pgu_A 405 -----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGL 463 (615)
T ss_dssp -----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEE
T ss_pred -----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEee
Confidence 1125788999999999999888999999999999988887 88899999998 67999999
Q ss_pred C-CCcEEEEEcCCceee-EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC-CcCCCCCce
Q 001363 864 D-DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSET 940 (1092)
Q Consensus 864 ~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~ 940 (1092)
. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++ .+....+ |.. .|.
T Consensus 464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~~---~v~ 535 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTS---KIN 535 (615)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSS---CEE
T ss_pred cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCCC---cee
Confidence 9 999999999988766 7788899999999999999999999999999999999865 3344444 443 799
Q ss_pred EEEEcc----------CCCEEEE-EeCCcEEEEEcCCc-eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 941 HIQFHK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 941 ~l~~s~----------dg~~la~-~~d~~i~lwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
+++|+| ++++|++ +.|+.|++||+.++ +++.. +.+|...|++++|+|||+ |++++.||+|++|++.
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 999999 9999999 57899999999988 55554 678999999999999999 9999999999999987
Q ss_pred CC
Q 001363 1009 NL 1010 (1092)
Q Consensus 1009 ~~ 1010 (1092)
++
T Consensus 614 ~~ 615 (615)
T 1pgu_A 614 LE 615 (615)
T ss_dssp --
T ss_pred cC
Confidence 53
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-58 Score=608.41 Aligned_cols=587 Identities=16% Similarity=0.187 Sum_probs=498.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++||
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIWD 685 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999987555 7889999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++.
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-- 763 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA-- 763 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES--
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC--
Confidence 999999999999999999999988778889999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCeEEEEEeecc----------ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
++.|++||+.+++....+.... .....+.+++|+|++..+++++ ++.+.+||..++.....+... +
T Consensus 764 --dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~-~ 839 (1249)
T 3sfz_A 764 --DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG-H 839 (1249)
T ss_dssp --SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-S
T ss_pred --CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-C
Confidence 6679999999998877665321 0123688899999999999987 689999999999988877632 2
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
...+.+++|+|+++++++++.||.|++|+..++.....+.+|...|.+++++ |+++.+
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~l 897 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSSF 897 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCEE
Confidence 3578999999999999999999999999999999999999999999999996 788899
Q ss_pred eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001363 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 781 (1092)
++++.|+.+++|++......... .......+.+.+++..+++....+.+.++.....
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 954 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG--------------- 954 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC---------------
T ss_pred EEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcc---------------
Confidence 99999999999997643322111 1223345667777777777777777777654322
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001363 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860 (1092)
Q Consensus 782 ~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 860 (1092)
..... +...+.+++|+|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|+
T Consensus 955 -------~~~~~-------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~ 1019 (1249)
T 3sfz_A 955 -------QIDYL-------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLI 1019 (1249)
T ss_dssp -------CEEEE-------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEE
T ss_pred -------eEEEc-------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEE
Confidence 11111 456799999999999999998 69999999999999999999999999999999 899999
Q ss_pred EEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001363 861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
+++.||.|++||+.+++.. .+.+|...|.+++|+|++ .+++++.||.|++||+.+++.. ....++.. .|.
T Consensus 1020 s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~~---~v~ 1089 (1249)
T 3sfz_A 1020 SSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQG---TVL 1089 (1249)
T ss_dssp EECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCSS---CCC
T ss_pred EEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccCC---cEE
Confidence 9999999999999998876 456799999999999975 6788999999999999987633 33334443 799
Q ss_pred EEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccc
Q 001363 941 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus 941 ~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
+++|+|||+++++ +.|++|++||+.+++++.. ..+|...|++++|||||++|++++.||+|++||+.+++....+.+.
T Consensus 1090 ~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~ 1168 (1249)
T 3sfz_A 1090 SCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168 (1249)
T ss_dssp CEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccc
Confidence 9999999999998 5889999999999988876 5689999999999999999999999999999999999887665322
Q ss_pred cccCC-CCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001363 1020 AYLRP-TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1020 ~~~~~-~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
..... ..|...|. +++|+| |+.++++++ |.|++||+.....
T Consensus 1169 ~~~~~~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1169 SVEEGTATHGGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp C-------CCSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred cccccccccCceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 21111 12445555 788999 578888885 9999999976553
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-57 Score=568.17 Aligned_cols=593 Identities=11% Similarity=0.092 Sum_probs=450.7
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
....||.+.|++++|+|+|+ +||+|+.||+|+|||..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34459999999999999998 79999999999999988766543 224788999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee---------
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT--------- 478 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~--------- 478 (1092)
|++|++++.|++|++||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++||++++++.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987655 443 678899999999999 8999999999999999988764
Q ss_pred --EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------------------CCceEEEEEc
Q 001363 479 --YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYS 538 (1092)
Q Consensus 479 --~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~i~~~~~s 538 (1092)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 234678999999999774 34689999999999 9999998877766654 3579999999
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeEEEE--Ee---ecc----------ccCCceEEEEEc----CCC-CEEEEEeC
Q 001363 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGD 598 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~~----~~~-~~l~~~s~ 598 (1092)
|+|++|++++. ++.|++||..+++.+.. +. .|. .+...|.+++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999987 66799999999987654 21 121 123579999995 443 45666766
Q ss_pred C-----CcEEEEECC------------------CCceEEEEeCCCCCCCCceEEEcc----------CCCEEEEEeCCCe
Q 001363 599 D-----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENR 645 (1092)
Q Consensus 599 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~ 645 (1092)
+ +.+.+|++. +++....+... +...+..+++.+ ++..+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899842 22334444321 123567777755 3457899999999
Q ss_pred EEEEECCCCceeee-------cccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001363 646 IKILETPESNSVDA-------AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 646 i~iw~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~ 718 (1092)
|++|++.++..... +..|...|+++++++ ...++|+....
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~---------------------------------~~~~~w~~~~~ 422 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS---------------------------------VPNKLWLGALS 422 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE---------------------------------EEHHHHHHHHH
T ss_pred EEEEECCCCCcccccccCCCcccccCCCeeEEEEEE---------------------------------cCHHHHHHHHh
Confidence 99999987744322 334455666666542 12344553221
Q ss_pred cCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecC--
Q 001363 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT-- 796 (1092)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l-- 796 (1092)
..... ..+..+|...+..++|+|+++.+++++.|++|++||+....... .. .....+
T Consensus 423 ~~~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~---------~~~~~l~~ 481 (902)
T 2oaj_A 423 AAQNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NA---------SFEVNLSR 481 (902)
T ss_dssp TTBCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TB---------CEEEEHHH
T ss_pred cccCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------Cc---------eEEeechh
Confidence 11111 11334577778889999999999999999999999987642100 00 000000
Q ss_pred -CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCc-----------------------------------------
Q 001363 797 -TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF----------------------------------------- 833 (1092)
Q Consensus 797 -~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~----------------------------------------- 833 (1092)
...+|...|.+++|+|||++||+++ ||+|+|||+.++
T Consensus 482 ~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (902)
T 2oaj_A 482 TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV 561 (902)
T ss_dssp HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCC
Confidence 0114888999999999999999998 799999999866
Q ss_pred ----eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeE-----eec-cccCCeEEEEEc-----CCC
Q 001363 834 ----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL 898 (1092)
Q Consensus 834 ----~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----pdg 898 (1092)
+++..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|++++|| |||
T Consensus 562 ~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg 639 (902)
T 2oaj_A 562 RQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG 639 (902)
T ss_dssp SEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS
T ss_pred CCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCC
Confidence 24677889999999999999 88 99999999999999999877653 343 899999999999 886
Q ss_pred ---CEEEEEeCCCcEEEEEc---CCCceeeeeeeecCCCCcC--CCCCceEEE-Ec----------------------cC
Q 001363 899 ---NILVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KD 947 (1092)
Q Consensus 899 ---~~l~s~s~Dg~I~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~l~-~s----------------------~d 947 (1092)
++|++++.|++|++||+ .+++... .+.++.. ..+.|.+++ |+ ++
T Consensus 640 ~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 714 (902)
T 2oaj_A 640 YSSILMVCGTDMGEVITYKILPASGGKFDV-----QLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIP 714 (902)
T ss_dssp SEEEEEEEEETTSEEEEEEEEECGGGCEEE-----EEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCC
T ss_pred CcceEEEEEecCCcEEEEEEecCCCCcEEE-----EecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCC
Confidence 89999999999999999 5655322 2222211 113566666 65 45
Q ss_pred CCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEE---E------EecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 948 QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 948 g~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
+.+|++ .+..|+||++.++++.+.. ..|...+.++ . |+++|..|++++.||+|++|++.+++.+..+..
T Consensus 715 ~~~l~~-~~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~ 792 (902)
T 2oaj_A 715 GIVLIT-GFDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI 792 (902)
T ss_dssp EEEEEE-CSSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred eEEEEE-eccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence 554444 4889999999999998875 4565666666 5 789999999999999999999999999988874
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-57 Score=550.39 Aligned_cols=556 Identities=11% Similarity=0.109 Sum_probs=468.2
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC----CcccceEEEcccccc-eeEEEEec--CCCcEEEEEEeCC
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD 464 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~~~~s~--d~~~l~l~s~~~d 464 (1092)
...|.+.|.+++|+|||++||+++ ++.|++||+.++ +... .+.+|... |++++|+| +++ +|++++.|
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d 87 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES 87 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence 346889999999999999999998 789999999987 4443 78899999 99999999 999 89999999
Q ss_pred CcEEEEECCCC--------ceeEEEecCCcCeEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCce
Q 001363 465 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC 532 (1092)
Q Consensus 465 ~~i~vwd~~~~--------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i 532 (1092)
|.|++||+.++ +.+..+..|..+|.+++|++ ++.+|++++.+ +.|++|| ..+....+..|...|
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI 163 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence 99999999855 67788899999999999965 67899999988 6788887 566777888899999
Q ss_pred EEEEEccCCC-EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC---ceEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 001363 533 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 533 ~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~s~dg~i~iwd~ 607 (1092)
.+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999998 6888775 6779999999999999999887 6 8999999999 999999999999999999
Q ss_pred CCCceEEEEeCC--CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccccc----CceeeeeecCCCccccc
Q 001363 608 NKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTGA 681 (1092)
Q Consensus 608 ~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~ 681 (1092)
.+++.+..+... .+...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 306 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA--------- 306 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE---------
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe---------
Confidence 999999888221 223569999999 99999999999999999999998887776653 33333333
Q ss_pred cccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEE
Q 001363 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 761 (1092)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w 761 (1092)
++++.+++++.++.+++|++........ ..+|...|.+++| |+ +++++.||.+++|
T Consensus 307 --------------~~~~~l~~~~~~g~i~~~d~~~~~~~~~------~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w 362 (615)
T 1pgu_A 307 --------------TGNGRIISLSLDGTLNFYELGHDEVLKT------ISGHNKGITALTV-NP---LISGSYDGRIMEW 362 (615)
T ss_dssp --------------EETTEEEEEETTSCEEEEETTEEEEEEE------ECCCSSCEEEEET-TT---TEEEETTSCEEET
T ss_pred --------------CCCCeEEEEECCCCEEEEECCCCcEEEE------EeCCCCCEEEEEe-cC---cEEECCCCeEEEE
Confidence 3688899999999999999875332221 1348899999999 88 9999999999998
Q ss_pred eecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEec
Q 001363 762 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM 840 (1092)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~ 840 (1092)
++. ++. .+|...|.+++| +++..+++++ |+.+++||+.+++...
T Consensus 363 ~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~--- 407 (615)
T 1pgu_A 363 SSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS--- 407 (615)
T ss_dssp TTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS---
T ss_pred Ech-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC---
Confidence 753 011 148899999999 5566666666 8999999998765432
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCc
Q 001363 841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWG 919 (1092)
Q Consensus 841 ~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iwd~~~~~ 919 (1092)
.+.+++++| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+++
T Consensus 408 ----~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~ 478 (615)
T 1pgu_A 408 ----QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE 478 (615)
T ss_dssp ----CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE
T ss_pred ----CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc
Confidence 678999999 88888877 88999999999999888887 88999999999 889999999 9999999999854
Q ss_pred eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEec----------
Q 001363 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC---------- 988 (1092)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~---------- 988 (1092)
... ....++.. .|.+++|+|+|++|++ +.|+.|++||+.+++.+..+...|...|++++|+|
T Consensus 479 ~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~ 551 (615)
T 1pgu_A 479 VSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI 551 (615)
T ss_dssp EEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred ccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccccc
Confidence 221 34444443 7999999999999999 57899999999999998875444999999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC-ceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 989 DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 989 dg~~l~t~~~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
|+++|++++.||+|++||+.++ +.+..+. .|...|. +++|+| ++. |++++.||.|++|++.
T Consensus 552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHKDGVN--NLLWET-PST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp SCCEEEEEETTSCEEEEESSCTTCCEEETT--------SSTTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred CCCEEEEEcCCCcEEEEECCCCceechhhh--------cCccceE--EEEEcC-CCC-eEEecCCceEEEEeee
Confidence 9999999999999999999998 5665544 2445555 678888 467 9999999999999985
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-56 Score=555.48 Aligned_cols=597 Identities=9% Similarity=0.041 Sum_probs=438.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..+|...|.+++|+|+|++||+|+.||+|+||+..+++... ...|...|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 55799999999999999999999999999999988764332 235788999999999 77 799999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-----------EEecCCCCceEEEEEccC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 540 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d 540 (1092)
+.+++++..+. |...|++++|++ ++.+|++|+.||.|++||+++.... .....|..+|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999999886 778999999965 6789999999999999999876643 123557789999999996
Q ss_pred C-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeec---------------cccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 541 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 541 g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
+ ..+++++. ++.| +||+.+++.+..+..+ ..|...|.+++|+|++.+|++++.||+|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777654 6779 9999999999888766 112367999999999999999999999999
Q ss_pred EECCCCceEEEEeC-----CC-----------CCCCCceEEEcc----CC-CEEEEEeCC-----CeEEEEECCC-----
Q 001363 605 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE----- 653 (1092)
Q Consensus 605 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iw~~~~----- 653 (1092)
||+.+++.+..... +. +...|.+++|++ ++ .++++++.+ +.+.+|++..
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988764221 21 123588999964 43 567777665 3788888431
Q ss_pred -------------Cceeeecc-cccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001363 654 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 654 -------------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~ 719 (1092)
.+....+. .+...+..+.+.+.......+ ..++..+++++.|+++++|++..+.
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g------------~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG------------CHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH------------TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC------------CCCceeEEEEcCCCcEEEEECCCCC
Confidence 11122222 234455555544321110000 1345578888899999999985332
Q ss_pred Cccc-cccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCC
Q 001363 720 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 720 ~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 798 (1092)
.... .........|...|.++++++... .+|+..... . +... ..+.
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~--~~l~- 432 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD--YLLK- 432 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC--CSCC-
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC--Cccc-
Confidence 1111 001111233567888888865432 234321100 0 0000 0122
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee--EE----ec-----CCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001363 799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LT----IM-----PPSPTATSLAFNPHDNNVIAIGMDDS 866 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~--~~----~~-----~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1092)
+|...+.+++|+||+++|++++ |++|++||+.++... .. +. +|...|.+++|+| |+++||+|+.||
T Consensus 433 -G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg 510 (902)
T 2oaj_A 433 -GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG 510 (902)
T ss_dssp -CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred -CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence 4777788899999999999998 899999999887421 11 11 7888999999999 999999999999
Q ss_pred cEEEEEcCCc---------------------------------------------eeeEeeccccCCeEEEEEcCCCCEE
Q 001363 867 TILIYNARSS---------------------------------------------EVISKLEGHSKRVTGLVFSDALNIL 901 (1092)
Q Consensus 867 ~v~iwd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~spdg~~l 901 (1092)
+|+||++.++ +++..+.+|.+.|++++||||| +|
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence 9999999876 2467888999999999999999 99
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeecCC-CCcCCCCCceEEEEc-----cCC---CEEEE-EeCCcEEEEEc---CCce
Q 001363 902 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELT 968 (1092)
Q Consensus 902 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~s-----~dg---~~la~-~~d~~i~lwd~---~~~~ 968 (1092)
|+|+.|++|+|||+.++.......+.... +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|+
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99999999999999886543221223343 5554 89999999 886 78888 68899999999 7888
Q ss_pred eeeeeccCC-----CCCEEEEE-Ee----------------------cCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 969 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 969 ~~~~~~~~h-----~~~v~~l~-fs----------------------~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
+...+ .+| .++|.+++ |+ ++|..|+++ +..|+||++.+++.......
T Consensus 667 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~-- 741 (902)
T 2oaj_A 667 FDVQL-MDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK-- 741 (902)
T ss_dssp EEEEE-EEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS--
T ss_pred EEEEe-cCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc--
Confidence 77663 344 47787777 76 455544443 77899999999988765531
Q ss_pred ccCCCCccccccceE-EE------ECCCCCCEEEEEeCCCcEEEEecCCCCCc
Q 001363 1021 YLRPTTSCLHVYPHA-IA------AHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1066 (1092)
Q Consensus 1021 ~~~~~~~~~~v~~~~-~~------~~p~d~~~l~~~~~dg~v~~w~~~~~~~~ 1066 (1092)
|...+..++ +. |++ ++..|++++.||+|++|++++.+..
T Consensus 742 ------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~ 787 (902)
T 2oaj_A 742 ------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQ 787 (902)
T ss_dssp ------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEE
T ss_pred ------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHH
Confidence 111122221 24 566 4789999999999999999887754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-48 Score=484.23 Aligned_cols=559 Identities=14% Similarity=0.175 Sum_probs=428.5
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
...+++.+|++.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEE
Confidence 34578899999999999999998 689999999999999999987765 6689999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~ 483 (1092)
+|+|++||+++.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ .|++++.||.|++||+.++ .....+.+
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 9999999999999999999999987555 6788999999999999999 7999999999999999987 67788899
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEcc--CCCEEEEEecCCCCceeEEEE
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw 560 (1092)
|...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+..++|+| ++.++++++. ++.|++|
T Consensus 139 ~~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~ 213 (814)
T 3mkq_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (814)
T ss_dssp CSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEE
T ss_pred CCCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEE
Confidence 9999999999652 56799999999999999998888777666554 7899999999 9999999875 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE-EEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LAV 639 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~ 639 (1092)
|..+++.+..+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++.. +++
T Consensus 214 d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEE
T ss_pred ECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEE
Confidence 999999999998887 899999999999999999999999999999999999887664 46899999999873 244
Q ss_pred EeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc---------
Q 001363 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS--------- 710 (1092)
Q Consensus 640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i--------- 710 (1092)
.+.++.+.+|+....... +.++ |+++.+++++.+...
T Consensus 289 ~~~~~~~~~~~~~~~~~~------------~~~~----------------------~~g~~~~~~~~~~~~~~~~~~~~~ 334 (814)
T 3mkq_A 289 SGFDNGFTVLSLGNDEPT------------LSLD----------------------PVGKLVWSGGKNAAASDIFTAVIR 334 (814)
T ss_dssp EEETTEEEEEECSCCSCC------------EEEC----------------------SSSEEEEECCTTSCTTCEEEEECC
T ss_pred EEeCCCEEEEEcCCCCce------------eEEC----------------------CCCCEEEECcccccceeeeeeecc
Confidence 445677889987655322 2232 445555544433321
Q ss_pred ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc
Q 001363 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790 (1092)
Q Consensus 711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 790 (1092)
..|++............. ..+...+.+++|+|+|+.+++++ +|.+.+|++....
T Consensus 335 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~----------------------- 388 (814)
T 3mkq_A 335 GNEEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR----------------------- 388 (814)
T ss_dssp SCCCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE-----------------------
T ss_pred cccccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc-----------------------
Confidence 012222111111111111 22556788999999999888887 8999999853211
Q ss_pred eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC---CEEEEEeCCC
Q 001363 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDDS 866 (1092)
Q Consensus 791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~lasg~~dg 866 (1092)
. .+...+.+++|+||++++++++ ++.+++|+. +.+|...+.+++|+| ++ .+|++++.|+
T Consensus 389 -~-------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~ 451 (814)
T 3mkq_A 389 -N-------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSDG 451 (814)
T ss_dssp -E-------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEETT
T ss_pred -c-------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecCC
Confidence 0 1345678999999999999997 699999963 345777889999999 77 5888899999
Q ss_pred cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE------eCCCcEEEEEcCC---------------Cceeeeee
Q 001363 867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCRS 925 (1092)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~------s~Dg~I~iwd~~~---------------~~~~~~~~ 925 (1092)
.|++||+.+++.+..+.+|.. .++|+|||++|+++ +.++.+.+|--.. +.......
T Consensus 452 ~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (814)
T 3mkq_A 452 FVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDV 528 (814)
T ss_dssp EEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEE
T ss_pred EEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheee
Confidence 999999999999999998875 89999999999999 6666555554210 00000111
Q ss_pred eecCCCCcCCCCCceEEEEccCCCEEEEEe-CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 001363 926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~v 1004 (1092)
+.... ..+.+..|. +..++... .+.+..+- .++... .......+..+.|.+++..++....++.+..
T Consensus 529 ~~~~~------~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 596 (814)
T 3mkq_A 529 LYELS------ESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVYG 596 (814)
T ss_dssp EEEEC------SCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEEE
T ss_pred eeEec------cEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEEE
Confidence 11111 135556664 34443332 34444432 222211 1123556777778899999999999999999
Q ss_pred EEcCCC
Q 001363 1005 HEASNL 1010 (1092)
Q Consensus 1005 wd~~~~ 1010 (1092)
|++...
T Consensus 597 ~~l~~~ 602 (814)
T 3mkq_A 597 YEISLE 602 (814)
T ss_dssp EECCHH
T ss_pred EEECcH
Confidence 998644
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-46 Score=470.16 Aligned_cols=479 Identities=15% Similarity=0.183 Sum_probs=392.9
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|+|||++||+++.||.|+|||+.+++.+. .+.+|.++|.+++|+|+++ +|++++.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999986555 6779999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 549 (1092)
+.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999965 6689999999999999999987 45567788889999999999 8889999876
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
++.|++||+.++.....+..+. ...+..++|+| ++.++++++.||.|++||+.+++.+..+..+. ..|.+
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~ 233 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence 6679999999888877777654 47899999999 99999999999999999999999998888664 46899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc-eeecc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE-ISVEA 706 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~s~~~ 706 (1092)
++|+|+++++++++.||.|++|+..+++....+..+...+.+++++ |++..+ ++.+.
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~ 291 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH----------------------PTGRKNYIASGF 291 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC----------------------TTCGGGEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc----------------------cCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999997 455433 55666
Q ss_pred ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCee-EEEeecCCCcCcCcccccccCCccccC
Q 001363 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1092)
Q Consensus 707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1092)
++.+.+|++... ...+.++|+|+.+++++.+... .++.... ...|+.
T Consensus 292 ~~~~~~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 339 (814)
T 3mkq_A 292 DNGFTVLSLGND------------------EPTLSLDPVGKLVWSGGKNAAASDIFTAVI--------------RGNEEV 339 (814)
T ss_dssp TTEEEEEECSCC------------------SCCEEECSSSEEEEECCTTSCTTCEEEEEC--------------CSCCCC
T ss_pred CCCEEEEEcCCC------------------CceeEECCCCCEEEECcccccceeeeeeec--------------cccccc
Confidence 777888875421 2346789999988877665321 1111100 011333
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001363 786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 786 ~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
..+............+...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +++++|+++.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~ 413 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDET 413 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTT
T ss_pred ccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCC
Confidence 3332221111111136677899999999999999999999999987654432 35678999999 89999999999
Q ss_pred CcEEEEEcCCceeeEeeccccCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEE
Q 001363 866 STILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942 (1092)
Q Consensus 866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 942 (1092)
|.|++|+ .+.+|...+.+++|+||+ ++|++++.|+.|++||+.+++ .+.....+. ..+
T Consensus 414 g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~v 474 (814)
T 3mkq_A 414 GQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KDV 474 (814)
T ss_dssp CCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EEE
T ss_pred CcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CEE
Confidence 9999995 345688889999999998 689999999999999999865 333333332 389
Q ss_pred EEccCCCEEEEE------eCCcEEEEEc
Q 001363 943 QFHKDQTRFLLV------HETHLAIYEA 964 (1092)
Q Consensus 943 ~~s~dg~~la~~------~d~~i~lwd~ 964 (1092)
+|+|||++|+++ .++.+.++..
T Consensus 475 ~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 475 IWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 999999999997 6667776644
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=421.77 Aligned_cols=288 Identities=22% Similarity=0.368 Sum_probs=267.3
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
..|.+|.+.|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|...|.+++|+|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~ 161 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS 161 (410)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence 45789999999999999998 799999999999999999987765 7789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++.++..+.+|...
T Consensus 162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 9999999999999999999886555 6789999999999999999 8999999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC--------------------CCEEEEE
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC 547 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------g~~l~~~ 547 (1092)
|.++.++ +++.+|++++.||+|++||+.+......+..|...|.+++|+|+ |.+++++
T Consensus 237 v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 237 VRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 9999985 47789999999999999999999998999999999999999996 6689998
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++.+..+..|. ..|.+
T Consensus 315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~ 385 (410)
T 1vyh_C 315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTS 385 (410)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEE
T ss_pred eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEE
Confidence 86 6679999999999999999988 899999999999999999999999999999999999988664 46999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEC
Q 001363 628 ICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
++|+|++.+|++|+.||+|++|+.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=363.29 Aligned_cols=296 Identities=19% Similarity=0.269 Sum_probs=266.6
Q ss_pred CcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001363 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
+....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~ 103 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC 103 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence 3456789999999999999999998 799999999999999999987764 56799999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCc-ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+|+|+|++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+
T Consensus 104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999999987643 233446789999999999999875 889999999999999999999999
Q ss_pred ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001363 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
.+|...|.+++|++ ++.++++|+.||.|++||+++......+..|...|.+++|+|+++++++++. ++.|++||
T Consensus 181 ~~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd 254 (340)
T 1got_B 181 TGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD 254 (340)
T ss_dssp CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence 99999999999965 6689999999999999999999999999999999999999999999999986 66799999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
+.+++.+..+.... ....|.+++|+|+++++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+|.+|++++
T Consensus 255 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 255 LRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp TTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEE
T ss_pred CCCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEc
Confidence 99998877765322 23579999999999999999999999999999999999888664 4699999999999999999
Q ss_pred CCCeEEEEE
Q 001363 642 NENRIKILE 650 (1092)
Q Consensus 642 ~dg~i~iw~ 650 (1092)
.|+.|++||
T Consensus 332 ~D~~i~iWd 340 (340)
T 1got_B 332 WDSFLKIWN 340 (340)
T ss_dssp TTSCEEEEC
T ss_pred CCccEEecC
Confidence 999999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=363.77 Aligned_cols=298 Identities=17% Similarity=0.243 Sum_probs=268.4
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
....++|.+|++.|++++|+||++ +||+|+.||+|+|||..+++.... +..|...|.+++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~ 113 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACA 113 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEE
Confidence 456789999999999999999998 699999999999999999887654 556889999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCc---ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
|+|+|++||+|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++||+++++.+..
T Consensus 114 ~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~ 191 (354)
T 2pbi_B 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQS 191 (354)
T ss_dssp ECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEE
Confidence 999999999999999999999875421 223446778999999999999999 799999999999999999999999
Q ss_pred EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001363 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
+.+|...|.++++++.+++.+|++|+.||.|++||+++++....+..|...|.+++|+|+++++++++. ++.|++|
T Consensus 192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lw 267 (354)
T 2pbi_B 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLY 267 (354)
T ss_dssp EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEE
T ss_pred EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEE
Confidence 999999999999998878899999999999999999999999999999999999999999999999986 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1092)
|+.+++.+..+..+. ....+.+++|+|++.++++|+.|++|++||+.+++.+..+..|. ..|.+++|+|+|++|+++
T Consensus 268 d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 268 DLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp ETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEEE
T ss_pred ECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEEE
Confidence 999988877766433 23478999999999999999999999999999999988887654 569999999999999999
Q ss_pred eCCCeEEEEE
Q 001363 641 ANENRIKILE 650 (1092)
Q Consensus 641 ~~dg~i~iw~ 650 (1092)
+.|+.|++|+
T Consensus 345 s~D~~v~vW~ 354 (354)
T 2pbi_B 345 SWDHTLRVWA 354 (354)
T ss_dssp ETTSEEEEEC
T ss_pred cCCCCEEecC
Confidence 9999999995
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=360.64 Aligned_cols=294 Identities=15% Similarity=0.235 Sum_probs=265.5
Q ss_pred ceeeecccCCCCceEEeecCC----CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spd----g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
.+...+.+|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++.... ..+.+|...|.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~ 84 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVV 84 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEE
Confidence 445778899999999999985 44 799999999999999987654321 12779999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+++++....
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEE
Confidence 99999999999999999999999999986554 6778889999999999999 899999999999999999999999
Q ss_pred EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001363 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
+..|...|.+++|++ ++.+|++++.||.|++||+.+++....+..+..+|.+++|+|++++|++++. ++.|++|
T Consensus 160 ~~~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iw 233 (321)
T 3ow8_A 160 LDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIY 233 (321)
T ss_dssp EECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEE
T ss_pred ecCCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 999999999999955 7789999999999999999999888899999999999999999999999976 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1092)
|+.+++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++++..+..+. ..|.+++|+|++++|+++
T Consensus 234 d~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 234 DVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp ETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEE
T ss_pred ECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEE
Confidence 999999999999888 899999999999999999999999999999999999987654 469999999999999999
Q ss_pred eCCCeEEEEECC
Q 001363 641 ANENRIKILETP 652 (1092)
Q Consensus 641 ~~dg~i~iw~~~ 652 (1092)
+.||.|++||.+
T Consensus 309 ~~d~~i~vwd~p 320 (321)
T 3ow8_A 309 GDDQEIHIYDCP 320 (321)
T ss_dssp ETTCCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 999999999964
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=352.33 Aligned_cols=293 Identities=18% Similarity=0.309 Sum_probs=257.6
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
...++|.+|++.|++++|+|||+ +|++|+.||+|+|||+.++..+.. +.+|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 45678999999999999999998 689999999999999999887764 6679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~ 483 (1092)
+|++++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||++++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987655 6889999999999999999 8999999999999999987 45577899
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEcc--CCCEEEEEecCCCCceeEEEE
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw 560 (1092)
|...|.+++|+|. ++.+|++|+.||+|++||+........+. .+...+..+.|+| ++.+|++++. ++.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999764 45799999999999999998877666554 4556888899986 7789999986 6779999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC--EEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 638 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 638 (1092)
|+.+++++..+.+|. ..|.+++|+|++++|++|+.||+|++||..+++.+..+..+. ..+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEE
T ss_pred eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEE
Confidence 999999999999988 899999999999999999999999999999999999987653 4688999999875 577
Q ss_pred EEeCCCeEEEEECCC
Q 001363 639 VIANENRIKILETPE 653 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~ 653 (1092)
+|+.| .+.+|++..
T Consensus 289 sg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEETT-EEEEEECC-
T ss_pred EecCC-ceEEEEecc
Confidence 77665 567777654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=352.53 Aligned_cols=301 Identities=19% Similarity=0.239 Sum_probs=259.4
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+..+|.||++.|++++|+|++..+|++|+.|++|++||+.+....... ....+.+|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEE
Confidence 3557899999999999999977448999999999999998754332111 11237799999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+|||++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||+. ++++..+.+|
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h 147 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH 147 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence 9999999999999999999999987554 6789999999999999999 89999999999999975 6678889999
Q ss_pred CcCeEEEeecccC----CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001363 485 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 485 ~~~v~~i~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
...|.++.+.+.. ++.++++++.|+.|++||++..+....+..|...|.+++|+|+|++|++++. ++.|++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw 223 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW 223 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence 9999999997643 4568999999999999999998888889999999999999999999999986 6789999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC------CCCCCceEEEccCC
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG 634 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~ 634 (1092)
|+.+++.+..+..+ ..|.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|+|
T Consensus 224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 298 (319)
T 3frx_A 224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298 (319)
T ss_dssp ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence 99999999888764 479999999999998888765 59999999888777765331 22457799999999
Q ss_pred CEEEEEeCCCeEEEEECCCC
Q 001363 635 TLLAVIANENRIKILETPES 654 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++|++++.||.|++|++.++
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEeecCceEEEEEEeec
Confidence 99999999999999998653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=366.74 Aligned_cols=306 Identities=17% Similarity=0.256 Sum_probs=265.6
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..+.++|.||++.|++++|+|+|+ +|++|+.|++|+|||+.+++.... +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 456789999999999999999998 699999999999999999887764 667999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCc----ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999975421 1222357799999999999998654 69999999999999999999998
Q ss_pred EE-----ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001363 480 SF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 480 ~~-----~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
.+ .+|...|.++++++. ++.+|++|+.||+|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 87 679999999998653 567999999999999999984 4667788899999999999999999999986
Q ss_pred ceeEEEEeCCCCeEEEEEeecccc----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC--CCCCCCCce
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPR 627 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 627 (1092)
++.|++||+.+++.+..+..+... ...|.+++|+|+++++++|+.||.|++||..+++.+..+.. .++...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 667999999999998888765411 13488999999999999999999999999999998877732 234567999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
++|+|+|++|++|+.|+.|++|++...+
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999999987653
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=362.01 Aligned_cols=286 Identities=18% Similarity=0.287 Sum_probs=267.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|..+|++++|+|++++|++|+.|++|+|||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 66899999999999999999999999999999999987665 7889999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.+++++..+.+|...|.+++|++ ++.+|++|+.|++|++||+.++.....+..|...+.++.++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999966 5679999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|++|++||+.++.
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 5679999999999999998887 89999999996 6789999999999999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeec
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1092)
++..+..|. ..|.+++|+|++++|++++.||.|++||..+++.+..+.+|...|.+++|+
T Consensus 330 ~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------ 389 (410)
T 1vyh_C 330 CLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------ 389 (410)
T ss_dssp EEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred eEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence 999988664 468999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCccceeeccccccceecc
Q 001363 692 EDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 692 ~~~s~d~~~l~s~~~d~~i~lw~~ 715 (1092)
|++.++++++.|++|++|+.
T Consensus 390 ----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 ----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----SSSSCEEEEETTSEEEEEC-
T ss_pred ----CCCCEEEEEeCCCcEEEEeC
Confidence 67889999999999999985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=360.59 Aligned_cols=320 Identities=16% Similarity=0.205 Sum_probs=231.1
Q ss_pred ceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCC
Q 001363 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 780 (1092)
Q Consensus 701 l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 780 (1092)
++.++.+.....|++....+ ..|...|.+++|+|||++|++++.|. +++||- .+
T Consensus 19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~v 72 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------SI 72 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------EE
T ss_pred EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------eE
Confidence 34455567778888653322 24888999999999999999998743 233431 23
Q ss_pred ccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeE----EecCCCCCeEEEEEcCCCC
Q 001363 781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDN 856 (1092)
Q Consensus 781 ~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~ 856 (1092)
++|+..++...........+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+| ++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg 151 (357)
T 4g56_B 73 WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DG 151 (357)
T ss_dssp EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SS
T ss_pred EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CC
Confidence 334444433222221222248889999999999988877778999999999877543 3457899999999999 89
Q ss_pred CEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001363 857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
++|++|+.||.|++||+.+++++..+.+|...|++++|+|++. ++++++.|++|++||+.+++.... + ....+.
T Consensus 152 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--~-~~~~~~-- 226 (357)
T 4g56_B 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--I-DFCASD-- 226 (357)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB--C-CCTTCC--
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee--e-eecccc--
Confidence 9999999999999999999999999999999999999999875 789999999999999988653321 1 111222
Q ss_pred CCCceEEEEccCC-CEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCce
Q 001363 936 APSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 936 ~~~v~~l~~s~dg-~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
..+.+++|+|++ .+|++ +.|+.|++||+.+++++.. +.+|...|++++|+|++ ++|++|+.||+|+|||+.+++.
T Consensus 227 -~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 227 -TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp -SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred -ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 368999999985 56777 5789999999999998877 56899999999999997 5799999999999999999987
Q ss_pred EEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001363 1013 QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
+..+. |...|. +++|+|.|+.+|++++.||+|++|+++..+.
T Consensus 305 ~~~~~---------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 305 FRDLS---------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEECC---------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred eEECC---------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 75432 455565 7889997789999999999999999976654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-38 Score=347.32 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=263.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|+||+++|++|+.|++|++||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999886554 6778999999999999999 899999999999999
Q ss_pred CCCC----ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 472 ~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
+.++ +....+.+|...|.++.|.+. + .+++++.||+|++||+.++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9876 355778899999999999653 3 59999999999999999999888999999999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|+++++++|+.||+|++||+.+++.+..+..+.....|.+
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 86 6679999999999999999888 8999999999999999999999999999999998888775555456899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++|+|+|+++++|+.|+.|++||..++..+..+.+|...|.+++++ |++.++++++.|
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D 333 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD 333 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999996 789999999999
Q ss_pred cccceec
Q 001363 708 NKSEVEK 714 (1092)
Q Consensus 708 ~~i~lw~ 714 (1092)
++|++|+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=349.90 Aligned_cols=306 Identities=15% Similarity=0.240 Sum_probs=250.5
Q ss_pred ceeeecccCCC-CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 325 TVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~-~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.++.+|.+|.+ .|++++|+|||+ +||+|+.|++|+|||+.++..... .....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence 56788999988 999999999998 699999999999999988754321 112468999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc---eeEE
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYS 480 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~ 480 (1092)
|+|+|++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++. ++..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987642 23347889999999999999999 89999999999999998763 4667
Q ss_pred EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
+.+|...|.+++|+| ++.+|++++.|++|++||...... ...+..|...|.+++|+|+|++|++++. ++.|+
T Consensus 146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVR 219 (345)
T ss_dssp ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEE
T ss_pred ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEE
Confidence 889999999999965 567999999999999999987653 4577889999999999999999999986 66799
Q ss_pred EEeCCCC---------------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-------EEEE
Q 001363 559 EWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-------LTTI 616 (1092)
Q Consensus 559 iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~-------~~~~ 616 (1092)
+||.... .++..+.+. |...|.+++|+|++..+++++.|+.|++|+...+.. ....
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 9986321 233444442 247899999999999999999999999999875421 1111
Q ss_pred eCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCceee
Q 001363 617 DAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
...++...|.+++|+|++ .+|++++.||+|++|+..+++...
T Consensus 298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 122445679999999987 599999999999999998876543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-38 Score=343.83 Aligned_cols=288 Identities=16% Similarity=0.246 Sum_probs=263.4
Q ss_pred ecCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 392 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+.+|.+.|.+++|+|+ +++|++|+.|++|+||++.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5689999999999985 67999999999999999987643 22336889999999999999999 89999999999
Q ss_pred EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
++||+.+++.+..+..|...+.+++|+| ++.+|++++.||.|++|++++......+..+...+.+++|+|+|++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999955 67899999999999999999999988888888999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.|++|++||+.+++....+..|. ..|.+
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~ 253 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA--SWVLN 253 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS--SCEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC--CceEE
Confidence 86 5669999999999999999887 899999999999999999999999999999999998887664 46899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+ |+++.+++++.|
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d 311 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD 311 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999996 788899999999
Q ss_pred cccceecc
Q 001363 708 NKSEVEKP 715 (1092)
Q Consensus 708 ~~i~lw~~ 715 (1092)
++|++||.
T Consensus 312 ~~i~vwd~ 319 (321)
T 3ow8_A 312 QEIHIYDC 319 (321)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEeC
Confidence 99999995
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=338.24 Aligned_cols=295 Identities=18% Similarity=0.310 Sum_probs=261.3
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
....++.+|.+.|++++|+|+|+ +|++|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 45678899999999999999998 689999999999999999887654 6789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+|++++|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++||+.+++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987554 6789999999999999999 8999999999999999999999999999
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
..+|.+++|++ ++.+|++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 99999999965 66899999999999999999888766554 45567999999999999999986 6679999999
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe--
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-- 641 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-- 641 (1092)
+++.+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEcc
Confidence 999999998877332334444445778899999999999999999999999988664 4689999999999999997
Q ss_pred CCCeEEEEECC
Q 001363 642 NENRIKILETP 652 (1092)
Q Consensus 642 ~dg~i~iw~~~ 652 (1092)
.|+.|++|+..
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=352.25 Aligned_cols=295 Identities=13% Similarity=0.154 Sum_probs=239.0
Q ss_pred cccCCCCceEEeecCCCceEEEEEcC------CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..+|+..|++++|||||+ +||+|+. |++|++|+..++........ ...+|...|.+++
T Consensus 38 p~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~ 101 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVA 101 (357)
T ss_dssp --CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEE
T ss_pred cccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEE
Confidence 357999999999999998 6889887 67899998887764432111 1446899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccc-eEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
|+|++++| +++.||+|+|||+.+++.... .....+|...|.+++|+|+++ +|++|+.|++|++||+.+++.+..+.
T Consensus 102 ~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~ 178 (357)
T 4g56_B 102 WVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYN 178 (357)
T ss_dssp EETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 99998655 577899999999998865432 224568999999999999999 89999999999999999999999999
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCC-CEEEEEecCCCCceeEEE
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANG-RRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~i 559 (1092)
+|...|++++|++..+ .++++++.||+|++||+++.+....+. .+...+.+++|+|++ .++++++. ++.|++
T Consensus 179 ~h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~ 253 (357)
T 4g56_B 179 AHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSL 253 (357)
T ss_dssp CCSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEE
T ss_pred CCCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeE
Confidence 9999999999976533 478999999999999999887765443 455679999999985 56777765 566999
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEE
Q 001363 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLL 637 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l 637 (1092)
||+.+++.+..+.+|. ..|.+++|+|++ ++|++|+.|++|+|||+++++.+..+. +...|.+++|+| ++.+|
T Consensus 254 wd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 254 VNIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp EESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEE
T ss_pred EECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEE
Confidence 9999999999999888 899999999987 578899999999999999998877653 345699999998 89999
Q ss_pred EEEeCCCeEEEEECCCC
Q 001363 638 AVIANENRIKILETPES 654 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~~~ 654 (1092)
++++.||+|++|++...
T Consensus 328 ~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEEECC--
T ss_pred EEEcCCCeEEEEECCCC
Confidence 99999999999999764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=344.24 Aligned_cols=299 Identities=14% Similarity=0.116 Sum_probs=239.4
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeeccccc-ceeeEeeecCCCCcEEEEEECCCCC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS-MLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~-~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
..|...|.+++|||||+ +|++++ |+++++||... .+|+..... ..-.......|...|.+++|+||+
T Consensus 27 ~~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~- 94 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER- 94 (344)
T ss_dssp SSCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred ccccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence 35667899999999998 677776 77888887321 112110000 000001122367789999999985
Q ss_pred EEEEEeCCCEEEEEEccCCCcccce-EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
+|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|||+ +|++|+.|++|++||+.+++++..+.+|...|
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 6889999999999999998876532 24568999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCC
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.+++|++.. ..+|++++.||+|++||+++.+....+. .+...+.+++|+|++ +++++++. ++.|++||++++
T Consensus 173 ~~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~ 247 (344)
T 4gqb_B 173 TCVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKST 247 (344)
T ss_dssp EEEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC-
T ss_pred EEEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCC
Confidence 999997653 2588999999999999999988877664 345578999999954 56777765 677999999999
Q ss_pred eEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANE 643 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~d 643 (1092)
+.+..+.+|. ..|.+++|+|++ ++|++|+.|++|++||+.++++.. +.. +...|.+++|+|+++ +|++++.|
T Consensus 248 ~~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~--H~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 248 SCVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQA--HRDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp -CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECC--CSSCEEEEEECSSSTTEEEEEETT
T ss_pred cEEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcC--CCCCEEEEEEeCCCCeEEEEEcCC
Confidence 9999999988 899999999998 578899999999999999987654 443 445799999999886 67789999
Q ss_pred CeEEEEECCCC
Q 001363 644 NRIKILETPES 654 (1092)
Q Consensus 644 g~i~iw~~~~~ 654 (1092)
++|++|++.+.
T Consensus 322 ~~v~~w~v~~~ 332 (344)
T 4gqb_B 322 HQVVHHVVPTE 332 (344)
T ss_dssp SCEEEEECCC-
T ss_pred CeEEEEECCCC
Confidence 99999999865
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-38 Score=347.05 Aligned_cols=296 Identities=13% Similarity=0.158 Sum_probs=227.6
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
+...|.+++|+|||+.+++++ |+.+++|+.... +|+................+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 566799999999999777665 778888874211 1111000000000000002567899999999
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeeEE----ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCC
Q 001363 813 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 888 (1092)
Q Consensus 813 dg~~l~~~sdg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 888 (1092)
++.+++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 97655444489999999998876544 448999999999999 8999999999999999999999999999999999
Q ss_pred eEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC-CCEEEE-EeCCcEEEEEcC
Q 001363 889 VTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAE 965 (1092)
Q Consensus 889 V~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~-~~d~~i~lwd~~ 965 (1092)
|++++|+|++ .+|++++.|++|++||+.+++.... +.. ..+. ..+.+++|+|+ +.+|++ +.|++|++||+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 9999999998 4789999999999999998763331 111 1111 25889999995 567777 578999999999
Q ss_pred CceeeeeeccCCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCC
Q 001363 966 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus 966 ~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1044 (1092)
+++++.. +.+|...|++++|+||| ++|++|+.|++|+|||+.++++.. +. .|...|. +++|+|++..
T Consensus 246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~~V~--~v~~sp~~~~ 313 (344)
T 4gqb_B 246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRDFVR--DATWSPLNHS 313 (344)
T ss_dssp C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSSCEE--EEEECSSSTT
T ss_pred CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCCCEE--EEEEeCCCCe
Confidence 9999887 56899999999999998 589999999999999999987653 22 2556665 7889996666
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 001363 1045 QFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1045 ~l~~~~~dg~v~~w~~~~~ 1063 (1092)
+|++++.||+|++|+++..
T Consensus 314 llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEETTSCEEEEECCC-
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 7889999999999999654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=355.01 Aligned_cols=334 Identities=13% Similarity=0.180 Sum_probs=281.8
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEec----CCCCe------eEEeeeeeeecccccceee-EeeecCCCCcEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQK------LFIRNFKVWDIGACSMLFK-TALVRDPGVSVN 400 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~----~~~~~------~~~~~~~~~d~~~~~~~~~-~~~l~~h~~~V~ 400 (1092)
.|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++. ...... ++. .....+|...|.
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~ 112 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH----------PFALSASSGKTTNQVT 112 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC----------CCCCC------CBCEE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc----------cccccccccCCCCceE
Confidence 456899999999999845899999999999999 88873 221100 000 001223788999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+++|+|++++|++++.|+.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEE
Confidence 999999999999999999999999 4444333 6789999999999999999 899999999999999999999999
Q ss_pred EecCCcC---------------eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001363 481 FEGHGAP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 481 ~~~~~~~---------------v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+..+... +.+++|++. ..+++++.||.|++||+........+..+...+.+++|+|++++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp ECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 9888877 888888653 4699999999999999999988888889999999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
+++. ++.|++||..+++.+..+.+|. ..+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+. ..+
T Consensus 264 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i 333 (425)
T 1r5m_A 264 SASD----DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPI 333 (425)
T ss_dssp EEET----TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCE
T ss_pred EEcC----CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccE
Confidence 9986 5669999999999998888877 899999999999 99999999999999999999998888654 468
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCc--------------------eeeecccccC--ceeeeeecCCCccccccc
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~--------------------~~~~~~~~~~--~v~~~~~~~~~~~~~~~~ 683 (1092)
.+++|+|++++|++++.||.|++|++.++. .+..+..|.. .|.+++|+
T Consensus 334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---------- 403 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN---------- 403 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC----------
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc----------
Confidence 999999999999999999999999999877 7788888866 88888886
Q ss_pred cCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|+++++++++.|+.+++|++.
T Consensus 404 ------------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 ------------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------------TTSSEEEEEESSSCCEEEECC
T ss_pred ------------CCCceEEEEecCceEEEEeec
Confidence 788899999999999999964
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=339.12 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=261.2
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|...|.+++|+||+++||+|+.|++|++||..+++... .+..|...|.+++|+|+|. .+++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77899999999999999999999999999999998876544 5678899999999999999 899999999999999
Q ss_pred CCCC------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc--CCCE
Q 001363 472 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 543 (1092)
Q Consensus 472 ~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~ 543 (1092)
+... .....+.+|...|.+++|++ ++..|++++.||+|++||+++++....+..|...|.+++++| +|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 34577889999999999965 567999999999999999999999999999999999999987 5789
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
+++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|+++++++++.|++|++||+.+++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 5679999999999999998888 899999999999999999999999999999998887776655445
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
.+.+++|+|+++++++++.|+.|++||+.++..+..+.+|...|.+++|+ ||++++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s 343 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS 343 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence 67899999999999999999999999999999999999999999999996 78999999
Q ss_pred eccccccceec
Q 001363 704 VEAENKSEVEK 714 (1092)
Q Consensus 704 ~~~d~~i~lw~ 714 (1092)
++.|+++++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999995
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=336.79 Aligned_cols=296 Identities=17% Similarity=0.195 Sum_probs=234.8
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeee-cC-CCCcEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RD-PGVSVNRV 402 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l-~~-h~~~V~~l 402 (1092)
.++++|.+|++.|++++|+|+ +||+|+.|++|+|||+.++...... .+ .+ |...|.++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~v 64 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRSV 64 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEEE
Confidence 467889999999999999997 6899999999999999876422110 13 34 99999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCC----cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC----
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---- 474 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---- 474 (1092)
+|+|++++||+|+.|++|+|||+..+. .......+.+|...|.+++|+|+++ +|++|+.|++|++||+..
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence 999999999999999999999996432 1233446789999999999999999 899999999999999943
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEccC--CCEEEEEecC
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTS 550 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~~ 550 (1092)
.+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++.
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred eEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 256788899999999999966 5689999999999999998765 456678889999999999998 678999886
Q ss_pred CCCceeEEEEeCCCC--------eEEEEEee-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEeCC
Q 001363 551 KEGESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG 619 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~ 619 (1092)
++.|++||+.++ .....+.+ |. ..|.+++|++++ .+++++.||.|++|+..+++. .... ..
T Consensus 220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~ 291 (330)
T 2hes_X 220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-AL 291 (330)
T ss_dssp ---TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SC
T ss_pred ---CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cc
Confidence 667999998765 33444443 44 889999999765 899999999999999988743 3222 12
Q ss_pred CCCC-CCceEEEcc--CCCEEEEEeCCCeEEEEECCC
Q 001363 620 GGLP-ENPRICFNK--NGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 620 ~~~~-~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
.+.. .|.+++|+| ++++|++++.||.|++|++..
T Consensus 292 ~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2333 689999999 789999999999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-37 Score=340.22 Aligned_cols=302 Identities=17% Similarity=0.271 Sum_probs=244.8
Q ss_pred cceeeecccCCCCceEEee-----cC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001363 324 KTVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~-----sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
..+..+|.||++.|++++| +| |++ +|++|+.|++|+|||+.+++.... .......+.+|..
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~ 77 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCC
Confidence 3466889999999999999 77 887 799999999999999986543210 0011123789999
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
.|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.. ..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~ 151 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-EC 151 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cc
Confidence 99999999999999999999999999999987554 6789999999999999999 899999999999999874 44
Q ss_pred eEEEe---cCCcCeEEEeecccCC--------ccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 478 TYSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 478 ~~~~~---~~~~~v~~i~~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
..... +|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence 43443 7889999999976532 268999999999999994 44556677889999999999999999999
Q ss_pred EecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--EEeCC----
Q 001363 547 CGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG---- 619 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~---- 619 (1092)
++. ++.|++||+.+ ......+. +. ..|.+++|+|++.++++ +.|+.|++||+.+++... .+...
T Consensus 231 gs~----dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 231 GGK----DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp EET----TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred EcC----CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence 986 67799999944 33433332 23 57999999999887664 457889999998876543 33311
Q ss_pred -----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 620 -----GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 620 -----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 34456889999999999999999999999997653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=379.80 Aligned_cols=523 Identities=13% Similarity=0.065 Sum_probs=378.1
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
+...+.+++|||+ + ||.++. +.|++|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3558899999964 3 454444 789999999887543 667999999999999999999
Q ss_pred EEeCC------CEEEEEEccCCCcccceEEEcccccce-------eEEEEecCCCcEEEEEEeCC------CcEEEEECC
Q 001363 413 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV 473 (1092)
Q Consensus 413 s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~ 473 (1092)
+++.+ ..|++|++.+++. ..+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 4799999988752 2577888888 9999999998 67777754 458888887
Q ss_pred CCceeEEEecCCcCeEEEeecccCCccEEEEEec------------CCeEEEEEcCCCCceEEecCCCCceEEEEEccCC
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg 541 (1092)
+++... +..+ ....++|++ | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~~-l~~~--~~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFVP-LNLG--PATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEEE-CCSC--SCSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeEE-ecCC--CcceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 776543 3333 234556754 5 7888753 345677765444555566788889999999988
Q ss_pred CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 001363 542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
..++++.. ++.+.+|.... +.....+..+. .+...+|+|+|++++.+. ++.|++|++.... +..+..+.
T Consensus 215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~ 284 (1045)
T 1k32_A 215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGD 284 (1045)
T ss_dssp EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCC
T ss_pred EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCc
Confidence 44444432 33355555432 33334444443 355679999999988874 8999999995444 33444321
Q ss_pred ---------CCCCCceEEEc-cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceee
Q 001363 621 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1092)
Q Consensus 621 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 690 (1092)
+...+..++|+ |||+++++++ ++.+.+|+...+.... +.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~----------------------------- 333 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP----------------------------- 333 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence 11247899999 9999999888 7889999877553221 10
Q ss_pred cCCCCCCCccceeeccccccceeccccccCccccccccCCccccc-cEEEEEEecCCcEEEEeecCCeeE-EEeecCCCc
Q 001363 691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL 768 (1092)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~i~-~w~~~~~~~ 768 (1092)
.+.. .+..++|+ ||+.++.++.++.+. +|++..
T Consensus 334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~--- 368 (1045)
T 1k32_A 334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT--- 368 (1045)
T ss_dssp -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT---
T ss_pred -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC---
Confidence 0233 57788899 999888888776666 666432
Q ss_pred CcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeE
Q 001363 769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT 847 (1092)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~ 847 (1092)
+. ... +. ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.
T Consensus 369 -------------------~~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 369 -------------------GK-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp -------------------CC-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred -------------------CC-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 22 111 11 2667899999999999999988 58999999999998888878888999
Q ss_pred EEEEcCCCCCEEEEEeCCC----------cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 848 SLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 848 ~l~~s~~d~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
+++||| |+++|++++.++ .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+...
T Consensus 425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 999999 899998887654 99999999887 677888988999999999999999999988888887543
Q ss_pred Cceeee-----eeeec-----------------------CCCC-------cCCCCCceEEEEccCCCEEEE---------
Q 001363 918 WGIQTC-----RSLQT-----------------------PDGV-------MTLAPSETHIQFHKDQTRFLL--------- 953 (1092)
Q Consensus 918 ~~~~~~-----~~~~~-----------------------~~~~-------~~~~~~v~~l~~s~dg~~la~--------- 953 (1092)
...... ..+.. ..+. ....+.+..++|+|||+++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~ 582 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 582 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence 321000 00000 0000 011235789999999997775
Q ss_pred ---E--eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 954 ---V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 954 ---~--~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
+ ....|.+||+.+++.... . ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 583 ~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 583 YYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 234688999988875432 2 568899999999999999866 89999998887
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=330.68 Aligned_cols=268 Identities=19% Similarity=0.254 Sum_probs=241.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|+|||++|++++.||+|++||+.++..+. .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 77899999999999999999999999999999999986554 6788999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 549 (1092)
+.+++.+..+.+|...|.+++|+| ++.+|++|+.||+|++||+++... ...+..|...|.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 999999999999999999999965 568999999999999999988744 456788999999999999 6789999986
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
++.|++||+.++.....+..+. ...+..+.|+| ++.++++|+.|++|++||+.+++++..+..|. ..|.+
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~ 233 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence 6779999998887766665433 36788999986 67899999999999999999999999998764 46899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecC
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 674 (1092)
++|+|++++|++++.||+|++||..+++....+..+...+.++++.|
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 99999999999999999999999999999999999999999999874
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=343.41 Aligned_cols=303 Identities=15% Similarity=0.231 Sum_probs=247.5
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
+|.+.|++++|||||+ +||+|+ +++++||++.+++.+.......-.. .....+.......+...|.+++|+|||++|
T Consensus 62 ~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999999999 688876 6899999999998776422100000 000001111112344569999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
|+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ .|++++.|++|++||+.++++...+. +...+.++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 999999999999999886544 6889999999999999999 89999999999999999999888876 56779999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
++++. ++.+|++++.||.|++||++++.....+ ..|...|.+++|+|+|++|++++. ++.|++||+.+
T Consensus 213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN 287 (393)
T ss_dssp EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence 98753 6689999999999999999988766655 467789999999999999999986 67799999875
Q ss_pred C------------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 565 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 565 ~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
. .+...+.+|. ..|.+++|+|++.++++|+.|+.|++||..+++.+..+..|. ..|.+++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v~~~~ 362 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVAVAN 362 (393)
T ss_dssp -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS
T ss_pred CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEEEecC
Confidence 3 3455667776 889999999999999999999999999999999999888664 4689999886
Q ss_pred ------CCCEEEEEeCCCeEEEEECCC
Q 001363 633 ------NGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 633 ------~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
++++|++++.||+|++|+...
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=348.60 Aligned_cols=290 Identities=15% Similarity=0.167 Sum_probs=256.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|+|+|++|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+|+ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 77999999999999999999999999999999999886544 6789999999999999999 899999999999999
Q ss_pred CCCCc-------eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-----cCCCCceEEEEEcc
Q 001363 472 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA 539 (1092)
Q Consensus 472 ~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~s~ 539 (1092)
+.+.. ....+.+|.+.|.++.|.+.. +..|++|+.|++|++||+.++.....+ ..|...+.++++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 345678999999999997653 357999999999999999998887766 56777899999987
Q ss_pred -CCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 540 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 540 -dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
+++++++++. ++.|++||++ .+..+..+.+|. ..|.+++|+|+++++++|+.||+|++||+.+++.+..+.
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 8899999986 6679999997 557788888888 899999999999999999999999999999999988876
Q ss_pred CCCC-----CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeec----ccccCceeeeeecCCCccccccccCCce
Q 001363 618 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1092)
Q Consensus 618 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 688 (1092)
.+.. ...+.+++|+|+|+++++|+.||.|++||...++.+..+ .+|...|.+++++
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s--------------- 353 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS--------------- 353 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---------------
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---------------
Confidence 5422 234889999999999999999999999999988877665 6788999999996
Q ss_pred eecCCCCCCCccceeeccccccceeccc
Q 001363 689 SVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|||+++++++.|+++++|++.
T Consensus 354 -------~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 354 -------SDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp -------SSSSEEEEECTTSCEEEEECC
T ss_pred -------CCCCEEEEeeCCCCEEEEecC
Confidence 789999999999999999976
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=335.41 Aligned_cols=301 Identities=17% Similarity=0.204 Sum_probs=240.0
Q ss_pred cccc-cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 732 VKAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 732 ~~~~-~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
+|.. .|..++|+|+|++|++++.|+.|++|++..... .....+ ..+|...|.+++|
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~-~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVL-SEGHQRTVRKVAW 69 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEE-CSSCSSCEEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeee-ccccCCcEEEEEE
Confidence 3666 899999999999999999999999999764311 100001 1248999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEcCCc--eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc---eeeEeecc
Q 001363 811 SKNDAYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG 884 (1092)
Q Consensus 811 s~dg~~l~~~s-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~ 884 (1092)
+|++++|++++ |+.+++||..++ +.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++ +++..+.+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence 99999999998 799999998866 46788999999999999999 8999999999999999999876 45677889
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEE
Q 001363 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 963 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd 963 (1092)
|...|.+++|+|++++|++++.|++|++||+..++. .+.....+|.. .|.+++|+|+|++|++ +.|++|++||
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 999999999999999999999999999999987542 23344556654 7999999999999999 6889999999
Q ss_pred cCCc---------------eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEE--eeccccccCCCC
Q 001363 964 AEEL---------------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC--RILSTAYLRPTT 1026 (1092)
Q Consensus 964 ~~~~---------------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~--~~~~~~~~~~~~ 1026 (1092)
.... +++..+...|...|.+++|+|++..|++++.|+.|++|+...+.... .+...... ...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~ 301 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL-HQA 301 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE-TTS
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee-ccc
Confidence 7321 23344344489999999999999999999999999999987653210 01000011 112
Q ss_pred ccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001363 1027 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1027 ~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
|...|. +++|+|+++.+||+|+.||+|++|++...+.
T Consensus 302 h~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 302 HSQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SSSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred ccCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 455555 7899996557999999999999999976663
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=333.87 Aligned_cols=303 Identities=18% Similarity=0.261 Sum_probs=260.2
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+..+|+||++.|++|+|+|++..+||||+.|++|+|||+.+++..... ....+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEE
Confidence 4557899999999999999985348999999999999999887644221 12237899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEEec
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~ 483 (1092)
+|||++|++++.|+.|++|+...+.... ....+...+..+.+++++. .+++++.|+.+++||....... ....+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998875443 5567888899999999999 7999999999999998766543 44567
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
|...+..++|.+.+...++++++.|+.|++||+.+.+....+..|...|.+++|+|++++|++++. ++.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999988877789999999999999999999999999999999999999999999999986 6779999999
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-------CCCCCCceEEEccCCCE
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTL 636 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~ 636 (1092)
+++.+..+..+ ..+.++.|+|++. +++++.|+.|++||++++..+..+..+ .+...|.+++|+|+|++
T Consensus 246 ~~~~~~~~~~~----~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 246 EGKHLYTLDGG----DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTEEEEEEECS----SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred cCceeeeecCC----ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 99999888764 4799999999865 566777999999999998887766532 34557899999999999
Q ss_pred EEEEeCCCeEEEEECCCCc
Q 001363 637 LAVIANENRIKILETPESN 655 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~ 655 (1092)
|++|+.||.|+||++.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999998764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=333.27 Aligned_cols=324 Identities=13% Similarity=0.163 Sum_probs=272.6
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
|.+.|.+++|+|||+ +++++..++.+.+|+........ ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 356899999999998 57777766666666544322221 1447999999999999999999
Q ss_pred EEeCCCEEEEEEccCCCcccceEEEc--ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc--eeEEEecCCcCe
Q 001363 413 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 488 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v 488 (1092)
+++ |+.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999887655544554 7999999999999999 89999999999999999887 667788999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999965 6689999999999999999998888888889999999999999999999986 667999999999988
Q ss_pred EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001363 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
..+.. . ..+.+++|+|+++++++++.++.|++||+.+++... +.. +...+.+++|+|+++++++++.||.|++
T Consensus 219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHL--HESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcC--CccceeEEEECCCCCEEEEecCCCcEEE
Confidence 77653 3 689999999999999999999999999999887653 333 3456899999999999999999999999
Q ss_pred EECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001363 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~ 728 (1092)
|++.+++.....
T Consensus 292 ~~~~~~~~~~~~-------------------------------------------------------------------- 303 (337)
T 1gxr_A 292 WRTPYGASIFQS-------------------------------------------------------------------- 303 (337)
T ss_dssp EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred EECCCCeEEEEe--------------------------------------------------------------------
Confidence 999876544211
Q ss_pred CCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001363 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~ 763 (1092)
.+...+.+++|+|+++.+++++.||.+++|++
T Consensus 304 ---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 ---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 14556788888889888888888899998885
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=325.88 Aligned_cols=297 Identities=21% Similarity=0.275 Sum_probs=253.2
Q ss_pred eecCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEEccCCCcc--cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 391 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 388999999999999965 89999999999999999754321 23446889999999999999999 89999999999
Q ss_pred EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC------C
Q 001363 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G 541 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d------g 541 (1092)
++||+.+++.+..+.+|...|.+++|++ ++.+|++++.||+|++||++. .....+..|...+.++.++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999999999999999999999999965 668999999999999999964 566677888899999999985 4
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 001363 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
..+++++. ++.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||+|++||+.+++.+..+..+
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 237 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-- 237 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--
Confidence 47888876 6679999999999999999888 89999999999999999999999999999999999888765
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
..+.+++|+|++.++++++.+ .+++|++.....+..+..+...
T Consensus 238 -~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~----------------------------------- 280 (319)
T 3frx_A 238 -DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG----------------------------------- 280 (319)
T ss_dssp -SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred -CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence 358999999999999988765 5999998866444333211000
Q ss_pred eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecC
Q 001363 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~ 765 (1092)
....+...+.+++|+|+|++|++++.||.|++|++..
T Consensus 281 ---------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 281 ---------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ---------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ---------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 0012456788999999999999999999999999754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=355.23 Aligned_cols=353 Identities=13% Similarity=0.186 Sum_probs=274.0
Q ss_pred CCceEEeecCCCceEEEEE----------cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg----------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..|.+++|+|+|+.++|+| +.|+.|+|||+.+++..... ....|...|.+++|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~v~~~~~ 75 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-----------------ASLQVDSKFNDLDW 75 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-----------------CCCCCSSCEEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-----------------EEEecCCceEEEEE
Confidence 4799999999997689999 88999999999987632100 02358899999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCc-ccceEEEcccccceeEEEEecC-CCcEEEEEEeCCCcEEEEECCCCc------
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------ 476 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~------ 476 (1092)
+|++++|++++.|+.|++||+.+... ......+.+|...|.+++|+|+ ++ +|++++.|+.|++||+.+++
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccc
Confidence 99999999999999999999987211 1234467899999999999998 66 79999999999999999887
Q ss_pred eeE---EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEccCC-CEEEE
Q 001363 477 RTY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFS 546 (1092)
Q Consensus 477 ~~~---~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg-~~l~~ 546 (1092)
... .+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+..+ ...+.+++|+|++ .++++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred cccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 333 34679999999999764 2579999999999999999998888877776 6789999999998 57777
Q ss_pred EecCCCCceeEEEEeCCCC-eEEEEEe-eccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001363 547 CGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
++.++ .++.|++||+.++ ..+..+. +|. ..|.+++|+| +++++++++.||.|++||+.+++.+..+..+. .
T Consensus 233 ~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--~ 306 (416)
T 2pm9_A 233 ATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG--N 306 (416)
T ss_dssp EECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--S
T ss_pred EECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--C
Confidence 76532 1237999999986 5666776 666 8999999999 89999999999999999999999999988664 4
Q ss_pred CCceEEEccCC-CEEEEEeCCCeEEEEECCCCceeeeccc--ccCceeeeeecCCCcccc---------------ccccC
Q 001363 624 ENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIAN 685 (1092)
Q Consensus 624 ~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---------------~~~~~ 685 (1092)
.|.+++|+|++ .++++++.|+.|++|++.+......... .........+.+.....+ .....
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS 386 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS
T ss_pred ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc
Confidence 68999999998 8999999999999999987754332211 000000001111000000 00111
Q ss_pred CceeecCCCCCCCccceeeccccccceecccc
Q 001363 686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 686 ~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
..++| +|||+++++++.|+.|++|++.+
T Consensus 387 ~~~~~----s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 387 PAAHW----AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCEE----ETTTEEECBCTTSSCBCCBCCCC
T ss_pred cceEE----eeCCeEEEEeCCCCeEEEEEecc
Confidence 13344 78999999999999999999763
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=341.42 Aligned_cols=343 Identities=11% Similarity=0.097 Sum_probs=278.2
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEc----CCCC------ceEEecC-------
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLY----DSLG------ARVDYDA------- 527 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~----~~~~------~~~~~~~------- 527 (1092)
.+.+|+++..........|...|.+++|++ ++. +|++++.||.|++|++ .++. ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNP--LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECS--SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred ccccccchhhhhheeeeeccCceEEEEECC--CCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 456888877666656666789999999965 567 9999999999999999 7777 3444333
Q ss_pred ---CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 528 ---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 528 ---~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
+...|.+++|+|++++|++++. ++.|++|| .+++.+..+.+|. ..|.+++|+|+++++++++.|+.|++
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~~-~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVE----NGELRLWN-KTGALLNVLNFHR---APIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEET----TSCEEEEE-TTSCEEEEECCCC---SCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeC----CCeEEEEe-CCCCeeeeccCCC---ccEEEEEECCCCCEEEEEecCCeEEE
Confidence 4668999999999999999986 55699999 7788888888877 89999999999999999999999999
Q ss_pred EECCCCceEEEEeCCCCCCC-------------CceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeee
Q 001363 605 WDMNKVQLLTTIDAGGGLPE-------------NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~-------------v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 671 (1092)
||+.+++.+..+..+..... +.+++|+|++ .+++++.+|.|++|++.+++....+.
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~---------- 244 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI---------- 244 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC----------
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec----------
Confidence 99999999888876543211 7889999875 58888889999999988764433322
Q ss_pred ecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEE
Q 001363 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1092)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 751 (1092)
.|...|.+++|+|+++.+++
T Consensus 245 ------------------------------------------------------------~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 245 ------------------------------------------------------------GHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp ------------------------------------------------------------CCSSCEEEEEEETTTTEEEE
T ss_pred ------------------------------------------------------------cCCCceEEEEECCCCCEEEE
Confidence 15567888999999999999
Q ss_pred eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001363 752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV 830 (1092)
Q Consensus 752 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~ 830 (1092)
++.||.+++|++.... ...... .|...+.+++|+|++ ++++++ ++.|++||+
T Consensus 265 ~~~d~~i~i~d~~~~~----------------------~~~~~~----~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGN----------------------SQNCFY----GHSQSIVSASWVGDD-KVISCSMDGSVRLWSL 317 (425)
T ss_dssp EETTSCEEEECSSSBS----------------------CSEEEC----CCSSCEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred EcCCCEEEEEECCCCc----------------------cceEec----CCCccEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence 9999999998865431 122211 378899999999999 777776 799999999
Q ss_pred CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce--------------------eeEeeccccC--C
Q 001363 831 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--R 888 (1092)
Q Consensus 831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~ 888 (1092)
.+++.+..+..|...+.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .
T Consensus 318 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (425)
T 1r5m_A 318 KQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY 396 (425)
T ss_dssp TTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCC
T ss_pred CCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCc
Confidence 99999999999999999999999 89999999999999999999988 8899999977 9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 889 VTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
|++++|+|++++|++++.||.|++|+++.
T Consensus 397 v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 397 IFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred eEEEEccCCCceEEEEecCceEEEEeecC
Confidence 99999999999999999999999999863
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=323.99 Aligned_cols=291 Identities=20% Similarity=0.287 Sum_probs=260.4
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
.+.+|...|.+++|+|+|++||+++.|+.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 378999999999999999999999999999999999886544 6789999999999999999 89999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
|+.+++++..+.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+..+..++.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999965 6689999999999999999999988899999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.|+.|++||+.+++.+..+..+..........+
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 5679999999998887765443 46799999999999999999999999999999999998877654333334444
Q ss_pred c-cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec--cc
Q 001363 631 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE 707 (1092)
Q Consensus 631 s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~d 707 (1092)
+ +++.++++++.||.|++||+.+++.+..+.+|...+.+++++ |+++.+++++ .|
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d 302 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND 302 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence 4 678999999999999999999999999999999999999997 6777888876 68
Q ss_pred cccceeccc
Q 001363 708 NKSEVEKPL 716 (1092)
Q Consensus 708 ~~i~lw~~~ 716 (1092)
++|++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999854
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=323.72 Aligned_cols=306 Identities=15% Similarity=0.182 Sum_probs=233.2
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
+.+.+..+.+|. ..|.+++|+|+ +|++|+.|++|++||+..+ .....+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 456677888888 89999999987 8999999999999999875 3445553322456799999999999999999
Q ss_pred CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCc
Q 001363 642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 721 (1092)
Q Consensus 642 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~ 721 (1092)
.|+.|++|+........
T Consensus 78 ~D~~v~iw~~~~~~~~~--------------------------------------------------------------- 94 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT--------------------------------------------------------------- 94 (330)
T ss_dssp TTSCEEEEEC----------------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc---------------------------------------------------------------
Confidence 99999999975321000
Q ss_pred cccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCC
Q 001363 722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 801 (1092)
Q Consensus 722 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~ 801 (1092)
...+ . ... + .+|
T Consensus 95 ----------------------~~~~-~-----------------------------------------~~~--~--~~h 106 (330)
T 2hes_X 95 ----------------------FEMD-L-----------------------------------------LAI--I--EGH 106 (330)
T ss_dssp ----------------------CCCE-E-----------------------------------------EEE--E--C--
T ss_pred ----------------------ccce-e-----------------------------------------EEE--E--cCC
Confidence 0000 0 000 0 037
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC----ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 802 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
...|.+++|+|++++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence 77888888988888888887 78899998842 356778899999999999999 8999999999999999999876
Q ss_pred --eeeEeeccccCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCce---eeeeeeecCCC-CcCCCCCceEEEEccCC
Q 001363 877 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 877 --~~~~~l~~h~~~V~~l~~spd--g~~l~s~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~l~~s~dg 948 (1092)
+++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.. ....+.....+ |. ..|.+++|++++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~ 262 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG 262 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC
Confidence 678899999999999999999 77999999999999999975421 11123333333 43 379999999877
Q ss_pred CEEEEEeCCcEEEEEcCCce--eeeeeccCCCC-CEEEEEEec--CCCEEEEEECCCcEEEEEcCC
Q 001363 949 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 949 ~~la~~~d~~i~lwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
.++..+.|+.|++||..+++ .......+|.. .|.+++|+| |+++|++|+.||+|++|++..
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 54444789999999998774 34444567876 999999999 789999999999999999865
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=367.64 Aligned_cols=529 Identities=10% Similarity=0.017 Sum_probs=372.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC------CCcEE
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK 468 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~ 468 (1092)
+...+.+.+||| +.||.++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456788999995 58888876 68999999887532 4678999999999999999 5666543 34799
Q ss_pred EEECCCCceeEEEecCCcCe-------EEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEE
Q 001363 469 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v-------~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~ 535 (1092)
+||+.+++ ...+..|...+ ..++|+| ||+++++++.+ ..|..|++..+....... . ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~--~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-G--PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-C--SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecC-C--Cccee
Confidence 99998876 57788888888 8899965 56677777754 357777776654433222 2 23457
Q ss_pred EEccCCCEEEEEecCCC--------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 536 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
+|+| | .+++++...+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777643211 12234455332223444556666 88999999998 56667788899999976
Q ss_pred CC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCC
Q 001363 608 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 608 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
.. +.....+..+. .+...+|+|||++++.+. ++.|++|+.... .+..+..+....
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~------------------- 287 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLES------------------- 287 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCB-------------------
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccc-------------------
Confidence 53 33444444332 367789999999998884 789999998433 222222100000
Q ss_pred ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEe-cCCcEEEEeecCCeeEEEeecC
Q 001363 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR 765 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~~w~~~~ 765 (1092)
.. ....+...+..++|+ |||+.+++++ ++.+.+|+...
T Consensus 288 ----------------------~~------------------~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 288 ----------------------PE------------------DRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp ----------------------CC------------------SEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred ----------------------cc------------------cccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 00 000144567789999 9999888877 77788876543
Q ss_pred CCcCcCcccccccCCccccCCCCCceeeecCCCCCCCC-CeeEEEEecCCCEEEEEeC-CeEE-EEEcCCceeeEEecCC
Q 001363 766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPP 842 (1092)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~-~v~~~~~s~dg~~l~~~sd-g~i~-iwd~~~~~~~~~~~~~ 842 (1092)
. . ... +. .+.. .+..++|+ ||+.++++++ +.+. +||+.+++.. .+.+|
T Consensus 327 ~----------------------~-~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~ 377 (1045)
T 1k32_A 327 T----------------------Y-VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN 377 (1045)
T ss_dssp S----------------------B-EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred C----------------------c-eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC
Confidence 2 1 111 11 2555 78899999 9999999885 6688 8899877654 44477
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC----------cEEE
Q 001363 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFV 912 (1092)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg----------~I~i 912 (1092)
...+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++
T Consensus 378 ~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 378 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 78999999999 899999999999999999999998888878999999999999999999887654 8999
Q ss_pred EEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCcee----------------------
Q 001363 913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC---------------------- 969 (1092)
Q Consensus 913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~---------------------- 969 (1092)
||+.+++. .....+.. .+..++|+|||++|+. +.++...+|+......
T Consensus 457 ~d~~~g~~------~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 457 YDMEGRKI------FAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp EETTTTEE------EECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred EECCCCcE------EEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 99998652 11222222 4778999999999988 4445555554322111
Q ss_pred --------------------eeeeccCCCCCEEEEEEecCCCEEEE-------------EECCCcEEEEEcCCCceEEee
Q 001363 970 --------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 970 --------------------~~~~~~~h~~~v~~l~fs~dg~~l~t-------------~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
....+..|.+.+..++|+|||+++++ ...+..|.+||+.+++.....
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 607 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK 607 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence 01112346678999999999987875 123457888999988754222
Q ss_pred ccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1017 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
. . ...++++| |+.+|++++.+ .|++||+....
T Consensus 608 ~------------~--v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 N------------N--LTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E------------E--EEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred c------------C--cceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 1 1 23678999 68999998766 89999996544
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=332.73 Aligned_cols=290 Identities=17% Similarity=0.228 Sum_probs=248.4
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccc------------------cceeEEEEecCCCc
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 455 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~~~~s~d~~~ 455 (1092)
+|...|.+++|||||++||+|+ ++.+++|++.+++.+. .+..|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6789999999987554 343332 2499999999999
Q ss_pred EEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001363 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1092)
Q Consensus 456 l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 535 (1092)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999965 66899999999999999999887766665 44578999
Q ss_pred EEcc-CCCEEEEEecCCCCceeEEEEeCCCCeEEEEE-------eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 536 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTY-------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 536 ~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
+|+| +++++++++. ++.|++||..++..+..+ .+|. ..|.+++|+|+++++++|+.|+.|++||+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999 8999999986 566999999999888776 3444 89999999999999999999999999999
Q ss_pred CCCc------------eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCC
Q 001363 608 NKVQ------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 608 ~~~~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
.+.. +...+..| ...|.+++|+|++.+|++++.|+.|++||..+++.+..+.+|...|.++++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp ---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred CCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC
Confidence 7643 33444444 446899999999999999999999999999999999999999999999999864
Q ss_pred CccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001363 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
... +|+++.+++++.|+++++|++..
T Consensus 364 ~~~----------------~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 364 SSL----------------GPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CTT----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCc----------------CCCCCEEEEECCCCcEEECcccc
Confidence 322 57899999999999999999763
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=345.57 Aligned_cols=382 Identities=13% Similarity=0.151 Sum_probs=287.8
Q ss_pred eecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeee-cCCCCcEEEEEECC-CCCEEEEEeCCC
Q 001363 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYSKH 418 (1092)
Q Consensus 341 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l-~~h~~~V~~l~~sp-dg~~las~~~d~ 418 (1092)
.|+|+++ .+++++ .|+ .+++.+.. + .+|.+.|.+++|+| ++++||+|+.|+
T Consensus 34 ~f~~~~~-~~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg 86 (437)
T 3gre_A 34 EFGPIQE-IVRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSDQG 86 (437)
T ss_dssp GGCCCCC-CCCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEETTS
T ss_pred hcCCccc-cccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecCCc
Confidence 5889998 455544 377 44555543 4 78999999999999 999999999999
Q ss_pred EEEEEEccC---CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC---CCceeEEEecCCcCeEEEe
Q 001363 419 IVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 419 ~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~i~ 492 (1092)
+|+|||+.+ +........+ +|...|.+++|+|+++ +|++|+.|++|++||++ +++.+..+.+| .+..+.
T Consensus 87 ~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~ 161 (437)
T 3gre_A 87 VIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKIN 161 (437)
T ss_dssp EEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEE
T ss_pred eEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEE
Confidence 999999987 5534333333 5999999999999999 89999999999999994 77877777766 677777
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE--EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001363 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~--~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
+.+.+ +...+.++. +++++.++++++. ++.|++||+.+++.+..
T Consensus 162 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 162 LKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQI 207 (437)
T ss_dssp GGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEE
T ss_pred ccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEE
Confidence 75531 112333444 6789999999986 66799999999999999
Q ss_pred Eee--ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc----cCCCEEEEEeCCC
Q 001363 571 YQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIANEN 644 (1092)
Q Consensus 571 ~~~--~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg 644 (1092)
+.+ |. ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+ |++.++++++.||
T Consensus 208 ~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 208 IENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred EccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCC
Confidence 988 55 8999999999999999999999999999999999988863322 368899665 4688999999999
Q ss_pred eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001363 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~ 724 (1092)
.|++||+.+++.+..+.++...+..+.++|.
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 314 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPI------------------------------------------------- 314 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCB-------------------------------------------------
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceeccc-------------------------------------------------
Confidence 9999999999888877776665544444321
Q ss_pred ccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001363 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 804 (1092)
++.+ .+. .+.+..|...
T Consensus 315 ---------------------~~~l----~~~--------------------------------------~~~~~~~~~~ 331 (437)
T 3gre_A 315 ---------------------EKGL----EEL--------------------------------------NFCGIRSLNA 331 (437)
T ss_dssp ---------------------CSSG----GGC--------------------------------------CCCCCCSGGG
T ss_pred ---------------------cccc----ccc--------------------------------------eecccccCCc
Confidence 1110 000 0000127788
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCC---CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeE
Q 001363 805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1092)
|.+++|+ ++++|++++ |+.|++||+.+++....+.+|. ..+....+++ ...+++.. |+...+....
T Consensus 332 v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~ 401 (437)
T 3gre_A 332 LSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVD 401 (437)
T ss_dssp GCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC--------
T ss_pred eEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccC
Confidence 9999999 778899887 7999999999999999888764 3456666776 55454443 3344455556
Q ss_pred eeccccCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 001363 881 KLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spd--g~~l~s~s~Dg~I~iwd 914 (1092)
....|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 402 ~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 402 DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 66779999999999998 78999999999999995
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=341.78 Aligned_cols=346 Identities=13% Similarity=0.120 Sum_probs=284.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
.+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence 45578999999999999999999999999876654 23345 4455668899999 899999999999999999999
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
...+.+|...|.+++|++ ++.+|++++.||.|++||+.+.+....+..|...|.+++|+|++++|++++. ++.|
T Consensus 132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v 205 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI 205 (420)
T ss_dssp EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence 988889999999999965 6679999999999999999999999999999999999999999999999986 5669
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE
Q 001363 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1092)
++||+.+++.+..+..+..+...+.++++.|.+...+ .. .+...+.+++|+|+++++
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~--~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL---------------------HE--ISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC---------------------GG--GCCCCCCTTCSSCTTEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCccee---------------------ee--cccCcccceEEcCCCCEE
Confidence 9999999999999988766668899998887643220 01 112457889999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001363 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
++++.||.|++||+.+++....+.
T Consensus 263 ~~~~~dg~i~i~d~~~~~~~~~~~-------------------------------------------------------- 286 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKEQTIQLP-------------------------------------------------------- 286 (420)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------------
T ss_pred EEEcCCCeEEEEECCCCceeEEcc--------------------------------------------------------
Confidence 999999999999987553221100
Q ss_pred ccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC
Q 001363 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797 (1092)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 797 (1092)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 3vl1_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEEecCCC-EEEEEe-CCeEEEEEcCCcee-eEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 001363 798 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873 (1092)
Q Consensus 798 ~~~~~~~v~~~~~s~dg~-~l~~~s-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 873 (1092)
..|...|.+++|+|+++ ++++++ ||.|++||+.+++. +..+.. |...+.++.+. ++++|++++.||.|++|++
T Consensus 287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence 01566788888888888 888877 68899999887654 666665 56677888654 5789999999999999999
Q ss_pred CCc---------eeeEeeccccCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 001363 874 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 874 ~~~---------~~~~~l~~h~~~V~~l~~spdg~---~l~s~s~Dg~I~iwd~~~ 917 (1092)
... .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 873 22334567899999999999999 788888899999999875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=321.32 Aligned_cols=321 Identities=14% Similarity=0.141 Sum_probs=266.9
Q ss_pred ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001363 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1092)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~ 518 (1092)
.|.++|.+++|+|||+ .++++..++.+.+|+...........+|...|.+++|++ +++++++++ ||.|++||+.+
T Consensus 7 ~~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTS
T ss_pred ccCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCC
Confidence 3667899999999999 787777777777776665555555568999999999965 678999998 99999999987
Q ss_pred CCceE---Eec--CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCC
Q 001363 519 LGARV---DYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 519 ~~~~~---~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
..... .+. .+...+.+++|+|+++++++++. ++.|++||..+++ ....+..|. ..+.+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSA---PACYALAISPDSK 154 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSS---SCEEEEEECTTSS
T ss_pred CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCC---CceEEEEECCCCC
Confidence 65322 222 67889999999999999999876 6679999999887 555666666 8899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeee
Q 001363 592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 671 (1092)
++++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++++++++.||.|++||+.+++.....
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----------- 221 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----------- 221 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-----------
Confidence 99999999999999999999988887653 46899999999999999999999999998754222110
Q ss_pred ecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEE
Q 001363 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1092)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 751 (1092)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001363 752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV 830 (1092)
Q Consensus 752 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~ 830 (1092)
.+...+.+++|+|+++++++++ ++.|++||+
T Consensus 222 ------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 222 ------------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp ------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 0334566777888888888777 578888888
Q ss_pred CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcE
Q 001363 831 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910 (1092)
Q Consensus 831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I 910 (1092)
.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|
T Consensus 254 ~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 254 NKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp TSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 77665 45677899999999999 8999999999999999999999887554 488999999999999999999999999
Q ss_pred EEEEc
Q 001363 911 FVWDV 915 (1092)
Q Consensus 911 ~iwd~ 915 (1092)
++|++
T Consensus 331 ~iw~~ 335 (337)
T 1gxr_A 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=343.15 Aligned_cols=350 Identities=12% Similarity=0.113 Sum_probs=283.1
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
+.+++++|+|+|+ +|++|+.|+.|++||+.+++.... +..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence 3456899999999 589999999999999988765432 3344 455566889999999999
Q ss_pred eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 494 (1092)
+.|+.|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999875443 5679999999999999999 89999999999999999999999999999999999996
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
+ ++.+|++++.||.|++||+++.+....+.. +...+.++++.+++...+ .
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------~ 243 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-------------------------H 243 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC-------------------------G
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee-------------------------e
Confidence 5 678999999999999999999888777764 445777787776543221 1
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEE
Q 001363 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILE 650 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~ 650 (1092)
..+ ...+.+++|+|+++++++++.||.|++||+.+++....+... +...+.+++|+|+++ +|++++.||.|++||
T Consensus 244 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 244 EIS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp GGC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ecc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 111 267888899999999999999999999999999888777542 335689999999999 999999999999999
Q ss_pred CCCCce-eeeccc-ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccc-cc
Q 001363 651 TPESNS-VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS-LL 727 (1092)
Q Consensus 651 ~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~-~~ 727 (1092)
+.++.. +..+.. +...+.++.+ ++++++++++.|+.+++|++.......... ..
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~ 376 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFE 376 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred cCCCcCchhhhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence 998743 566665 5556665544 467889999999999999987532221110 00
Q ss_pred --cCCccccccEEEEEEecCCc---EEEEeecCCeeEEEeec
Q 001363 728 --LPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWP 764 (1092)
Q Consensus 728 --~~~~~~~~~i~~l~~s~~g~---~l~~~~~dg~i~~w~~~ 764 (1092)
.....+...|.+++|+|+++ .+++++.+|.+.+|++.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 01134778899999999999 89999999999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=358.59 Aligned_cols=299 Identities=18% Similarity=0.252 Sum_probs=253.2
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....|++|++.|++++|+|++..+|++|+.|++|+|||+.++..... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 44678999999999999998755899999999999999987543211 0112277999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE---e
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E 482 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---~ 482 (1092)
|+|++|++|+.|++|+|||+.++.... .+.+|...|.+++|+|+++ .|++|+.|++|++||.......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999986554 6789999999999999999 7999999999999997654433222 4
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+|...|.+++|++......+++++.||+|++||++.......+..|...|.+++|+|+|++|++++. ++.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6889999999988665579999999999999999999888899999999999999999999999986 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC-----------------CCCC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPEN 625 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v 625 (1092)
.+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+
T Consensus 591 ~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
T 3dm0_A 591 AEGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665 (694)
T ss_dssp TTTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred CCCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence 999988776543 5799999999988777665 56699999999998887754311 1125
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.+++|+|+|++|++|+.||.|++|++.
T Consensus 666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 666 TSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 689999999999999999999999975
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=330.67 Aligned_cols=328 Identities=16% Similarity=0.223 Sum_probs=281.1
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....|.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++|+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 168 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR 168 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence 34678999987643 3555687 689999999999999999987765 77899999999997
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
+++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|.
T Consensus 169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 6799999999999999999986554 788999999999996 44 79999999999999999999999999999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
..|.++++ ++.++++++.||.|++||+++.+....+..+...+.+++| ++.++++++. ++.|++||+.++
T Consensus 240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~ 309 (445)
T 2ovr_B 240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG 309 (445)
T ss_dssp SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence 99999988 5678999999999999999999888899999999999998 8899999986 566999999999
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-CCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
+.+..+.+|. ..+.++.++ ++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||
T Consensus 310 ~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 382 (445)
T 2ovr_B 310 NCIHTLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG 382 (445)
T ss_dssp CEEEEECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CEEEEEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence 9999998887 788887774 6799999999999999999999999887632 34568888885 68999999999
Q ss_pred eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001363 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~ 724 (1092)
.|++|++.+++.+..+...
T Consensus 383 ~v~iwd~~~~~~~~~~~~~------------------------------------------------------------- 401 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTL------------------------------------------------------------- 401 (445)
T ss_dssp EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred eEEEEECCCCceeeeeecc-------------------------------------------------------------
Confidence 9999999988665544210
Q ss_pred ccccCCccccccEEEEEEecCCcEEEEeecCCe----eEEEeecC
Q 001363 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR 765 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----i~~w~~~~ 765 (1092)
....+...|.+++|+|++..+++++.||. +.+||+..
T Consensus 402 ----~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ----ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 00126677889999999999999999987 88888764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=346.94 Aligned_cols=337 Identities=15% Similarity=0.228 Sum_probs=263.9
Q ss_pred CceEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 579 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 579 ~~v~~~~~~~~~~-~l~~~----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
..+.+++|+|+++ +++++ +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 3577899999987 88888 899999999999876332222122345699999999999999999999999
Q ss_pred EEECCCC----ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccc
Q 001363 648 ILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 723 (1092)
Q Consensus 648 iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~ 723 (1092)
+|++.+. .....+.+
T Consensus 93 vw~~~~~~~~~~~~~~~~~------------------------------------------------------------- 111 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSN------------------------------------------------------------- 111 (416)
T ss_dssp EECCSSTTSCCCEEEECCC-------------------------------------------------------------
T ss_pred EeecccccccccchhhccC-------------------------------------------------------------
Confidence 9998862 22222222
Q ss_pred cccccCCccccccEEEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCC
Q 001363 724 QSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 802 (1092)
Q Consensus 724 ~~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~ 802 (1092)
|...|.+++|+|+ +..+++++.||.|++|++......... .... ..... ..|.
T Consensus 112 ---------h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~--------~~~~~--~~~~ 165 (416)
T 2pm9_A 112 ---------HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN-------YTPL--------TPGQS--MSSV 165 (416)
T ss_dssp ---------SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT-------CCCB--------CCCCS--CCSS
T ss_pred ---------CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc-------cccc--------ccccc--cCCC
Confidence 5566777788887 777888888888888876543210000 0000 00001 1488
Q ss_pred CCeeEEEEecC-CCEEEEEe-CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEEeCCC---cEEEE
Q 001363 803 EAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIY 871 (1092)
Q Consensus 803 ~~v~~~~~s~d-g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~~dg---~v~iw 871 (1092)
..|.+++|+|+ +.++++++ |+.|++||+.+++.+..+..+ ...+.+++|+|++..++++++.|+ .|++|
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 89999999999 78888887 799999999999999998876 788999999994447999999999 99999
Q ss_pred EcCCc-eeeEeec-cccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC
Q 001363 872 NARSS-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 872 d~~~~-~~~~~l~-~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
|+.++ +.+..+. +|...|++++|+| ++++|++++.|+.|++||+.+++. +....+|.. .|.+++|+|++
T Consensus 246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-----~~~~~~~~~---~v~~~~~s~~~ 317 (416)
T 2pm9_A 246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-----LSQFPARGN---WCFKTKFAPEA 317 (416)
T ss_dssp ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-----EEEEECSSS---CCCCEEECTTC
T ss_pred eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----ceeecCCCC---ceEEEEECCCC
Confidence 99986 6778888 8999999999999 999999999999999999998653 333334443 79999999999
Q ss_pred -CEEEE-EeCCcEEEEEcCCceeeeee----------------------------------ccCCCCCEEEEEEecCCCE
Q 001363 949 -TRFLL-VHETHLAIYEAEELTCLKQW----------------------------------FPISSVPISQATFSCDCRM 992 (1092)
Q Consensus 949 -~~la~-~~d~~i~lwd~~~~~~~~~~----------------------------------~~~h~~~v~~l~fs~dg~~ 992 (1092)
.+|++ +.|+.|++||+.++...... ...|..++.+++|||||++
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 397 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL 397 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence 78888 68899999999876643321 0115678889999999999
Q ss_pred EEEEECCCcEEEEEcCCC
Q 001363 993 VFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 993 l~t~~~Dg~i~vwd~~~~ 1010 (1092)
|++++.|++|+||++.+.
T Consensus 398 la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 398 VQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ECBCTTSSCBCCBCCCCC
T ss_pred EEEeCCCCeEEEEEeccC
Confidence 999999999999999875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=318.73 Aligned_cols=289 Identities=20% Similarity=0.222 Sum_probs=240.4
Q ss_pred eeecCCCCcEEEEEE-----CC-CCCEEEEEeCCCEEEEEEccCCCcc----cceEEEcccccceeEEEEecCCCcEEEE
Q 001363 390 ALVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVI 459 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~ 459 (1092)
..+.+|...|.+++| ++ |+++||+|+.|++|++||+.+++.. .....+.+|...|.+++|+|++. +++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~ 92 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI 92 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence 348899999999999 77 9999999999999999999865421 23446889999999999999999 899
Q ss_pred EEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEE
Q 001363 460 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMA 536 (1092)
Q Consensus 460 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~ 536 (1092)
+|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+... ...... .+...+.+++
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeee
Confidence 999999999999999999999999999999999965 6689999999999999999743 333322 5677899999
Q ss_pred EccCC----------CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 537 YSANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1092)
Q Consensus 537 ~s~dg----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 606 (1092)
|+|++ .++++++. ++.|++|| .+++....+.+|. ..|.+++|+|++++|++|+.||.|++||
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred eccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99987 68888876 67799999 4567777888877 8999999999999999999999999999
Q ss_pred CC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceee--ecc-----------cccCceeeeee
Q 001363 607 MN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSV 672 (1092)
Q Consensus 607 ~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----------~~~~~v~~~~~ 672 (1092)
+. .......+... ..|.+++|+|++.+++++ .|+.+++|++.++.... .+. +|...+.+++|
T Consensus 242 ~~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 242 ILNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp SSCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred CCCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 94 44444444322 348999999999888755 57789999998765432 222 45666777777
Q ss_pred cCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001363 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
+ |+|+.+++++.|+.|++|++..
T Consensus 318 s----------------------p~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 318 N----------------------ALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp C----------------------SSSCCEEEEETTSEEEEEEEEE
T ss_pred C----------------------CCCCeEEEecCCceEEEEEEEc
Confidence 5 7899999999999999999764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=331.72 Aligned_cols=305 Identities=17% Similarity=0.230 Sum_probs=267.0
Q ss_pred cceeeecccCCCCc-eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001363 324 KTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V-~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
.....+|.+|.+.| .+++| +++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.++
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l 168 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWAL 168 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEE
Confidence 34567899999886 56666 455 699999999999999999987765 77899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec--CCCcEEEEEEeCCCcEEEEECCCCce---
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR--- 477 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~--- 477 (1092)
+|+|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|++|++||+.++..
T Consensus 169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~ 242 (464)
T 3v7d_B 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD 242 (464)
T ss_dssp EECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC--
T ss_pred EEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccc
Confidence 999988 99999999999999999986554 7889999999999995 556 899999999999999988753
Q ss_pred --------------------eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001363 478 --------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1092)
Q Consensus 478 --------------------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1092)
+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..+...|.+++|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 5567889999988843 5679999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
+|+++++++++. ++.|++||+.+++.+..+.+|. ..|.++.|+ +.++++++.||.|++||+.++.......
T Consensus 319 ~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 319 DHERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp ETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 999999999986 5669999999999999999888 899999997 5799999999999999999988776665
Q ss_pred CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeee-cccccCceeeeeec
Q 001363 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN 673 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~ 673 (1092)
.. ..+..++|+++++++++++ ||.|++||+.+++.+.. ...+...|.+++++
T Consensus 390 ~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 390 HT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp CT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred CC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 32 3467889999999999998 89999999999998875 67788889888886
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=327.68 Aligned_cols=298 Identities=15% Similarity=0.138 Sum_probs=249.3
Q ss_pred cceeeecccCCCCceEEeecCCC-ceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg-~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
......+.+|.+.|++++|+|+| + +||+|+.||.|+|||+.+++...... ..+|...|.++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~ 124 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGM 124 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEE
Confidence 45677889999999999999999 6 79999999999999999887765411 34799999999
Q ss_pred EECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001363 403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 403 ~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 33332222234558899999999999 8999999999999998 68889999
Q ss_pred ecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCC----CCceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCce
Q 001363 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGES 555 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~ 555 (1092)
.+|...|.+++|++ ++. ++++++.||.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 99999999999965 456 999999999999999987 3344444 5788999999999 9999999986 66
Q ss_pred eEEEEeCCCCeEEEEEeecccc--------------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 001363 556 FLVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
.|++||+.+++....+.+|... ...+..++|+|++++ +++.|+.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 7999999999887777765411 133445666777666 777999999999999999999987655
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
...+..++|+|++++|++++ |+.|++|++.+
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677789999999999997 89999999874
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=328.56 Aligned_cols=299 Identities=13% Similarity=0.128 Sum_probs=257.4
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC------eeEEeeeeeeecccccceeeEeeecCCCCc
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ------KLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~------~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~ 398 (1092)
.+...+.+|.+.|++++|+| + +|++|+.||+|+|||+.+++ .+.. +.+|...
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~~h~~~ 64 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-------------------HFVHKSG 64 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEE-------------------EECCTTC
T ss_pred hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceE-------------------EecCCCc
Confidence 45678899999999999999 4 68999999999999999887 3332 6689999
Q ss_pred EEEEEECCC----C---CEEEEEeCCCEEEEEEccCCCccc--ceEEEccc-----ccceeEEEEe----cCCCcEE-EE
Q 001363 399 VNRVVWSPD----G---SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAH-----VGNVNDLAFS----APCKQIS-VI 459 (1092)
Q Consensus 399 V~~l~~spd----g---~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h-----~~~v~~~~~s----~d~~~l~-l~ 459 (1092)
|.+++|+|+ | ++|++++.|+.|++||+.+++... ....+..| ...|.+++|+ |+++ . |+
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~ 142 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLV 142 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEE
Confidence 999999999 9 999999999999999999887510 03367778 5899999999 9999 7 99
Q ss_pred EEeCCCcEEEEECCC------CceeE-----EEec-------CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc
Q 001363 460 TCGDDKTIKVWDAVT------GSRTY-----SFEG-------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 521 (1092)
Q Consensus 460 s~~~d~~i~vwd~~~------~~~~~-----~~~~-------~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 521 (1092)
+++.|+.|++||+.+ ++.+. .+.+ |...|.+++|++ ++ ++++++.||.|++||+++.+.
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~ 219 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRP 219 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEE
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCce
Confidence 999999999999998 77776 7744 889999999965 66 999999999999999999888
Q ss_pred eEEecC---C---CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee-------------ccccCCceE
Q 001363 522 RVDYDA---P---GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------LQLQHNSVS 582 (1092)
Q Consensus 522 ~~~~~~---~---~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~ 582 (1092)
...+.. | ...+.+++|+|++++|++++.++ ..+.|++||+.+++.+..+.+ |. ..|.
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~ 295 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVM 295 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEE
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccC---CcEE
Confidence 888888 7 88999999999999999998620 017899999999999999988 66 8999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe------CC-------------CCCCCCceEEEccCC---------
Q 001363 583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG--------- 634 (1092)
Q Consensus 583 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~--------- 634 (1092)
+++|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++
T Consensus 296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 375 (397)
T 1sq9_A 296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL 375 (397)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence 99999999999999999999999999999999988 43 014569999999998
Q ss_pred -CEEEEEeCCCeEEEEECCCC
Q 001363 635 -TLLAVIANENRIKILETPES 654 (1092)
Q Consensus 635 -~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++|++++.||.|++|++.++
T Consensus 376 ~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 376 NESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SCEEEEEETTTEEEEEEEEC-
T ss_pred cceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=347.68 Aligned_cols=341 Identities=10% Similarity=0.058 Sum_probs=249.8
Q ss_pred eeeecccCCCCceEEeecCCC---------ceEEEE-------------------EcCCCcEEEEecCCCCeeEEeeeee
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFKV 377 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg---------~~llas-------------------g~~dg~i~iwd~~~~~~~~~~~~~~ 377 (1092)
+..++. +.+.|++|+|+|++ + +||+ |+.|++|+|||+.+++.....
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~---- 199 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK---- 199 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE----
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE----
Confidence 334444 46689999999886 4 4555 456788999999887643210
Q ss_pred eecccccceeeEeeecCCCCcEEEEEECCC------CCEEEEEeCCCEEEEEEccCCCcc--------cceEEEcccccc
Q 001363 378 WDIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVGN 443 (1092)
Q Consensus 378 ~d~~~~~~~~~~~~l~~h~~~V~~l~~spd------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~~~~h~~~ 443 (1092)
...+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.++... .....+.+|...
T Consensus 200 -----------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 200 -----------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp -----------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred -----------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 1125568899999999997 579999999999999999877532 123367899999
Q ss_pred eeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEecCCcCeEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCc
Q 001363 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGA 521 (1092)
Q Consensus 444 v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~ 521 (1092)
|++++|++++ .|++|+.||+|++||++++. ....+.+|...|.++++...+++ .+|++++.||+|++||+++.+.
T Consensus 269 v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 269 ITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 9999999864 59999999999999999874 45678999999999954335566 7999999999999999988766
Q ss_pred eEEecCCC--CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001363 522 RVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1092)
Q Consensus 522 ~~~~~~~~--~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1092)
...+..+. ..+.+++|+|+++.+++++. ++.|++||++++.++..+.+|. ..|.+++|+|+++.|++|+.|
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEETT
T ss_pred ccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEECC
Confidence 55554443 35788999999999988865 6679999999999888888887 899999999999999999999
Q ss_pred CcEEEEECCCCceEEEEeCC---CCCCCCceEEEccCCCEEEEEeCCCeEEEEECC-CCceeeecccccCceeeeeecCC
Q 001363 600 HVIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
|+|++||+..+ .+...... .....+..++|+|+++.+. ... .+.+|... ++..+..+.+|...|.+++|+|+
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~ 494 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNET 494 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCS
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCC
Confidence 99999998654 21111100 0111356889999998553 222 23344332 45677788899999999999854
Q ss_pred CccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
+ +.+..+++|+.+|.|+||++.
T Consensus 495 ~-------------------~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 495 S-------------------AGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp T-------------------TTTTEEEEECTTSEEEEEECS
T ss_pred C-------------------CccHHHHhhccCceEEEEEcc
Confidence 2 235689999999999999976
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=317.94 Aligned_cols=292 Identities=12% Similarity=0.099 Sum_probs=259.6
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....|.+|++.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVD 83 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEc
Confidence 4467899999999999999998 689999999999999999987765 67899999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----CcEEEEECCCCc----
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS---- 476 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~---- 476 (1092)
|++++|++++.|+.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence 999999999999999999999987655 344 888999999999999 78999888 999999988664
Q ss_pred -------eeEEEecCCc--CeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 477 -------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 477 -------~~~~~~~~~~--~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+.+ ......+..+...|.+++|+|++++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence 3455566666 899999965 668999999999999999998 6667788888999999999999999999
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCCce
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQL 612 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------------~i~iwd~~~~~~ 612 (1092)
++. ++.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.
T Consensus 236 ~~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 236 SSR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp EET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred ecC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 976 66799999999999888873 3 6899999999999999999888 899999999999
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
+..+..+. ..|.+++|+|++++|++++.||.|++|++..+.
T Consensus 308 ~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 308 IGRVQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred hhheeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 99988664 469999999999999999999999999998653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=310.58 Aligned_cols=293 Identities=20% Similarity=0.269 Sum_probs=256.1
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
....++|.+|.+.|++++| |+++ +|++|+.||.|+|||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 4677899999999999999 9998 689999999999999988776654 556999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
|+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ .+++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999876554555578899999999999 456 799999999999999 7888899999
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||.
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999999763 557999999999999999 3445555555 788999999999999 777765 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.+++.+..+.+|. ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++ +++++.
T Consensus 213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~ 285 (313)
T 3odt_A 213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSS 285 (313)
T ss_dssp TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEET
T ss_pred CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeC
Confidence 9999999999887 899999999998 69999999999999999999999998764 3689999999998 667999
Q ss_pred CCeEEEEECCCCceee
Q 001363 643 ENRIKILETPESNSVD 658 (1092)
Q Consensus 643 dg~i~iw~~~~~~~~~ 658 (1092)
||.|++|++.+++...
T Consensus 286 dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 286 DNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TSCEEEEESCGGGCCC
T ss_pred CCcEEEEeCCCCceee
Confidence 9999999999775543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=322.50 Aligned_cols=319 Identities=18% Similarity=0.280 Sum_probs=271.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.||+|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 6689887643 355579999999999999999999987555 678999999999998 44 799999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.+++.+..+.+|...|.+++++ +..+++++.||.|++||+.+.+....+..+...+.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 99999999999999999999983 368999999999999999999998899999999999998 7889999886
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.|++||..+++.+..+.+|. ..|.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~- 327 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL- 327 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence 5669999999999999998887 88999999 788999999999999999999999988876533 4555554
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001363 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
+++++++++.||.|++||+.+++.+..+..+
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 358 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------ 358 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence 5779999999999999998765433222100
Q ss_pred eeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCce
Q 001363 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791 (1092)
Q Consensus 712 lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 791 (1092)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001363 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
..|...|.+++|+ ++++++++ ||.|++||+.+++.+..+ ..|...|.+++|+| ++.++|+|+.|
T Consensus 359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d 428 (445)
T 2ovr_B 359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN 428 (445)
T ss_dssp -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence 0155667777774 57788887 789999999999888887 46788999999999 89999999999
Q ss_pred Cc----EEEEEcCC
Q 001363 866 ST----ILIYNARS 875 (1092)
Q Consensus 866 g~----v~iwd~~~ 875 (1092)
|+ |.+||+..
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 98 99999875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=321.34 Aligned_cols=300 Identities=12% Similarity=0.209 Sum_probs=249.7
Q ss_pred CcceeeecccCCCCceEEeecCCCceEEEEEcC---CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
|......+.+|.+.|++++|+|++++++++|+. |+.|+|||+.+++..... ..+|...|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v 68 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI 68 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence 445567778999999999999999878889887 999999999998865431 22589999
Q ss_pred EEEEECCC---CCEEEEEeCCCEEEEEEccCCC-cccceEEEcccccceeEEE------EecCCCcEEEEEEeCCCcEEE
Q 001363 400 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 400 ~~l~~spd---g~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~------~s~d~~~l~l~s~~~d~~i~v 469 (1092)
.+++|+|+ |++|++|+.|+.|++||+.+++ .+. .+.+|...|.+++ |+|+++ .|++++.|+.|++
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~v 143 (357)
T 3i2n_A 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKV 143 (357)
T ss_dssp EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEE
T ss_pred EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEE
Confidence 99999998 7999999999999999999886 443 6789999999995 568898 8999999999999
Q ss_pred EECCCCc-eeEEEecCCc----CeEEEeec--ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc---
Q 001363 470 WDAVTGS-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--- 539 (1092)
Q Consensus 470 wd~~~~~-~~~~~~~~~~----~v~~i~~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--- 539 (1092)
||+.+++ .+..+..|.+ .+.+++|. .++++.++++++.||.|++||+++...... ..+...+.+++|+|
T Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSS
T ss_pred EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCC
Confidence 9999987 7788876665 78888742 245778999999999999999998776443 55677999999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-----eccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---
Q 001363 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV--- 610 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~--- 610 (1092)
++.++++++. ++.|++||+.+++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+..+
T Consensus 223 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 223 SMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp SCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 9999999976 6679999998887665554 555 8999999999998 7999999999999998754
Q ss_pred ----------------ceEEEEeCCCCCCCCceEEEccCCCEEE-EEeCCCeEEEEECCCCc
Q 001363 611 ----------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 655 (1092)
Q Consensus 611 ----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~ 655 (1092)
+.+..+..+ ...|.+++|+|++++|+ +++.||.|++|++.+..
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 345555554 45699999999999998 79999999999998653
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=340.20 Aligned_cols=350 Identities=10% Similarity=0.043 Sum_probs=242.2
Q ss_pred CCCcEEEEEECCCC---------CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001363 395 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 395 h~~~V~~l~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
+.+.|.+|+|+|++ ++||+|+.++. + -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence 57899999999987 89999986642 0 01378998 799999999
Q ss_pred cEEEEECCCCcee----EEEecCCcCeEEEeeccc----CCccEEEEEecCCeEEEEEcCCCCc-----------eEEec
Q 001363 466 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 526 (1092)
Q Consensus 466 ~i~vwd~~~~~~~----~~~~~~~~~v~~i~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~ 526 (1092)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887653 456778899999999886 3467999999999999999976542 23567
Q ss_pred CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEE--EEcCCC-CEEEEEeCCCcE
Q 001363 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 602 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~s~dg~i 602 (1092)
.|...|.+++|++++ .|++++. ++.|++||+.++. ....+.+|. ..|.++ +|+|++ .+|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999865 7888876 7789999999774 445677777 899999 578887 899999999999
Q ss_pred EEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccc
Q 001363 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1092)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (1092)
++||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++..+..+.+
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-------------------- 395 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-------------------- 395 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence 999999887766665443223478999999999999999999999999987655444433
Q ss_pred ccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEe
Q 001363 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 762 (1092)
Q Consensus 683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~ 762 (1092)
|.+.|.+++|+|+|+.|++++.||.+++|+
T Consensus 396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 555666777777777777777777777776
Q ss_pred ecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcC-CceeeEEecC
Q 001363 763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP 841 (1092)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~ 841 (1092)
..... +....+. ....+...+.+++|+|+++.+.. .+.+.+|+.. ++..+..+.+
T Consensus 426 ~~~~~---------------~~~~~~~-------~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 426 AARRL---------------LHGIKNS-------SATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp SCSST---------------TTCC-------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------
T ss_pred chHhh---------------ccccccC-------ccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecC
Confidence 43210 0000000 00002234678899999985532 2233344443 5677888999
Q ss_pred CCCCeEEEEEcCCCC---CEEEEEeCCCcEEEEEcCC
Q 001363 842 PSPTATSLAFNPHDN---NVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 842 ~~~~i~~l~~s~~d~---~~lasg~~dg~v~iwd~~~ 875 (1092)
|...|.+++|+| ++ .++|+|+.||.|+||++..
T Consensus 482 h~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 482 HGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 999999999999 64 5999999999999999874
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=322.06 Aligned_cols=346 Identities=15% Similarity=0.198 Sum_probs=268.2
Q ss_pred EEEEEeeccccCCc-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001363 567 IKRTYQGLQLQHNS-VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1092)
....+.+|. .. +.++.+ +++++++|+.||+|++||+.+++.+..+..| ...|.+++|+|++ ++++++.||+
T Consensus 113 ~~~~l~~h~---~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 113 QRTTLRGHM---TSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGG-ILVSGSTDRT 184 (464)
T ss_dssp EEEEEECCS---SSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECSTT-EEEEEETTSC
T ss_pred ceEEEcCCC---CCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC--CcCEEEEEEcCCC-EEEEEeCCCC
Confidence 455777777 55 466555 5679999999999999999999999998865 4579999999988 9999999999
Q ss_pred EEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccc
Q 001363 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~ 725 (1092)
|++||+.+++.+..+.+|...|.++++.+ .++++.+++++.|+.+++|++..........
T Consensus 185 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--------------------~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 244 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVE--------------------YKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEEE--------------------SSSCEEEEEEETTSCEEEEECCCCCCC----
T ss_pred EEEEECCCCcEEEEECCCCCccEEEEEec--------------------CCCCCEEEEEcCCCcEEEeeCCCCccccccc
Confidence 99999999988888888888887777763 2456677777777777777765322111000
Q ss_pred cccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001363 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1092)
Q Consensus 726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v 805 (1092)
. ......+.+.+++. . .....+. +|...+
T Consensus 245 ~-------~~~~~~~~~~~~~~-----------------------------------------~-~~~~~~~--~~~~~v 273 (464)
T 3v7d_B 245 E-------EHDYPLVFHTPEEN-----------------------------------------P-YFVGVLR--GHMASV 273 (464)
T ss_dssp ---------CCSSEEESCGGGC-----------------------------------------T-TEEEEEC--CCSSCE
T ss_pred c-------cCCcceEeeccCCC-----------------------------------------e-EEEEEcc--CccceE
Confidence 0 00000001111100 0 0011111 366777
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001363 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
.++ +++++++++++ |+.|++||+.+++.+..+.+|...|.+++|+| +++++++|+.||.|++||+.+++++..+.+
T Consensus 274 ~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 350 (464)
T 3v7d_B 274 RTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQG 350 (464)
T ss_dssp EEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence 665 68899999998 79999999999999999999999999999999 899999999999999999999999999999
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEc
Q 001363 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~ 964 (1092)
|...|.+++|+ +++|++++.||.|++||+.++.... ..... ..+..++|++++++++++.|+.|++||+
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~l~~~~dg~i~iwd~ 419 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF----SYHHT-----NLSAITTFYVSDNILVSGSENQFNIYNL 419 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE----EEECT-----TCCCEEEEEECSSEEEEEETTEEEEEET
T ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee----eecCC-----CCccEEEEEeCCCEEEEecCCeEEEEEC
Confidence 99999999997 5799999999999999999865322 11111 2477899999999999988999999999
Q ss_pred CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001363 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
.+++.+.....+|...|.+++|+ ++.++++++.||.+.+|-
T Consensus 420 ~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 420 RSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 99999988778899999999997 445555666777665554
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=307.78 Aligned_cols=299 Identities=21% Similarity=0.304 Sum_probs=250.6
Q ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCcc--cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001363 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
|.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~ 111 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLR 111 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccce
Confidence 8899999999999997 689999999999999999876543 23446789999999999999999 899999999999
Q ss_pred EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCC--EEE
Q 001363 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGR--RLF 545 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~--~l~ 545 (1092)
+|+...+........+...+..+.+.+ ++.+|++++.|+.+++||........ ....+...+..++|++++. .++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999999999988888888888888754 56799999999999999987655433 4556778899999998764 566
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
+++. ++.|++||..+++.+..+.+|. ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+
T Consensus 190 s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v 259 (340)
T 4aow_A 190 SCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DII 259 (340)
T ss_dssp EEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS---SCE
T ss_pred EEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC---ceE
Confidence 6665 6679999999999999999888 89999999999999999999999999999999999888765 358
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
.+++|+|++.++ +++.|+.|++||+.++..+..+.....
T Consensus 260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------------------------------- 298 (340)
T 4aow_A 260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVI---------------------------------------- 298 (340)
T ss_dssp EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------------------------------------
T ss_pred EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccce----------------------------------------
Confidence 999999987655 556789999999987765554432110
Q ss_pred cccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001363 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1092)
Q Consensus 706 ~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~ 766 (1092)
......|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 299 ---------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 299 ---------------------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp --------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ---------------------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 0011237788999999999999999999999999998754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-34 Score=328.11 Aligned_cols=275 Identities=12% Similarity=0.179 Sum_probs=212.8
Q ss_pred CCcceeeec-ccCCCCceEEeecC-CCceEEEEEcCCCcEEEEecCC---CCeeEEeeeeeeecccccceeeEeeecCCC
Q 001363 322 FPKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1092)
Q Consensus 322 ~p~~~~~~l-~~h~~~V~~v~~sp-dg~~llasg~~dg~i~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~ 396 (1092)
.....+..+ .+|.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +..... ....+|.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~ 111 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCS 111 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECS
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCC
Confidence 345677778 89999999999999 998 799999999999999977 432210 0011499
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEcc---CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~---~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
..|.+++|+|++++|++|+.|+.|++||+. +++... .+.+| .+..+.|+|++
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~-------------------- 166 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG-------------------- 166 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS--------------------
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc--------------------
Confidence 999999999999999999999999999995 554333 34444 67777777743
Q ss_pred CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCceEEEEEccCCCEEEEEecCC
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+...+.++.+...+++.+|++++.||.|++||+++.+....+.. |...|.+++|+|++++|++++.
T Consensus 167 ----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-- 234 (437)
T 3gre_A 167 ----------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-- 234 (437)
T ss_dssp ----------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET--
T ss_pred ----------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC--
Confidence 22334444444466788999999999999999999998888877 6789999999999999999987
Q ss_pred CCceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcC----CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC-----
Q 001363 552 EGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----- 621 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----- 621 (1092)
++.|++||+++++.+..+. .+. ..|.+++|+| ++.++++++.||.|++||+.+++.+..+..+..
T Consensus 235 --dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 309 (437)
T 3gre_A 235 --RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME 309 (437)
T ss_dssp --TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred --CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence 5679999999999988886 444 6899996654 577999999999999999999999988875532
Q ss_pred -------------------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee
Q 001363 622 -------------------LPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 622 -------------------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
...|.+++|+ ++++|++++.|+.|++||+.+++..
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 310 HFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp GGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred eecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 2235555666 4556666666666666666554333
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=321.06 Aligned_cols=295 Identities=16% Similarity=0.218 Sum_probs=247.6
Q ss_pred eecccCCCCceEEeecCC---CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 328 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spd---g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+.+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAW 77 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEe
Confidence 455699999999999984 44355666666799999999887664311 1113347889999999
Q ss_pred CCC----CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 405 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 405 spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
+|+ |++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+.
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence 999 6799999999999999999987554 6779999999999999 788 89999999999999999999999
Q ss_pred EE---ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe----------------------------cCC
Q 001363 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----------------------------DAP 528 (1092)
Q Consensus 480 ~~---~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------~~~ 528 (1092)
.+ .+|...|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+
T Consensus 153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 88 68999999999965 6689999999999999999876543322 237
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE--------------EEEEeeccccCCceEEEEEcCC--CCE
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ 592 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~--~~~ 592 (1092)
...|.+++|+ ++++++++. ++.|++||+.++.. +..+.+|. ..|.+++|+|+ +++
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM 301 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence 7889999998 778888875 67799999987743 66777766 78999999999 999
Q ss_pred EEEEeCCCcEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 593 ILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
+++++.||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999875 44466666545679999999999999999999999999975
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=312.99 Aligned_cols=203 Identities=12% Similarity=0.119 Sum_probs=172.1
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001363 801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
+...+.+++|||||+++++++ |++|+|||+.+++.+..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556688999999999988765 6899999999999998886 778899999999 99999999855 56777777776
Q ss_pred eeE--eeccccCCeEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEE
Q 001363 878 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 878 ~~~--~l~~h~~~V~~l~~spdg~~l~s~s~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 951 (1092)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++........ ......++.. .|.+++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-RSKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-EEEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-eeeeecCCCC---CeEeEEECCCCCce
Confidence 543 4456999999999999999999999887 688899887553322 2223334443 69999999999999
Q ss_pred EE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001363 952 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 952 a~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
|+ +.|++|+|||+.+++++..+..+|...|++++|||||++|||||.|++|+||+++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 578999999999999999888899999999999999999999999999999999754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=331.46 Aligned_cols=303 Identities=17% Similarity=0.195 Sum_probs=238.8
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
......+|...|+|++|+|.+..+||+|+.||+|+|||+.+++...... +.+|.+.|++|+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f~ 173 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKFN 173 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEEC
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEEe
Confidence 3456678999999999999654489999999999999999886553311 56899999999999
Q ss_pred C-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 406 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 406 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
| ++++|++|+.|++|++||++++. +........+...+.+++|+|+++ +|++|+.||.|++||++ ++.+..+.+|
T Consensus 174 p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h 249 (435)
T 4e54_B 174 PLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMH 249 (435)
T ss_dssp SSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCC
T ss_pred CCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecc
Confidence 8 78999999999999999998753 222212223445688999999999 89999999999999975 5677888999
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
...|.+++|++.. ..++++++.|+.|++||++...... ....|...|.+++|+|+|++|++++. ++.|++||
T Consensus 250 ~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd 324 (435)
T 4e54_B 250 KKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYS 324 (435)
T ss_dssp SSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEE
T ss_pred cceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEE
Confidence 9999999997653 3588999999999999998766543 33557789999999999999999986 66799999
Q ss_pred CCCCeEEEEEeeccccC---CceEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 562 ESEGAIKRTYQGLQLQH---NSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
..++.....+..|.... ..+..+.|+|++..+++++ .++.|++||..+++.+..+..+. ...|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~ 403 (435)
T 4e54_B 325 ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGIS 403 (435)
T ss_dssp SSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCC
T ss_pred CCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEE
Confidence 99998887776654111 1233456777777776654 34679999999999988875433 34577
Q ss_pred eE-EEccCCCEEEEEeCCCeEEEEECCCCce
Q 001363 627 RI-CFNKNGTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 627 ~v-~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus 404 s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 404 SLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 76 6999999999876 78999999988754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=321.54 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=242.8
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeC-----------CCCC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGL 622 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~ 622 (1092)
..+++|+...++....+.+|. ..|.+++|+| +++++++++.||.|++||+.++.....+.. ..+.
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 346778888788888888877 9999999999 999999999999999999998765444321 1244
Q ss_pred CCCceEEEcc-CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 623 PENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 623 ~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
..|.+++|+| ++.++++++.||.|++|++.+++....+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------------------- 139 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------------------------------------- 139 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------------------------------------
Confidence 5789999999 77899999999999999987653322111
Q ss_pred eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001363 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 781 (1092)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEec---CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC
Q 001363 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857 (1092)
Q Consensus 782 ~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~---dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 857 (1092)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+..|...|++++|+| ++.
T Consensus 140 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 199 (408)
T 4a11_B 140 -------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYD 199 (408)
T ss_dssp -------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCT
T ss_pred -------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCC
Confidence 222334444544 445777776 68999999999999999999999999999999 666
Q ss_pred -EEEEEeCCCcEEEEEcCCce-eeEee---------------ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 001363 858 -VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 920 (1092)
Q Consensus 858 -~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~ 920 (1092)
++++|+.||.|++||+.++. .+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 69999999999999998765 33433 57999999999999999999999999999999998663
Q ss_pred eeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCC
Q 001363 921 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
.............. ...........+.+++++.++.|++||+.+++.+.. +.+|...|++++|+|||++|++++.||
T Consensus 280 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 280 TLVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp CCCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ceeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 32111111111111 123334445556666668999999999999999887 568999999999999999999999999
Q ss_pred cEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1001 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1001 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.|++||+.+++.+....... ....+.|.....+.+.+.++.+++|+.+
T Consensus 357 ~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 357 NILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CEEEEEECC----------------------------------------------------
T ss_pred eEEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence 99999999998775443111 1122333345677788899999999875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-33 Score=314.30 Aligned_cols=291 Identities=12% Similarity=0.073 Sum_probs=246.5
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC--eeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+..|.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence 456889999999999998 68999999999999999886 3332 6689999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce---eEEE-ec
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSF-EG 483 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~-~~ 483 (1092)
+++|++++.|+.|++||+.+++... ...+..|...|.+++|+|+++ +|++++.|+.|++||+.+++. ...+ .+
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 9999999999999999998875333 224567999999999999999 899999999999999998873 3333 67
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcC------------------CCCceEEecCCCCceEEEEEccCCCEEE
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
|...|.+++|++ ++.+|++++.||.|++||+. .......+..+...+.+++|+|++++|+
T Consensus 141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 899999999966 66899999999999999954 4566677778888999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceE----------
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL---------- 613 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~---------- 613 (1092)
+++. ++.|++||..+++.+..+..+. ..+.+++|+|++.+++++ .|+.|++|++.+ +...
T Consensus 219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9986 6679999999999999999877 899999999999877777 999999999987 4311
Q ss_pred ----------------------------EEEeCCCCCCCCceEEEc-cCC---CEEEEEeCCCeEEEEECCCC
Q 001363 614 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 654 (1092)
Q Consensus 614 ----------------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iw~~~~~ 654 (1092)
..+. .++...|.+++|. ++| ++|++++.||.|++|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 2445679999866 566 99999999999999998754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=324.64 Aligned_cols=302 Identities=12% Similarity=0.120 Sum_probs=231.8
Q ss_pred EEEeeccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEEeCCCeE
Q 001363 569 RTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI 646 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i 646 (1092)
....+|. ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+|
T Consensus 113 ~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 113 QKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp CEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred ccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3445555 78999999994 5789999999999999999887766666666667899999998 78999999999999
Q ss_pred EEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccc
Q 001363 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1092)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~ 726 (1092)
++||+.++.... +
T Consensus 190 ~iwd~~~~~~~~-~------------------------------------------------------------------ 202 (435)
T 4e54_B 190 RLQDFKGNILRV-F------------------------------------------------------------------ 202 (435)
T ss_dssp EEEETTSCEEEE-E------------------------------------------------------------------
T ss_pred EEeeccCCceeE-E------------------------------------------------------------------
Confidence 999976431100 0
Q ss_pred ccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001363 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~ 806 (1092)
... + .+...+.
T Consensus 203 ---------------~~~----------~--------------------------------------------~~~~~~~ 213 (435)
T 4e54_B 203 ---------------ASS----------D--------------------------------------------TINIWFC 213 (435)
T ss_dssp ---------------ECC----------S--------------------------------------------SCSCCCC
T ss_pred ---------------ecc----------C--------------------------------------------CCCccEE
Confidence 000 0 1334567
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe---e
Q 001363 807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK---L 882 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~---l 882 (1092)
+++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.|+|||+.+++.... .
T Consensus 214 ~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~ 292 (435)
T 4e54_B 214 SLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292 (435)
T ss_dssp CEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC
T ss_pred EEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe
Confidence 889999999999998 7999999986 4667788899999999999995556899999999999999988765433 3
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--------
Q 001363 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-------- 954 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-------- 954 (1092)
.+|...|++++|+|||++|++++.||.|+|||+.+++.............. ...+..+.|+|++..++++
T Consensus 293 ~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~ 370 (435)
T 4e54_B 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ--HLTPIKAAWHPRYNLIVVGRYPDPNFK 370 (435)
T ss_dssp CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS--SSCCCBCEECSSSSCEEEECCCCTTSC
T ss_pred eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc--cceeEEEEEcCCCCEEEEEEcCCCCeE
Confidence 579999999999999999999999999999999987644322111111000 0123345666666665553
Q ss_pred -----eCCcEEEEEcCCceeeeeeccCCCCCEEEE-EEecCCCEEEEEECCCcEEEEEcCCCceE
Q 001363 955 -----HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus 955 -----~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~ 1013 (1092)
.++.|++||..+++.+..+..+|...|.++ +|+|||++|++|+ |++|+||++++|+..
T Consensus 371 ~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 371 SCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999998888899999987 6999999999875 889999999998754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=314.65 Aligned_cols=307 Identities=16% Similarity=0.168 Sum_probs=244.5
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCE
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL 636 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 636 (1092)
+|+.........+.+|. ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus 57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 44556667777888877 899999999999 999999999999999999999888887655667899999999 7899
Q ss_pred EEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|++++.|+.|++||+.+. ....+..
T Consensus 134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------ 158 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------ 158 (383)
T ss_dssp EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence 999999999999998732 1100000
Q ss_pred cccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecC
Q 001363 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 796 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 796 (1092)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-EEEEEeCCCcEEEEEcC
Q 001363 797 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNAR 874 (1092)
Q Consensus 797 ~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~dg~v~iwd~~ 874 (1092)
...+...|.+++|+|+++++++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+.
T Consensus 159 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 159 -TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp -CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGG
T ss_pred -cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCC
Confidence 001456788899999999999888 689999998 5778888999999999999999 777 99999999999999999
Q ss_pred C----ceeeEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeec--CCCCcC-------CCCCce
Q 001363 875 S----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSET 940 (1092)
Q Consensus 875 ~----~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v~ 940 (1092)
+ +.++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++......... ...+.. ....+.
T Consensus 236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence 8 5666666 6999999999999 99999999999999999998866433211111 001111 012344
Q ss_pred EEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001363 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 941 ~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
.++|+|||++ ..+.|+.|++||+.+++++..+... |...+..++|+|||++|++++ ||.|++||+++
T Consensus 315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 315 VAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 4666666666 3357899999999999998875532 577888889999999999997 99999999875
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=306.97 Aligned_cols=289 Identities=12% Similarity=0.146 Sum_probs=259.6
Q ss_pred eeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
..+.+|...|++++|+|+|++|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3488999999999999999999999999999999999986554 7889999999999999999 8999999999999
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC-----CeEEEEEcCCCCc-----------eEEecCCCC--c
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--G 531 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~-----------~~~~~~~~~--~ 531 (1092)
||+.+++.+..+. +...|.+++|++ ++.++++++.+ |.|++||+..... ...+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 9999999999988 889999999965 67899999999 9999999976642 223344444 8
Q ss_pred eEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001363 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
+.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|. ..|.+++|+|+++++++++.|+.|++||+.++
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 999999999999999876 66799999998 78888888877 89999999999999999999999999999999
Q ss_pred ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC--------------eEEEEECCCCceeeecccccCceeeeeecCCC
Q 001363 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1092)
+.+..+... ..+..++|+|+++++++++.++ .+++|+..+++.+..+.+|...|.+++++
T Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s--- 324 (369)
T 3zwl_B 251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS--- 324 (369)
T ss_dssp CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence 999888743 4589999999999999999988 89999999999999999999999999996
Q ss_pred ccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001363 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~ 718 (1092)
|+++++++++.|+.+++|++...
T Consensus 325 -------------------~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 325 -------------------PQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp -------------------TTSSEEEEEETTSEEEEEEECHH
T ss_pred -------------------CCCCEEEEEcCCCeEEEEECccc
Confidence 78899999999999999998743
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=312.35 Aligned_cols=299 Identities=11% Similarity=0.120 Sum_probs=231.5
Q ss_pred CCceEEeecCCCceEEEEEcCC-------CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d-------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
-+|++++|+|||+ +||+|+.| +.|+||++..+.......+ .......+.+|...|.+++++
T Consensus 15 ~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~-- 82 (365)
T 4h5i_A 15 YPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS-- 82 (365)
T ss_dssp SCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--
T ss_pred CCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--
Confidence 3899999999998 78888653 3599999987654321111 111223377899999888765
Q ss_pred CCEEEEE-----------eCCCEEEEEEccCCCcccce-EE-----EcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 408 GSLLGVA-----------YSKHIVQLYAYHGGSDARQQ-LE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 408 g~~las~-----------~~d~~i~iwd~~~~~~~~~~-~~-----~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
++.+++| +.|+.+++|++.++...... .. ...+...+.+++|||||+.+.+++++.|++|+||
T Consensus 83 ~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iw 162 (365)
T 4h5i_A 83 KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRII 162 (365)
T ss_dssp TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEE
T ss_pred CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEe
Confidence 5566665 35678999999876432211 11 1234456899999999996556677789999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEccCCCEEEEEe
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
|+++++++..+. |...|.+++|+| ||.++++++.+ .+++|+..++..... ...+...+.+++|+|+++++++++
T Consensus 163 d~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 163 DPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp ETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE
T ss_pred ECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe
Confidence 999999999886 778899999955 77899998855 556666666665443 345667899999999999999998
Q ss_pred cCCCCceeEEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-eCCCCCC
Q 001363 549 TSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLP 623 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~ 623 (1092)
.++.....++.|+...+.. ...+.+|. ..|.+++|+|++++|++|+.|++|+|||+.+++++..+ ..| ..
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred cCCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 8766666889999877654 23455555 88999999999999999999999999999999998876 444 45
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.|++++|+|||++||+++.|++|+||+++..
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 7999999999999999999999999999754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=312.34 Aligned_cols=299 Identities=16% Similarity=0.231 Sum_probs=247.5
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
....+|.+.+.+.++++++.. +++++.|+.|+|||+.+++..... ...|...|.+++|+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~ 145 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHD 145 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTT
T ss_pred eeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCC
Confidence 344588777665555444453 566778999999999999876542 2238899999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC-CCceeEEEecCCc
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGA 486 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~ 486 (1092)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ .+++++.|+.|++||+. .+..+..+.+|..
T Consensus 146 ~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 146 GSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred CCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 9999999999999999999986555 678999999999994 45 79999999999999999 5677888999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.|.+++|++ ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||..+++
T Consensus 219 ~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 219 EVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGA 295 (401)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCC
T ss_pred CeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCC
Confidence 999999966 6789999999999999999999888889899999999999998866555432 1237789999999999
Q ss_pred EEEEEeeccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
.+..+.. . ..+.+++|+|+++.+++++ .||.|++||+.++.........++...|.+++|+|++++|++++.||
T Consensus 296 ~~~~~~~-~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 296 RVNTVDA-G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp EEEEEEC-S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred EEEEEeC-C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 9888864 3 5899999999999999954 89999999999977766654444456799999999999999999999
Q ss_pred eEEEEECCCCceeee
Q 001363 645 RIKILETPESNSVDA 659 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~ 659 (1092)
.|++|++.+++.+..
T Consensus 372 ~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 372 NLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEEECCC------
T ss_pred cEEEEECCCCccccc
Confidence 999999998866544
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=298.65 Aligned_cols=252 Identities=13% Similarity=0.167 Sum_probs=211.8
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC--CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
+..+.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+.. +.+|.++|.+++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~ 61 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW 61 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEE
T ss_pred ceeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEe
Confidence 356889999999999999998 6999999999999999754 33332 7799999999999
Q ss_pred CCC--CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCCc--ee
Q 001363 405 SPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RT 478 (1092)
Q Consensus 405 spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~~ 478 (1092)
+|+ |++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++. ..
T Consensus 62 s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 62 AHPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp CCGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred cCCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceee
Confidence 874 899999999999999999987422 22357789999999999998 77 89999999999999998764 24
Q ss_pred EEEecCCcCeEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEccCC--
Q 001363 479 YSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG-- 541 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~dg-- 541 (1092)
..+.+|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 6778999999999998752 35799999999999999998766 345678899999999999995
Q ss_pred -CEEEEEecCCCCceeEEEEeCCCCe---EEEEE--eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001363 542 -RRLFSCGTSKEGESFLVEWNESEGA---IKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 542 -~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++|++++. ++.|++||..++. ....+ ..+ ...|.+++|+|++++|++++.|+.|++|+..
T Consensus 219 ~~~las~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 219 RSYMASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKF---PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCC---SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEEEC----CCcEEEEEeCCCCCccceeeeecccC---CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 78999886 6679999987643 11222 233 3789999999999999999999999999976
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=323.51 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=226.6
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC--CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
++.|.+.|++++|+|+|+ +||+|+.|+.|+|||+.++ +.+.. +.+|...|.+++|+|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK 66 (377)
T ss_dssp EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence 345667999999999998 7899999999999999987 33332 6789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc---eeEEEec-
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG- 483 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~~~~- 483 (1092)
+++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+++++ ....+.+
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 99999999999999999999874444556788999999999999999 79999999999999999887 4778888
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC------------------CCceEEecCCCCceEEEEEccCCCEEE
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS------------------LGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
|...|.+++|++ ++.+|++++.||.|++||+.. ......+ .|...|.+++|+|++++|+
T Consensus 145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 999999999965 668999999999999999853 2233344 7788999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------
Q 001363 546 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------- 611 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------- 611 (1092)
+++. ++.|++||+.+++. +..+.+|. ..|.+++|+|+++++++++.++.+ +|+.....
T Consensus 222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 9986 66799999999987 77788877 899999999999998888776665 66654211
Q ss_pred -----------------------------eEEEEeC-----------CCCCCCCceEEEccC-CC---EEEEEeCCCeEE
Q 001363 612 -----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK 647 (1092)
Q Consensus 612 -----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~ 647 (1092)
....... ..+...|.++++.+. +. .+++++.||.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 0000000 014456888886653 33 699999999999
Q ss_pred EEEC
Q 001363 648 ILET 651 (1092)
Q Consensus 648 iw~~ 651 (1092)
+||+
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=309.00 Aligned_cols=289 Identities=16% Similarity=0.256 Sum_probs=244.0
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
..+.|+||+++ +||+|. |++|+|||+.+|+...... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999875 678875 8999999999998776422 557889999999999999999999
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCcCeEEEeec
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~i~~~ 494 (1092)
.|++|+|||+.+++.+. .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987655 788999999988875 45 7999999999999998864 5567889999999999985
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEE-EEEecCCCCceeEEEEeCCCCeEEE
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l-~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
+ ++.++++++.||.+++|+....+. ......+...|.+++|+|++..+ ++++. ..++.|++||+.+++...
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 5 668999999999999999987653 34667788899999999977654 44433 337889999999999998
Q ss_pred EEeeccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
.+..+. .+.++.|+|+++.+++++ .|+.|++||+.+++++..+..|. ..|.+++|+|+|++|++|+.|++|+
T Consensus 316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEE
T ss_pred eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEE
Confidence 887654 789999999999998865 78999999999999999998664 5799999999999999999999999
Q ss_pred EEECCCCceeeecc
Q 001363 648 ILETPESNSVDAAG 661 (1092)
Q Consensus 648 iw~~~~~~~~~~~~ 661 (1092)
+|++.+..+.....
T Consensus 390 iWdv~~~~~~~~~~ 403 (420)
T 4gga_A 390 LWRCFELDPARRRE 403 (420)
T ss_dssp EECCSCSSCC----
T ss_pred EEECCCCCccchhh
Confidence 99998765544443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=311.55 Aligned_cols=317 Identities=11% Similarity=0.022 Sum_probs=248.0
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
+.-+..|.+|+|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 12 ~~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg-- 64 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE-- 64 (588)
T ss_dssp CCCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC--
T ss_pred hHhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC--
Confidence 34467999999999998 799999999999 7555532 45799999999999999
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc----
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA---- 486 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---- 486 (1092)
.++.+.+|+.+....+. + .|...|.+++|||||+ .|++++.||.|++||.++ ++..+. |..
T Consensus 65 -----~~~~~~~~~~~~~~~~~----~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 65 -----FENKLDFELAQQNGLLN----S-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp -----CCCTTTTSCCCSSCSST----T-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred -----CcceEEEEeCCCceEee----c-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 45555555543322221 2 5688999999999999 799999999999999544 667777 665
Q ss_pred -CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-------eEEe----cCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 487 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 487 -~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~----~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
.|.+++|+| ||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. +
T Consensus 130 ~sv~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D 201 (588)
T 2j04_A 130 RTYHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----N 201 (588)
T ss_dssp TCEEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----T
T ss_pred ccEEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----C
Confidence 499999955 789999999999999999998753 3444 5667899999999999 666665 6
Q ss_pred eeEEEEeCCCCeE---EEEEe-eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 555 SFLVEWNESEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 555 ~~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
+.|++||+.++.. .+++. +|. ..|.+++|+ ++.+++++ +++|++||+.+++....... +...+..++|
T Consensus 202 ~tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~ 273 (588)
T 2j04_A 202 NSVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPL 273 (588)
T ss_dssp CCEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEE
T ss_pred CeEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEe
Confidence 6799999988874 34553 554 789999999 58888887 69999999998877444433 4567999999
Q ss_pred --ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccc
Q 001363 631 --NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1092)
Q Consensus 631 --s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1092)
+|++..+++++.||+ ++|.... +++ +||+..+++. |+
T Consensus 274 ~~s~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~ 312 (588)
T 2j04_A 274 NHEKESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EK 312 (588)
T ss_dssp TTCSSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HH
T ss_pred eeCCCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CC
Confidence 999999999999999 9999771 223 4677777775 89
Q ss_pred ccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec
Q 001363 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 754 (1092)
Q Consensus 709 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 754 (1092)
++++|+...+.. . ...+...|.+++|+|||+.+++++.
T Consensus 313 ~v~lW~~~g~~l------~--~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 313 KFKKWSTIWNEF------N--NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHTTTTTTSS------S--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEEECCCCce------e--eeccceEEEEEEECCCCCEEEEEEe
Confidence 999999753321 1 1123567999999999998887765
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=329.52 Aligned_cols=212 Identities=18% Similarity=0.295 Sum_probs=184.4
Q ss_pred EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-----ceeEEEecCCcCeEEEeecccCCccEEEEEecCC
Q 001363 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 509 (1092)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg 509 (1092)
..+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|++ ++.+|++|+.||
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg 452 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDG 452 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTS
T ss_pred hhcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCC
Confidence 357899999999999998644 8999999999999998763 45678899999999999965 678999999999
Q ss_pred eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001363 510 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 510 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
+|++||+.++.....+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|+
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 9999999999888899999999999999999999999987 667999998766554444333334588999999998
Q ss_pred C--CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 590 K--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 590 ~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
+ ..+++++.|++|++||+.+++....+..|. ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6 579999999999999999999998887664 469999999999999999999999999988664
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=311.00 Aligned_cols=296 Identities=16% Similarity=0.151 Sum_probs=250.2
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC------ceEEecCCCCceEEEEEccC----C---CEE
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTRMAYSAN----G---RRL 544 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~i~~~~~s~d----g---~~l 544 (1092)
...+.+|...|++++|++ .+|++++.||.|++||+.... ....+..+...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456679999999999965 599999999999999999988 67788889999999999999 9 999
Q ss_pred EEEecCCCCceeEEEEeCCCCeE-----EEEEeecccc--CCceEEEEEc----CCCCE-EEEEeCCCcEEEEECCC---
Q 001363 545 FSCGTSKEGESFLVEWNESEGAI-----KRTYQGLQLQ--HNSVSVVHFD----TAKDQ-ILAAGDDHVIKIWDMNK--- 609 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~--~~~v~~~~~~----~~~~~-l~~~s~dg~i~iwd~~~--- 609 (1092)
++++. ++.|++||+.+++. ...+..|..+ ...|.+++|+ |++++ +++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99986 56699999998886 7788777322 3789999999 99999 99999999999999988
Q ss_pred ---CceEE-----EEeC-----CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCC
Q 001363 610 ---VQLLT-----TIDA-----GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1092)
Q Consensus 610 ---~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1092)
++.+. .+.. ..+...+.+++|+|++ ++++++.||.|++||+.+++.+..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------- 225 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES-------------- 225 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec--------------
Confidence 66555 5543 3334568999999999 999999999999999875432221110
Q ss_pred ccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCC
Q 001363 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 756 (1092)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 756 (1092)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCC---CCCeeEEEEecCCCEEEEEe-C---CeEEEEE
Q 001363 757 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCFALSKNDAYLFSAS-G---GVISLYI 829 (1092)
Q Consensus 757 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~---~~~v~~~~~s~dg~~l~~~s-d---g~i~iwd 829 (1092)
. .+| ...|.+++|+|++++|++++ | +.|++||
T Consensus 226 ---------------------------------------~--~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d 264 (397)
T 1sq9_A 226 ---------------------------------------Q--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 264 (397)
T ss_dssp ---------------------------------------C--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------c--ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEE
Confidence 0 014 66788999999999999887 6 8999999
Q ss_pred cCCceeeEEecC-------------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec------cc-----
Q 001363 830 VMTFKTILTIMP-------------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------GH----- 885 (1092)
Q Consensus 830 ~~~~~~~~~~~~-------------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h----- 885 (1092)
+.+++.+..+.. |...|.+++|+| ++++|++++.||.|++||+.+++.+..+. +|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 265 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp TTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred CCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 999999999988 999999999999 89999999999999999999999999999 88
Q ss_pred ----------cCCeEEEEEcCCC----------CEEEEEeCCCcEEEEEcCCC
Q 001363 886 ----------SKRVTGLVFSDAL----------NILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 886 ----------~~~V~~l~~spdg----------~~l~s~s~Dg~I~iwd~~~~ 918 (1092)
...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999999875
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=294.83 Aligned_cols=252 Identities=17% Similarity=0.299 Sum_probs=213.2
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v 469 (1092)
+.+|...|.+++|+|+|++||+|+.|++|+|||+.++.. ....++.+|.++|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 223478899999999999864 77 8999999999999
Q ss_pred EECCCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccC-----
Q 001363 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 540 (1092)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d----- 540 (1092)
||+.+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999998865578999999999999999987642 4567788889999999997
Q ss_pred --------CCEEEEEecCCCCceeEEEEeCCCCe----EEEEEeeccccCCceEEEEEcCCC---CEEEEEeCCCcEEEE
Q 001363 541 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 605 (1092)
Q Consensus 541 --------g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iw 605 (1092)
+++|++++. ++.|++||..+++ ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 6679999998765 566777777 899999999984 789999999999999
Q ss_pred ECCCCc--e-EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 606 DMNKVQ--L-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 606 d~~~~~--~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
|+.++. . ...+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 998753 2 22332233445689999999999999999999999999763
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-32 Score=308.67 Aligned_cols=347 Identities=14% Similarity=0.131 Sum_probs=246.8
Q ss_pred ceeeecccCCCCceEEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.....+.+|.+.|++++|+| +++ +||+|+.||.|+|||+.+++.......... .........+|...|.+++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEE
T ss_pred cceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEE
Confidence 45677889999999999999 998 799999999999999999876653221100 0000001246999999999
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC---CCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
|+| ++.+|++++.|+.|++||+.+++... .+ .+...+.++.|++. +. ++++++.|+.|++||+.+++.+.
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCE
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceee
Confidence 999 88899999999999999999986554 23 37778999999884 44 79999999999999999999999
Q ss_pred EEecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc-eEEe---------------cCCCCceEEEEEccCCC
Q 001363 480 SFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA-RVDY---------------DAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~dg~ 542 (1092)
.+.+|...|.+++|++. +. ++++++.||.|++||++.... ...+ ..+...|.+++|+|+++
T Consensus 181 ~~~~~~~~v~~~~~~~~--~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 181 ILQGHRQEILAVSWSPR--YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp EECCCCSCEEEEEECSS--CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eecCCCCcEEEEEECCC--CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 99999999999999764 44 699999999999999987652 2222 45677899999999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
++++++. ++.|++||+.+++....+.++.. ....+........+..+++++.++.|++||+.+++.+..+..+.
T Consensus 259 ~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 259 HLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp EEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred EEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 9999986 56699999999887655443321 01222222333445677788889999999999999999998664
Q ss_pred CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcc
Q 001363 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 700 (1092)
..|.+++|+|++++|++++.||.|++|++.+.+.+......... ..+. ......
T Consensus 335 --~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~~ 388 (408)
T 4a11_B 335 --KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFEDA 388 (408)
T ss_dssp --SCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------
T ss_pred --CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------ccccee
Confidence 46999999999999999999999999999988766544322111 1111 123445
Q ss_pred ceeeccccccceeccc
Q 001363 701 EISVEAENKSEVEKPL 716 (1092)
Q Consensus 701 l~s~~~d~~i~lw~~~ 716 (1092)
..+.+.++.+++|+..
T Consensus 389 ~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 389 WSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------
T ss_pred ecccCccCceeecCCc
Confidence 5677788999999854
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=317.06 Aligned_cols=330 Identities=10% Similarity=0.037 Sum_probs=249.1
Q ss_pred CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
-..+|.+++|+|||+++++++. +++|+ |...++. +.+|. ..|.+++|+|+| .++.+.+|+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~---l~gh~---~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKD---INCNS---KNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSC---CSSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred hhccEEEEEECCCCCEEEEEcC----Cceee--cccccce---ecCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence 3468899999999999999986 67788 7555544 35766 899999999998 4555555554
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCc
Q 001363 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 687 (1092)
+. ...+.... ...|.+++|||+|.+||+++.||.+++|+... .+..+. |...+
T Consensus 75 ~~---~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~-------------------- 127 (588)
T 2j04_A 75 QQ---NGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL-------------------- 127 (588)
T ss_dssp CS---SCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred CC---ceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence 32 22222122 45799999999999999999999999999543 222221 11110
Q ss_pred eeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCC
Q 001363 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1092)
Q Consensus 688 ~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~ 767 (1092)
....+.+++|||||+.|++++.||+|++|++..+.
T Consensus 128 ---------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 128 ---------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp ---------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred ---------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 12358899999999999999999999999976531
Q ss_pred cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee---eEEe-cCCC
Q 001363 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPS 843 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---~~~~-~~~~ 843 (1092)
... +++ ..+........+|...|.+++|+||| +++++.|+++++||+.+++. .+++ .+|.
T Consensus 163 l~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~ 226 (588)
T 2j04_A 163 ENT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASR 226 (588)
T ss_dssp TTC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred ccc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence 100 000 00122222223588999999999999 55555689999999988774 3566 4788
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCCCcee
Q 001363 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQ 921 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~l~s~s~Dg~I~iwd~~~~~~~ 921 (1092)
..|.+++|+ ++.||+++ +++|++||+.+++......+|.+.|..++| +||+..|+++++||+ ++|..+.
T Consensus 227 ~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~---- 297 (588)
T 2j04_A 227 RKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE---- 297 (588)
T ss_dssp SCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS----
T ss_pred CcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc----
Confidence 899999998 37899887 699999999988874444489999999999 999999999999999 9999872
Q ss_pred eeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001363 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++
T Consensus 298 --------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 --------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp --------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEE
T ss_pred --------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEE
Confidence 5599999988875 9999999976444 332 333 77899999999999999886
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=304.85 Aligned_cols=290 Identities=12% Similarity=0.103 Sum_probs=247.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|..+|.+++|+|+|++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 45699999999999999999999999999999999875 113336789999999999999999 899999999999999
Q ss_pred CCCCceeEEE--ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEEE
Q 001363 472 AVTGSRTYSF--EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 472 ~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+.+++....+ ..|...|.+++|++ ++.+|++++.||.|++||++.... ......+...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 9998765444 67999999999965 668999999999999999998774 223356788999999999999999
Q ss_pred EEecCCCCceeEEEEeC------------------CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 546 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
+++. ++.|++||+ .+++.+..+.+|. ..+.+++|+|+++++++++.|+.|++||+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9986 566999994 4678888888777 89999999999999999999999999999
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC--Cce-----------------------------
Q 001363 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SNS----------------------------- 656 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~--~~~----------------------------- 656 (1092)
.+++.+..+..+. ..+.+++|+|++.+++++ .|+.|++|++.+ +..
T Consensus 232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 9999999988663 468999999999988887 899999999987 321
Q ss_pred ----------eeecccccCceeeeeecCCCccccccccCCceeecCCCCCCC---ccceeeccccccceecccc
Q 001363 657 ----------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV---KPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 657 ----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~s~~~d~~i~lw~~~~ 717 (1092)
.....+|...|.++++. +++| +++++++.||.|++|++..
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVL---------------------SGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEE---------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccCccccccccccccCCcceeEEe---------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence 11224788888888866 3566 8999999999999999864
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=287.81 Aligned_cols=282 Identities=16% Similarity=0.268 Sum_probs=236.9
Q ss_pred ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001363 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 416 (1092)
.++|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|.+++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999987 578774 8999999999999876522 5578899999999999999999999
Q ss_pred CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCcCeEEEeecc
Q 001363 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~i~~~~ 495 (1092)
|++|++||+++++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987655 67799988877655 455 7999999999999998876 45677889999999999854
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
++.++++++.||.|++||+.+.+. ......+...+..++++|++..++.... +..++.|++||...+......
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 668999999999999999987653 3455667778999999998776553322 133778999999988877665
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001363 572 QGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1092)
... ..+..+.|+|+++.+++++ .|+.|++||+.+++++..+..|. ..|.+++|+|+|++|++++.||+|+||
T Consensus 238 ~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 238 DAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp ECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 543 5799999999999988765 79999999999999999998664 579999999999999999999999999
Q ss_pred ECCCC
Q 001363 650 ETPES 654 (1092)
Q Consensus 650 ~~~~~ 654 (1092)
|+.+.
T Consensus 312 d~~~~ 316 (318)
T 4ggc_A 312 RCFEL 316 (318)
T ss_dssp CCSCC
T ss_pred ECCCC
Confidence 98754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=310.43 Aligned_cols=245 Identities=11% Similarity=0.136 Sum_probs=195.5
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
+...|.+++|+|+++++++++.||.+++|++..... .....+. +|...|.+++|+|
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------~~~~~~~--~h~~~v~~~~~s~ 65 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------KHARTFS--DHDKIVTCVDWAP 65 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE----------------------EECCCBC--CCSSCEEEEEECT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce----------------------EEEEEEe--cCCceEEEEEEeC
Confidence 456899999999999999999999999999864310 0111122 4899999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCce---eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce---eeEeecc-
Q 001363 813 NDAYLFSAS-GGVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---VISKLEG- 884 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---~~~~l~~- 884 (1092)
++++|++++ |+.|++||+.+++ ....+..|...|.+++|+| ++++|++|+.|+.|++||+.+++ ....+.+
T Consensus 66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 999999998 7999999999877 6777888999999999999 89999999999999999999887 4778887
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee-------------eeeeeecCCCCcCCCCCceEEEEccCCCEE
Q 001363 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-------------TCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 951 (1092)
|...|++++|+|++++|++++.|+.|++||+...+.. ...++... +|.. .|.+++|+|+|++|
T Consensus 145 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~v~~~~~sp~~~~l 220 (377)
T 3dwl_C 145 LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG---WVHAVGFSPSGNAL 220 (377)
T ss_dssp CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS---SEEEEEECTTSSCE
T ss_pred cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc---eEEEEEECCCCCEE
Confidence 9999999999999999999999999999999643211 12344444 4443 79999999999999
Q ss_pred EE-EeCCcEEEEEcCCcee----eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 952 LL-VHETHLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 952 a~-~~d~~i~lwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
++ +.|+.|++||+.+++. +.. +.+|...|.+++|+|||++|++++.|+.+ +|+..
T Consensus 221 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 221 AYAGHDSSVTIAYPSAPEQPPRALIT-VKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEETTTEEC-CEECSTTSCEEECCC-EECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEEeCCCcEEEEECCCCCCcceeeEe-ecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 98 5789999999999887 544 56799999999999999999988766655 67665
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=310.83 Aligned_cols=301 Identities=13% Similarity=0.199 Sum_probs=233.0
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC------------CcE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV 399 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~------------~~V 399 (1092)
.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ...-....+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCce
Confidence 3577999999999998 699999999999999998763110000 0000011266898 889
Q ss_pred EEEEECCCC--CEEEEEeCCCEEEEEEccCCCccc------------------------------------ceEE-Eccc
Q 001363 400 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQLE-IDAH 440 (1092)
Q Consensus 400 ~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~~~-~~~h 440 (1092)
.+++|+|++ .+|++++.|++|++||+.++.... .... ..+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999998743210 0011 3689
Q ss_pred ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC-CceeE-------EEecCCcCeEEEeecccCCc-cEEEEEecCCeE
Q 001363 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 511 (1092)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~-------~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i 511 (1092)
...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 2568999999999966 44 799999999999
Q ss_pred EEEEcCCCCc----eEEecCCCC------------ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeec
Q 001363 512 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 574 (1092)
Q Consensus 512 ~vwd~~~~~~----~~~~~~~~~------------~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~ 574 (1092)
++||+++... ...+..+.. .|.+++|+|+|++|++++. +.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence 9999998876 667777765 8999999999999998863 5799999997 8888888887
Q ss_pred cccCC------------ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----------------------
Q 001363 575 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 619 (1092)
Q Consensus 575 ~~~~~------------~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------------- 619 (1092)
..... .+..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876422111
Q ss_pred -------CCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 620 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 620 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.....|..++|+|++++||+++.++ +++|...
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998875 7777643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=298.58 Aligned_cols=253 Identities=15% Similarity=0.204 Sum_probs=205.6
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
..+.+|++.|++++|+|+|+ +||+|+.|++|+|||+.++..... ..+.+|...|.+++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence 56789999999999999998 699999999999999988753221 12778999999999987
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCCce---eEE
Q 001363 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS 480 (1092)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~---~~~ 480 (1092)
++++||+|+.|++|++||+.++... ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence 4899999999999999999986422 23367899999999999998 66 799999999999999987632 345
Q ss_pred EecCCcCeEEEeecccC---------------CccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEccCC-
Q 001363 481 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG- 541 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~---------------~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~dg- 541 (1092)
+.+|...|.+++|++.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 57899999999997752 14689999999999999997553 445677888999999999987
Q ss_pred ---CEEEEEecCCCCceeEEEEeCCCC---e-EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001363 542 ---RRLFSCGTSKEGESFLVEWNESEG---A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 542 ---~~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++|++++. ++.|++|+..+. . ....+..|. ..|.+++|+|++++|++++.|++|++|+..
T Consensus 226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999886 678999998763 1 223445555 899999999999999999999999999975
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=301.83 Aligned_cols=294 Identities=17% Similarity=0.226 Sum_probs=245.3
Q ss_pred eeecCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEEccCCCcccceEEEc--ccccceeEEEEecC----CCcEEEE
Q 001363 390 ALVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVI 459 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d----~~~l~l~ 459 (1092)
.+..+|..+|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ ++ +|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~ 89 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLA 89 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEE
Confidence 346689999999999984 4566666677799999999887665443332 26678999999999 55 799
Q ss_pred EEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCceEEEE
Q 001363 460 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMA 536 (1092)
Q Consensus 460 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~ 536 (1092)
+|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...|.+++
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 9999999999999999999999999999999999762 5679999999999999999998887777 67888999999
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee-------------------------ccccCCceEEEEEcCCCC
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~ 591 (1092)
|+|+++++++++. ++.|++||+.+++....+.. ...+...|.+++|+ ++
T Consensus 169 ~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 242 (366)
T 3k26_A 169 YDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD 242 (366)
T ss_dssp ECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred ECCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence 9999999999986 56699999998765543332 00133889999998 67
Q ss_pred EEEEEeCCCcEEEEECCCCce--------------EEEEeCCCCCCCCceEEEccC--CCEEEEEeCCCeEEEEECCCCc
Q 001363 592 QILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
++++++.|+.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++++.||.|++|++.+++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 999999999999999987654 5666655 346899999999 9999999999999999999875
Q ss_pred e----eeecccc--cCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 656 S----VDAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 656 ~----~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
. ...+.+| ...|.+++|+ |+++++++++.|+.|++||+.
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred CccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence 3 3366666 6889988886 788999999999999999964
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=297.62 Aligned_cols=293 Identities=13% Similarity=0.164 Sum_probs=241.4
Q ss_pred eeecCCCCcEEEEEECCCCCEEE-EEeC---CCEEEEEEccCCCcccceEEEcccccceeEEEEecC---CCcEEEEEEe
Q 001363 390 ALVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG 462 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~ 462 (1092)
.++.+|...|.+++|+|++..++ +|+. |+.|++||+.+++.... ...+|...|.+++|+|+ ++ +|++|+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 34678999999999999996655 5555 89999999998764432 23379999999999999 57 799999
Q ss_pred CCCcEEEEECCCCc-eeEEEecCCcCeEEEeecc----cCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCC----ce
Q 001363 463 DDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GC 532 (1092)
Q Consensus 463 ~d~~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~----~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~----~i 532 (1092)
.|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+.... ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 99999999999998 8899999999999997643 5678899999999999999999887 5666655443 78
Q ss_pred EEEE----EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC---CCCEEEEEeCCCcEEEE
Q 001363 533 TRMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 533 ~~~~----~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~s~dg~i~iw 605 (1092)
.+++ |+|+++++++++. ++.|++||+.+++.... ..+. ..+.+++|+| ++.++++++.||.|++|
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 8888 7889999999986 66799999999987544 4444 7899999999 99999999999999999
Q ss_pred ECCCCceEEEEe---CCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC-------------------ceeeeccc
Q 001363 606 DMNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGV 662 (1092)
Q Consensus 606 d~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~ 662 (1092)
|+.+++....+. ...+...|.+++|+|+++ ++++++.||.|++|++..+ +.+..+.+
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319 (357)
T ss_dssp EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence 998766544332 112345799999999998 8999999999999998754 34566777
Q ss_pred ccCceeeeeecCCCccccccccCCceeecCCCCCCCccce-eeccccccceeccc
Q 001363 663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL 716 (1092)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-s~~~d~~i~lw~~~ 716 (1092)
|...|.+++|+ |+++.++ +++.|+.+++|++.
T Consensus 320 ~~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 320 STQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECC
Confidence 88888888886 7788888 89999999999976
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=286.20 Aligned_cols=281 Identities=15% Similarity=0.174 Sum_probs=247.0
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
.+.+|...|.+++| |++++|++++.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 37899999999999 999999999999999999998875444 5678999999999999999 89999999999999
Q ss_pred ECCCC---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCEEEE
Q 001363 471 DAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFS 546 (1092)
Q Consensus 471 d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~ 546 (1092)
++... +.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.++++.| +++++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 98754 667888999999999998 346999999999999999 5666777888999999999998 9999999
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEee-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
++. ++.|++|| .++....+.. +. ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+. ..|
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i 228 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFV 228 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceE
Confidence 986 56699999 5666667766 44 8899999999987 9999999999999999999999988664 469
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
.+++|+|++ .+++++.||.|++||+.+++....+..+...+.+++++ |+++ +++++
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~ 284 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGS 284 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEE
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEe
Confidence 999999999 58899999999999999999999999999999999997 5666 66789
Q ss_pred cccccceecccccc
Q 001363 706 AENKSEVEKPLFAR 719 (1092)
Q Consensus 706 ~d~~i~lw~~~~~~ 719 (1092)
.|+.+++|++....
T Consensus 285 ~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 285 SDNLVRIFSQEKSR 298 (313)
T ss_dssp TTSCEEEEESCGGG
T ss_pred CCCcEEEEeCCCCc
Confidence 99999999987543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=295.26 Aligned_cols=287 Identities=9% Similarity=0.053 Sum_probs=242.1
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
....+|.+.|++++|+|+++ +|++|+.|+.|+|||+.+++..... ..+.+|...|.+++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~ 67 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEES
T ss_pred ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCC
Confidence 44568999999999999998 6899999999999999988722110 014479999999999999
Q ss_pred CC-EEEEEeCCCEEEEEEc-cCCCcccceEEEcc--cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC---------
Q 001363 408 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--------- 474 (1092)
Q Consensus 408 g~-~las~~~d~~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~--------- 474 (1092)
++ +|++|+.|+.|++||+ .+++. ..+.+ |...|.+++|+| ++ .+++++.|+.|++||+.+
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence 99 9999999999999999 87653 35778 999999999999 77 899999999999999988
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCc--eEEecCCCCceEEEEEcc-CCCEEEEEecC
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSA-NGRRLFSCGTS 550 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~--~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~ 550 (1092)
++++..+. |...|.+++|++ ++ +++++.||.|++||++. ... ......+...+.+++|+| +++++++++.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~- 214 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI- 214 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence 77777776 889999999964 33 99999999999999988 443 335556777899999999 9999999986
Q ss_pred CCCceeEEEEeCCCC------eEEEEEeeccc------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 551 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
++.|++|+...+ +....+..|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 667999999887 77778887751 124899999999999999999999999999999999888875
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCe-EEEEE
Q 001363 619 GGGLPENPRICFNKNGTLLAVIANENR-IKILE 650 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~ 650 (1092)
+. ...|.+++ |++++|++++.||. .+.+.
T Consensus 292 ~h-~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FN-EDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CS-SSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cc-CCCceEec--CCCCeEEEEecCCccccccc
Confidence 51 24588888 99999999999998 54444
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-31 Score=302.03 Aligned_cols=280 Identities=21% Similarity=0.311 Sum_probs=241.6
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
....+|...|.|++| +++ ++++|+.||+|++||+.+++.+.. +.+|...|.+++| +
T Consensus 127 ~~~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~ 182 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--D 182 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--C
T ss_pred ecccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--C
Confidence 344567778999887 777 689999999999999999987765 7789999999999 8
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee---EEEecC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGH 484 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~---~~~~~~ 484 (1092)
+++|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.+++.. ..+.+|
T Consensus 183 ~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 255 (435)
T 1p22_A 183 ERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255 (435)
T ss_dssp SSEEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence 8999999999999999999987654 6789999999999974 4 7999999999999999988766 677899
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
...|.++++ ++.++++|+.||.|++||+++.+....+..+...+.++.+ +++++++++. ++.|++||+.+
T Consensus 256 ~~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~ 325 (435)
T 1p22_A 256 RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIEC 325 (435)
T ss_dssp SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTT
T ss_pred CCcEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCC
Confidence 999999998 5579999999999999999999999999999999999988 5789999886 56699999999
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------eEEEEeCCCCCCCCceEEEccCCC
Q 001363 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGT 635 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1092)
++.+..+.+|. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..|. ..|.+++| ++.
T Consensus 326 ~~~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~ 396 (435)
T 1p22_A 326 GACLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEF 396 (435)
T ss_dssp CCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSS
T ss_pred CCEEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCC
Confidence 99999999887 88999998 77899999999999999997766 777776554 46899999 788
Q ss_pred EEEEEeCCCeEEEEECCCCcee
Q 001363 636 LLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 636 ~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
+|++++.||.|++||+.+....
T Consensus 397 ~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 397 QIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp CEEECCSSSEEEEEC-------
T ss_pred EEEEEeCCCEEEEEECCCCCCc
Confidence 9999999999999999876443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-31 Score=295.60 Aligned_cols=294 Identities=17% Similarity=0.203 Sum_probs=241.9
Q ss_pred CCcceeeecccCCCCceEEeecCC---CceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001363 322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spd---g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
.|...+..+.+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|..
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~ 87 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG 87 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence 456677899999999999999999 56 799999999999999998 444311 1667999
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEE--ecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
.|.+++|+|++++|++++.|+.|++||+.+++.+. +.+|...|.+++| +++++ +|++++.|+.|++||+.++
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence 99999999999999999999999999999876443 5679999999999 88888 8999999999999999999
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCE----EEEEec
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT 549 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~----l~~~~~ 549 (1092)
+.+..+..+. .+.++.+. ...+++++.++.+++|+++......... .....+.++++.++... +++++.
T Consensus 162 ~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 162 NPMMVLQLPE-RCYCADVI----YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp SCSEEEECSS-CEEEEEEE----TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred cEEEEEecCC-CceEEEec----CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 9999998765 56566553 2478999999999999998776554332 23445667777666654 888875
Q ss_pred CCCCceeEEEEeCCCC---eEEEEEeecccc---------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 550 SKEGESFLVEWNESEG---AIKRTYQGLQLQ---------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
++.|++||.... ..+..+.+|... ...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 677999999987 556677776610 1169999999999999999999999999999999998887
Q ss_pred CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
.+ ...|.+++|+|++++|++++.|+..+.|+.
T Consensus 313 ~~--~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 313 QL--DQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CC--SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CC--CCCceEEEECCCCCeEEEEecccccccccc
Confidence 65 346999999999999999999875554443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=299.31 Aligned_cols=281 Identities=19% Similarity=0.237 Sum_probs=242.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
..+.|+||++ ++||+|. |++|+|||..+|+..... .+.+|...|++++|+|||+ +|++|+.|++|+|||+++++.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 4677999986 4788775 899999999999765532 4567888999999999999 899999999999999999999
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
+..+.+|...+.++++ ++.+|++|+.|+.+++||...... ...+..|...+..+.++|+++++++++. ++.
T Consensus 182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~ 253 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL 253 (420)
T ss_dssp EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence 9999999999999877 447999999999999999987554 4567889999999999999999999986 566
Q ss_pred EEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEE-EE--EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 557 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 557 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
+++|+..+++. +.....|. ..|.+++|+|.+..+ ++ |+.|++|++||+.+++....+..+. .+.++.
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~ 327 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL 327 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence 99999987753 34445555 899999999986544 44 3579999999999999999887653 478999
Q ss_pred EccCCCEEEEEe--CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 630 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 630 ~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
|+|+++.+++++ .|+.|+|||+.+++.+..+.+|...|.+++|+ |||+++++++.|
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D 385 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD 385 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence 999999998876 68999999999999999999999999999996 789999999999
Q ss_pred cccceecccccc
Q 001363 708 NKSEVEKPLFAR 719 (1092)
Q Consensus 708 ~~i~lw~~~~~~ 719 (1092)
++|++|++....
T Consensus 386 ~tvriWdv~~~~ 397 (420)
T 4gga_A 386 ETLRLWRCFELD 397 (420)
T ss_dssp TEEEEECCSCSS
T ss_pred CeEEEEECCCCC
Confidence 999999976443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-31 Score=291.27 Aligned_cols=251 Identities=18% Similarity=0.318 Sum_probs=205.6
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~ 468 (1092)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999886421 23468899999999999863 77 799999999999
Q ss_pred EEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccC---
Q 001363 469 VWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 540 (1092)
Q Consensus 469 vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d--- 540 (1092)
+||++++ +.+..+.+|...|.+++|+|..++.+|++++.||+|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999987 4667888999999999998876688999999999999999987643 2345567778999999997
Q ss_pred --------------CCEEEEEecCCCCceeEEEEeCCCC---eEEEEEeeccccCCceEEEEEcCCC----CEEEEEeCC
Q 001363 541 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD 599 (1092)
Q Consensus 541 --------------g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~d 599 (1092)
+++|++++. ++.|++||...+ +.+..+.+|. ..|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence 468888875 667999999755 4566777777 899999999986 789999999
Q ss_pred CcEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 600 HVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 600 g~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
++|++|++.+.. ....+..+ ...|.+++|+|++++|++++.|+.|++|+...
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999999987631 11223322 34689999999999999999999999999763
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-30 Score=297.70 Aligned_cols=298 Identities=13% Similarity=0.165 Sum_probs=241.8
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCCEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 413 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las 413 (1092)
....+++++|+...++++|+.||.|+||++........ ....+.+|...|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35667999999876777789999999999966432210 0012678999999999999 9999999
Q ss_pred EeCCCEEEEEEccCCCcc----cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE--ecCCcC
Q 001363 414 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP 487 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~ 487 (1092)
|+.|++|++||+.++... .....+.+|...|.+++|+|+++. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987432 233468899999999999999843 7999999999999999999999999 889999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+... +..++|+|++++++++.. +..++.|++||..++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 99999965 6789999999999999999998888777 566654 899999999999888732 123788999999987
Q ss_pred eE-EEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCce-EEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 566 AI-KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 566 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
+. +...... +...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .
T Consensus 256 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 256 EEPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp SSCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred cCCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 65 3333211 1367999999999999975 55799999999999884 555544444467999999999998764 5
Q ss_pred CCeEEEEECCCCc
Q 001363 643 ENRIKILETPESN 655 (1092)
Q Consensus 643 dg~i~iw~~~~~~ 655 (1092)
++.+++|++.++.
T Consensus 332 ~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 332 CEIARFYKLHERK 344 (402)
T ss_dssp TEEEEEEEEETTE
T ss_pred ceeEEEEEcCCCc
Confidence 6799999998764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=289.95 Aligned_cols=307 Identities=10% Similarity=0.103 Sum_probs=227.2
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
...+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++...... ...+.+|...|.+++|+|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~ 67 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWAS 67 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECC
T ss_pred cccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcC
Confidence 356789999999999999998 6899999999999999987533211 112678999999999999
Q ss_pred --CCCEEEEEeCCCEEEEEEccCCCcc------cceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCCc
Q 001363 407 --DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 407 --dg~~las~~~d~~i~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
|+++|++++.|+.|++||+.+++.. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++
T Consensus 68 ~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTT
T ss_pred CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChH
Confidence 6999999999999999999987431 334467899999999999999 88 89999999999999999887
Q ss_pred eeEEEe-------------cCCcCeEEEeeccc-CCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccC
Q 001363 477 RTYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN 540 (1092)
Q Consensus 477 ~~~~~~-------------~~~~~v~~i~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d 540 (1092)
.+..+. +|...+.+++|++. .++.++++++.++.+.+|+...... ...+..|...|.+++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence 665443 57888999999764 1357999999999998888777665 5567778889999999999
Q ss_pred C----CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE----eCCCcEEEEECCCCce
Q 001363 541 G----RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 541 g----~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----s~dg~i~iwd~~~~~~ 612 (1092)
+ ++|++++. ++.|++||+.++.......... .........+....+..+ .....+.+|+....+.
T Consensus 226 ~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 226 IGRWYQLIATGCK----DGRIRIFKITEKLSPLASEESL---TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp SSCSSEEEEEEET----TSCEEEEEEEECC------------------------------------------CCSEEEEE
T ss_pred CCCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcc---cceeccCCCcccccccccccccccceeeeecccccccE
Confidence 8 78999886 6679999998776544433322 333333344443333333 3445566677667777
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeec
Q 001363 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1092)
+..+..|. ..|.+++|+|++++|++++.||.|++|++.++..+..+
T Consensus 299 ~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 299 LSEHDDHN--GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECTTS--SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEeccc--ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 77777553 46999999999999999999999999999987655543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=292.58 Aligned_cols=285 Identities=15% Similarity=0.156 Sum_probs=242.4
Q ss_pred ecCCCCc--EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 392 VRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 392 l~~h~~~--V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
..+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~i 160 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDI 160 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEE
Confidence 3355554 45566664 56888889999999999998755422 223889999999999999 8999999999999
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
||+.+++.+..+.+|...|.+++| ++.++++++.||.|++||++. ......+..|...|.+++|+|+++++++++
T Consensus 161 wd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 161 YDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 999999999999999999999998 346999999999999999994 555667888999999999999999999998
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-Ee--CCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
. ++.|++||+.+++.+..+..|. ..|.+++|+|++..+++ ++ .|+.|++||+.+++.+..+..+ ..+
T Consensus 237 ~----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v 306 (401)
T 4aez_A 237 N----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQV 306 (401)
T ss_dssp T----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCE
T ss_pred C----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcE
Confidence 6 5669999999999998888877 89999999998755554 44 6999999999999999888754 358
Q ss_pred ceEEEccCCCEEEEEe--CCCeEEEEECCCCceee--ecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 626 PRICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
.+++|+|+++++++++ .||.|++|++.++.... .+.+|...|.+++++ |+++++
T Consensus 307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l 364 (401)
T 4aez_A 307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRIL 364 (401)
T ss_dssp EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEE
T ss_pred EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEE
Confidence 9999999999999954 89999999999865444 466888899988886 789999
Q ss_pred eeeccccccceeccccc
Q 001363 702 ISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~ 718 (1092)
++++.|+.+++|++..+
T Consensus 365 ~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 365 STAASDENLKFWRVYDG 381 (401)
T ss_dssp EEECTTSEEEEEECCC-
T ss_pred EEEeCCCcEEEEECCCC
Confidence 99999999999998744
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=278.05 Aligned_cols=277 Identities=19% Similarity=0.252 Sum_probs=236.8
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
.++|+||+++ +||+| .|++|+|||+.+++.++.. .+.+|...|++++|+|+++ ++++|+.|++|++||+++++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5679999986 77776 5899999999999866533 4567888999999999999 8999999999999999999999
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
..+.+|...+.++.+ ++..+++++.++.+++|+...... ...+..|...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988765 346899999999999999887655 4567788899999999999999999986 6679
Q ss_pred EEEeCCCCeEE----EEEeeccccCCceEEEEEcCCCCEEE---EEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 558 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 558 ~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~---~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
++||..+++.. .....+ ...|..+.++|++..++ +++.+++|++||............. ..+..++|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~---~~v~~~~~ 248 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQH---QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILW 248 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCC---CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS---SCEEEEEE
T ss_pred eEEECCCCcccccceeeeccc---CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce---eeeeeeee
Confidence 99999887543 223333 37899999999876543 4568899999999998887776544 34889999
Q ss_pred ccCCCEEEEEe--CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccc
Q 001363 631 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1092)
Q Consensus 631 s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1092)
+|+++.+++++ .|+.|++||+.+++.+..+.+|...|.+++|+ ||++++++++.|+
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~ 306 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADE 306 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTT
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCC
Confidence 99999888765 68999999999999999999999999999996 7899999999999
Q ss_pred ccceeccc
Q 001363 709 KSEVEKPL 716 (1092)
Q Consensus 709 ~i~lw~~~ 716 (1092)
+|++||+.
T Consensus 307 ~v~iWd~~ 314 (318)
T 4ggc_A 307 TLRLWRCF 314 (318)
T ss_dssp EEEEECCS
T ss_pred eEEEEECC
Confidence 99999975
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=297.48 Aligned_cols=253 Identities=14% Similarity=0.227 Sum_probs=207.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc--------ccceEEEcccc------------cceeEEEEecCC-
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC- 453 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~~~~s~d~- 453 (1092)
|.+.|.+++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. +.|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 678999999999999999999999999999998752 11344678998 889999999998
Q ss_pred -CcEEEEEEeCCCcEEEEECCCCcee---------------------------------------EE-EecCCcCeEEEe
Q 001363 454 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC 492 (1092)
Q Consensus 454 -~~l~l~s~~~d~~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~i~ 492 (1092)
. .|++++.|++|++||+.++... .. ..+|...|.+++
T Consensus 107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 7999999999999998775432 12 367999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEE--------ecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCC
Q 001363 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
|++ ++.+|++| .||.|++||++....... +..+...|.+++|+|++ +++++++. ++.|++||+.
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~ 257 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR 257 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence 966 67899998 899999999985443332 45678899999999999 89999986 5679999999
Q ss_pred CCeE----EEEEeeccc---------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCC-----
Q 001363 564 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE----- 624 (1092)
Q Consensus 564 ~~~~----~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~----- 624 (1092)
+++. +..+.++.. +...|.+++|+|+++++++++. +.|++||+.+ ++.+..+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 9887 677777650 0128999999999999999999 9999999997 888888876643111
Q ss_pred --------CceEEEccCCCEEEEEeCCCeEEEEECCCCcee
Q 001363 625 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 625 --------v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988665
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=288.98 Aligned_cols=255 Identities=17% Similarity=0.302 Sum_probs=217.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v 469 (1092)
+.+|...|.+++|+|++++||+|+.|+.|++||+..+. ......+.+|...|++++|+++ ++ +|++++.|+.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 77899999999999999999999999999999998432 2333468899999999999987 77 8999999999999
Q ss_pred EECCCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEcc------
Q 001363 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 539 (1092)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 539 (1092)
||+.+++ .+..+.+|...|.+++|++..++.+|++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888899999999999776437899999999999999998874 4456677888999999999
Q ss_pred -------CCCEEEEEecCCCCceeEEEEeCCCCe----EEEEEeeccccCCceEEEEEcCC---CCEEEEEeCCCcEEEE
Q 001363 540 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 605 (1092)
Q Consensus 540 -------dg~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iw 605 (1092)
++.++++++. ++.|++||+.++. ....+.+|. ..|.+++|+|+ +.++++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 5569999998764 445666666 89999999999 8999999999999999
Q ss_pred ECCCCc---eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce
Q 001363 606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
|+.++. .........+...+.+++|+|++++|++++.||.|++|++.....
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 999875 333333333456789999999999999999999999999886543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-30 Score=289.34 Aligned_cols=263 Identities=13% Similarity=0.151 Sum_probs=216.6
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
++.++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+..... ..+.+|...|.+++|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-----------------~~~~~h~~~v~~~~~~ 64 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWA 64 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEEC
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceee-----------------eEecCCCCcEEEEEeC
Confidence 4577899999999999999998 689999999999999984332211 1267899999999999
Q ss_pred CC--CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCCc--eeE
Q 001363 406 PD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTY 479 (1092)
Q Consensus 406 pd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~~~ 479 (1092)
|+ +++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ...
T Consensus 65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~ 141 (379)
T 3jrp_A 65 HPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPI 141 (379)
T ss_dssp CGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEE
T ss_pred CCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeE
Confidence 87 999999999999999999987521 23367789999999999999 88 89999999999999999874 445
Q ss_pred EEecCCcCeEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEccC---C
Q 001363 480 SFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSAN---G 541 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~d---g 541 (1092)
.+.+|...|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ +
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 677899999999997742 5789999999999999999876643 466778889999999999 8
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 001363 542 RRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 613 (1092)
++|++++. ++.|++||+.++... ........+...|.+++|+|+++++++++.||.|++|++..+...
T Consensus 222 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 222 SYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred CeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 99999986 566999999887421 112121123478999999999999999999999999999855433
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=291.29 Aligned_cols=275 Identities=16% Similarity=0.241 Sum_probs=239.2
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001363 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 89999999999999999999987554 68899999999999 677 8999999999999999
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCCCEEEEEec
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
.+++.+..+.+|...|.+++|+ +.++++|+.||.|++||+.+.... ..+..+...|.++++ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 359999999999999999987765 567788889999998 7889999986
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
++.|++||+.+++.+..+.+|. ..+.++.++ ++++++|+.||.|++||+.+++.+..+..+. ..|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEE
Confidence 6779999999999999999887 889999884 6799999999999999999999999988654 4588888
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCc---------eeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcc
Q 001363 630 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 700 (1092)
| ++.++++++.||.|++||+.++. .+..+.+|...|.++++. ++.
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~ 397 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ 397 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence 8 78999999999999999987655 677788888888777663 678
Q ss_pred ceeeccccccceecccccc
Q 001363 701 EISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 701 l~s~~~d~~i~lw~~~~~~ 719 (1092)
+++++.||.|++|++....
T Consensus 398 l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEECCSSSEEEEEC-----
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 9999999999999987543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-29 Score=280.00 Aligned_cols=290 Identities=17% Similarity=0.152 Sum_probs=238.5
Q ss_pred ecCCCCcEEEEEECCC---CCEEEEEeCCCEEEEEEccC-CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 392 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+.+|.+.|.+++|+|+ |++|++|+.||.|++||+.+ +..+ ...+.+|.+.|.+++|+|+++ +|++++.|+.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v 110 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA 110 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence 7789999999999999 69999999999999999997 4332 135778999999999999999 89999999999
Q ss_pred EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..++++
T Consensus 111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 999999998776 5579999999999777788999999999999999999988887777665 455555554 466666
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE----EEEEeCCCcEEEEECCCC---ceEEEEeCCC
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG 620 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~s~dg~i~iwd~~~~---~~~~~~~~~~ 620 (1092)
+. ++.+.+|+.............. ....+.++.+.++... +++++.||.|++|++... .....+..+.
T Consensus 187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 65 5569999998765443322211 2345666666665544 999999999999999987 4556665543
Q ss_pred CC----------CCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceee
Q 001363 621 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1092)
Q Consensus 621 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 690 (1092)
.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...+.+++|+
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----------------- 324 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN----------------- 324 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence 21 158999999999999999999999999999999999999999999999996
Q ss_pred cCCCCCCCccceeeccccccceeccc
Q 001363 691 NEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|+++++++++.|+..+.|++.
T Consensus 325 -----~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 -----HNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -----TTSSCEEEEECCCSTTCGGGC
T ss_pred -----CCCCeEEEEeccccccccccc
Confidence 789999999999877777644
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=280.67 Aligned_cols=285 Identities=10% Similarity=-0.001 Sum_probs=240.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..+|.+.|.+++|+|++++|++++.|+.|++||+.++........+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999987632233356689999999999999872 388899999999999
Q ss_pred C-CCCceeEEEec--CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC---------CCceEEecCCCCceEEEEEcc
Q 001363 472 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 539 (1092)
Q Consensus 472 ~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~i~~~~~s~ 539 (1092)
+ .+++. ..+.+ |...|.+++|++ +.++++++.||.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 77888 999999999976 57999999999999999987 55555555 777899999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----
Q 001363 540 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 610 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~----- 610 (1092)
++ +++++. ++.|++||+.+ +.. ......+. ..+.+++|+| +++++++++.||.|++|++...
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777765 66799999988 543 22333333 7899999999 9999999999999999999887
Q ss_pred -ceEEEEeCCCC-------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccc-cCceeeeeecCCCccccc
Q 001363 611 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 681 (1092)
Q Consensus 611 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ 681 (1092)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++ |
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~------- 302 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C------- 302 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence 77777776643 337899999999999999999999999999999999999988 88887776 2
Q ss_pred cccCCceeecCCCCCCCccceeeccccc-cceecc
Q 001363 682 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP 715 (1092)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~-i~lw~~ 715 (1092)
+++++++++.|+. .+.+..
T Consensus 303 ---------------~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 303 ---------------SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred ---------------CCCeEEEEecCCcccccccc
Confidence 5788999999998 777664
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=278.82 Aligned_cols=295 Identities=11% Similarity=0.123 Sum_probs=222.3
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEec--CCCcEEEEEEeCCCcE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI 467 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i 467 (1092)
++.+|.+.|.+++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| |++ +|++++.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47899999999999999999999999999999999976432 33446779999999999999 588 89999999999
Q ss_pred EEEECCCC---------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec------------
Q 001363 468 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------------ 526 (1092)
Q Consensus 468 ~vwd~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------ 526 (1092)
++||+.++ +.+..+.+|...|.+++|++..++.+|++++.||.|++||+++.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999987 567888999999999999775337899999999999999998876543221
Q ss_pred -CCCCceEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCC----CEEEEE
Q 001363 527 -APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA 596 (1092)
Q Consensus 527 -~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 596 (1092)
.+...+.+++|+|+ +..+++++. ++.+.+|+...+.. +..+.+|. ..|.+++|+|++ ++++++
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence 45668999999997 889999876 66688888777765 55666666 899999999998 799999
Q ss_pred eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE----eCCCeEEEEECCCCceeeecccccCceeeeee
Q 001363 597 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI----ANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1092)
Q Consensus 597 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 672 (1092)
+.||.|++||+.++......... .........++....++.+ .....+.+|+....+.+..+.+|...|.+++|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp ETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred cCCCeEEEEeCCCCcCccccCCc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 99999999999876554433222 1122333334443333333 23445566666666788888999999999999
Q ss_pred cCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001363 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~ 718 (1092)
+ |+++++++++.|+.|++|++...
T Consensus 315 s----------------------~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 315 N----------------------LTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp C----------------------SSSCCEEEEETTSCEEEEEECTT
T ss_pred c----------------------CCCCEEEEecCCCcEEEEecCcC
Confidence 6 78899999999999999998743
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=283.34 Aligned_cols=306 Identities=11% Similarity=-0.006 Sum_probs=234.5
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCC---eeEEeeeeee---eccc--------------------------
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKVW---DIGA-------------------------- 382 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~---~~~~~~~~~~---d~~~-------------------------- 382 (1092)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.......- ....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3899999999999 55555 46899999999998 4433211000 0000
Q ss_pred ------ccceeeEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEcc--CCCcccceEEEcccccceeEEEEecCC
Q 001363 383 ------CSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAPC 453 (1092)
Q Consensus 383 ------~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~ 453 (1092)
...........+|...|.+++|+|+|++| |+++.|+.|++||+. +++.+.... ...|...|.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCC
Confidence 00000111234677789999999999996 889999999999999 776655321 12567899999999999
Q ss_pred CcEEEEEEeCCCcEEEEECCCCceeE----EEecCCcCeEEEeeccc-CCccEEEEEecCCeEEEEEcCCCCceEE-ecC
Q 001363 454 KQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD-YDA 527 (1092)
Q Consensus 454 ~~l~l~s~~~d~~i~vwd~~~~~~~~----~~~~~~~~v~~i~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~ 527 (1092)
+ +|++|+.|+.|++|++.+++... .+.+|...|.+++|++. ..+.+|++++.|+.|++||+.+...... +..
T Consensus 162 ~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 162 T--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp S--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred C--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 9 89999999999999998887554 77899999999999774 2268999999999999999998887776 557
Q ss_pred CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc----------------------ccCCceEEEE
Q 001363 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSVSVVH 585 (1092)
Q Consensus 528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v~~~~ 585 (1092)
|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. .....+..++
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 314 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII 314 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred CCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence 88999999999 9999999986 6789999999999988886431 1235789999
Q ss_pred EcCCCCEEEEEe-CCCcEEEEEC--CCC---ceEEEEeCCCCCCCCceEEEccCCCEEEEEeC------CCeEEEEECCC
Q 001363 586 FDTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE 653 (1092)
Q Consensus 586 ~~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~ 653 (1092)
|+|+++++++++ .++.|++|++ .++ ..+..+..+ ..+.+++|+|++.++++++. +..|.+|.+..
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999999999998 8999999999 555 566667655 45899999996544443332 45578887653
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-27 Score=271.02 Aligned_cols=350 Identities=12% Similarity=0.082 Sum_probs=260.0
Q ss_pred ceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEc
Q 001363 347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAY 425 (1092)
Q Consensus 347 ~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~ 425 (1092)
++++++++.|+.|++||+.+++.+.. +..| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35889999999999999999987754 3344 458999999999987 56668999999999
Q ss_pred cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEE-EE
Q 001363 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FS 504 (1092)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s 504 (1092)
.+++.+. .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++ +++.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence 9987554 444444 8999999999994 3456667899999999999998888754 4678888865 55666 78
Q ss_pred EecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEE
Q 001363 505 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV 584 (1092)
Q Consensus 505 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 584 (1092)
++.++.|++||+.+.+....+..+ ..+..++|+|++++++.++. .++.|++||+.+++.+..+..+ ..+.++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~ 205 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGI 205 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccce
Confidence 888999999999988777766654 45689999999998865442 2667999999999888777642 578999
Q ss_pred EEcCCCCEEEEEe---CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCceeeec
Q 001363 585 HFDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 585 ~~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~ 660 (1092)
+|+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 9999999999987 78999999999999988887653 36889999999987 56678999999999999888777
Q ss_pred ccccCcee---eeeecCCCccccccccCCceeecCCC----CCCC--ccceeeccccccceeccccccCccccccccCCc
Q 001363 661 GVLSDNLR---KLSVNPISTVTGAGIANGSVSVNEDP----KEDV--KPEISVEAENKSEVEKPLFARPSECQSLLLPSK 731 (1092)
Q Consensus 661 ~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~----s~d~--~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~ 731 (1092)
..+..+.. .+...|.+.... ...|.... .+.. ..+...+.+...++|++..+....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~------~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~--------- 347 (391)
T 1l0q_A 283 AVGKNPYASGQFIGSIPVQPVYP------SADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK--------- 347 (391)
T ss_dssp ECSSSEECCSSCEEECSSCCCCC------BCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC---------
T ss_pred ECCcCCCccceeeeccccccccc------ccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC---------
Confidence 66654432 123333222110 11111110 0111 335556667888999976433211
Q ss_pred cccccEEEEEEecCCcEEEEee
Q 001363 732 VKANKISRLTYNNGGQAIFALA 753 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~ 753 (1092)
+.. ....|+++|.+.+...
T Consensus 348 -~~~--~~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 348 -KQN--PTHTYSETGIYTVRLT 366 (391)
T ss_dssp -SSS--CEECCSSCEEEEEEEE
T ss_pred -cCC--CeEEeCCCceEEEEEE
Confidence 111 2357888888766543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=275.26 Aligned_cols=282 Identities=13% Similarity=0.120 Sum_probs=215.9
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
.+.++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++..... +...+..++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~ 67 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRML 67 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEEC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEc
Confidence 3456789999999999999998 688888765 789999887655421 22257889999
Q ss_pred CCCCEEE-EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001363 406 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1092)
Q Consensus 406 pdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~ 483 (1092)
+++++++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc
Confidence 9998885 56778999999999987655 443 66789999999864 3333 3789999999998 77776655
Q ss_pred CCcCeEEEeecccCCccEEEE--EecCCeEEEEEcCCCC----------------ceEEecCCCCceEEEEEccCCCEEE
Q 001363 484 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~----------------~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|+
T Consensus 139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 333444543 35555 6899999999998765 2567888999999999999999999
Q ss_pred EEecCCCCcee-EEEEeCCCCeEEEEEe-e-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--E-----
Q 001363 546 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T----- 615 (1092)
Q Consensus 546 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~----- 615 (1092)
+++. ++. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+.... .
T Consensus 212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 9986 776 9999999999999998 5 66 899999999999999999999999999997653211 1
Q ss_pred -------------EeCC-CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 616 -------------IDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 616 -------------~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
+... ........++|+++++++++++.||.+++|++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 0001 1112246799999999999999999999998764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-27 Score=264.81 Aligned_cols=328 Identities=11% Similarity=0.117 Sum_probs=254.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 535 (1092)
++++++.|+.|++||+.+++.+..+..|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 788999999999999999999999987754 78899865 56665 677799999999999888777776555 89999
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEE
Q 001363 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~ 614 (1092)
+|+|+++++++++. .++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999877653 2567999999999998887754 368999999999988 677789999999999999988
Q ss_pred EEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCC
Q 001363 615 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 693 (1092)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1092)
.+..+. .+..++|+|+++++ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 887653 36899999999887 566778999999987542221100
Q ss_pred CCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcc
Q 001363 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1092)
Q Consensus 694 ~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~ 773 (1092)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCCceeeEEecCCCCCeEEE
Q 001363 774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL 849 (1092)
Q Consensus 774 ~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~~~~~~~~~~~~~~i~~l 849 (1092)
+...+.+++|+|+++++++++ ++.|++||+.+++.+..+..+. .+.++
T Consensus 198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 249 (391)
T 1l0q_A 198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI 249 (391)
T ss_dssp ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence 122355677778877777664 5789999999998888887654 57899
Q ss_pred EEcCCCCCEE-EEEeCCCcEEEEEcCCceeeEeeccccCCeE---EEEEcC------------CC----------CEEEE
Q 001363 850 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLVFSD------------AL----------NILVS 903 (1092)
Q Consensus 850 ~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~---~l~~sp------------dg----------~~l~s 903 (1092)
+|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.| +. ..+..
T Consensus 250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~ 328 (391)
T 1l0q_A 250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD 328 (391)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence 9999 77766 6778899999999999999988877765432 123332 21 34566
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 904 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 904 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
.+.|..+++|++..+.... . .-....|+++|.+.+.
T Consensus 329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence 6778899999998765211 1 1224679999998876
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=278.96 Aligned_cols=285 Identities=13% Similarity=0.143 Sum_probs=232.9
Q ss_pred CcEEEEEECCCCCEEE-EEeCCCEEEEEEccCC-CcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECC
Q 001363 397 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 397 ~~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
.....++++|+...++ +++.||.|+||++... +.......+.+|.+.|.+++|+| +++ +|++|+.||+|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876554 5788999999999654 22233335779999999999999 788 89999999999999999
Q ss_pred CC-------ceeEEEecCCcCeEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEEEEccCCCE
Q 001363 474 TG-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 474 ~~-------~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~dg~~ 543 (1092)
++ +.+..+.+|...|.+++|++ ++ .+|++++.||.|++||+.+.+....+ ..|...|.+++|+|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 88 67889999999999999976 44 59999999999999999999888888 788899999999999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEE-eeccccCCceEEEEEcCCCCEEEEE---eCCCcEEEEECCCCce-EEEEeC
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDA 618 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~ 618 (1092)
|++++. ++.|++||+++++.+..+ .+|. ...+..+.|+|++.++++| +.|+.|++||+.+++. +.....
T Consensus 191 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 191 ICTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp EEEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred EEEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence 999986 667999999999999888 6666 2348999999999999998 7999999999998765 333332
Q ss_pred CCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCce-eeeccc--ccCceeeeeecCCCccccccccCCceeecCCC
Q 001363 619 GGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 694 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1092)
. +...+.+++|+|++++++++ +.||.|++|++.+++. +..+.. +...+.+++|+
T Consensus 265 ~-~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s--------------------- 322 (402)
T 2aq5_A 265 D-TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM--------------------- 322 (402)
T ss_dssp C-CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC---------------------
T ss_pred c-CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe---------------------
Confidence 2 23468999999999999755 4799999999998874 444443 45788888886
Q ss_pred CCCCccceeeccccccceeccc
Q 001363 695 KEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 695 s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|++..+++ .++.+++|++.
T Consensus 323 -p~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 323 -PKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp -CGGGSCGG--GTEEEEEEEEE
T ss_pred -ccccccee--cceeEEEEEcC
Confidence 56666665 45689999976
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=249.30 Aligned_cols=270 Identities=10% Similarity=0.046 Sum_probs=200.8
Q ss_pred EEEEEeCCCeEEEEECCCC---ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 636 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 636 ~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
.++++++ ..|++|+..++ +.+.+...+..+|..+.+.|+..- ++.... |
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~-~---- 107 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN----------------------LVCVAL-G---- 107 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS----------------------CEEEEE-C----
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc----------------------eeeeee-c----
Confidence 4555555 69999999998 788899999999999988764332 211111 0
Q ss_pred eccccccCccccccccCCccccccEEEEEEecC----CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCC
Q 001363 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 788 (1092)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~----g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g 788 (1092)
.-+...|.+++++|+ ++.++.++.+ +.+|++
T Consensus 108 ------------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l------------------------- 142 (356)
T 2w18_A 108 ------------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL------------------------- 142 (356)
T ss_dssp ------------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred ------------------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence 115678999999999 9988887744 555542
Q ss_pred CceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEc-CCceeeEEecCCCCCeEEEEEcC--CCCCEEEEE
Q 001363 789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIG 862 (1092)
Q Consensus 789 ~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~lasg 862 (1092)
++++++.++. |+.|++|++ .+++.+..+..|...++.++|++ .++.+||+|
T Consensus 143 -----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 143 -----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp -----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred -----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 3556666654 788999998 45888888888888888888887 467899999
Q ss_pred eCCCcEEEEEcCCceeeEeecccc---CCeEEEEEcCCCCEE------------EEEeCCCcEEEEEcCCCceeeeeeee
Q 001363 863 MDDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQ 927 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~l------------~s~s~Dg~I~iwd~~~~~~~~~~~~~ 927 (1092)
+.|++|+|||+.+|+++.++.+|. ..+.+++|+|||+++ ++|+.|++|++||..+++......+.
T Consensus 200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~ 279 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC 279 (356)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence 999999999999999999998754 367788999999886 66889999999999987755433333
Q ss_pred cCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEE-EEEEecCCCEEEEEECCCcEEEE
Q 001363 928 TPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPIS-QATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 928 ~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~-~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
.+.++.. .+. ..+.++.++|+ +.|++|+|||+.+++++.. +.+|...+. .++|||||++|++|+.|++|+||
T Consensus 280 ~p~Gh~~---~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 280 LPPGQAG---RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp CCTTCCC---CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEE-ECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred ccCCCcc---eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEE-ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 3445543 233 33444888888 4799999999999999988 557766554 68999999999999999999999
Q ss_pred Ec
Q 001363 1006 EA 1007 (1092)
Q Consensus 1006 d~ 1007 (1092)
|+
T Consensus 354 d~ 355 (356)
T 2w18_A 354 HY 355 (356)
T ss_dssp EE
T ss_pred cC
Confidence 96
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-26 Score=265.60 Aligned_cols=355 Identities=14% Similarity=0.092 Sum_probs=261.0
Q ss_pred CCCcEEEEEECCCCCEEEEEeCC-CEEEEEEccCCCcccceEEEcccccceeEEE---EecCCCcEEEE-----------
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVI----------- 459 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~---~s~d~~~l~l~----------- 459 (1092)
....|..+.++|....++..... ...+++.. .....+..++ |+|+++.++++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR 92 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence 44567778888865444443211 11222221 1223455666 77776642222
Q ss_pred -EEeCCC--cEEEEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-----EecCCC
Q 001363 460 -TCGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG 529 (1092)
Q Consensus 460 -s~~~d~--~i~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~ 529 (1092)
+++.++ .|..||..++ +.+..+..+. .+.+++|++ ++.++++++.++.|++||+.+++... .+..+.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 223344 4444555445 5566666554 455888866 66788888899999999999887766 344677
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 001363 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN 608 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~ 608 (1092)
..+.+++|+++++.+++++. ++.|++||..+++.+..+..+. ..+.+++|+|+++.+++++ .++.|++||+.
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK 242 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence 78999999999999998875 6679999999999998888766 7899999999999886554 89999999999
Q ss_pred CCceEEEEeCCCCCCCCceEEEccCCCEEEEEe--------CCCeEEEEECCCCceeeecccccCceeeeeecCCCcccc
Q 001363 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1092)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1092)
+++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+.+++.....
T Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------------------- 299 (433)
T 3bws_A 243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------------------- 299 (433)
T ss_dssp TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------
T ss_pred CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------
Confidence 999888776543 378999999999999887 3667777766543211100
Q ss_pred ccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001363 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 760 (1092)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~ 760 (1092)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-e-CCeEEEEEcCCceeeEE
Q 001363 761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILT 838 (1092)
Q Consensus 761 w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-s-dg~i~iwd~~~~~~~~~ 838 (1092)
.+...+.+++|+|+++.++++ + ++.|++||+.+++.+..
T Consensus 300 ---------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 300 ---------------------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp ---------------------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ---------------------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 012245567888888755444 3 68899999998888877
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeC---------------CCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEE
Q 001363 839 IMPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 903 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~---------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 903 (1092)
+. +...+.+++|+| ++++|++++. ||.|++||+.+++.+..+.. ...+.+++|+|||++|++
T Consensus 341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEE
Confidence 76 667899999999 8888888876 57999999999999888886 457999999999999998
Q ss_pred EeC-CCcEEEEEcCC
Q 001363 904 SGG-DAQIFVWDVDG 917 (1092)
Q Consensus 904 ~s~-Dg~I~iwd~~~ 917 (1092)
++. |+.|++|+++.
T Consensus 418 ~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 418 SDFLDHQIRVYRRDG 432 (433)
T ss_dssp EETTTTEEEEEEETT
T ss_pred EECCCCeEEEEEecC
Confidence 875 99999999874
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=243.53 Aligned_cols=293 Identities=14% Similarity=0.139 Sum_probs=206.5
Q ss_pred eeEEEEe-cCCCcEEEEEEeCCCcEEEEECCCC---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001363 444 VNDLAFS-APCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1092)
Q Consensus 444 v~~~~~s-~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 519 (1092)
+.++-|- +..+.+.+++++ ...|++|+..++ ++++++.+|..+|..+.+.|+.-+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5555553 445555677777 568999999999 8999999999999999997754332222221
Q ss_pred CceEEecCCCCceEEEEEccC----CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE
Q 001363 520 GARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1092)
Q Consensus 520 ~~~~~~~~~~~~i~~~~~s~d----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1092)
..+...|.+++++|| ++.+++++. .+.+|++.++ +.+.+
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~g-------------------------~lv~s 150 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTKR-------------------------RLVSS 150 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEETTT-------------------------EEEEE
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecCCC-------------------------cEEEe
Confidence 123447889999999 889988753 2666654333 33333
Q ss_pred Ee--CCCcEEEEEC-CCCceEEEEeCCCCCCCCceEEEcc---CCCEEEEEeCCCeEEEEECCCCceeeecccccCceee
Q 001363 596 AG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1092)
Q Consensus 596 ~s--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 669 (1092)
++ .|+.|++|++ .+|+.+..+..+. ..+..++|++ ++.+|++++.|++|+|||+.+++.+..+.++..
T Consensus 151 s~~g~d~~V~~~~~s~dG~~~~s~~~~~--~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~---- 224 (356)
T 2w18_A 151 SGTLSDQQVEVMTFAEDGGGKENQFLMP--PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS---- 224 (356)
T ss_dssp ESSSTTCEEEEEEECTTSCEEEEEEECC--CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----
T ss_pred cccCCCCcEEEEEECCCCceeeeeccCC--CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc----
Confidence 22 4777777777 4466666666554 3578899999 789999999999999999999988877654322
Q ss_pred eeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEE
Q 001363 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1092)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 749 (1092)
+...+.+++|+|+|+.+
T Consensus 225 ---------------------------------------------------------------~v~~v~~vafSpdG~~l 241 (356)
T 2w18_A 225 ---------------------------------------------------------------YQASVCHKAYSEMGLLF 241 (356)
T ss_dssp -----------------------------------------------------------------CCCEEEEEEETTEEE
T ss_pred ---------------------------------------------------------------ceeeeEEEEECCCCCEE
Confidence 12346678899999877
Q ss_pred EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEE
Q 001363 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLY 828 (1092)
Q Consensus 750 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iw 828 (1092)
++++.+.. + ..+++++ |++|++|
T Consensus 242 vs~s~~~~--~------------------------------------------------------w~laSGs~D~tIklW 265 (356)
T 2w18_A 242 IVLSHPCA--K------------------------------------------------------ESESLRSPVFQLIVI 265 (356)
T ss_dssp EEEC--------------------------------------------------------------------CCEEEEEE
T ss_pred EEeccCCC--c------------------------------------------------------ceeeccCCCcEEEEE
Confidence 77664311 0 1355666 7889999
Q ss_pred EcCCceeeEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeE-EEEEcCCCCEEE
Q 001363 829 IVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILV 902 (1092)
Q Consensus 829 d~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~ 902 (1092)
|..+++.+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|+
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La 342 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL 342 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred ECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence 99999887765 356555544444 467999999999999999999999999999988665 589999999999
Q ss_pred EEeCCCcEEEEEc
Q 001363 903 SSGGDAQIFVWDV 915 (1092)
Q Consensus 903 s~s~Dg~I~iwd~ 915 (1092)
+|+.|++|+|||+
T Consensus 343 SGS~D~TIklWd~ 355 (356)
T 2w18_A 343 AGQKDGNIFVYHY 355 (356)
T ss_dssp EECTTSCEEEEEE
T ss_pred EEECCCcEEEecC
Confidence 9999999999996
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=304.07 Aligned_cols=260 Identities=13% Similarity=0.155 Sum_probs=212.3
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
..++.+|.+.|++++|+|+|+ ++++|+.||+|+|||+.++..... ..+.+|.+.|.+++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH 63 (753)
T ss_dssp ------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred eeecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence 467899999999999999998 689999999999999985432211 12778999999999999
Q ss_pred C--CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCC--ceeEE
Q 001363 407 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTG--SRTYS 480 (1092)
Q Consensus 407 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~--~~~~~ 480 (1092)
+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ ++ .+++|+.||.|++||+.++ .....
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence 8 99999999999999999998752 233367789999999999999 88 8999999999999999887 34566
Q ss_pred EecCCcCeEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccC---CC
Q 001363 481 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN---GR 542 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~d---g~ 542 (1092)
+.+|...|.+++|++.. ++.++++|+.||.|++||++.... ...+..|...|.+++|+|+ ++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 78899999999997742 578999999999999999988743 3467788999999999999 89
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++++++. ++.|++||..++... ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus 221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999986 567999999886421 1111112234789999999999999999999999999998643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=276.23 Aligned_cols=256 Identities=16% Similarity=0.250 Sum_probs=214.6
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCC----------CCeeEEeeeeeeecccccceeeEeeecCCC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS----------GQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~----------~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~ 396 (1092)
...+.+|.+.|++++|+|++..++|+|+.||.|+|||+.+ ...+. .+.+|.
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~h~ 181 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL-------------------RLRGHQ 181 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSE-------------------EEECCS
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcE-------------------EecCCC
Confidence 3556789999999999998545899999999999999986 22222 267899
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcc----cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 397 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..|.+++|+|++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||
T Consensus 182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWD 260 (430)
T ss_dssp SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEE
T ss_pred CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEE
Confidence 9999999999998 9999999999999999885432 223457789999999999995444 899999999999999
Q ss_pred CCCC---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCC-EEEE
Q 001363 472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFS 546 (1092)
Q Consensus 472 ~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~-~l~~ 546 (1092)
+.++ +.+..+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ .+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp TTCSCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred CCCCCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 9987 5778888999999999997642 24799999999999999998 456778888999999999999996 5777
Q ss_pred EecCCCCceeEEEEeCCC--------------CeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 001363 547 CGTSKEGESFLVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 610 (1092)
++. ++.|++||+.. .+.+..+.+|. ..|..++|+|+++ .+++++.||.|++|++...
T Consensus 340 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 340 SGT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EET----TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EeC----CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 765 56799999987 35556666666 8899999999999 8899999999999998754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=303.52 Aligned_cols=255 Identities=17% Similarity=0.300 Sum_probs=215.2
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~ 468 (1092)
++.+|.+.|++++|+|+|++|++|+.||.|+|||+.++. ......+.+|.++|++++|+|+ ++ +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 377899999999999999999999999999999998532 2334478899999999999998 77 899999999999
Q ss_pred EEECCCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEcc-----
Q 001363 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA----- 539 (1092)
Q Consensus 469 vwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~----- 539 (1092)
+||+.+++ .+..+.+|...|.+++|++..++.++++|+.||.|++||+.... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77888899999999999876447899999999999999998873 3456677888999999999
Q ss_pred --------CCCEEEEEecCCCCceeEEEEeCCCC----eEEEEEeeccccCCceEEEEEcCC---CCEEEEEeCCCcEEE
Q 001363 540 --------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKI 604 (1092)
Q Consensus 540 --------dg~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~i 604 (1092)
++..+++++. ++.|++||..++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 5899999986 566999999877 5556677776 89999999999 899999999999999
Q ss_pred EECCCCceE---EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 605 WDMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 605 wd~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
||+.++... .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999886421 112222344578999999999999999999999999998653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=268.31 Aligned_cols=300 Identities=12% Similarity=0.040 Sum_probs=229.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceE--EEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
..+.+++|+|++.++++++.++.|++||+.+++...... .+.+|.+.|.+++|+++++ ++++++.|+.|++||+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 456699999988888888888999999999987553211 2347888999999999998 899999999999999999
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC-
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE- 552 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~- 552 (1092)
++.+..+..|...+.+++|++ ++..+ ++++.|+.|++||+++++....+.. ...+.+++|+|+|+++++++....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 999999999999999999965 55666 5555899999999998777666654 446899999999999998874321
Q ss_pred ---CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001363 553 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 553 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
.++.|++||+.+++.+..+. +. ..+..++|+|+++.+ ++++.++.|++||+.+++.+..+... ..+.++
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~ 350 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI 350 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence 36789999999998877663 33 478899999999866 45689999999999999988888643 347899
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccc
Q 001363 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1092)
+|+|+++++++++.+.. ..+..++++++.||
T Consensus 351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg 381 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG 381 (433)
T ss_dssp EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence 99999999988876320 01123344455555
Q ss_pred ccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec-CCeeEEEeec
Q 001363 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP 764 (1092)
Q Consensus 709 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~~w~~~ 764 (1092)
.+++||....+..... .....+.+++|+|+|+.+++++. ++.+++|++.
T Consensus 382 ~v~~~d~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 382 KVYVIDTTTDTVKEFW-------EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTTEEEEEE-------ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCCcEEEEe-------cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 5555554322211111 02345788999999998888775 8999999864
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=262.90 Aligned_cols=299 Identities=13% Similarity=0.135 Sum_probs=215.4
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..+|...|.+++|+|||++||+|+.++ ++||++.+++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 467999999999999999999998776 7899998764332 1 22235888899998884 446788889999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
..+++.+..+. |...|.++++++ + .++++ .|+.|++||+.+. +....+.. +...+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 99999999887 677999999854 2 34443 5889999999887 44444333 445566777 66666522
Q ss_pred CCCceeEEEEeCCCCe----------------EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceE
Q 001363 551 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL 613 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~ 613 (1092)
..++.|++||+.++. .+..+.+|. ..|.+++|+|++++|++|+.|++ |++||+.+++.+
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 236679999999876 266777777 89999999999999999999998 999999999999
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee--eeccc-----ccCceeeeeecCCCccccccccCC
Q 001363 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV--DAAGV-----LSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
..+....+...|.+++|+|++++|++++.|++|++|++...... ..+.. .....++++...... .......
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 309 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV--DKHVRGC 309 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC--CTTCCCC
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc--CCCCCce
Confidence 99973223457999999999999999999999999999865321 11111 001111111000000 0001113
Q ss_pred ceeecCCCCCCCccceeeccccccceecccccc
Q 001363 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~ 719 (1092)
.+++ ++|++.+++++.||.+++|++....
T Consensus 310 ~~a~----~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 310 KIAW----ISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEE----SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEE----eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 3455 6899999999999999999976443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=263.75 Aligned_cols=278 Identities=8% Similarity=0.053 Sum_probs=218.0
Q ss_pred EEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001363 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1092)
Q Consensus 448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 527 (1092)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+...
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4456777 89999999999999999999988886 466777877654 99999999999998643
Q ss_pred CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcC--CCCEEEEEeCCCcEEE
Q 001363 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKI 604 (1092)
Q Consensus 528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~i 604 (1092)
.+.+||..+++.+..+. +|. ..|.+++|+| +++++++++.||+|++
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSA---NEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCS---SCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCC---CCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 27788888888766665 444 7899999999 9999999999999999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee-eecccccCceeeeeecCCCccccccc
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV-DAAGVLSDNLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1092)
||+.+++.......+.. ..+.+++|+|++.++++|+.||.|++||+.+++.. ..+.
T Consensus 154 wd~~~~~~~~~~~~~~~-~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~---------------------- 210 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKSD-VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP---------------------- 210 (343)
T ss_dssp EESSSSCEEEEECCCSS-CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC----------------------
T ss_pred EECCCCcEEEEEecCCC-CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe----------------------
Confidence 99999998766644332 35899999999999999999999999998765221 1000
Q ss_pred cCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001363 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~ 763 (1092)
T Consensus 211 -------------------------------------------------------------------------------- 210 (343)
T 3lrv_A 211 -------------------------------------------------------------------------------- 210 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecC--
Q 001363 764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP-- 841 (1092)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~-- 841 (1092)
. +|...|.+++|+|+|.+|++++++.|++||+.+++.+..+..
T Consensus 211 --------------------------------~---~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~ 255 (343)
T 3lrv_A 211 --------------------------------V---DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYT 255 (343)
T ss_dssp --------------------------------C---CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCB
T ss_pred --------------------------------c---cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccc
Confidence 0 166778888888888888888877899999888776555443
Q ss_pred -CCCCe--EEEEEcCCCCCEEEEEeC-CCcEEEEEcCCceeeEeeccccCCeEEEEEcC---CCCEEEEEeCCCcEEEEE
Q 001363 842 -PSPTA--TSLAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 842 -~~~~i--~~l~~s~~d~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~l~s~s~Dg~I~iwd 914 (1092)
|...+ .+++|+| ++++|++++. |+.|+||++.++...... .++..++|++ +.+.+++++.|+.+.++-
T Consensus 256 ~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 256 IPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp C-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred cccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 33333 4699999 8999999998 999999999766533332 5678889998 889999999999999886
Q ss_pred cCC
Q 001363 915 VDG 917 (1092)
Q Consensus 915 ~~~ 917 (1092)
...
T Consensus 331 ~~~ 333 (343)
T 3lrv_A 331 KTN 333 (343)
T ss_dssp ECS
T ss_pred ecC
Confidence 554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=267.39 Aligned_cols=257 Identities=16% Similarity=0.311 Sum_probs=214.7
Q ss_pred eeEeeecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCC-------CcccceEEEcccccceeEEEEecCCCcEEE
Q 001363 387 FKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISV 458 (1092)
Q Consensus 387 ~~~~~l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l 458 (1092)
+......+|.+.|++++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|
T Consensus 119 ~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l 197 (430)
T 2xyi_A 119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YL 197 (430)
T ss_dssp EEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EE
T ss_pred eEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eE
Confidence 333446679999999999997 789999999999999999862 112334478899999999999999886 69
Q ss_pred EEEeCCCcEEEEECCCCce-------eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCC
Q 001363 459 ITCGDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAP 528 (1092)
Q Consensus 459 ~s~~~d~~i~vwd~~~~~~-------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~ 528 (1092)
++|+.||.|++||+.++.. ...+.+|...|.+++|++. ++.+|++++.||.|++||++.. .....+..+
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 9999999999999988432 4667789999999999774 4579999999999999999987 456677788
Q ss_pred CCceEEEEEccCCC-EEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEE
Q 001363 529 GLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIW 605 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iw 605 (1092)
...|.+++|+|++. .+++++. ++.|++||+++ +..+..+.+|. ..|.+++|+|+++ .+++++.|+.|++|
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred CCCeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence 89999999999998 4667765 67799999997 56778888877 8999999999985 68889999999999
Q ss_pred ECCC--------------CceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC
Q 001363 606 DMNK--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1092)
Q Consensus 606 d~~~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 654 (1092)
|+.. ...+.....+ ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 350 DLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9987 2455555444 45699999999999 9999999999999998753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-27 Score=270.74 Aligned_cols=265 Identities=15% Similarity=0.096 Sum_probs=219.4
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEc--------------------------------------
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------------------------------------- 438 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------- 438 (1092)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999977666 57789999999987221111222
Q ss_pred ----------------ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC--CCceeEEEe--cCCcCeEEEeecccCC
Q 001363 439 ----------------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKEN 498 (1092)
Q Consensus 439 ----------------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~ 498 (1092)
+|.+.|.+++|+|+++. ++++++.|+.|++||+. +++.+..+. .|...|.+++|++ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--D 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--T
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--C
Confidence 34447999999999993 24899999999999999 888888886 5678899999965 6
Q ss_pred ccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCeEEEE-
Q 001363 499 IHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT- 570 (1092)
Q Consensus 499 ~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~- 570 (1092)
+.+|++++.+|.|++|++....... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEEE
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeeee
Confidence 7899999999999999998776543 66678889999999999 999999986 56699999999988877
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----------------------CCCCCCce
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENPR 627 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~ 627 (1092)
+.+|. ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....+..
T Consensus 237 ~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 237 LFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp CCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred ecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 44666 899999999 9999999999999999999999998887632 11235789
Q ss_pred EEEccCCCEEEEEe-CCCeEEEEEC--CCC---ceeeecccccCceeeeeecC
Q 001363 628 ICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNP 674 (1092)
Q Consensus 628 v~~s~~~~~l~~~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~v~~~~~~~ 674 (1092)
++|+|+++++++++ .++.|++|++ ..+ ..+..+..+ ..+.+++++|
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence 99999999999999 8999999999 555 556666666 7888999985
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-28 Score=267.70 Aligned_cols=271 Identities=10% Similarity=0.056 Sum_probs=213.0
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
..+.+|++ ++++|+.||+|++||+.+++.+... . ...|.+++|+|+ +++++.|++
T Consensus 42 ~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------------~--~~~v~~~~~~~~---~~s~s~D~~ 96 (343)
T 3lrv_A 42 KSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTI-------------------T--TPNPRTGGEHPA---IISRGPCNR 96 (343)
T ss_dssp SSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEE-------------------E--EECCCTTCCCCS---EEEECSTTE
T ss_pred hhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEE-------------------e--cCCceeeeeCCc---eEEecCCCe
Confidence 34556776 7999999999999999999877641 1 356778889998 999999999
Q ss_pred EEEEEcc---------CCCcccceEEEcccccceeEEEEec--CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcC
Q 001363 420 VQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP 487 (1092)
Q Consensus 420 i~iwd~~---------~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~ 487 (1092)
|++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++++.|++|++||+++++.+..... |...
T Consensus 97 i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 97 LLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp EEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred EEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 9999766 3332221 1226778999999999 999 899999999999999999998776644 5568
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
|.+++|++ ++.+|++|+.||.|++||+++.... ..+.. |..+|.+++|+|+|.+|++++. + .|++||++++
T Consensus 173 i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~----~-~v~iwd~~~~ 245 (343)
T 3lrv_A 173 YSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD----Q-TVVCFDLRKD 245 (343)
T ss_dssp CCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES----S-BEEEEETTSS
T ss_pred eEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC----C-eEEEEEcCCC
Confidence 99999965 7789999999999999999998887 67777 8899999999999999999983 2 6999999998
Q ss_pred eEEEEEeeccccCCce--EEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc---CCCEEEE
Q 001363 566 AIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAV 639 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~ 639 (1092)
+.+..+..+..+...+ .+++|+|+++++++++. |+.+++|++.+....... ..+..++|++ +...+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 8766655422111333 46999999999999998 999999999765433322 1245677887 8889999
Q ss_pred EeCCCeEEEEECC
Q 001363 640 IANENRIKILETP 652 (1092)
Q Consensus 640 ~~~dg~i~iw~~~ 652 (1092)
++.||.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999887543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=264.42 Aligned_cols=345 Identities=11% Similarity=0.091 Sum_probs=246.4
Q ss_pred eecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeec-CCCCcEEEEEECCCCCEEEEEeCCCE
Q 001363 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 341 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
+|+|++. ++++++.|++|.+||..+++.+.+ +. ++. +..++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 4899986 789999999999999999998765 33 343 889999999999999999999
Q ss_pred EEEEEc--cCCCcccceEEEcccccceeEEEEec----CCCcEEEEEEe-CCCcEEEEECCCCceeEEEecCCcCeEEEe
Q 001363 420 VQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCG-DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 420 i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~----d~~~l~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 492 (1092)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+||..+++++..+..+...+....
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7765544 454 344679999999 999 566665 589999999999999888764322111111
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE--E
Q 001363 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--T 570 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~ 570 (1092)
++ +...+..+.++|++..+++... +++.|.+||..+++.+. .
T Consensus 276 ~~---------------------------------~~~~v~~i~~s~~~~~~~vs~~---~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 276 YH---------------------------------PEPRVAAIIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EE---------------------------------SCCCEEEEEECSSSSEEEEEET---TTTEEEEEECTTSSSCEEEE
T ss_pred cc---------------------------------cCCceEEEEECCCCCEEEEEEC---CCCeEEEEEecCCCcceeEE
Confidence 11 1124667788888777665542 36678888887765433 2
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEE-EccC-CCEEEEEe-CCCeE
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKN-GTLLAVIA-NENRI 646 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i 646 (1092)
+. +. ..+..+.|+|+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|
T Consensus 320 i~-~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 320 IG-AA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp EE-CC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred ec-cC---cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence 22 22 5677899999999887665 68899999999999998887532111112223 4676 55566654 57899
Q ss_pred EEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccc
Q 001363 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1092)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~ 726 (1092)
.+|+..+.. |..
T Consensus 396 ~v~d~~~~~-------~~~------------------------------------------------------------- 407 (543)
T 1nir_A 396 SLIGTDPKN-------HPQ------------------------------------------------------------- 407 (543)
T ss_dssp EEEECCTTT-------CTT-------------------------------------------------------------
T ss_pred EEEEeCCCC-------Cch-------------------------------------------------------------
Confidence 999987520 000
Q ss_pred ccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001363 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~ 806 (1092)
+...+ +.... .|...+.
T Consensus 408 ------~~~~~-----------------------------------------------------v~~l~----~~g~~~~ 424 (543)
T 1nir_A 408 ------YAWKK-----------------------------------------------------VAELQ----GQGGGSL 424 (543)
T ss_dssp ------TBTSE-----------------------------------------------------EEEEE----CSCSCCC
T ss_pred ------hcCeE-----------------------------------------------------EEEEE----cCCCCce
Confidence 00000 00000 1344556
Q ss_pred EEEEecCCCEEEEEe--------CCeEEEEEcCCceee-EEe--------cCCCCCeEEEEEcCCCCCEEEEEe-----C
Q 001363 807 CFALSKNDAYLFSAS--------GGVISLYIVMTFKTI-LTI--------MPPSPTATSLAFNPHDNNVIAIGM-----D 864 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~s~~d~~~lasg~-----~ 864 (1092)
.++++|||++|++++ +++|.+||+.+++.. ..+ ..+...+..++|+| +|+.|+++. .
T Consensus 425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~ 503 (543)
T 1nir_A 425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKND 503 (543)
T ss_dssp CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTS
T ss_pred EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCC
Confidence 778889999888876 468999999998877 443 35667899999999 888888663 4
Q ss_pred CCcEEEEEcCCceeeEeeccc
Q 001363 865 DSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 865 dg~v~iwd~~~~~~~~~l~~h 885 (1092)
|+.|.|||..+++++.+++.+
T Consensus 504 ~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 504 SSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp CCEEEEEETTTTEEEEEECCT
T ss_pred CCeEEEEECCCceEEEeecCC
Confidence 799999999999999998854
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-26 Score=267.17 Aligned_cols=343 Identities=9% Similarity=0.086 Sum_probs=257.2
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCceE
Q 001363 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 613 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~--~~~~~~ 613 (1092)
+++|++..++++.. ++.|.+||..+++++..+.... .+..++|+|+++++++++.|++|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37888887777654 6779999999999999988544 3889999999999999999999999999 888888
Q ss_pred EEEeCCCCCCCCceEEEcc----CCCEEEEEeC-CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCce
Q 001363 614 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 688 (1092)
..+... ..+..++|+| +|+++++++. +++|.+||..+++.+..+..+...+....+.
T Consensus 216 ~~i~~g---~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~--------------- 277 (543)
T 1nir_A 216 AEIKIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH--------------- 277 (543)
T ss_dssp EEEECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE---------------
T ss_pred EEEecC---CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc---------------
Confidence 888743 2468999999 9999999885 8999999999887776554221100000000
Q ss_pred eecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEE-EeecCCeeEEEeecCCC
Q 001363 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHLMWRWPRND 767 (1092)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-~~~~dg~i~~w~~~~~~ 767 (1092)
....+.++.+++++..++ +...++.|.+|++....
T Consensus 278 --------------------------------------------~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 278 --------------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp --------------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred --------------------------------------------cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 123678899999776654 45557899998875431
Q ss_pred cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC----
Q 001363 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP---- 841 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~---- 841 (1092)
. +....+ .+...+..++|+|||+++++++ +++|.+||..+++++..+..
T Consensus 314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 1 110011 1345577899999999887765 68999999999999888764
Q ss_pred CCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEEEe-------C
Q 001363 842 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G 906 (1092)
Q Consensus 842 ~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-------~ 906 (1092)
|.+....+ ++|+++.+++++. .|++|.+||+.+ +++++++.+|.+.+..++|+||+++|++++ .
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 55444443 5774477778776 689999999998 899999999999999999999999999987 2
Q ss_pred CCcEEEEEcCCCcee-eeeeeecCCCCcCCCCCceEEEEccCCCEEEEE------eCCcEEEEEcCCceeeeeec
Q 001363 907 DAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 974 (1092)
Q Consensus 907 Dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~------~d~~i~lwd~~~~~~~~~~~ 974 (1092)
+++|.|||+.+++.. ....+....+.......+..++|+|||+.+.++ .++.|.|||..+++++..+.
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 779999999998754 211111100001112368999999999999874 26899999999999988744
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=270.18 Aligned_cols=276 Identities=7% Similarity=-0.019 Sum_probs=179.7
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
.....|...+....+++++. ++|+|+.|++|+|||+.+++......+ ..+.+|.+.|.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~ 147 (393)
T 4gq1_A 83 YSENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADV 147 (393)
T ss_dssp EECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEE
T ss_pred ccccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEccc
Confidence 44456666666777777776 799999999999999998876543111 23789999999999998
Q ss_pred -------CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 407 -------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 407 -------dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++...
T Consensus 148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~ 223 (393)
T 4gq1_A 148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAE 223 (393)
T ss_dssp ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---
T ss_pred cccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccc
Confidence 89999999999999999998875443 56678999999999999864 79999999999999999998876
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEc-cCCCEEEEEecCCCCceeEE
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~~~~~i~ 558 (1092)
....+.......++.... . ..........+...+.++.|+ +|++.+++++. ++.++
T Consensus 224 ~~~~~~~~~~~~~~s~~~----------~---------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~ 280 (393)
T 4gq1_A 224 ENSQTELVKNPWLLTLNT----------L---------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWL 280 (393)
T ss_dssp -------CSCCCSEEEES----------G---------GGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEE
T ss_pred cccccCCcccceEEeccc----------c---------cceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEE
Confidence 665444333222221111 1 111111223456678888886 79999999876 66799
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEE------------------EEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVV------------------HFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~------------------~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
+||+.++.....+..+. ..+..+ .++| ++.++++|+.||+|++||+.+++....+..
T Consensus 281 vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~ 357 (393)
T 4gq1_A 281 RWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ 357 (393)
T ss_dssp EEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred EEECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence 99999887766665544 222222 2333 233556688999999999999988777665
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
+. ..|.+++|+|||++||+++.+| +.+|.+
T Consensus 358 ~~--~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 358 LG--MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CS--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 53 3699999999999999998766 555554
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-27 Score=265.09 Aligned_cols=322 Identities=14% Similarity=0.087 Sum_probs=202.3
Q ss_pred cCCCceEEEEEcCCCcEEEEecCCCCe-----eEEeeeeeeecccccce-----eeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 343 HPVQHTLLLVGTNVGDTGLWDVNSGQK-----LFIRNFKVWDIGACSML-----FKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 343 spdg~~llasg~~dg~i~iwd~~~~~~-----~~~~~~~~~d~~~~~~~-----~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
+|++..+++.| .++.|.+|+...... ........|+....... ........|...+....+++++.+||
T Consensus 27 ~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 105 (393)
T 4gq1_A 27 SPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA 105 (393)
T ss_dssp SGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred CCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence 56665566666 468899997643211 11111222221111000 00112334555556666677888999
Q ss_pred EEeCCCEEEEEEccCCCcccc--eEEEcccccceeEEEEec--------CCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 413 VAYSKHIVQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~--~~~~~~h~~~v~~~~~s~--------d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+++.|++|+|||..+++.... ...+.+|.+.|++++|+| |++ +|+||+.|++|+|||+.++.++..+.
T Consensus 106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~~~~~~~~~~ 183 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLTDEGPILAGY 183 (393)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECCCCceeeeec
Confidence 999999999999998765332 223679999999999998 787 89999999999999999999888888
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+|..+|.+++|+|. +..+|++++.||+|++||+.+.........+.......+++++.
T Consensus 184 ~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~--------------------- 241 (393)
T 4gq1_A 184 PLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT--------------------- 241 (393)
T ss_dssp ECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES---------------------
T ss_pred CCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc---------------------
Confidence 99999999999764 23589999999999999998876654433322211111111111
Q ss_pred CCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC----------------CCCC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----------------LPEN 625 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v 625 (1092)
..........+|. ..+.++.|. |+++.+++++.|+++++||+..+.....+..+.. ....
T Consensus 242 ~~~~~~~~~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
T 4gq1_A 242 LPLVNTCHSSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL 318 (393)
T ss_dssp GGGC------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCS
T ss_pred ccceeeeeccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc
Confidence 1111111223444 678888886 8999999999999999999988766554432211 1112
Q ss_pred ceEEEcc--CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 626 PRICFNK--NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 626 ~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
....|+| ++.++++|+.||.|++||..++........|...|.+++|+ |||++|++
T Consensus 319 ~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafs----------------------pdG~~LA~ 376 (393)
T 4gq1_A 319 LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWH----------------------QDGSHLAI 376 (393)
T ss_dssp SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEEC----------------------TTSSEEEE
T ss_pred eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEc----------------------CCCCEEEE
Confidence 2344444 44567778889999999999998888888899999999996 78899998
Q ss_pred eccccccceecc
Q 001363 704 VEAENKSEVEKP 715 (1092)
Q Consensus 704 ~~~d~~i~lw~~ 715 (1092)
++.+| +.+|++
T Consensus 377 as~~G-v~lvrL 387 (393)
T 4gq1_A 377 ATEGS-VLLTRL 387 (393)
T ss_dssp EESSE-EEEEEE
T ss_pred EeCCC-eEEEEE
Confidence 87765 545543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=252.30 Aligned_cols=307 Identities=9% Similarity=0.033 Sum_probs=241.7
Q ss_pred CCCceEEeecCCCceEEEEEc----CCC----cEEEEec--CCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~----~dg----~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...|...+|++.|..++++|+ .|| +|+|||+ .+++.+.... +.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHH
Confidence 358899999999987888886 457 8999999 8988764322 556777777777
Q ss_pred ECC--------------CCCEEEEEeCC------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC
Q 001363 404 WSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1092)
Q Consensus 404 ~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~ 463 (1092)
+++ .+..+++++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 764 26677776654 799999998543 33 5678999999999999999 7888887
Q ss_pred CC---cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEE-EEecCCe--EEEEEcCCCCceEEecCCCCceEEEEE
Q 001363 464 DK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1092)
Q Consensus 464 d~---~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1092)
++ .|++||+.+++.. .+..|...+.+++|+| ||+.|+ +++.++. |++||+.+++. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 9999999999875 5667888999999965 667776 6666665 99999987654 556667778999999
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEE
Q 001363 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLT 614 (1092)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~ 614 (1092)
+|||++|++++.. ++...|++||..+++.. .+..+. ..+..++|+|++++|++++.+ ..|++||+.+++..
T Consensus 275 spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~- 348 (415)
T 2hqs_A 275 FPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 348 (415)
T ss_dssp CTTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-
T ss_pred CCCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-
Confidence 9999999988742 23557999999888743 333333 678899999999999987754 58999999998874
Q ss_pred EEeCCCCCCCCceEEEccCCCEEEEEeCCC---eEEEEECCCCceeeecccccCceeeeeecCCCc
Q 001363 615 TIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677 (1092)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 677 (1092)
.+..+ ..+..++|+|+|++|++++.++ .|++|++. +.....+..+...|.+++|+|...
T Consensus 349 ~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 349 VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 34333 2588999999999999988876 79999987 556777888999999999997643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=240.17 Aligned_cols=306 Identities=13% Similarity=0.115 Sum_probs=228.7
Q ss_pred ccceeEEEEecCCCcEEEEEEe----CCC----cEEEEEC--CCCcee--EEEecCCcCeEEEeeccc------------
Q 001363 441 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------ 496 (1092)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~~----~d~----~i~vwd~--~~~~~~--~~~~~~~~~v~~i~~~~~------------ 496 (1092)
...+...+|++.|.. ++++|+ .|| +|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 356788899999876 666776 567 8999999 999987 558899988887776531
Q ss_pred CCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001363 497 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 497 ~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 113466666654 7999999975 44556666778899999999999999988543 2468999999998875 4
Q ss_pred EeeccccCCceEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC-CC--
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN-- 644 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg-- 644 (1092)
+..+. ..+.+++|+|+++.|+ +++.++. |++||+.+++. ..+..+ ...+.+++|+|||++|++++. ++
T Consensus 218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCc
Confidence 55555 6899999999999888 5666654 99999998876 344333 345789999999999988876 34
Q ss_pred eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001363 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~ 724 (1092)
.|++|+..+++... +
T Consensus 292 ~i~~~d~~~~~~~~-l---------------------------------------------------------------- 306 (415)
T 2hqs_A 292 QVYKVNINGGAPQR-I---------------------------------------------------------------- 306 (415)
T ss_dssp EEEEEETTSSCCEE-C----------------------------------------------------------------
T ss_pred EEEEEECCCCCEEE-E----------------------------------------------------------------
Confidence 45555654331100 0
Q ss_pred ccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001363 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 804 (1092)
. .+...
T Consensus 307 ------------------------------------------------------------------------~--~~~~~ 312 (415)
T 2hqs_A 307 ------------------------------------------------------------------------T--WEGSQ 312 (415)
T ss_dssp ------------------------------------------------------------------------C--CSSSE
T ss_pred ------------------------------------------------------------------------e--cCCCc
Confidence 0 02234
Q ss_pred eeEEEEecCCCEEEEEe-C---CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---cEEEEEcCCce
Q 001363 805 VPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSE 877 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~ 877 (1092)
+.+++|+|||++|++++ + ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. +.
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~ 388 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GR 388 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SC
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CC
Confidence 55677788888777765 2 47999999988763 455554 899999999 899999888877 79999987 56
Q ss_pred eeEeeccccCCeEEEEEcCCCC
Q 001363 878 VISKLEGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 878 ~~~~l~~h~~~V~~l~~spdg~ 899 (1092)
....+.+|.+.|.+++|+|.-+
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CEEECCCSSSEEEEEEECCCCC
T ss_pred cEEEeeCCCCCCcCCccccccc
Confidence 6788899999999999999653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=258.18 Aligned_cols=303 Identities=14% Similarity=0.081 Sum_probs=213.5
Q ss_pred CCCceEEeecCCCceEEEEEcC-CC-----cEEEEecCCCCeeEEeeeeeeecccc-----cceeeEeeecCCCCcEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWDIGAC-----SMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~-dg-----~i~iwd~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~l~~h~~~V~~l 402 (1092)
...|.+++|||||++ |++++. |+ +|++||+.+++........-...... ........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 347999999999994 677766 87 89999999998665321100000000 0000000000000347899
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCC--cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 899999999872 232 3567888899999999999 677776 56999999999887655
Q ss_pred EecCCcC----------------eEEEeecccCCccEEEEEecCC---------------------------------eE
Q 001363 481 FEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------KI 511 (1092)
Q Consensus 481 ~~~~~~~----------------v~~i~~~~~~~~~~l~s~~~dg---------------------------------~i 511 (1092)
...+... +.+++| ++||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 5444432 366777 45778899888765 78
Q ss_pred EEEEcCC-CCceEEec--CCCCceEEEEEccCCCEEEEEec-CCCCceeEEEEeCCCCeEEEEEeeccccCC---ceEEE
Q 001363 512 KAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVV 584 (1092)
Q Consensus 512 ~vwd~~~-~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~ 584 (1092)
.+||+.+ ++...... .+...+..++| |||++|++... ....+..|++||..+++....+..+. .. .+..+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~ 342 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSL 342 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCC
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCce
Confidence 8899987 76554433 35567899999 99999997764 22346789999999999887776654 12 34678
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEeCCCCCCCCceE-EEccCCCEEEEEeC-CC--eEEEEECC
Q 001363 585 HFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP 652 (1092)
Q Consensus 585 ~~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iw~~~ 652 (1092)
+|+|||+.+++++.+|.+++|.+. ++. ...+..+ ...+..+ +|+|+|+.++..+. ++ .+++|++.
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 999999988889999988888765 344 5555433 2346666 59999997765544 44 78888865
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-23 Score=254.69 Aligned_cols=241 Identities=9% Similarity=0.067 Sum_probs=172.4
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC----------------eEEEEEcCCCCCEEEEEeC
Q 001363 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT----------------ATSLAFNPHDNNVIAIGMD 864 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~----------------i~~l~~s~~d~~~lasg~~ 864 (1092)
+...+.+++|||||++|++++++.|++||+.+++.......+... +.+++||| |+++|++++.
T Consensus 150 ~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~ 228 (741)
T 2ecf_A 150 GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARI 228 (741)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEE
T ss_pred CCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEE
Confidence 455678889999999999988889999999888776554444332 47899999 8999999887
Q ss_pred CC---------------------------------cEEEEEcCC-ceeeEeec--cccCCeEEEEEcCCCCEEEEEeC--
Q 001363 865 DS---------------------------------TILIYNARS-SEVISKLE--GHSKRVTGLVFSDALNILVSSGG-- 906 (1092)
Q Consensus 865 dg---------------------------------~v~iwd~~~-~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~-- 906 (1092)
|+ .|++||+.+ ++...... .|...+..++| |||++|++++.
T Consensus 229 d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~ 307 (741)
T 2ecf_A 229 DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR 307 (741)
T ss_dssp ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET
T ss_pred cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc
Confidence 65 889999998 87655443 47888999999 99999997764
Q ss_pred ---CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcC-CceeeeeeccCCCCCE
Q 001363 907 ---DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVPI 981 (1092)
Q Consensus 907 ---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~-~~~~~~~~~~~h~~~v 981 (1092)
+..|++||+.+++.... +....... -..+..++|+|||++++++ .++.+.||.+. ++. ... +..|...|
T Consensus 308 ~~~~~~i~~~d~~~g~~~~~--~~~~~~~~--~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~-l~~~~~~v 381 (741)
T 2ecf_A 308 DQKKLDLVEVTLASNQQRVL--AHETSPTW--VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA-LTHGNWSV 381 (741)
T ss_dssp TSSEEEEEEEETTTCCEEEE--EEEECSSC--CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE-SCCSSSCE
T ss_pred cCCeEEEEEEECCCCceEEE--EEcCCCCc--CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee-eeecceEE
Confidence 56799999998764432 22111100 0124678999999977774 56777777765 344 443 55677788
Q ss_pred EEE-EEecCCCEEEEEE-CCC--cEEEEEcCC-CceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCC----
Q 001363 982 SQA-TFSCDCRMVFTSF-VDG--TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN---- 1052 (1092)
Q Consensus 982 ~~l-~fs~dg~~l~t~~-~Dg--~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d---- 1052 (1092)
..+ .|||||+.|++.+ .++ .++||++.. +.....+.. ...+ ..++|+| |+.+|++...+
T Consensus 382 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~---------~~~~--~~~~~sp-dg~~l~~~~~~~~~p 449 (741)
T 2ecf_A 382 DELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK---------APGM--HSASFAR-NASVYVDSWSNNSTP 449 (741)
T ss_dssp EEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC---------SCSE--EEEEECT-TSSEEEEEEEETTEE
T ss_pred EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc---------CCCc--eEEEECC-CCCEEEEEecCCCCC
Confidence 887 5999999876554 444 899999875 544444431 1123 3688999 57777766554
Q ss_pred CcEEEEecC
Q 001363 1053 GEVYVIEPN 1061 (1092)
Q Consensus 1053 g~v~~w~~~ 1061 (1092)
+.+++|+..
T Consensus 450 ~~~~l~~~~ 458 (741)
T 2ecf_A 450 PQIELFRAN 458 (741)
T ss_dssp EEEEEEETT
T ss_pred CeEEEEEcC
Confidence 468889874
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=256.90 Aligned_cols=310 Identities=9% Similarity=0.088 Sum_probs=222.3
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC---cEEEEEECCCCCEEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG 412 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~la 412 (1092)
.+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 578899999998 5666 6889999999999986643 445554 499999999999999
Q ss_pred EEeCC---------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001363 413 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 413 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
+++.+ +.+.+||+.+++. ..+....+|...+..++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99764 7889999999875 22212334555689999999999 5777664 7999999999988776655
Q ss_pred CCcCe------------------EEEeecccCCccEEEEEecCC----------------------------------eE
Q 001363 484 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI 511 (1092)
Q Consensus 484 ~~~~v------------------~~i~~~~~~~~~~l~s~~~dg----------------------------------~i 511 (1092)
+...+ .+++| ++||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 67778 45778898887653 79
Q ss_pred EEEEcCCCCceEEecCC------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce----
Q 001363 512 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV---- 581 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---- 581 (1092)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||..+++....+..+. ...+
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~ 308 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN 308 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence 99999887765555543 45788999999999987776554456789999999998877665543 1333
Q ss_pred EEEEEcCCCCEEEE--EeCCC------cEEEEE-CCCCce--EEEEeCCCCCCCCce-EEEccCCCEEEEEeCC---CeE
Q 001363 582 SVVHFDTAKDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI 646 (1092)
Q Consensus 582 ~~~~~~~~~~~l~~--~s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i 646 (1092)
..++|+|||+.|+. +..++ .|++|| ..++.. ...+... . ..+.. ++|+|||+.|+..+.+ +.+
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence 37899999998775 44666 577777 344441 3333321 1 22343 6899999999877665 789
Q ss_pred EEEECCCCc--eeeeccc---ccCceeeeeecCCC
Q 001363 647 KILETPESN--SVDAAGV---LSDNLRKLSVNPIS 676 (1092)
Q Consensus 647 ~iw~~~~~~--~~~~~~~---~~~~v~~~~~~~~~ 676 (1092)
++|++.... ....+.. +...+..++++|++
T Consensus 387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred EEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence 999986432 2333332 34456666666433
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=251.99 Aligned_cols=385 Identities=11% Similarity=0.084 Sum_probs=255.1
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---------Cc
Q 001363 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 601 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~ 601 (1092)
.+.+++|+|||+++++ +. ++.|++||..+++....+..+......+..++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997755 32 5579999999999887777655211248999999999999998764 78
Q ss_pred EEEEECCCCceEEEEeC-CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccc
Q 001363 602 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1092)
Q Consensus 602 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1092)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|+..+++.......+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 88999999887 33332 222234788999999999999987 799999998775544332211110
Q ss_pred ccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeE
Q 001363 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL 759 (1092)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~ 759 (1092)
+..|.. -|-.. ..-...+.+++|||||+.|++++.+ +.+.
T Consensus 158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~ 198 (723)
T 1xfd_A 158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP 198 (723)
T ss_dssp --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence 000000 00000 0011245789999999999888765 4667
Q ss_pred EEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe
Q 001363 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 839 (1092)
Q Consensus 760 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~ 839 (1092)
+|++.... + .+...+..+.|+++|.. ..+..|++||+.+++....+
T Consensus 199 ~~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 199 IMELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp EEEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred eEEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence 77654211 0 02234677888888763 12357999999998876666
Q ss_pred cCC------CCCeEEEEEcCCCCCEEEEEeC----CCcEEEEEcCCceeeEeecc-ccCCeE----EEEEcCCCCEEEE-
Q 001363 840 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRVT----GLVFSDALNILVS- 903 (1092)
Q Consensus 840 ~~~------~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~~~~~l~~-h~~~V~----~l~~spdg~~l~s- 903 (1092)
..+ ...+..++||| |+++|++... +..|++||+.++++...+.. |.+.+. .++|||||+.|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 654 56789999999 8888877653 35899999999987766654 334443 7899999998775
Q ss_pred -EeCCC------cEEEEE-cCCCceeeeeeeecC-CCCcCCCCCceE-EEEccCCCEEEE-EeC---CcEEEEEcCCce-
Q 001363 904 -SGGDA------QIFVWD-VDGWGIQTCRSLQTP-DGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT- 968 (1092)
Q Consensus 904 -~s~Dg------~I~iwd-~~~~~~~~~~~~~~~-~~~~~~~~~v~~-l~~s~dg~~la~-~~d---~~i~lwd~~~~~- 968 (1092)
...++ .|.+|| ..+++.. +.... .+.. .+.. ++|||||+.|+. +.+ +.++||++....
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred EecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 44666 466677 3333200 01111 1222 2444 699999999986 444 679999986432
Q ss_pred -eeeeeccC--CCCCEEEEEEecCCCEEEEEECC-C--cEEEEEcCCCceEEee
Q 001363 969 -CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 969 -~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~D-g--~i~vwd~~~~~~~~~~ 1016 (1092)
....+... |...+..++|||||++|+..... + ...+++..++..+..+
T Consensus 397 ~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 397 FNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp CCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 23322222 67778999999999988865432 2 3455676666554433
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-21 Score=214.72 Aligned_cols=280 Identities=10% Similarity=0.065 Sum_probs=206.7
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC-CC
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH 418 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-d~ 418 (1092)
..|.+++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777887899999999999999999987754 22345566 9999999998777765 88
Q ss_pred EEEEEEccCCCc-ccceEEEcccccceeEEEEecCCCcEEEEEEeCC-C--cEEEEECCCCceeEEEecCCcCeEEEeec
Q 001363 419 IVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 419 ~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 494 (1092)
.|.+||+.+++. .. .+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+. ...+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEEC
Confidence 999999999875 33 4555666665599999999 56655544 3 89999999999988876544 45788886
Q ss_pred ccCCcc-EEEEEecCCe-EEEEEcCCCCceE----EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE-
Q 001363 495 AKENIH-FIFSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI- 567 (1092)
Q Consensus 495 ~~~~~~-~l~s~~~dg~-i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~- 567 (1092)
+ +++ ++++...++. |.+|+++...... ...........++|+|||++++++.. .++.|.+||+.+++.
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 5 555 4455566688 9999998655432 22233456789999999998777653 256799999999887
Q ss_pred --EEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--EEEEeCC----CC-CCCCceEEEccCCCEE
Q 001363 568 --KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLL 637 (1092)
Q Consensus 568 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l 637 (1092)
+..+... ..+..++|+|+++++++++ .++.|.+||..+++. +..+... .. ......++|+|+|++|
T Consensus 212 ~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 287 (331)
T 3u4y_A 212 TLLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL 287 (331)
T ss_dssp EEEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE
T ss_pred ceeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEE
Confidence 6666543 4678899999999887665 578899999999887 4444322 11 1112458999999988
Q ss_pred EEEeC-CCeEEEEECCCC
Q 001363 638 AVIAN-ENRIKILETPES 654 (1092)
Q Consensus 638 ~~~~~-dg~i~iw~~~~~ 654 (1092)
++++. ++.|.+|++...
T Consensus 288 ~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 288 FISANISRELKVFTISGK 305 (331)
T ss_dssp EEEETTTTEEEEEETTSC
T ss_pred EEecCCCCcEEEEEecCC
Confidence 76665 579999999865
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-21 Score=235.60 Aligned_cols=238 Identities=9% Similarity=-0.002 Sum_probs=166.0
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc-cceEEEcccc-----------------cceeEEEEecCCCcEEEEE
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT 460 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~~~~s~d~~~l~l~s 460 (1092)
+..+.|+ |+.+++++.++ | +||+.+|+.+ .. +..|. ..|.+++|||| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457788 66777777888 8 9999998763 32 22332 46999999999 5 3443
Q ss_pred EeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-----CCceEEecCCCCc----
Q 001363 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG---- 531 (1092)
Q Consensus 461 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~---- 531 (1092)
+. ++.|++||+.+++... +..+...+.+++|+| ||+.|+++ .++.|++||+.+ ++...........
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 33 5999999999887654 445677788888854 77888884 789999999988 6655443333332
Q ss_pred ----------eEEEEEccCCCEEEEEecC-----------------------------CCCceeEEEEeCCCCeEEEEEe
Q 001363 532 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 532 ----------i~~~~~s~dg~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
+.+++|+|||++|++++.+ ...+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 4789999999999988732 1245789999999988765443
Q ss_pred eccccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEe-CCC--CCCCCceEEEcc--CCCEEEEEeC
Q 001363 573 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AGG--GLPENPRICFNK--NGTLLAVIAN 642 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~v~~s~--~~~~l~~~~~ 642 (1092)
... +...+..++|+||++++++++.++ .|++||+.+++....+. ... ....+..++|+| ||++++++..
T Consensus 253 ~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GEP-KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CSC-TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CCC-CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 211 236789999999999999987665 89999999984333332 111 111246788999 8888888877
Q ss_pred CCeEEEEECC
Q 001363 643 ENRIKILETP 652 (1092)
Q Consensus 643 dg~i~iw~~~ 652 (1092)
++.+++|.+.
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 7777777654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=239.48 Aligned_cols=243 Identities=11% Similarity=0.087 Sum_probs=170.5
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCC-----ceeeEEecCCCCC--------------eEEEEEcCCCCCEEEEEe-
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPT--------------ATSLAFNPHDNNVIAIGM- 863 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-----~~~~~~~~~~~~~--------------i~~l~~s~~d~~~lasg~- 863 (1092)
.+.+++|||||++|+++.++.|++||+.+ ++.......+... +.+++||| |+++|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 34556788888888877778888888877 6655444433332 48999999 899999987
Q ss_pred --------------------------------CCCcEEEEEcCCceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCC-
Q 001363 864 --------------------------------DDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA- 908 (1092)
Q Consensus 864 --------------------------------~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg- 908 (1092)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.++
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 44689999999988655442 4777899999999999999988776
Q ss_pred ----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEcc--CCCEEEEE-eCCcEEEEEcC-CceeeeeeccCCCCC
Q 001363 909 ----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVP 980 (1092)
Q Consensus 909 ----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~la~~-~d~~i~lwd~~-~~~~~~~~~~~h~~~ 980 (1092)
.|++||+.+++.............. ..+..++|+| ||++++++ .++.++||++. ++..+.. +..|...
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~---~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-l~~~~~~ 356 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHYV---EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-VTKGEWE 356 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSCC---CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE-CCCSSSC
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCeE---CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe-cCCCCeE
Confidence 8999999987322211111111111 1246789999 99988875 56788888876 5555555 4566777
Q ss_pred EEE-EEEecCCCEEEEEECC-C----cEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCC--
Q 001363 981 ISQ-ATFSCDCRMVFTSFVD-G----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-- 1052 (1092)
Q Consensus 981 v~~-l~fs~dg~~l~t~~~D-g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-- 1052 (1092)
+.. ++|+|||+.|++++.+ + .|..||+.++... .+. +...+ .+++|+| |+.++++++.+
T Consensus 357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---------~~~~~--~~~~~sp-dg~~l~~~~~~~~ 423 (706)
T 2z3z_A 357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT---------PESGM--HRTQLSP-DGSAIIDIFQSPT 423 (706)
T ss_dssp EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC---------CSSSE--EEEEECT-TSSEEEEEEECSS
T ss_pred EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc---------CCCce--EEEEECC-CCCEEEEEecCCC
Confidence 876 7999999988766654 3 5777777776532 222 12223 3688999 57877776554
Q ss_pred --CcEEEEecCCCC
Q 001363 1053 --GEVYVIEPNEPG 1064 (1092)
Q Consensus 1053 --g~v~~w~~~~~~ 1064 (1092)
+.|++||+....
T Consensus 424 ~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 424 VPRKVTVTNIGKGS 437 (706)
T ss_dssp CSCEEEEEESSSCE
T ss_pred CCcEEEEEECCCCe
Confidence 469999986543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8e-21 Score=212.44 Aligned_cols=274 Identities=11% Similarity=0.085 Sum_probs=213.0
Q ss_pred CCceEEeecCCCceEEEEEcC------CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 335 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
..+..++|+|+|++++++... ++.|.+||..+++.+.... ....+..++|+|||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg 100 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT 100 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence 478899999999865555433 6789999999998776421 22347789999999
Q ss_pred CEEEEE-eCCCEEEEEEccCCCcccceEEEccccc---------ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 409 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 409 ~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+|+.+++...+.++.|.+||..+++.+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 976655 457899999999987654 3333322 278899999999522222246889999999999999
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC----CCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
..+..+...+..++|+ ++++++++++.++.|.+||..+.+....+.. +...+..++|+|+|++++++.. .+
T Consensus 178 ~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~ 252 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA 252 (353)
T ss_dssp EEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred EEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence 8887666667888885 4678899999999999999998877665554 3446788999999998887763 25
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
+.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|+|+
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d 324 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD 324 (353)
T ss_dssp SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence 679999999999888877533 25689999999777665 68999999999999988887653 3689999999
Q ss_pred CCEEEEEeCCC
Q 001363 634 GTLLAVIANEN 644 (1092)
Q Consensus 634 ~~~l~~~~~dg 644 (1092)
|++++++..++
T Consensus 325 g~~l~v~~~~~ 335 (353)
T 3vgz_A 325 GKTLYVSVKQK 335 (353)
T ss_dssp SCEEEEEEECC
T ss_pred CCEEEEEEccc
Confidence 99888776653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-20 Score=207.61 Aligned_cols=277 Identities=14% Similarity=0.152 Sum_probs=193.6
Q ss_pred CceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC-CEEEEE
Q 001363 346 QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY 423 (1092)
Q Consensus 346 g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d-~~i~iw 423 (1092)
+++++++++.|+.|.+||+.. ++..... ...|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 345677778899999999963 4322111 22367789999999999999998876 899999
Q ss_pred Ecc--CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC---CCceeEEEecCCcCeEEEeecccCC
Q 001363 424 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKEN 498 (1092)
Q Consensus 424 d~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~ 498 (1092)
++. +++. .....+..+. .+.+++|+|+++. +++++..++.|.+||+. +++.+..+..+ ..+.+++|++ +
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~--d 139 (343)
T 1ri6_A 66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP--D 139 (343)
T ss_dssp EECTTTCCE-EEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT--T
T ss_pred EecCCCCce-eeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC--C
Confidence 998 5442 2222344333 7899999999994 33444558899999994 34455555443 4577788854 6
Q ss_pred ccEEEEEe-cCCeEEEEEcCC-CCceE----EecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeE--
Q 001363 499 IHFIFSIS-VDGKIKAWLYDS-LGARV----DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI-- 567 (1092)
Q Consensus 499 ~~~l~s~~-~dg~i~vwd~~~-~~~~~----~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~-- 567 (1092)
++++++++ .++.|.+||+.. +.... .... ....+..++|+|+|+++++++. .++.|.+|+.. +++.
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 67777777 899999999987 43321 2222 3447888999999998877652 25679999995 3433
Q ss_pred EEEEeecc---ccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECC--CC--ceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001363 568 KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--KV--QLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 568 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
...+.... .....+..++|+|++++++++ ..++.|.+||+. ++ +.+..+..+. .+..++|+|+|++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22222111 012356789999999988755 478999999998 33 3444454432 2789999999999888
Q ss_pred Ee-CCCeEEEEECC
Q 001363 640 IA-NENRIKILETP 652 (1092)
Q Consensus 640 ~~-~dg~i~iw~~~ 652 (1092)
++ .++.+.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 88 57999999554
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-20 Score=207.26 Aligned_cols=205 Identities=10% Similarity=0.161 Sum_probs=144.2
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEc---CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcCC-c
Q 001363 804 AVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-S 876 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-~ 876 (1092)
.+..++|+|+|+++++++ ++.|.+||+ .+.+.+..+..+ ..+.+++|+| ++++|++++ .++.|++||+.+ +
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCC
Confidence 456788888888776665 577999998 444555555533 4688999999 888777777 899999999987 6
Q ss_pred eeeE----eecc-ccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEccCC
Q 001363 877 EVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 877 ~~~~----~l~~-h~~~V~~l~~spdg~~l~s~s-~Dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
+... .+.. ....+..++|+|++++|+.++ .++.|.+|++.. ++......+............+..++|+|||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 5432 2232 345788999999999776554 789999999954 4433222333222211111246789999999
Q ss_pred CEEEE-E-eCCcEEEEEcC--Cc--eeeeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEc--CCCce
Q 001363 949 TRFLL-V-HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNLEV 1012 (1092)
Q Consensus 949 ~~la~-~-~d~~i~lwd~~--~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~--~~~~~ 1012 (1092)
++|++ . .++.|.+||+. ++ +.+.. ...+. .+..++|+|||++|++++ .++.|.+|++ .+|++
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGF-QPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEE-EECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeee-ecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 98886 3 57899999998 33 33333 22233 388999999999998888 5799999955 46644
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-20 Score=205.16 Aligned_cols=278 Identities=13% Similarity=0.096 Sum_probs=204.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE-EeCCCeEEEEECCCCceeeecccccCceee
Q 001363 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRK 669 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 669 (1092)
+++++++.++.|++||..+++.+..+........+..++|+|+|+++++ +..++.|.+||..+++....+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----
Confidence 4688899999999999999999888875432113678999999987654 45578999999887644332210000
Q ss_pred eeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEE
Q 001363 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1092)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 749 (1092)
+
T Consensus 78 ----------------------------------------------------------------------------~--- 78 (337)
T 1pby_B 78 ----------------------------------------------------------------------------E--- 78 (337)
T ss_dssp ----------------------------------------------------------------------------T---
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE---------
Q 001363 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--------- 820 (1092)
Q Consensus 750 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~--------- 820 (1092)
.+...+.+++|+|||++++++
T Consensus 79 --------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 79 --------------------------------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELT 108 (337)
T ss_dssp --------------------------------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred --------------------------------------------------cccccccceEECCCCCEEEEEecccccccc
Confidence 000012234555555555554
Q ss_pred ----eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc--CCeEEEEE
Q 001363 821 ----SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS--KRVTGLVF 894 (1092)
Q Consensus 821 ----sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~ 894 (1092)
.++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+. .+ +.|
T Consensus 109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~ 181 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE---TYA 181 (337)
T ss_dssp CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT---TBC
T ss_pred cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC---cee
Confidence 358899999999988877764 45678899999 88888877 6899999999999887776544 33 378
Q ss_pred cCCCCEEEEEeCCC------------------------cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCE
Q 001363 895 SDALNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 895 spdg~~l~s~s~Dg------------------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
+||++.++..+.++ .|.+||+.+++... ..... +. ..+.+++|+|||++
T Consensus 182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~---~~---~~~~~~~~s~dg~~ 254 (337)
T 1pby_B 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRI---MD---VFYFSTAVNPAKTR 254 (337)
T ss_dssp CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEE---CS---SCEEEEEECTTSSE
T ss_pred CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCC---CC---CceeeEEECCCCCE
Confidence 99998776554332 46899999877541 11211 11 24778999999999
Q ss_pred EEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 951 FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 951 la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|.+||+.+++.+..+..
T Consensus 255 l~~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 255 AFGA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEe-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9888 79999999999988776443 34678999999999999999999999999999999887763
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-20 Score=205.57 Aligned_cols=279 Identities=10% Similarity=0.048 Sum_probs=207.8
Q ss_pred EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC-cEEEEEECCCCCEEEE-EeCCCEEEEEEcc
Q 001363 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGV-AYSKHIVQLYAYH 426 (1092)
Q Consensus 349 llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~-~V~~l~~spdg~~las-~~~d~~i~iwd~~ 426 (1092)
++++++.+++|.+||+.+++.+.... .++.. .+..++|+|||+++++ ++.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 68889999999999999988765411 12222 4788999999987755 4567899999999
Q ss_pred CCCcccceEEEcc---cccceeEEEEecCCCcEEEEEEe------------CCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 427 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 427 ~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
+++.+... .... |...+.+++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+..+
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 98755422 1111 233678999999999 455554 579999999999998887764 4457778
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc-----------------
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE----------------- 554 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~----------------- 554 (1092)
+|++ ++++|+++ ++.|.+||+.+.+....+..... ...+.|+|||+.++..+.... .
T Consensus 141 ~~s~--dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 141 AWAR--DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSG-VMATPFYTARKDIDPADP 214 (337)
T ss_dssp EECT--TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTT-EEEEEEEEEBTTSCTTSG
T ss_pred EECC--CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCC-ceeeeeeccccccccccc
Confidence 8854 66777777 68999999998876665554331 112378999987765543211 1
Q ss_pred ----eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 555 ----SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 555 ----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
..|.+||..+++.. .+.... +...+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|
T Consensus 215 ~~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 287 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNV 287 (337)
T ss_dssp GGEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEE
T ss_pred cccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEE
Confidence 14799999998875 322211 22568889999999999888 7999999999999888887543 4689999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 001363 631 NKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
+|+|+++++++.++.|.+||+.+++.+..+..
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 99999999999999999999999887766553
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=201.20 Aligned_cols=284 Identities=11% Similarity=0.038 Sum_probs=195.7
Q ss_pred EEecCCcE-EEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEE
Q 001363 741 TYNNGGQA-IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 819 (1092)
Q Consensus 741 ~~s~~g~~-l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~ 819 (1092)
.|.+++.. +++...++.|.+|+... ++....... +...+ .++|+|||+++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~----~~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQITL----GYDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEEC----CCCEE-EEEECSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEEc----cCCcc-eEEEcCCCCEEEE
Confidence 35555555 55666678888887543 332333222 34445 9999999997777
Q ss_pred Ee--CCeEEEEEcCCcee-eEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---cEEEEEcCCceeeEeeccccCCeEEEE
Q 001363 820 AS--GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEVISKLEGHSKRVTGLV 893 (1092)
Q Consensus 820 ~s--dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~ 893 (1092)
++ ++.|.+||..+++. ...+..+.....+++|+| ++++|+++..++ .|.+||+.+++.+..+..+ ....+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence 65 57999999999987 677766666665699999 899888655553 8999999999988887754 4578999
Q ss_pred EcCCCCEEEEE-eCCCc-EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eCCcEEEEEcCCcee
Q 001363 894 FSDALNILVSS-GGDAQ-IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC 969 (1092)
Q Consensus 894 ~spdg~~l~s~-s~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~ 969 (1092)
|+|||++|+++ ..++. |.+|++................. ..+..++|+|||++++++ .++.|.+||+.+++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 99999865544 55688 99999986432211111111111 247899999999977663 468899999998887
Q ss_pred ---eeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEcCCCce--EEeeccccccCCCCcccccc-ceEEEECCCC
Q 001363 970 ---LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEV--QCRILSTAYLRPTTSCLHVY-PHAIAAHPLK 1042 (1092)
Q Consensus 970 ---~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~-~~~~~~~p~d 1042 (1092)
+..+. +...+..++|+|||++|++++ .++.|.+||+.+++. +..+....... ..... ...++|+| |
T Consensus 211 ~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~sp-d 283 (331)
T 3u4y_A 211 ITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID----PRPLFGANQMALNK-T 283 (331)
T ss_dssp CEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC----CGGGTTCCCEEECT-T
T ss_pred cceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC----CCCcccccceEECC-C
Confidence 65533 346778899999999877665 578899999999987 33332110011 11111 13478999 4
Q ss_pred CCEEEEEe-CCCcEEEEecCCCC
Q 001363 1043 PTQFAVGL-TNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1043 ~~~l~~~~-~dg~v~~w~~~~~~ 1064 (1092)
+.+|++++ .++.|.+||+....
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEecCCCCcEEEEEecCCc
Confidence 67665554 56799999996544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-19 Score=199.83 Aligned_cols=249 Identities=13% Similarity=0.125 Sum_probs=196.0
Q ss_pred CCcEEEEEECCCCCEEEEEeC-------CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001363 396 GVSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~-------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
...+..++|+|||++|++++. ++.|.+||..+++.+.. +. ....+..++|+|+|+. +++++..++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence 356889999999999988874 56899999999876553 32 2345788999999985 456667789999
Q ss_pred EEECCCCceeEEEecCCcC---------eEEEeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001363 469 VWDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~---------v~~i~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1092)
+||..+++.+..+..+... +..+++++ ++.++++++ .++.|.+||..+.+....+......+..++|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 9999999998888765432 57788855 556666655 4789999999988887777756666788999
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-cCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEE
Q 001363 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~ 615 (1092)
+|+|++++++.. ++.|.+||..+++.+..+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..
T Consensus 193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999998864 56799999999998887765221 2356788999999998877664 59999999999999888
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeee
Q 001363 616 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDA 659 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~ 659 (1092)
+.... ...++|+|+|++++++. .++.|.+||..+++.+..
T Consensus 269 ~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 269 VAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp EECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 87543 25799999999766666 689999999987755443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=204.99 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=187.6
Q ss_pred EEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccC-CCc
Q 001363 352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD 430 (1092)
Q Consensus 352 sg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~-~~~ 430 (1092)
.++.|++|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44678999999999887553 345788999999999999999986 77899999998 764
Q ss_pred ccceEEEccc-ccceeEEEEecCCCcEEEEEEe--CCCcEEEE--ECCCCceeEEEecCCcCeEEEeecccCCccEEE-E
Q 001363 431 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S 504 (1092)
Q Consensus 431 ~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~-s 504 (1092)
.. ...+| ...+.+++|+||++ .+++++ .++...|| +..+++ ...+..+. .+..++|++ +++.|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEE
Confidence 43 23344 46789999999999 677777 33455555 545554 44454343 478888855 666666 7
Q ss_pred EecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceE
Q 001363 505 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS 582 (1092)
Q Consensus 505 ~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~ 582 (1092)
++.++.+++|+++.. .....+..+...+.+++|+|+|++++.++.. ++.+.+|+.. .+.....+..+. ..+.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~ 220 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW 220 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence 889999999997543 3445566667789999999999998877631 2346666654 344455565555 6788
Q ss_pred EEEEcCCCCEEEEEeCC-----------CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 583 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 583 ~~~~~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
.++|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999999888765 569999999887654443222234588899999999999887753
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=232.22 Aligned_cols=377 Identities=12% Similarity=0.039 Sum_probs=244.4
Q ss_pred EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC---------CCcEEE
Q 001363 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 604 (1092)
Q Consensus 534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~i 604 (1092)
.++|+|||++++++ . ++.|++||..+++....+.++......+.+++|+|||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999655543 2 557999999999988777765411124889999999999998876 789999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc-cccCceeeeeecCCCccccccc
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 683 (1092)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.+++...... ++...
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~----------------- 153 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENK----------------- 153 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTT-----------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCC-----------------
Confidence 999998763111111 3478899999999999986 6899999998775443221 00000
Q ss_pred cCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeEEEe
Q 001363 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWR 762 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~~w~ 762 (1092)
+..|..+ .++.- .-.....+++|||||+.|+.++.| +.+.+|.
T Consensus 154 -----------------v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~ 197 (719)
T 1z68_A 154 -----------------IFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIA 197 (719)
T ss_dssp -----------------EEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEE
T ss_pred -----------------eEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEE
Confidence 0000000 00000 001123478999999999988765 5556665
Q ss_pred ecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceee------
Q 001363 763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI------ 836 (1092)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~------ 836 (1092)
+..... .+...+..+.+...|.. .....|++||+.+++..
T Consensus 198 ~~~~~~-------------------------------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 198 YSYYGD-------------------------------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp EEECCS-------------------------------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECC
T ss_pred eeccCC-------------------------------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEcc
Confidence 432100 02223445555444431 01247999999988753
Q ss_pred --EEecCCCCCeEEEEEcCCCCCEEEEEeCCC----cEEEEE----cCCceeeEee----ccccCCeE-----EEEEcCC
Q 001363 837 --LTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDA 897 (1092)
Q Consensus 837 --~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~spd 897 (1092)
..+.+|...+..++||| |++++++....+ .|.+|| +.++++...+ .+|.+.+. .++||||
T Consensus 244 ~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 12335777899999999 788777754332 488999 8888877666 46777777 8999999
Q ss_pred CCEEEE--EeCCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeC-----CcEEEEEcCC-
Q 001363 898 LNILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE- 966 (1092)
Q Consensus 898 g~~l~s--~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d-----~~i~lwd~~~- 966 (1092)
|+.|+. ...+| .|.+||+.+++.. .+. .+. ..+..+.++ +++.|+. +.+ +..++|.+..
T Consensus 323 g~~l~~~~~~~~g~~~l~~~~~~~~~~~---~lt--~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 323 AISYYKIFSDKDGYKHIHYIKDTVENAI---QIT--SGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG 392 (719)
T ss_dssp SSCEEEEEECTTSCEEEEEESSCSTTCE---ECS--CSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred CCeEEEEEEccCCceEEEEEECCCCceE---ecc--cCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence 996654 44555 4667777665421 121 111 146777888 8888777 443 6788888753
Q ss_pred -cee-eeee---ccCCCCCEEEEEEecCCCEEEEE-ECC--CcEEEEEcCCCceEEeec
Q 001363 967 -LTC-LKQW---FPISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 967 -~~~-~~~~---~~~h~~~v~~l~fs~dg~~l~t~-~~D--g~i~vwd~~~~~~~~~~~ 1017 (1092)
+.. ...+ +.+|...+..+.|||||++++.. +.+ ..+.+||+.+++....+.
T Consensus 393 ~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 393 SYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 421 1221 22366778899999999877753 333 468999999887654443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-20 Score=219.47 Aligned_cols=272 Identities=12% Similarity=0.074 Sum_probs=198.0
Q ss_pred CCCceEEeecCCCceEEEEEcC-CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-CcEEEEEECCCCCEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL 411 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~-dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~l 411 (1092)
..+|++++|+|||++ ||+++. ||++.||++.+++... +..|. ..|..++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 447999999999995 566555 9999999997665443 44455 68999999999 777
Q ss_pred EEEeC---CCEEEEEEccC--CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001363 412 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 412 as~~~---d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
++++. +....+|.+.. ..... .+..+. .+...+|+|||+.+++++++.++ +.+||+++++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence 77765 45566666543 22111 232222 34467999999875666666555 4599999987765554333
Q ss_pred CeEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 487 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
.+++|+ +||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||.
T Consensus 153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 666774 478899988877 78999999887655 55667778899999999999995443 33458999999
Q ss_pred CCCeEEEEEeeccccCCceEEEE--------EcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
.+++.. .+.++. ..+..+. |+|||..+++++.++++++|++ ++.... . ...+.+++|+ ++
T Consensus 226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg 293 (582)
T 3o4h_A 226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RG 293 (582)
T ss_dssp TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TT
T ss_pred CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CC
Confidence 999887 666554 4555556 9999988888999999999999 665441 1 1347789999 99
Q ss_pred CEEEEEeCCCe---EEEEECC
Q 001363 635 TLLAVIANENR---IKILETP 652 (1092)
Q Consensus 635 ~~l~~~~~dg~---i~iw~~~ 652 (1092)
+++++++.+.. +.+|+..
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTC
T ss_pred EEEEEEcCCCCCCeEEEEcCC
Confidence 99988887644 5666554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-18 Score=192.98 Aligned_cols=249 Identities=12% Similarity=0.151 Sum_probs=170.2
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCce--eeEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcC
Q 001363 801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR 874 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~ 874 (1092)
+...+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345667899999999444443 3789999998765 4444455677889999999 888888887 78999999996
Q ss_pred C-c--eeeEeecc---------ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeecCCCCcCCCCCceE
Q 001363 875 S-S--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 875 ~-~--~~~~~l~~---------h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1092)
. + +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 3 23333321 12348899999999977777778899999998 444332222222222 24678
Q ss_pred EEEccCCCEEEEE--eCCcEEEEEcCC--ceeeee-eccCC------CCCEEEEEEecCCCEEE-EEECCCcEEEEEcCC
Q 001363 942 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPIS------SVPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1009 (1092)
Q Consensus 942 l~~s~dg~~la~~--~d~~i~lwd~~~--~~~~~~-~~~~h------~~~v~~l~fs~dg~~l~-t~~~Dg~i~vwd~~~ 1009 (1092)
++|+|||++++++ .++.+.+|++.. ++.... ..... ...+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999977774 467899999874 443211 11111 14588999999999874 555689999999973
Q ss_pred C---ceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCC-CcEEEEecCCCCCc
Q 001363 1010 L---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDT 1066 (1092)
Q Consensus 1010 ~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-g~v~~w~~~~~~~~ 1066 (1092)
. ..+..+. .. . -.+..++|+| |+++|++++.+ +.|.+|++....++
T Consensus 272 ~g~~~~~~~~~------~~--~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 272 DGHLTLIQQIS------TE--G--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GGCEEEEEEEE------CS--S--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCcEEEeEEEe------cC--C--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 3 2222222 10 1 2345789999 57877777764 89999977544443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=196.30 Aligned_cols=245 Identities=11% Similarity=0.069 Sum_probs=181.5
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCC-CCcEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNR 401 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~ 401 (1092)
......+..|...|.+++|+|||+ +|++++ ++.|.+||+.+ ++.... ..+| ...|.+
T Consensus 31 ~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~ 89 (297)
T 2ojh_A 31 TRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNND 89 (297)
T ss_dssp TTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSC
T ss_pred CCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccc
Confidence 344456677888999999999999 466665 78999999998 776542 3334 478899
Q ss_pred EEECCCCCEEEEEe--CCCEEEEEEc--cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC-CCc
Q 001363 402 VVWSPDGSLLGVAY--SKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGS 476 (1092)
Q Consensus 402 l~~spdg~~las~~--~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~ 476 (1092)
++|+|||++|++++ .++.+.||.+ .++. .. .+..+. .+.+++|+||++. ++++++.|+.++||++. .+.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence 99999999999998 3344555554 4543 22 333333 4889999999994 34478889999999853 233
Q ss_pred eeEEEecCCcCeEEEeecccCCccEEEEEe-cCCeEEEEEcC-CCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--
Q 001363 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-- 552 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-- 552 (1092)
....+..+...+.+++|++ ++.+|+.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp CEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred cceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 4456677888899999965 667777665 59999999987 45556666667778899999999999998876432
Q ss_pred -----CceeEEEEeCCCCeEEEE--EeeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001363 553 -----GESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1092)
Q Consensus 553 -----~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 600 (1092)
....|++||+.+++.... +.++. ..+..++|+|++++|++++.+.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence 246799999998866443 33555 6788899999999998877543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=226.50 Aligned_cols=279 Identities=14% Similarity=0.078 Sum_probs=197.2
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC---cEEEEEECCCCCEEEEE
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~las~ 414 (1092)
..++|+|||+ +++++ .|++|++||+.+++.... +.+|.. .|.+++|||||++||++
T Consensus 19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence 3789999996 66665 589999999999986643 223332 48899999999999998
Q ss_pred eC---------CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecC
Q 001363 415 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH 484 (1092)
Q Consensus 415 ~~---------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~ 484 (1092)
+. ++.|++||+.+++.+... .+ ...+.+++|||||+ .|+.+. ++.|++||+.+++..+.. .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 76 689999999998652100 12 24688999999999 566665 789999999988765432 233
Q ss_pred CcCe-----------------EEEeecccCCccEEEEEecCC----------------------------------eEEE
Q 001363 485 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA 513 (1092)
Q Consensus 485 ~~~v-----------------~~i~~~~~~~~~~l~s~~~dg----------------------------------~i~v 513 (1092)
...| .+++| ++||++|++++.|. .|++
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 2222 36777 55788999988652 7889
Q ss_pred EEcCCCCce--EE------ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe----CCCCeEEEEE----eecccc
Q 001363 514 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ 577 (1092)
Q Consensus 514 wd~~~~~~~--~~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~ 577 (1092)
||+.++... .. +..+...+..++|+||++.+++..........|++|| ..+++....+ .++.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~-- 306 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT-- 306 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence 999876642 11 2346667899999999887776544334456799999 8888776555 2443
Q ss_pred CCceE-----EEEEcCCCCEEEE--EeCCC--cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----
Q 001363 578 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----- 643 (1092)
Q Consensus 578 ~~~v~-----~~~~~~~~~~l~~--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----- 643 (1092)
..+. .+.|+|+|+.++. ...+| .|.+||+.+++. ..+..+ ...+..+.++ +++.++..+.+
T Consensus 307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 4454 7889999997654 33555 577778877763 334322 2345667777 88887777765
Q ss_pred CeEEEEECCC
Q 001363 644 NRIKILETPE 653 (1092)
Q Consensus 644 g~i~iw~~~~ 653 (1092)
+..++|.+..
T Consensus 382 ~~~~l~~~~~ 391 (719)
T 1z68_A 382 GRRNIYRISI 391 (719)
T ss_dssp TCBEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 7888887654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-19 Score=194.95 Aligned_cols=277 Identities=12% Similarity=0.098 Sum_probs=182.9
Q ss_pred ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec---CCeeEEEeecCCCcCcCcccccccCCccc
Q 001363 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1092)
Q Consensus 707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 783 (1092)
++.+.+|.++..... ...+. ...+...+..++|+|+|+ +++++. ++.+.+|++.....
T Consensus 15 ~~~i~v~~~d~~tg~-~~~~~--~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~--------------- 75 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKT-LTNDG--LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA--------------- 75 (347)
T ss_dssp CCEEEEEEEETTTTE-EEEEE--EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---------------
T ss_pred CCCEEEEEEcCCCCe-EEEee--eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---------------
Confidence 456778877642211 11111 112345667899999999 666654 58999998754321
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcC-C--ceeeEEecCC---------CCCeEEE
Q 001363 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM-T--FKTILTIMPP---------SPTATSL 849 (1092)
Q Consensus 784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~-~--~~~~~~~~~~---------~~~i~~l 849 (1092)
.....+. .+...+..++|+|||++|++++ ++.+.+|++. + .+.+..+... ...+.++
T Consensus 76 -------~~~~~~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (347)
T 3hfq_A 76 -------HKLNTVV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYT 146 (347)
T ss_dssp -------EEEEEEE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred -------EEeeeee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEE
Confidence 0000000 1455678999999999988887 5889999996 2 3333333221 2348899
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEEcC-Cceee--Eeeccc-cCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCC--Cceee
Q 001363 850 AFNPHDNNVIAIGMDDSTILIYNAR-SSEVI--SKLEGH-SKRVTGLVFSDALNILVS-SGGDAQIFVWDVDG--WGIQT 922 (1092)
Q Consensus 850 ~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~spdg~~l~s-~s~Dg~I~iwd~~~--~~~~~ 922 (1092)
+|+| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|++.. ++...
T Consensus 147 ~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 147 DLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 9999 77777777778999999998 55432 222222 236788999999996665 56788999999885 44333
Q ss_pred eeeeecCCCCcCCCCCceEEEEccCCCEEEE-E-eCCcEEEEEcCC-c--eeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001363 923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEE-L--TCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~i~lwd~~~-~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
...+............+..++|+|||++|++ . .++.|.+|++.. + +.+.. ...+...+..++|+|||++|++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ-ISTEGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE-EECSSSCCCEEEECTTSSEEEEEE
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE-EecCCCCcCeEEECCCCCEEEEEE
Confidence 2233332221111124788999999998865 3 478999999973 2 33333 334566788999999999998887
Q ss_pred CC-CcEEEE--EcCCCceE
Q 001363 998 VD-GTLSIH--EASNLEVQ 1013 (1092)
Q Consensus 998 ~D-g~i~vw--d~~~~~~~ 1013 (1092)
.+ +.|.+| |..+|++.
T Consensus 305 ~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 305 QNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TTTTEEEEEEECTTTCCEE
T ss_pred cCCCcEEEEEEeCCCCeEE
Confidence 65 899999 55567665
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-19 Score=199.86 Aligned_cols=308 Identities=10% Similarity=0.016 Sum_probs=202.7
Q ss_pred cccCCCcceeeecccCCCCceE-----EeecCCCceEEEEEcCCC--cEEEEecCCCCeeEEeeeeeeecccccceeeEe
Q 001363 318 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1092)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~-----v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 390 (1092)
+++.........|..|...+.. .+|||||++++.++..++ .|.+||+.+++....
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------ 75 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------ 75 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------
Confidence 3444445667778888766666 899999996555544466 488889988876542
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEE--EEecCCCcEEEEE--------
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL--AFSAPCKQISVIT-------- 460 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~--~~s~d~~~l~l~s-------- 460 (1092)
..+|...+..++|||||++|++++.++.|++||+.+++... ....+...+... .+++|++ .++.
T Consensus 76 -t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~ 149 (388)
T 3pe7_A 76 -TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDW 149 (388)
T ss_dssp -CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGC
T ss_pred -eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccc
Confidence 34455555578899999999999999999999999986443 233444444433 3489998 4543
Q ss_pred --------------EeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCC
Q 001363 461 --------------CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLG 520 (1092)
Q Consensus 461 --------------~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~ 520 (1092)
.+.+..|.+||+.+++.. .+..+...+..+.|+|. |+..|+....+ ..|.++|.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 224578999999998754 44456677888888541 56777777653 367777776654
Q ss_pred ceEEecCCC-CceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeEEEE--EeeccccCCceEEEEEcCCCCEEEEE
Q 001363 521 ARVDYDAPG-LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA 596 (1092)
Q Consensus 521 ~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~ 596 (1092)
......... ..+..++|+|||+.|+..+... .....|++||+.+++.... +.++...........|+|+|+.++..
T Consensus 228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence 443333222 3577889999999887665432 2234599999999875432 22210000001123689999988754
Q ss_pred ---------eCCCcEEEEECCCCceEEEEeCCCCCC--------CCceEEEccCCCEEEEEeC-CCeEEEEEC
Q 001363 597 ---------GDDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILET 651 (1092)
Q Consensus 597 ---------s~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iw~~ 651 (1092)
..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...+|.+
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 456789999999887654433322100 3678899999998887765 566666654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-19 Score=216.04 Aligned_cols=278 Identities=14% Similarity=0.120 Sum_probs=186.7
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC-----cEEEEEECCCCC
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS 409 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~-----~V~~l~~spdg~ 409 (1092)
.....++|+|||+ +++++ |++|++||+.+++.... +.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 3567899999997 67776 89999999999986543 444543 234488999999
Q ss_pred EEEEEeCC---------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 410 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 410 ~las~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+|++++.+ +.+.+||+.+++... +..|.+.+...+|||||+ .|+.+. |+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence 99999876 567799999986443 567788899999999999 466654 78999999988875542
Q ss_pred -EecCCcCe-----------------EEEeecccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCceEEEEEccCC
Q 001363 481 -FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1092)
Q Consensus 481 -~~~~~~~v-----------------~~i~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg 541 (1092)
..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+...|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 22332222 23566 568889998876655 8888764221110 123355667777766
Q ss_pred CEEEEEecCCCCceeEEEEeCCC---C---eEEEEEeecc---ccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECC
Q 001363 542 RRLFSCGTSKEGESFLVEWNESE---G---AIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMN 608 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~---~---~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~ 608 (1092)
.. .....|++||+.+ + +... +.... .+...+..++|+||++.++... .+..|++||+.
T Consensus 223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 223 AV--------NPTVKFFVVNTDSLSSVTNATSIQ-ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (740)
T ss_dssp SC--------CCEEEEEEEETTSCCSSSCCCEEE-ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred Cc--------CCeeEEEEEECCCCCCCCcceEEE-ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC
Confidence 43 1244699999998 7 3332 32200 1236789999999998666543 23479999999
Q ss_pred CCc----eE--EEE--eCCCCCCC---CceEEEccCCCEEE-EEeC-C--CeEEEEECCCCc
Q 001363 609 KVQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN 655 (1092)
Q Consensus 609 ~~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iw~~~~~~ 655 (1092)
+++ +. ..+ ..+..... ...++|+|||+.++ ..+. + ..|++|+..++.
T Consensus 294 tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 887 21 111 22221111 23789999999887 6654 3 457777776553
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-17 Score=183.30 Aligned_cols=312 Identities=10% Similarity=0.091 Sum_probs=195.8
Q ss_pred cCCCEEEEEecCCCCceeEEEEeC--CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCC--C
Q 001363 539 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V 610 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~--~ 610 (1092)
+...+++.++.....++.|++|.+ .+++.......+ ...+..++|+|++++|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 344456666544334556777754 567654443333 3677889999999999998876 7999998765 4
Q ss_pred ceEEEEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCcee
Q 001363 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 689 (1092)
+................+++ +++++++++ .++.+.+|++.....+.....
T Consensus 88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~--------------------------- 138 (361)
T 3scy_A 88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD--------------------------- 138 (361)
T ss_dssp EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE---------------------------
T ss_pred cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce---------------------------
Confidence 43222221111223456666 788777776 578899999864322111000
Q ss_pred ecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcC
Q 001363 690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 769 (1092)
Q Consensus 690 ~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~ 769 (1092)
.+.....+.
T Consensus 139 -------------------------------------------------~~~~~g~~~---------------------- 147 (361)
T 3scy_A 139 -------------------------------------------------VIEFKGSGP---------------------- 147 (361)
T ss_dssp -------------------------------------------------EEECCCCCS----------------------
T ss_pred -------------------------------------------------eEEccCCCC----------------------
Confidence 000000000
Q ss_pred cCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCce-------e-----
Q 001363 770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T----- 835 (1092)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~-------~----- 835 (1092)
. +...+...+.+++|+|||+++++++ ++.+.+|++.... .
T Consensus 148 ----------------~----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 148 ----------------D----------KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp ----------------C----------TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred ----------------C----------ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 0 0001233467788888888776665 5788888876433 1
Q ss_pred -eEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcCCcee--eEee---ccccCCeEEEEEcCCCCEEEEEeCC-
Q 001363 836 -ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGGD- 907 (1092)
Q Consensus 836 -~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~--~~~l---~~h~~~V~~l~~spdg~~l~s~s~D- 907 (1092)
......+......++|+| |++++++++ .++.|.+|++.+++. +..+ ..+...+..++|+|||++|+++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred ccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 112233455678999999 888887777 689999999987754 2222 3344567899999999998766654
Q ss_pred -CcEEEEEcC--CCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eCCcEEEEEc--CCceeeeeeccCCCCC
Q 001363 908 -AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEA--EELTCLKQWFPISSVP 980 (1092)
Q Consensus 908 -g~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~--~~~~~~~~~~~~h~~~ 980 (1092)
+.|.+|++. +++......+.. + ..+..++|+|||++|+++ .++.|.+|++ .+++........+...
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~ 353 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK 353 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC
Confidence 889999996 344322222222 1 247799999999998885 4578999655 4676654432334567
Q ss_pred EEEEEEe
Q 001363 981 ISQATFS 987 (1092)
Q Consensus 981 v~~l~fs 987 (1092)
+.|+.|.
T Consensus 354 p~~v~~~ 360 (361)
T 3scy_A 354 PVCLKFV 360 (361)
T ss_dssp EEEEEEE
T ss_pred CeEEEEc
Confidence 8999886
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-17 Score=186.47 Aligned_cols=300 Identities=13% Similarity=0.110 Sum_probs=196.5
Q ss_pred ecCCCceEEEEEc----CCCcEEEEec--CCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 342 FHPVQHTLLLVGT----NVGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 342 ~spdg~~llasg~----~dg~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
..+... .+.+|+ .++.|.+|++ .+|+..... .. +...+..++|+|||++|++++
T Consensus 9 ~~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~ 68 (361)
T 3scy_A 9 TTDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVN 68 (361)
T ss_dssp GGGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEE
T ss_pred hCCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEE
Confidence 344443 455664 3567888876 455543320 11 567788899999999999998
Q ss_pred CC----CEEEEEEccCC-CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE---ecC---
Q 001363 416 SK----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EGH--- 484 (1092)
Q Consensus 416 ~d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---~~~--- 484 (1092)
.+ +.|.+|++... ..+........+......+++ +++. ++++...++.|.+|++.+...+..+ ..+
T Consensus 69 ~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 69 EFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp CCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred ccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 75 79999998763 223333344445556777777 7773 3444457889999999754333211 111
Q ss_pred --------CcCeEEEeecccCCccEEEEEe-cCCeEEEEEcCCCCc------e-------EEecCCCCceEEEEEccCCC
Q 001363 485 --------GAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 485 --------~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~------~-------~~~~~~~~~i~~~~~s~dg~ 542 (1092)
...+.+++|+ ++++++++++ .++.|.+|+++.... . ............++|+|||+
T Consensus 146 ~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK 223 (361)
T ss_dssp CSCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred CCCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence 2234678885 4677665544 589999999886542 1 22233445678999999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCC--CcEEEEECC--CCc--eEE
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--HVIKIWDMN--KVQ--LLT 614 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--g~i~iwd~~--~~~--~~~ 614 (1092)
+++++.. .++.|.+|++.+++.. ..+.....+......++|+|++++++++..+ +.|.+|++. +++ .+.
T Consensus 224 ~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~ 300 (361)
T 3scy_A 224 FAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG 300 (361)
T ss_dssp EEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred EEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence 8887763 2567999999877653 3333322222456899999999999776654 899999985 455 344
Q ss_pred EEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECC--CCceeeec-ccccCceeeeee
Q 001363 615 TIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP--ESNSVDAA-GVLSDNLRKLSV 672 (1092)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~-~~~~~~v~~~~~ 672 (1092)
.+.. ...+..++|+|+|++|++++ .++.|.+|++. +++..... ..+.....|+.|
T Consensus 301 ~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 301 YQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 4443 23478999999999998887 57999996554 55544433 223345555555
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-18 Score=189.66 Aligned_cols=283 Identities=11% Similarity=0.060 Sum_probs=194.6
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-eC
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS 416 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~ 416 (1092)
+.++++++++ ++++++.+++|.+||+.+++.+..... +....+..++|+|||++++++ ..
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEec------------------CCCCCCceeEECCCCCEEEEEeCC
Confidence 3567888887 788999999999999999887654211 122257889999999976554 56
Q ss_pred CCEEEEEEccCCCcccceEEEc-cc-----ccceeEEEEecCCCcEEEEEEeCC------------CcEEEEECCCCce-
Q 001363 417 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR- 477 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~-~h-----~~~v~~~~~s~d~~~l~l~s~~~d------------~~i~vwd~~~~~~- 477 (1092)
++.|.+||+.+++... .+. .+ ...+.+++|+|||+ .+++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 8899999999886544 232 22 23478999999999 56666654 8999999998543
Q ss_pred --eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC------------------------c
Q 001363 478 --TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------G 531 (1092)
Q Consensus 478 --~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------~ 531 (1092)
+..+. +...+.+++|++ +++ +++++ +.|.+||..+++....+..... .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 334577888855 666 55543 4499999988876665543320 2
Q ss_pred eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE-EeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 001363 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
...+++++++........ ....+..+|..+++.... +... ...+..++|+| ++++++++ ++.|.+||+.+
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence 344666655532211110 011233366666553221 1122 35788999999 99999888 88999999999
Q ss_pred CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001363 610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
++.+..+.... .+..++|+|+|++|++++.++.|.+||..+++.+..+.
T Consensus 285 ~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 285 RKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp TEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 99888887543 36789999999999988889999999999887776654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=203.76 Aligned_cols=271 Identities=13% Similarity=0.091 Sum_probs=188.1
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce----------eeEE-----ecCCCCCeEEEEEcCCCCCEEE----EE
Q 001363 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----------TILT-----IMPPSPTATSLAFNPHDNNVIA----IG 862 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~----------~~~~-----~~~~~~~i~~l~~s~~d~~~la----sg 862 (1092)
...+..+++++++.++++++.+.+++|+..... .+.. ...+...|.+++|+| ++++|| +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 345788999999999999986559998764211 1111 112456799999999 899999 78
Q ss_pred eCCCcEEEEEcCCc--------e---eeEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001363 863 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~--------~---~~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 930 (1092)
+.|+.|+|||+.++ + .+..+.+|...|.+++|+|+ +++|++++.||+|++||+.++... ....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-----~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-----CATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-----EEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-----eecc
Confidence 89999999999765 2 24666789999999999998 899999999999999999986321 1122
Q ss_pred CCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeecc------CCCCCEEEEEEecCCCEEEEE-ECCCc-
Q 001363 931 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTS-FVDGT- 1001 (1092)
Q Consensus 931 ~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~-~~Dg~- 1001 (1092)
+|.. .|.+++|+|+|++|++ +.|++|++||.. ++....+.. .|...|.+++|++++.++++. +.||.
T Consensus 190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 2332 6999999999999999 578999999998 444433211 234489999999999887653 34433
Q ss_pred -----EEEEEcCCCce-----EEeeccccccCCCCccccccceEEEECCCCCCEEEEEeC-CCcEEEEecCCCCCccccC
Q 001363 1002 -----LSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT-NGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus 1002 -----i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~-dg~v~~w~~~~~~~~~~~~ 1070 (1092)
+++|++..... ...+....+.... .....+.+.+-++ .+++++++. .+.|.+......++.|...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~l~d-w~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCT---ERQHHYYLSYIEE-WDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCS---SSCCCEEEEEEGG-GTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCC---CcCcceeeehhcc-CCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 89999986532 1122111111111 1111123444453 455555544 5679999887777678887
Q ss_pred CCCCcccCCCCCCccc
Q 001363 1071 PPDEIVGDQPTSTSEG 1086 (1092)
Q Consensus 1071 ~~~~~~~~~~~~~~~~ 1086 (1092)
...|..+++.+.+.++
T Consensus 342 ~~~d~~ra~lP~~~~~ 357 (434)
T 2oit_A 342 LLEDSSRAELPVTDKS 357 (434)
T ss_dssp EECGGGCCBCCBCTTS
T ss_pred eccccccccccCCCCC
Confidence 7778777777666553
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-18 Score=207.74 Aligned_cols=379 Identities=12% Similarity=0.034 Sum_probs=241.4
Q ss_pred eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce--EEEEEcCCCCEEEEEeCC---------C
Q 001363 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD---------H 600 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~d---------g 600 (1092)
..++.|+|||++++++ ++.|++||..+++....+.++......+ ..+.|+|||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999988875 4469999999999888888776222223 348899999999998876 5
Q ss_pred cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc-cccCceeeeeecCCCccc
Q 001363 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVT 679 (1092)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 679 (1092)
.+.+||+.+++... +.. +...+..++|||||+.||.+. ++.|++|+..++...+... ++...
T Consensus 93 ~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67799999987643 322 234578999999999999885 5899999998775433211 10000
Q ss_pred cccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-Cee
Q 001363 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVH 758 (1092)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i 758 (1092)
+..+.. --+|.-+ -......+.|||||+.|+.+..| +.+
T Consensus 156 ---------------------~~~g~~---~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~v 195 (740)
T 4a5s_A 156 ---------------------IYNGIT---DWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTEV 195 (740)
T ss_dssp ---------------------EEESBC---CHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred ---------------------eecCcc---cccccch----------------hcCCCcceEECCCCCEEEEEEEcccCC
Confidence 000000 0000000 01223457999999999988766 458
Q ss_pred EEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC---ce-
Q 001363 759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK- 834 (1092)
Q Consensus 759 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~---~~- 834 (1092)
.+|++..... .. .+...+..+.+.+.|..- ...+|++||+.+ ++
T Consensus 196 ~~~~~~~~~~-----------------~~------------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 196 PLIEYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp CEEEEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSC
T ss_pred ceEEEEeecC-----------------CC------------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCc
Confidence 8887653210 00 133445666777666421 123689999998 73
Q ss_pred -eeEEec------CCCCCeEEEEEcCCCCCEEEEEeC----CCcEEEEEcCCce----ee--Eee--ccccCCeE-----
Q 001363 835 -TILTIM------PPSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT----- 890 (1092)
Q Consensus 835 -~~~~~~------~~~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~----~~--~~l--~~h~~~V~----- 890 (1092)
....+. ++...+..++|+| |+++++.... +..|++||+.+++ +. ..+ .+|...|.
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~ 322 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS 322 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence 233343 2677899999999 8887666543 3379999999987 32 222 45665554
Q ss_pred EEEEcCCCCEEE-EEeC-C--CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeC-----C--c
Q 001363 891 GLVFSDALNILV-SSGG-D--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--H 958 (1092)
Q Consensus 891 ~l~~spdg~~l~-s~s~-D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d-----~--~ 958 (1092)
.++|||||+.|+ ..+. + ..|.+||+.+++.. +...+.. .+..+. ++|++.|+. +.. + .
T Consensus 323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ 392 (740)
T 4a5s_A 323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRN 392 (740)
T ss_dssp CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBE
T ss_pred CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeE
Confidence 789999999887 6654 3 46888898875522 2223322 244443 355777766 432 2 3
Q ss_pred EEEEEcCCceeeeeec---cCCCCCEEEEEEecCCCEEEEEECC---CcEEEEEcCCCceEEee
Q 001363 959 LAIYEAEELTCLKQWF---PISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 959 i~lwd~~~~~~~~~~~---~~h~~~v~~l~fs~dg~~l~t~~~D---g~i~vwd~~~~~~~~~~ 1016 (1092)
|+..++..+.....+. .+....+..+.|||||++++..... ..+.+++..+++....+
T Consensus 393 ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 393 LYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp EEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 5555555444321222 1234678899999999987755433 36888898888765444
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=197.75 Aligned_cols=221 Identities=12% Similarity=0.038 Sum_probs=160.2
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE-
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG- 412 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la- 412 (1092)
...++.+++++++. ++++|+.++ ++||+...-..... . -.+.. ....+.......|...|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~-~--~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNK-P--GDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCC-T--TCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcc-c--ccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34789999999998 677788777 99987642110000 0 00000 000000011224677899999999999999
Q ss_pred ---EEeCCCEEEEEEccCC--------CcccceEEEcccccceeEEEEecC-CCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 413 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 413 ---s~~~d~~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7788999999999765 222334456789999999999998 56 899999999999999999988777
Q ss_pred EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEccCCCEEEEEecCC--
Q 001363 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK-- 551 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~~-- 551 (1092)
..+|...|.+++|++ +|.+|++|+.||.|++||.+ ......+..+ ...+.+++|++++.++++.....
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 788999999999965 57899999999999999998 4444444332 23789999999988887655321
Q ss_pred -CCceeEEEEeCCCC
Q 001363 552 -EGESFLVEWNESEG 565 (1092)
Q Consensus 552 -~~~~~i~iwd~~~~ 565 (1092)
+....+++|++...
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 11234889998754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=208.28 Aligned_cols=236 Identities=16% Similarity=0.170 Sum_probs=175.3
Q ss_pred CCcEEEEEECCCCCEEEEEeC-CCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeC---CCcEEEE
Q 001363 396 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW 470 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~---d~~i~vw 470 (1092)
..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+..++|+|| + ++++++. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 457999999999999999887 999999999776533 344555 68999999999 5 6776664 4555665
Q ss_pred ECCC---CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 471 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 471 d~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
.+.. +... .+..+ ..+...+|++++++..+++++.++. .+||+.+++.......+. .+++|+|||++++++
T Consensus 94 ~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5432 3322 33322 2344567777766556666555555 499998876554443332 789999999999988
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEeCCCCCCCC
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
+.+..+...|++||+.+++.. .+..+. ..+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ...+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~ 240 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDF 240 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcCh
Confidence 765444477999999988765 555555 7789999999999999888888 8999999998877 44433 2335
Q ss_pred ceEE--------EccCCCEEEEEeCCCeEEEEEC
Q 001363 626 PRIC--------FNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 626 ~~v~--------~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
..++ |+|||.++++++.++.+++|++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 5666 9999999999999999999998
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-18 Score=191.81 Aligned_cols=257 Identities=11% Similarity=0.027 Sum_probs=178.0
Q ss_pred ecCCCCcEEE-----EEECCCCCEEEEEeC-CC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC
Q 001363 392 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1092)
Q Consensus 392 l~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~ 463 (1092)
++.|...+.. .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 6667766666 899999999999987 66 48888998876443 2345555566789999999 7888888
Q ss_pred CCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe----------------------cCCeEEEEEcCCCCc
Q 001363 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA 521 (1092)
Q Consensus 464 d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------------------~dg~i~vwd~~~~~~ 521 (1092)
++.|++||+.+++....+..+...+....+..++++.+++... .++.|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877777677666555555567777777432 346799999988754
Q ss_pred eEEecCCCCceEEEEEcc-CCCEEEEEecCCC--CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC
Q 001363 522 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 522 ~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
.. +..+...+..++|+| ||+.|+.+..... ....|+++|..++.......... ...+....|+|||+.|+..+.
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence 43 334455688999999 9999988775321 14468889987665433332221 124778899999998866442
Q ss_pred -C----CcEEEEECCCCceEEEEeCCCC--C-CCCceEEEccCCCEEEEE---------eCCCeEEEEECCCCce
Q 001363 599 -D----HVIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESNS 656 (1092)
Q Consensus 599 -d----g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iw~~~~~~~ 656 (1092)
+ +.|++||+.+++.......... . ......+|+|||+.|+.. ..+..|++|++.+++.
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 2 2399999999875443322210 0 012334799999988864 4466899999887643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-17 Score=184.05 Aligned_cols=297 Identities=9% Similarity=0.013 Sum_probs=197.8
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
..++.++++++.++.|.+||+.+++....+..+. ..+..++|+|+|++++++.. .++.|++||+.+++.+..+...
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcc
Confidence 4466889999999999999999887766665443 25678999999997776552 3567999999999988776642
Q ss_pred ccc---CCceEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCce---EEEEeCCCCCCCCceEEEccCCCE
Q 001363 575 QLQ---HNSVSVVHFDTAKDQILAAGDD------------HVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTL 636 (1092)
Q Consensus 575 ~~~---~~~v~~~~~~~~~~~l~~~s~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1092)
... ...+..++|+|+++++++++.+ +.|.+||+.+++. +.....+ ..+.+++|+|+|+
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS- 160 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---CcccceeECCCCc-
Confidence 200 1236788999999999998865 8999999988543 3344433 2478899999999
Q ss_pred EEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
+++++ +.|.+||..+++....+......... +. .+ ..+.+|...
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~--~~---------------------~~-----------~~~~~~~~~ 204 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKG--YS---------------------AP-----------DVLYFWPHQ 204 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCCTT--BC---------------------CC-----------BCCCCCCCC
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCCcc--cc---------------------Cc-----------cceeeecCC
Confidence 55554 34999999888766544321100000 00 00 112223211
Q ss_pred cccCccccccccCCccccccEEEEEEecCCcEEE-----------EeecCCeeEEEeecCCCcCcCcccccccCCccccC
Q 001363 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-----------ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-----------~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1092)
... ........+++++++.... .....+.+.+|++.
T Consensus 205 ~~~------------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 251 (349)
T 1jmx_B 205 SPR------------HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--------------------- 251 (349)
T ss_dssp CTT------------CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------------------
T ss_pred Ccc------------eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------------------
Confidence 000 0001233455655542211 11222333333321
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEEec-CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 001363 786 RHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 864 (1092)
Q Consensus 786 ~~g~~~~~~~l~~~~~~~~v~~~~~s~-dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~ 864 (1092)
.+...+..++++| |+++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.
T Consensus 252 --------------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~ 314 (349)
T 1jmx_B 252 --------------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGT 314 (349)
T ss_dssp --------------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESB
T ss_pred --------------cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecC
Confidence 1345678999999 99999988 88999999999998887763 34577999999 8888888888
Q ss_pred CCcEEEEEcCCceeeEeeccc
Q 001363 865 DSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 865 dg~v~iwd~~~~~~~~~l~~h 885 (1092)
++.|.+||+.+++.+..+...
T Consensus 315 ~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 315 FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SSEEEEEETTTTEEEEEEECS
T ss_pred CCeEEEEeccccceeeeeecC
Confidence 999999999999988877644
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-17 Score=183.06 Aligned_cols=249 Identities=9% Similarity=0.104 Sum_probs=169.2
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcC-CceeeEEecC-CCCCeEEEEEcCCCCCE--EEEEe-------------CC
Q 001363 803 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNNV--IAIGM-------------DD 865 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~~--lasg~-------------~d 865 (1092)
..+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| |+++ ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 45778999999999988875599999997 7776543321 112356789999 8884 55553 68
Q ss_pred CcEEEEEcC-CceeeEeec----cccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeecCCCCcCCCCC
Q 001363 866 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS 938 (1092)
Q Consensus 866 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 938 (1092)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|++. +++......+.... + ...
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GDH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TCC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CCC
Confidence 999999997 466544443 25567999999999998887764 6789999998 66543222222111 0 124
Q ss_pred ceEEEEccCCCEEEEEe--CCcEEEEEcC--Cceeee---ee--cc----CCCC------CEEEEE-EecCCCEEEEEEC
Q 001363 939 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV 998 (1092)
Q Consensus 939 v~~l~~s~dg~~la~~~--d~~i~lwd~~--~~~~~~---~~--~~----~h~~------~v~~l~-fs~dg~~l~t~~~ 998 (1092)
+..++|+|||++|+++. ++.|.+|++. +++... .+ .. +|.. .+..++ |||||++|++++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78999999999998753 5789999875 555421 11 11 1222 588999 9999999887764
Q ss_pred CC------cEEEEEcC-CCceEEeeccccccCCCCccccccceEEEECCC--CCCEEEEEeCC-CcEEEEecCCC
Q 001363 999 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1063 (1092)
Q Consensus 999 Dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~~~~d-g~v~~w~~~~~ 1063 (1092)
+. +|.+|++. +|++........... . .+..++++|. |+++|+++..+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-----~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-----S--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-----C--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCC-----C--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 32 89999996 666543211000011 1 1224667884 47888888765 89999998543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-16 Score=176.17 Aligned_cols=296 Identities=10% Similarity=0.109 Sum_probs=201.3
Q ss_pred CCCceEEEEE-----cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe---
Q 001363 344 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--- 415 (1092)
Q Consensus 344 pdg~~llasg-----~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~--- 415 (1092)
+++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|++++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~ 71 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH 71 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence 3566555443 2468999999999987653 3334444 899999999999986
Q ss_pred -------CCCEEEEEEccCCCcccceEEEcc---cccceeEEEEecCCCcEEEEEEe--CCCcEEEEECCCCceeEE-Ee
Q 001363 416 -------SKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE 482 (1092)
Q Consensus 416 -------~d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~-~~ 482 (1092)
.++.|.+||..+++.+..+..... +......++|+|||+ +|+++. .+++|.+||+.+++.+.. +.
T Consensus 72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 256799999998876654322111 223567899999999 455544 368999999999988877 54
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-------EecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-------~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
. ... ..+.+.|.. ...+++.+.||.+.+|++....... .+.....+ ..+.+++++..++..+. ++
T Consensus 150 ~-~~~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~ 221 (361)
T 2oiz_A 150 A-AGC-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG 221 (361)
T ss_dssp G-TTE-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred C-CCc-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence 2 221 223344432 3678889999999999987533322 11122222 23345677877776654 45
Q ss_pred eEEEEeCCCCeE--EEEEeecc---cc----CCceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceEEE
Q 001363 556 FLVEWNESEGAI--KRTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 556 ~i~iwd~~~~~~--~~~~~~~~---~~----~~~v~~~~~~~~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~ 615 (1092)
.++++|...+.. ...+.... .. ......++|+|+++.++++.. .+.|.+||+.+++.+..
T Consensus 222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 699999875542 22221100 00 011123689999988887643 35899999999999999
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC--ceeeecccccCceeeeeecCC
Q 001363 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
+..+. +..++|+|||++|+++.. +.|.+||..++ +.+..+......-..+++.|+
T Consensus 302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 98764 789999999999998887 99999999999 888776555555666677654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-17 Score=184.39 Aligned_cols=299 Identities=11% Similarity=-0.002 Sum_probs=194.2
Q ss_pred CcceeeecccCCCC-----ceEEeecCCCceEEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC
Q 001363 323 PKTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1092)
Q Consensus 323 p~~~~~~l~~h~~~-----V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h 395 (1092)
....+..|..+... +..++|||||++++++...+ ..|.+||+.+++... +..+
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~ 78 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEG 78 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCS
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecC
Confidence 34445666655433 88999999999655555443 368888998876543 2223
Q ss_pred CCc-EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeE-------------------EEEecCCCc
Q 001363 396 GVS-VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQ 455 (1092)
Q Consensus 396 ~~~-V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------~~~s~d~~~ 455 (1092)
... ...++|||||++|++++.++.|++||+.+++... ....+...... ++|+|+++.
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~ 155 (396)
T 3c5m_A 79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW 155 (396)
T ss_dssp SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc
Confidence 333 3347899999999999999999999999876432 22223322222 356788873
Q ss_pred EEEEEE-----eCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEE
Q 001363 456 ISVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVD 524 (1092)
Q Consensus 456 l~l~s~-----~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~ 524 (1092)
++.+ ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+........
T Consensus 156 --~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 156 --EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp --HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred --eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence 3332 45678999999998765544 46677888888652 45556665543 3588888876554333
Q ss_pred ecCC-CCceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEe----
Q 001363 525 YDAP-GLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG---- 597 (1092)
Q Consensus 525 ~~~~-~~~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s---- 597 (1092)
.... ...+..++|+|||++|+..+... .....|++||+.+++....... . ... +.|+| +++.+++++
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC-
T ss_pred eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcc
Confidence 3321 23578899999999888775432 1224599999998876543322 2 123 88999 999888754
Q ss_pred ------------CCCcEEEEECCCCceEEEEeCCCCC--------CCCceEEEccCCCEEEEEeC-CCeEEEE--ECCCC
Q 001363 598 ------------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKIL--ETPES 654 (1092)
Q Consensus 598 ------------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw--~~~~~ 654 (1092)
.++.|++||+.+++........... ..+..++|+|+|+.|+.++. ++...+| ++.++
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 3478999999888754333222110 02456899999999887775 4544444 44444
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-16 Score=178.17 Aligned_cols=250 Identities=9% Similarity=0.058 Sum_probs=172.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc-CCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-----------
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 462 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~----------- 462 (1092)
+...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+++++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 34568889999999999999888 89999997 665332 1111111 235678999999853355553
Q ss_pred --CCCcEEEEECC-CCceeEEEe----cCCcCeEEEeecccCCccEEEEEe-cCCeEEEEEcC-CCCceE--Eec--CCC
Q 001363 463 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG 529 (1092)
Q Consensus 463 --~d~~i~vwd~~-~~~~~~~~~----~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~--~~~--~~~ 529 (1092)
.++++.+|++. +|+....+. .+...+.+++|++ ||+++++++ .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 466654443 2456788888854 677777765 46899999998 554322 232 235
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeEEE---EEeeccc----cCC------ceEEEE-EcCCCCEE
Q 001363 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI 593 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~~~-~~~~~~~l 593 (1092)
..+..++|+|||++++++.. .++.|.+|+.. +++... .+..... +.. .+..++ |+|+|+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 57889999999999988763 24568887654 565432 2222110 011 478899 99999998
Q ss_pred EEEeCC-C-----cEEEEECC-CCceEEE---EeCCCCCCCCceEEEcc---CCCEEEEEeCC-CeEEEEECCCC
Q 001363 594 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 654 (1092)
Q Consensus 594 ~~~s~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iw~~~~~ 654 (1092)
+++..+ + .|.+|++. +++.... .... ...+..++|+| +|++|+++..+ +.|.+|+....
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876543 2 89999996 6665432 2222 22467899999 89999999864 89999998765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-16 Score=172.69 Aligned_cols=313 Identities=10% Similarity=0.099 Sum_probs=209.9
Q ss_pred CccEEEEEe------cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec------CCCCceeEEEEeCCCC
Q 001363 498 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG 565 (1092)
Q Consensus 498 ~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~------~~~~~~~i~iwd~~~~ 565 (1092)
++++++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555543 3789999999888877666655444 8999999999998863 1223677999999999
Q ss_pred eEEEEEeeccc---cCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEE-EeCCCCCCCCceEEEccCC-CEEE
Q 001363 566 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA 638 (1092)
Q Consensus 566 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~ 638 (1092)
+.+..+..... +......++++|+|++++++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 99888764320 1134667899999999999863 68999999999988887 65432 2235677765 6788
Q ss_pred EEeCCCeEEEEECCC-CceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001363 639 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
+.+.||.+.+|+... ++...... ...+|+...
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~ 200 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD 200 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence 888999999998764 32221100 001111110
Q ss_pred ccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC
Q 001363 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797 (1092)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 797 (1092)
.. ..+.+++++..++..+.++.+.++++....... +..|........ ...
T Consensus 201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~ 250 (361)
T 2oiz_A 201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN 250 (361)
T ss_dssp -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT
T ss_pred -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc
Confidence 00 011224555555555666777777764321100 000111000000 000
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe------------CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001363 798 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 798 ~~~~~~~v~~~~~s~dg~~l~~~s------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
-.......++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| |+++|++++.
T Consensus 251 --~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~- 324 (361)
T 2oiz_A 251 --WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG- 324 (361)
T ss_dssp --CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred --cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence 0011122378999988777653 2479999999999999998776 99999999 8889998887
Q ss_pred CcEEEEEcCCc--eeeEeeccccCCeEEEEEcCCCC
Q 001363 866 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 866 g~v~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~ 899 (1092)
+.|.+||..++ +.+..+..+......++++|||+
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999 99999877888889999999986
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-14 Score=167.33 Aligned_cols=328 Identities=11% Similarity=0.115 Sum_probs=223.6
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceEEEEeCCCCCCCCceEEEc
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.|.++|..+++.+..+... ..+..+.|+||++++++++.++.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEc
Confidence 678999999999999888753 356789999999999999999999999996 888888877543 25789999
Q ss_pred ----cCCCEEEEEeC-CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecc
Q 001363 632 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1092)
Q Consensus 632 ----~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1092)
|||++++++.. ++.+.++|..+.+.+..+......+ ++.
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~-----------------------------~~~------- 292 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-----------------------------DEQ------- 292 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT-----------------------------TTC-------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc-----------------------------ccc-------
Confidence 69998888765 5999999988877665443110000 000
Q ss_pred ccccceeccccccCccccccccCCccc-cccEEEEEEecCCcEEEEe-ecCCeeEEEeecCCCcCcCcccccccCCcccc
Q 001363 707 ENKSEVEKPLFARPSECQSLLLPSKVK-ANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 784 (1092)
Q Consensus 707 d~~i~lw~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 784 (1092)
..| ...+..+.+++++..++.. ...|.+.++++.....
T Consensus 293 ------------------------~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~---------------- 332 (567)
T 1qks_A 293 ------------------------EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN---------------- 332 (567)
T ss_dssp ------------------------CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE----------------
T ss_pred ------------------------cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc----------------
Confidence 001 1246667777776554444 4458888877543210
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC-----CCCCeEEEEEcCCCCC
Q 001363 785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNN 857 (1092)
Q Consensus 785 ~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~ 857 (1092)
+....+ ........+.|+|||++++++. ++.|.++|+.+++.+..+.. |.+.-..+ ++|+.+.
T Consensus 333 ------~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~ 402 (567)
T 1qks_A 333 ------LKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGP 402 (567)
T ss_dssp ------EEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEE
T ss_pred ------ceeeee---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCc
Confidence 111111 1233456789999999998886 58899999999998776643 33222222 6783355
Q ss_pred EEEEEe-CCCcEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCce--
Q 001363 858 VIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI-- 920 (1092)
Q Consensus 858 ~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-------Dg~I~iwd~~~~~~-- 920 (1092)
+.+++. .++.|.++|..+ .+.+.++......-..+..+||+++|..... ..+|.|+|+.+.+.
T Consensus 403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g 482 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG 482 (567)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccc
Confidence 555554 468999999988 5677887765444345788999999887663 35899999987511
Q ss_pred --eeeeeeecC--CCCcCCCCCceEEEEccCCCEEEEE-e-----CCcEEEEEcCCceeeeeec
Q 001363 921 --QTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF 974 (1092)
Q Consensus 921 --~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~-~-----d~~i~lwd~~~~~~~~~~~ 974 (1092)
.....+... .+.......+..+.|+|||+.+.++ . ++.|.|+|..+++.+..+.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 483 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 111222210 0000011358899999999988774 2 6889999999999877643
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-15 Score=185.61 Aligned_cols=295 Identities=10% Similarity=0.002 Sum_probs=196.1
Q ss_pred eecccCCCCceEEeecCCCceEEEEE--cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE-----
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN----- 400 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg--~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~----- 400 (1092)
..+.+|...|..++|++++- +++++ +.++...||....+..... +..|...+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~ 76 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE 76 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence 45678999999999999865 56666 5578899999654443332 445655555
Q ss_pred ----EEEEC--CCCCE-EEEEeC-CCEEEEEEcc--C-CCcccceEEEcc-----cccceeEEEEecCCCcEEEEEEeCC
Q 001363 401 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD 464 (1092)
Q Consensus 401 ----~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~l~s~~~d 464 (1092)
..+|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|||||+ .|++++.|
T Consensus 77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~ 150 (662)
T 3azo_A 77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE 150 (662)
T ss_dssp TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence 56565 99999 887654 4556666665 3 43 22 3444 677899999999999 67766665
Q ss_pred ----------CcEEEEECCC------CceeEEEe-cCCcCeEEEeecccCCccEEEEEecC--------CeEEEEEcC-C
Q 001363 465 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYD-S 518 (1092)
Q Consensus 465 ----------~~i~vwd~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~d--------g~i~vwd~~-~ 518 (1092)
..|++||+.+ ++ ...+. .+...+..++| ++||++|+.++.+ ..|.+||+. +
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 5899999988 54 44555 55666777777 4578899887755 379999998 4
Q ss_pred C---CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC-----ceEEEEEcCCC
Q 001363 519 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK 590 (1092)
Q Consensus 519 ~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~ 590 (1092)
+ ........+...+..++|+|||+.++++.. ++...|++||..+++.......+..... .+..++|+|++
T Consensus 228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence 5 233333344678899999999995555433 3344789999878876554443321000 14678899999
Q ss_pred CEEEEEeCCCcEEEE--ECCCCceEEEEeCCCCCCCCceEEEccCCCE--EEEEeCCC--eEEEEECCCCceee
Q 001363 591 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSVD 658 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iw~~~~~~~~~ 658 (1092)
..+++++. +.+++| |..+++ +..+..+. ..+..+ +++++.. ++.++.+. .|.+++..+++...
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred EEEEEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 99999988 999999 655555 55555442 234444 1444443 33444454 45556666665443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-15 Score=165.92 Aligned_cols=262 Identities=10% Similarity=0.118 Sum_probs=177.9
Q ss_pred CceEEeecCCCceEEEEE--------cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 336 SPMSMDFHPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg--------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
.+..+++ ||++++.+. ..++.|.+||+.+++... + ..+..++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 5677788 898655442 125679999998876432 2 46788999999
Q ss_pred CCEEEEEeCC---C--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-------------------
Q 001363 408 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------------- 463 (1092)
Q Consensus 408 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------------------- 463 (1092)
|++||+++.+ + .|.+|++.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeec
Confidence 9999988653 3 47888888765332 223334 999999999994 555442
Q ss_pred --------CCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCC-------eEEEEEcCCCCceEEecCC
Q 001363 464 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP 528 (1092)
Q Consensus 464 --------d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-------~i~vwd~~~~~~~~~~~~~ 528 (1092)
...|.+||+.+++.+..+.. . .+..++|+ +|| +++++..++ ...+|.+++ .....+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWED-GKEEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEET-TEEEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeCC-CceEEeccC
Confidence 25799999999887555654 3 77788885 467 777776542 445665553 333333333
Q ss_pred CCceEEEEEccCCCEEEEEecCCC----CceeEEEEeCCCCeEEEEEeeccccCCceEE-EEEcCCCCEEEEEeCCCcEE
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~s~dg~i~ 603 (1092)
..+..+ +|||++|+.++.... ....|++|| +++.......+. ..+.. +.|+ ++ .+++++.++.++
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 444443 999999988775331 245799999 666544444433 56775 8999 88 888899999999
Q ss_pred EEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE-EEEECC
Q 001363 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP 652 (1092)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iw~~~ 652 (1092)
+| +.+++....... ...+..++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444432 23578899999 677777776654 677665
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-14 Score=161.96 Aligned_cols=325 Identities=13% Similarity=0.141 Sum_probs=219.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC--CCceeeecccccC
Q 001363 588 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSD 665 (1092)
Q Consensus 588 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~ 665 (1092)
|.+..+++...++.|.++|..+++.+..+.... .+..++|+|||+++++++.++.|.+||+. +.+.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence 334456667789999999999999999887543 35689999999999999999999999985 443332221
Q ss_pred ceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEe--
Q 001363 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-- 743 (1092)
Q Consensus 666 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-- 743 (1092)
.......++|+
T Consensus 238 -------------------------------------------------------------------~G~~P~~ia~s~~ 250 (567)
T 1qks_A 238 -------------------------------------------------------------------IGSEARSIETSKM 250 (567)
T ss_dssp -------------------------------------------------------------------CCSEEEEEEECCS
T ss_pred -------------------------------------------------------------------cCCCCceeEEccc
Confidence 11224578888
Q ss_pred --cCCcEEEEeecC-CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCC------CC-CCCeeEEEEecC
Q 001363 744 --NGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS------NS-QEAVPCFALSKN 813 (1092)
Q Consensus 744 --~~g~~l~~~~~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~------~~-~~~v~~~~~s~d 813 (1092)
|||++++++... +.+.++|.... +.+......+. .| ...+..+.++++
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~----------------------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETL----------------------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHY 308 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTC----------------------CEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCC----------------------cEEEEEeccccccccccccCCCceEEEEEcCC
Confidence 699888777654 78888774332 21222111100 01 236778999998
Q ss_pred CCEEEEEe--CCeEEEEEcCCceee--EEecCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcCCceeeEeecc----
Q 001363 814 DAYLFSAS--GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG---- 884 (1092)
Q Consensus 814 g~~l~~~s--dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~~---- 884 (1092)
+..++... .|.|.++|..+.+.. ..+ ........+.|+| ++++++++. .++.|.++|+.+++.+..+..
T Consensus 309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 309 RPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 77666554 489999998865432 222 2334567899999 788776655 578999999999988766543
Q ss_pred -ccCCeEEEEEcCCCCEE-EEEe-CCCcEEEEEcCCCc-----eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe-
Q 001363 885 -HSKRVTGLVFSDALNIL-VSSG-GDAQIFVWDVDGWG-----IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 955 (1092)
Q Consensus 885 -h~~~V~~l~~spdg~~l-~s~s-~Dg~I~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~- 955 (1092)
|.+.-.. .++|++..+ ++.. .++.|.++|..+.. ......+....+ .-..+.++|+++++.+..
T Consensus 387 Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 387 PHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp BCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECT
T ss_pred CCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecC
Confidence 4332222 257875554 4443 46899999998732 111223332211 223577899999998854
Q ss_pred -------CCcEEEEEcCCc-----eee-eeec-------cCCCCCEEEEEEecCCCEEEEEE-----CCCcEEEEEcCCC
Q 001363 956 -------ETHLAIYEAEEL-----TCL-KQWF-------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNL 1010 (1092)
Q Consensus 956 -------d~~i~lwd~~~~-----~~~-~~~~-------~~h~~~v~~l~fs~dg~~l~t~~-----~Dg~i~vwd~~~~ 1010 (1092)
.++|.++|+.+. ... ..+. ..-...+..+.|++||+++.++. .++.|.|+|..++
T Consensus 460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 358999999877 211 2211 11246789999999999888763 2789999999999
Q ss_pred ceEEeec
Q 001363 1011 EVQCRIL 1017 (1092)
Q Consensus 1011 ~~~~~~~ 1017 (1092)
++..++.
T Consensus 540 ~~~~~i~ 546 (567)
T 1qks_A 540 ELKHVIK 546 (567)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 9988776
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.7e-16 Score=174.07 Aligned_cols=244 Identities=9% Similarity=-0.013 Sum_probs=166.0
Q ss_pred EEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceEEEcccccce-eEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 399 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
+..++|||||++||..... ..|.+||+.+++... +..+...+ ..+.|+|||+ .|+.++.++.|++||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence 6778999999999887543 478899998875332 33333333 3488999999 788888888999999999
Q ss_pred CceeEEEecCCcCeEE---Eee--------------cccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCce
Q 001363 475 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC 532 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~---i~~--------------~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i 532 (1092)
++.......+...... +++ ..+++++.++.. ..+..|.+||+.+++..... .+...+
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~ 190 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL 190 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence 8876666545443322 111 123344444433 35668999999887654443 345578
Q ss_pred EEEEEcc-CCCEEEEEecCCCC--ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEE
Q 001363 533 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI 604 (1092)
Q Consensus 533 ~~~~~s~-dg~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~i 604 (1092)
..+.|+| +++.++.++..... ...|++||..+++......... ...+..+.|+|++++|+.++.+ +.|++
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 8999999 88888777642110 1569999987765433332111 1357889999999988776543 45999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEEe----------------CCCeEEEEECCCCce
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS 656 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~~ 656 (1092)
||+.+++......... .. ++|+| +|+++++++ .++.|++|+..+++.
T Consensus 269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 9999887655443321 23 89999 999888765 347899999987653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-14 Score=153.78 Aligned_cols=242 Identities=10% Similarity=0.092 Sum_probs=174.9
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecC------CCCCeEEEEEc-CCCCCEEEEEeC-CCcEEEE
Q 001363 801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY 871 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~lasg~~-dg~v~iw 871 (1092)
+-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 456688999999999888765 6899999987 666666542 33578899994 5 7777666643 8899999
Q ss_pred EcCCceeeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCE
Q 001363 872 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 872 d~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
| .+++.+..+. .+...+.+++++|+|+++++...++.|.+||..... .. .+... +.. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~--~~~~~-~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LH--KFGCS-KHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE--EEECT-TTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-EE--EeCCC-Ccc---CCcEEEEECCCCCE
Confidence 9 5677776664 345678999999999988888888999999975422 11 12111 111 24789999999997
Q ss_pred EEEE-eCCcEEEEEcCCceeeeeec-cCCCCCEEEEEEecCCCEEEEEECCC-cEEEEEcCCCceEEeeccccccCCCCc
Q 001363 951 FLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1027 (1092)
Q Consensus 951 la~~-~d~~i~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~t~~~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1027 (1092)
+++. .++.|++||.. ++.+..+. .++...+..++++++|+++++...++ .|.+|+. +++.+..+...
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-------- 247 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-------- 247 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------
Confidence 7774 57899999974 55554432 22346789999999999888887776 9999995 56666555421
Q ss_pred cccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1028 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1028 ~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
.....+.+++++| ++.++++ +.|++|++|++....
T Consensus 248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 1112456788998 4665555 689999999986544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-14 Score=159.85 Aligned_cols=248 Identities=12% Similarity=0.095 Sum_probs=181.6
Q ss_pred CCCeeEEEEecCCCEEEEEeCC-------------------------eEEEEEcCCceeeEEec-CCCCCeEEEEEcCCC
Q 001363 802 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD 855 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d 855 (1092)
-..+.+++++|+|+++++...+ .|.+||..+++.+..+. .+......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4568999999999999887743 69999999998877765 3446789999999 8
Q ss_pred CCEEEEEeCCCcEEEEEcCCce-eeEee---------ccccCCeEEEEEcC-CCCEEEEEe-CCCcEEEEEcCCCceeee
Q 001363 856 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC 923 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~sp-dg~~l~s~s-~Dg~I~iwd~~~~~~~~~ 923 (1092)
++++++...++.|++|+..... .+..+ .++......++++| ++.++++.+ .++.|++|+.+. +....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8888888889999999986542 45555 34556789999999 788888886 689999999543 32221
Q ss_pred eeeecC-----CCCcCCCCCceEEEEccC-CCEEEE-EeCCcEEEEEcCCceeeeeec-cCCCCCEEEEEEec------C
Q 001363 924 RSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------D 989 (1092)
Q Consensus 924 ~~~~~~-----~~~~~~~~~v~~l~~s~d-g~~la~-~~d~~i~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~------d 989 (1092)
...... .+.. .....++++|+ |.++++ ..++.|++||..+|+.+..+. ..+...+..++|+| +
T Consensus 181 ~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~ 257 (329)
T 3fvz_A 181 WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN 257 (329)
T ss_dssp ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence 110000 0111 24789999999 555555 367789999999888887653 34567889999999 3
Q ss_pred CCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001363 990 CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 990 g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
|+..++...+.+|++|++.+|+.+..+.... ...-.+..++++| ++.++++...++.|++|++..
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3333333344589999999999887764211 1112456789999 578888888999999999854
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-14 Score=158.26 Aligned_cols=248 Identities=11% Similarity=0.085 Sum_probs=184.1
Q ss_pred CCceEEeecCCCceEEEEEcCC------------------------CcEEEEecCCCCeeEEeeeeeeecccccceeeEe
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 390 (1092)
+.|.+++++|+|+ ++++.+.+ ++|.+||..+|+.+...
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------- 85 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------- 85 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence 4899999999998 67777766 47999999888866420
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-cccceEEE---------cccccceeEEEEec-CCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI 459 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~~~~s~-d~~~l~l~ 459 (1092)
-.++-..+..++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. +++
T Consensus 86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 22455688999999999988888889999999986542 222 33 24445688999999 677 677
Q ss_pred EEe-CCCcEEEEECCCCceeEEEecCC----------cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--
Q 001363 460 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-- 526 (1092)
Q Consensus 460 s~~-~d~~i~vwd~~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-- 526 (1092)
+.+ .++.|++|| .+|+.+..+.... .....+++.+. .+.++++...++.|++|+.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 775 689999999 6788777774322 33778888543 26788888889999999998777666653
Q ss_pred CCCCceEEEEEccCCCEEEEEecC---CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001363 527 APGLGCTRMAYSANGRRLFSCGTS---KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~---~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1092)
.....+..++++| +..+...+.. ......|++||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3455788999999 4444333211 12245799999999999888753222236789999999997777788899999
Q ss_pred EEECCC
Q 001363 604 IWDMNK 609 (1092)
Q Consensus 604 iwd~~~ 609 (1092)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-10 Score=141.04 Aligned_cols=586 Identities=9% Similarity=0.018 Sum_probs=338.1
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|+++.-.++|... .|+.+| +..||- ..... +...... . -.-....|.++...++|.+.+ |
T Consensus 43 n~v~~I~qD~~G~lW--igT~~G-L~ryDG---~~f~~-----~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi-g 104 (795)
T 4a2l_A 43 STVFSIDQDKRGNMW--FATYDG-VNKYDG---YAFTV-----YQHNEDD----P--NSIANDISRIVKTDSQGRVWI-G 104 (795)
T ss_dssp SCEEEEEECTTSCEE--EEETTE-EEEECS---SCEEE-----ECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-E
T ss_pred ceeEEEEEcCCCCEE--EeecCc-CcccCC---CceEE-----EeCCCCC----C--CcccccceeEEEECCCCCEEE-E
Confidence 489999999999644 444555 566663 22211 1100000 0 000246799999999987665 4
Q ss_pred eCCCEEEEEEccCCCcccceEEEccccc----ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-CcC-e
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V 488 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~-v 488 (1092)
+.+| +..||..+++.. .+..... .|.++...++|. +.+ ++. +.|..||..+++.......+ ... |
T Consensus 105 T~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i 175 (795)
T 4a2l_A 105 TRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI 175 (795)
T ss_dssp ESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred eCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence 4566 899998775421 2222111 288999888887 343 444 45899998776533211111 112 6
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
.++... .++. +..++.++-+..|+..+.+..... ......|.++...++|...+.... .-+..||..+++.
T Consensus 176 ~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~-----~Gl~~~~~~~~~~ 247 (795)
T 4a2l_A 176 ASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEG-----AGLFLINPKTKEI 247 (795)
T ss_dssp EEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBS-----SCEEEEETTTTEE
T ss_pred EEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECC-----CCeEEEeCCCCeE
Confidence 666653 3444 445666556888887665443221 123456888888888876665422 1289999888765
Q ss_pred EEEEeec----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----CCCCCCceEEEccCCCEEE
Q 001363 568 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 568 ~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~ 638 (1092)
....... ......|.++...+++.. ..|+.+ -|.+||..++......... -....|.++...++|. |.
T Consensus 248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 324 (795)
T 4a2l_A 248 KNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW 324 (795)
T ss_dssp EEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred EEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence 4432221 112357999999888764 445555 5899998877654432211 0123577888888876 55
Q ss_pred EEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001363 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~ 718 (1092)
+|+.++-|..|+..+.... .... . +.
T Consensus 325 igt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~--------------------- 350 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY--------------------- 350 (795)
T ss_dssp EEESSSCEEEECGGGGSSE-EECC----------C----------------------TT---------------------
T ss_pred EEECCCCeEEeCCCcccce-EEcC----------C----------------------CC---------------------
Confidence 6777677777765433111 0000 0 00
Q ss_pred cCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCC
Q 001363 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 798 (1092)
+.......|.++...++|. +..++.++-+..|+...... ..+....+. .. ..+
T Consensus 351 ----------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-~~-~~l-- 403 (795)
T 4a2l_A 351 ----------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-SA-RGI-- 403 (795)
T ss_dssp ----------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC--------CC--
T ss_pred ----------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-cc-cCC--
Confidence 0001234688888888887 44455555566665332211 001000000 00 000
Q ss_pred CCCCCCeeEEEEecCCC-EEEEEeCCeEEEEEcCCceeeEEec----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 001363 799 SNSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~-~l~~~sdg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 873 (1092)
....|.+++..++|+ +.+...++.+..||..+++...... .+...|.++...+ ++.+.+ |+.+ -+.+|+.
T Consensus 404 --~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~ 478 (795)
T 4a2l_A 404 --GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNP 478 (795)
T ss_dssp --SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEET
T ss_pred --CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeC
Confidence 245789999999998 5554445789999998776443321 1345789999988 676555 4554 5889998
Q ss_pred CCceeeEeec------cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC
Q 001363 874 RSSEVISKLE------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 874 ~~~~~~~~l~------~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
.+++...... -+...|.++...++|++.+... . -|..|+..+++. . ..............|.++...++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~ 553 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASN 553 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTT
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCC
Confidence 8776433221 1236799999999988777554 4 488999887543 1 11000000111136889999999
Q ss_pred CCEEEEEeCCcEEEEEcCCceeeeee-ccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCC
Q 001363 948 QTRFLLVHETHLAIYEAEELTCLKQW-FPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus 948 g~~la~~~d~~i~lwd~~~~~~~~~~-~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
|.+.+++.. .+..||..+++...-. ..+ ....|.++...++|.+.+++ . +-|..|+..++... .+....-++..
T Consensus 554 g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~~ 629 (795)
T 4a2l_A 554 GIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQSN 629 (795)
T ss_dssp SCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSCS
T ss_pred CCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCccc
Confidence 997776554 7889998776543311 111 14568899999999876655 3 55788998877543 34322222222
Q ss_pred CccccccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1026 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
.+..-++..++ + ..|..|+.+|- ..++.
T Consensus 630 ----~f~~~~~~~~~-~-G~l~~g~~~Gl-~~~~p 657 (795)
T 4a2l_A 630 ----QFNTASYCRTS-V-GQMYFGGINGI-TTFRP 657 (795)
T ss_dssp ----CEEEEEEEECT-T-SCEEEEETTEE-EEECG
T ss_pred ----cCccCceeECC-C-CeEEEecCCce-EEEcH
Confidence 22223455665 3 45777777774 45554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-14 Score=176.07 Aligned_cols=249 Identities=11% Similarity=0.002 Sum_probs=171.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEE--eCCCEEEEEEccCCCcccceEEEccccccee---------EEEEe--cCCCcEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV 458 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~--~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~~~~s--~d~~~l~l 458 (1092)
+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+ |
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L 94 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence 66799999999999887777777 558889999975443332 4566666666 66666 999941 4
Q ss_pred EEEe-CCCcEEEEECC--CCceeEEEec-----CCcCeEEEeecccCCccEEEEEecC----------CeEEEEEcCCC-
Q 001363 459 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL- 519 (1092)
Q Consensus 459 ~s~~-~d~~i~vwd~~--~~~~~~~~~~-----~~~~v~~i~~~~~~~~~~l~s~~~d----------g~i~vwd~~~~- 519 (1092)
+.++ .+..|.+|++. ++.....+.. |...+.+++|+ +||+.|++++.+ ..|.+||+.+.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 4433 35667777765 2034455555 56678888885 477899988877 58999999872
Q ss_pred ----CceEEec-CCCCceEEEEEccCCCEEEEEecCCC----CceeEEEEeCC-CC---eEEEEEeeccccCCceEEEEE
Q 001363 520 ----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVHF 586 (1092)
Q Consensus 520 ----~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~ 586 (1092)
.....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++. ..+..+.|
T Consensus 173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~~ 249 (662)
T 3azo_A 173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAEW 249 (662)
T ss_dssp TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEEE
T ss_pred cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceEE
Confidence 2334444 44567788999999999998875432 13579999998 57 4444444444 67899999
Q ss_pred cCCCCEEEEEeCCC--cEEEEECCCCceEEEEeCCCCC------CCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001363 587 DTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 587 ~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
+|||+.+++++.++ .|++||..+++.......+... ..+..++|+|+++++++++. +.++||.
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 99999777777788 6667777677655443322111 01456777777777777777 7777773
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-13 Score=146.99 Aligned_cols=248 Identities=14% Similarity=0.154 Sum_probs=177.6
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE-CCCCC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-spdg~ 409 (1092)
.+|-..+.+++++|+|+ ++++...++.|.+||.. ++.+...... ....+|...+..+++ .++|+
T Consensus 26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~-------------~~~~~~~~~p~~i~~~~~~g~ 90 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGEC-------------GKRDSQLLYPNRVAVVRNSGD 90 (286)
T ss_dssp TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCB-------------SSSTTCBSSEEEEEEETTTTE
T ss_pred CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEeccc-------------CCCcccccCceEEEEEcCCCe
Confidence 35566899999999998 78888888999999987 5544321100 001234567899999 57777
Q ss_pred EEEEEeC-CCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe--cCC
Q 001363 410 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG 485 (1092)
Q Consensus 410 ~las~~~-d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~ 485 (1092)
++++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||. +++.+..+. ++.
T Consensus 91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL 163 (286)
T ss_dssp EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence 7776643 78899999 4454333 332 3445689999999998 7788778899999995 566666664 344
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEccCCCEEEEEecCCCCce-eEEEEeC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE 562 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~~-~i~iwd~ 562 (1092)
..+..+++.+ ++.++++...++.|++||... +....+... ...+..++++++|+.+++... ++ .|.+||.
T Consensus 164 ~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~ 236 (286)
T 1q7f_A 164 EFPNGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ 236 (286)
T ss_dssp SSEEEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred CCcEEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence 5678888854 667888888899999999743 444444433 246889999999987777643 33 7999995
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
+++.+..+..+. ....+..++++|+++.+++ +.++.|++|+....
T Consensus 237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 566777776543 1234789999999976555 67999999997653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-10 Score=139.06 Aligned_cols=535 Identities=8% Similarity=0.032 Sum_probs=319.0
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.++...++|..++ |+. +.+..||..+++.... ... .......|.++...++|.+.+..
T Consensus 88 n~I~~i~~d~~g~lWi--gT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWI--GTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIST 148 (795)
T ss_dssp SCEEEEEECTTSCEEE--EES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEEE
T ss_pred cceeEEEECCCCCEEE--EeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEEE
Confidence 4799999999998333 344 4589999877653321 000 00000118888888888766654
Q ss_pred eCCCEEEEEEccCCCcccceEEEccc-ccc-eeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcCeEEE
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i 491 (1092)
.. .+..||..+++..... .++ ... |.++...+++. +..++.++.|..||..+++..... ......|.++
T Consensus 149 -~~-gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 149 -PE-GLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp -TT-EEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred -CC-ceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 44 4889998765321100 011 123 88888888886 444565556999998877654321 1234567777
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
... .++. +..++.++-+.+||..+.+....... ....|.++...++|...+... . -|.+||..+
T Consensus 221 ~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQQ--SPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEGT 291 (795)
T ss_dssp EEE--ETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETTT
T ss_pred EEc--CCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCCC
Confidence 653 3444 55555554578888766543322211 235689999998888666542 1 289999888
Q ss_pred CeEEEEEee----ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC--C--CCCCCceEEEccCCCE
Q 001363 565 GAIKRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL 636 (1092)
Q Consensus 565 ~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~ 636 (1092)
+........ .......|.++...++|. +..|+.++-|..|+..++......... . ....|.+++..++|.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence 765443221 112246799999988876 666777778999987665543222111 0 123477888888776
Q ss_pred EEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|.+|+.++-|..|+..++.......... ..
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~---------------------------------~~----------------- 399 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQED---------------------------------ES----------------- 399 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCCC---------------------------------Cc-----------------
Confidence 5567777778888876543211100000 00
Q ss_pred cccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecC
Q 001363 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 796 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 796 (1092)
. . ......|.++...++|..|..++.++-+..|+...... ..+....
T Consensus 400 -------~-~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~--------- 446 (795)
T 4a2l_A 400 -------A-R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRN--------- 446 (795)
T ss_dssp --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTT---------
T ss_pred -------c-c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCC---------
Confidence 0 0 00234578888888888455555555566666433211 1111000
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 001363 797 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1092)
Q Consensus 797 ~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1092)
.......|.++...++|.+.+... +.+.+||..+++....... ....|.++...+ ++.+.+ |+. +-+..
T Consensus 447 -~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~ 521 (795)
T 4a2l_A 447 -SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSV 521 (795)
T ss_dssp -SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEE
T ss_pred -CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEE
Confidence 001345789999999998777665 5688999887655432211 235789999988 676655 444 45888
Q ss_pred EEcCCceeeEeec-------cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001363 871 YNARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 871 wd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
|+..+++. .+. .....|.++...++|.+.++.. .| |..||..+++... .....+.. ...|.++.
T Consensus 522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~ 592 (795)
T 4a2l_A 522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIKR---YNTTNGLP--NNVVYGIL 592 (795)
T ss_dssp EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEEE---ECGGGTCS--CSCEEEEE
T ss_pred EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEEE---eCCCCCCc--hhheEEEE
Confidence 99887765 222 2446799999999998776543 34 8889987754322 22222221 13588899
Q ss_pred EccCCCEEEEEeCCcEEEEEcCCceeeeeeccCC---CCCE--EEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 944 ~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h---~~~v--~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
..++|.+.+++ ++.|..|+..+++... +.... ...+ .++...+||++++ |+.+| +..++..
T Consensus 593 ~d~~g~lWi~t-~~Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 593 EDSFGRLWLST-NRGISCFNPETEKFRN-FTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRPE 658 (795)
T ss_dssp ECTTSCEEEEE-TTEEEEEETTTTEEEE-ECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECGG
T ss_pred ECCCCCEEEEc-CCceEEEcCCCCcEEE-cCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcHH
Confidence 99999877766 5668888887665432 21111 1222 4667788887655 66676 4555543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=152.30 Aligned_cols=274 Identities=10% Similarity=0.023 Sum_probs=188.3
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.+++|+|++. .++..+.++.+++|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCcc-ceeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 4688999999987 466667788899992 332221 44566778999999999988888
Q ss_pred eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC----CcEEEEECCCCceeEEEe--cCCcCe
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV 488 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~--~~~~~v 488 (1092)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||.++++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 888999999998875332 1224567899999999998 66666655 689999988877654443 234568
Q ss_pred EEEeecccCCccEEEEEec------CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 489 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
..+++.+ ++.++++... .+.|..++....+... +......+..++|+|||+.++.+.. .++.|++||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888854 6667776553 2455555554433322 2222235678999999997766542 1457999998
Q ss_pred CC-CeEEEEE-----eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC----CCCCceEEEcc
Q 001363 563 SE-GAIKRTY-----QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK 632 (1092)
Q Consensus 563 ~~-~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~ 632 (1092)
.+ +.....+ .... ....+..++++++++.+++...++.|.+||. +++.+..+..+.. ...+.+++|+|
T Consensus 212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence 63 3322211 1111 0136788999999998888778899999998 5677777654421 11478999999
Q ss_pred CCCEEEEEeCCC
Q 001363 633 NGTLLAVIANEN 644 (1092)
Q Consensus 633 ~~~~l~~~~~dg 644 (1092)
+++.|++++.++
T Consensus 290 dg~~L~v~~~~g 301 (333)
T 2dg1_A 290 GTNQLIICSNDI 301 (333)
T ss_dssp TSCEEEEEEECG
T ss_pred CCCEEEEEeCcc
Confidence 987777766653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-13 Score=167.89 Aligned_cols=250 Identities=10% Similarity=-0.009 Sum_probs=175.6
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCC-----EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-- 466 (1092)
+|...+..++|||||++||.+..++ .|++||+.+++.... .+ ....+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCccc
Confidence 4556789999999999999876543 899999999875442 12 222367899999999 5666666655
Q ss_pred --------------EEEEECCCCcee--EEEec--CCcCeEEEeecccCCccEEEEEec-----CCeEEEEEcCC-----
Q 001363 467 --------------IKVWDAVTGSRT--YSFEG--HGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS----- 518 (1092)
Q Consensus 467 --------------i~vwd~~~~~~~--~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~-----dg~i~vwd~~~----- 518 (1092)
|++|++.+++.. ..+.. |...+..+.| ++||++|+.++. +..|.+||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999987632 22232 4555677777 557788887765 56899999986
Q ss_pred -CC-ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEE
Q 001363 519 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1092)
Q Consensus 519 -~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1092)
+. ....+..+...+.. .|+++|+.|+..+........|++||+.++.. ...+..+. ....+..+.|++++..++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence 42 34444444444444 58899999888775443467899999988742 24444443 013677889987777778
Q ss_pred EEeCCCc--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCc
Q 001363 595 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1092)
Q Consensus 595 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 655 (1092)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .++++.||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888875 566787778877777655 334677889999887665433 4789999998765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-13 Score=147.18 Aligned_cols=249 Identities=12% Similarity=0.052 Sum_probs=177.4
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+..+..+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.++++
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~ 76 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCL 76 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeE
Confidence 3445566666688999999999877889999999999999887 322 3346678999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEccc-ccceeEEEEecCCCcEEEEEE----e-------------CCCc
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITC----G-------------DDKT 466 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~----~-------------~d~~ 466 (1092)
+|+|+++++...++.|.+||..+++.........+. ...+..++++|+|+ ++++. + ..+.
T Consensus 77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcE
Confidence 999998888777789999999887643211111111 23567899999998 67763 2 1345
Q ss_pred EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-CCCc---eEEecCCCCceEEEEEccCCC
Q 001363 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~---~~~~~~~~~~i~~~~~s~dg~ 542 (1092)
|..++.. ++ +..+..+......++|++ +++.+++.+.++.|.+|++. .+.. ...+......+..++++++|+
T Consensus 155 l~~~~~~-g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 155 VFRLAPD-GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp EEEECTT-SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred EEEECCC-CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence 6666654 44 444555666778888854 66777777888999999987 3332 223333344567899999998
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE-cCCCCEEEEEeCCCcEEEEECCCCce
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
..++. .+.|.+||.. ++.+..+..+. . +.+++| .|+++.|++++.++ +..++..+..+
T Consensus 231 l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 231 IWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 76665 2349999986 77777777665 4 888999 58889999988764 55566666544
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-13 Score=149.76 Aligned_cols=285 Identities=11% Similarity=0.040 Sum_probs=175.8
Q ss_pred ceEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC---Ce--
Q 001363 580 SVSVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE---NR-- 645 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g~-- 645 (1092)
.+....+ ||++++... .++.|++||+.+++.... ..+..++|+|||++|+.++.+ +.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4555666 777776542 256799999998875433 236889999999999987754 33
Q ss_pred EEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccc
Q 001363 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~ 725 (1092)
|.+|++.+++......
T Consensus 87 l~~~~~~~g~~~~l~~---------------------------------------------------------------- 102 (347)
T 2gop_A 87 IWVADLETLSSKKILE---------------------------------------------------------------- 102 (347)
T ss_dssp EEEEETTTTEEEEEEE----------------------------------------------------------------
T ss_pred EEEEECCCCceEEEEc----------------------------------------------------------------
Confidence 6666766543221110
Q ss_pred cccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001363 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1092)
Q Consensus 726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v 805 (1092)
... +..++|+|||+.|+.++.+.. .. . ....+
T Consensus 103 -------~~~-~~~~~wspdg~~l~~~~~~~~-------~~---------------------~------------~~~~~ 134 (347)
T 2gop_A 103 -------AKN-IRSLEWNEDSRKLLIVGFKRR-------ED---------------------E------------DFIFE 134 (347)
T ss_dssp -------ESE-EEEEEECTTSSEEEEEEECCC-------C----------------------------------------
T ss_pred -------CCC-ccceeECCCCCEEEEEEccCC-------Cc---------------------C------------CcEEE
Confidence 112 677889999998887765410 00 0 00011
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-------cEEEEEcCCcee
Q 001363 806 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-------TILIYNARSSEV 878 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-------~v~iwd~~~~~~ 878 (1092)
..+.+..+|.-+.......|.+||+.+++.+..+.. . .+..++|+| |+ +++++..++ ...||.+.+++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce
Confidence 122233344332222235699999998887455544 3 788999999 78 888776542 345554445553
Q ss_pred eEeeccccCCeEEEEEcCCCCEEEEEeCCC--------cEEEEEcCCCceeeeeeeecCCCCcCCCCCceE-EEEccCCC
Q 001363 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDA--------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQT 949 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~dg~ 949 (1092)
..+..+ ..+..+ ||||++|+.++.++ .|.+|| +++. .....++. ..+.. ++|+ ||
T Consensus 211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-----~~l~~~~~---~~~~~~~~~s-dg- 274 (347)
T 2gop_A 211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-----MGILDEVD---RGVGQAKIKD-GK- 274 (347)
T ss_dssp -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-----EESSTTCC---SEEEEEEEET-TE-
T ss_pred -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-----EeccccCC---cccCCccEEc-Cc-
Confidence 444445 555554 99999998887543 577777 4331 22222222 24665 8999 88
Q ss_pred EEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcE-EEEEcCCCc
Q 001363 950 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLE 1011 (1092)
Q Consensus 950 ~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i-~vwd~~~~~ 1011 (1092)
++++ ..++.++|| +.+++... +. .+...|.+++|+| .++++++.++.. .+|.++ ++
T Consensus 275 ~~~~~~~~~~~~l~-~~~g~~~~-~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 275 VYFTLFEEGSVNLY-IWDGEIKP-IA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEEEEEETTEEEEE-EESSSEEE-EE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred EEEEEecCCcEEEE-EcCCceEE-Ee-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 6666 577889999 87665433 23 3477899999999 678888877765 888887 54
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.9e-09 Score=127.35 Aligned_cols=588 Identities=12% Similarity=0.103 Sum_probs=335.5
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|+++.-.++|...+ |+.+| +..||-.+ .. .+........ . ..-....|.++...++|..|-+|
T Consensus 19 n~V~~I~qD~~G~lWi--gT~~G-L~ryDG~~---f~-----~~~~~~~~~~--~--~~l~~n~I~~i~~d~~g~~lWig 83 (781)
T 3v9f_A 19 NYVLSITQDKQGFLWF--ATEEG-LNKFDGTR---FI-----TYYKEEQSSS--V--QSITGNELNEVYTDPVQPVIWIA 83 (781)
T ss_dssp SBEEEEEECTTSCEEE--EESSC-EEEECSSS---EE-----EECCCSSCSS--S--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred CEeEEEEECCCCCEEE--ccCCc-CccccCCc---eE-----EEEcCCCCCc--c--ccccccccceEEEcCCCCEEEEE
Confidence 4899999999996444 44555 66676332 21 1110000000 0 00023569999999988845567
Q ss_pred eCCCEEEEEEccCCCcccceEEEc-----c---cccceeEEEEec--CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEID-----A---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG- 483 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~-----~---h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~- 483 (1092)
+.++-+..||..+++.. .+. . ....|.++.... ++. +..++.++.|..+|..+++.. .+..
T Consensus 84 t~~~Gl~~~d~~~~~f~----~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~-~~~~~ 155 (781)
T 3v9f_A 84 TQRAGLNAYNYETQSFS----VYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFT-HYNKS 155 (781)
T ss_dssp ESSSCEEEEETTTTEEE----EECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEE-EESTT
T ss_pred eCCCCcceECCCCCeEE----eeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEE-eeccC
Confidence 77734999998875421 121 0 123588888777 665 444554556899998776543 2321
Q ss_pred -----CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------CCCCceEEEEEccCCCEEEEEecCC
Q 001363 484 -----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 484 -----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
....|.++... .++ .|..++.++-+..||..+.+...... .....|.++...++|...+...
T Consensus 156 ~~~~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~--- 229 (781)
T 3v9f_A 156 TVPALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS--- 229 (781)
T ss_dssp TCTTCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET---
T ss_pred cccCCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC---
Confidence 12346666553 344 45556666567888876654322111 1234688898888888766542
Q ss_pred CCceeEEEEeCCCCeEEEEEeec----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe-------CC-
Q 001363 552 EGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG- 619 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~- 619 (1092)
. -+.+||..+++........ ......|.++...+++. +..|+..+-|.++|..++....... ..
T Consensus 230 --~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~ 305 (781)
T 3v9f_A 230 --K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGD 305 (781)
T ss_dssp --T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCS
T ss_pred --C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCC
Confidence 2 3899998877654332211 11235789998887764 6667765678899988765432221 10
Q ss_pred ----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCC
Q 001363 620 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1092)
Q Consensus 620 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (1092)
-....|.++...++|. |.+|+.++-|..++........ ... .+
T Consensus 306 ~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~~--------------------- 352 (781)
T 3v9f_A 306 NNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------SP--------------------- 352 (781)
T ss_dssp STTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----------------------------------
T ss_pred CCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------Cc---------------------
Confidence 1123477788888776 5567766777777765432111 000 00
Q ss_pred CCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccc
Q 001363 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 775 (1092)
Q Consensus 696 ~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~ 775 (1092)
.. ..+.......|.++...++|... .++.++-+..|+......
T Consensus 353 -~~----------------------------~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~------- 395 (781)
T 3v9f_A 353 -TQ----------------------------MNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVA------- 395 (781)
T ss_dssp --C----------------------------CCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEE-------
T ss_pred -cc----------------------------cccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeE-------
Confidence 00 00000023457888888888744 455444566665322110
Q ss_pred cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec--CCCCCeEEEEEcC
Q 001363 776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNP 853 (1092)
Q Consensus 776 ~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~ 853 (1092)
..+.... ......|.+++..++|.+.+...++.+..++..+++...... .....|.+++..+
T Consensus 396 -----~~~~~~~-----------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 396 -----IYNKENR-----------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp -----ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred -----EEccCCC-----------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence 0000000 013467889999888887775546779999987776433221 2346789999887
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCceeeEeeccc-----cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001363 854 HDNNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 928 (1092)
Q Consensus 854 ~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 928 (1092)
++.+ ..|+. +-+..||..+++........ ...|.++...++|.+.+.....| |..||..+++... +..
T Consensus 460 -~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~ 532 (781)
T 3v9f_A 460 -NKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQ 532 (781)
T ss_dssp -TSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECT
T ss_pred -CCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccC
Confidence 6654 44665 55889998876543322212 46799999999888766443345 7888887654222 222
Q ss_pred CCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccC---CCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 001363 929 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 929 ~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
..+. ....|.++...++|.+.+++.+|-+..||..+++... +... ....|.++...++|.+.++ +..| |..+
T Consensus 533 ~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~ 607 (781)
T 3v9f_A 533 YEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCY 607 (781)
T ss_dssp TTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEE
T ss_pred CCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEE
Confidence 2221 1246889999999998777665444888887665332 1111 1346788998889986664 4555 7778
Q ss_pred EcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1006 EASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1006 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+..++... .+....-++.. ....-++..++ + ..|..|+.+| +..++..
T Consensus 608 ~~~~~~~~-~~~~~dGl~~~----~f~~~~~~~~~-~-G~l~~g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 608 ITSKKCFY-TYDHSNNIPQG----SFISGCVTKDH-N-GLIYFGSING-LCFFNPD 655 (781)
T ss_dssp ETTTTEEE-EECGGGTCCSS----CEEEEEEEECT-T-SCEEEEETTE-EEEECSC
T ss_pred ECCCCceE-EecccCCcccc----ccccCceEECC-C-CEEEEECCCc-eEEEChh
Confidence 88766543 33322222222 22223455665 3 4577788887 4556643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-13 Score=169.02 Aligned_cols=250 Identities=10% Similarity=-0.004 Sum_probs=172.4
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+|+..+..++|||||++++.+.+.+| +|++||+.+|+.+.. . + +...+..++||||
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspD 181 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHD 181 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTT
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeC
Confidence 45557889999999996444433333 899999999986642 0 1 1123667999999
Q ss_pred CCEEEEEeCCCE----------------EEEEEccCCCcccc-eEEEcccccceeEEEEecCCCcEEEEEEeC-----CC
Q 001363 408 GSLLGVAYSKHI----------------VQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DK 465 (1092)
Q Consensus 408 g~~las~~~d~~----------------i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~ 465 (1092)
|+.|+.++.++. |++|++.++..... ......|...+..++|||||++ |+.++. +.
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVN 259 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCC
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCcc
Confidence 999999987765 99999988753211 1122235566889999999995 444332 57
Q ss_pred cEEEEECCC------Cc-eeEEEecCCcCeEEEeecccCCccEEEEEecC----CeEEEEEcCCCCc--eEEecCCC--C
Q 001363 466 TIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG--L 530 (1092)
Q Consensus 466 ~i~vwd~~~------~~-~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~--~~~~~~~~--~ 530 (1092)
.|.+||+.+ +. ....+..+...+... |++ +|..|+..+.. +.|.+||+.+... ...+..+. .
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence 899999987 53 466676676666543 443 45555555443 3699999987652 23333333 3
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-e---CCCcEEEEE
Q 001363 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-G---DDHVIKIWD 606 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s---~dg~i~iwd 606 (1092)
.+..+++++++..+++... ++...|++|++.+|+.+..+..+. ..+..+.++|+++.++.. + ..++++.||
T Consensus 337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 6778899877766666654 335678899987888777776654 778889999998777643 2 457899999
Q ss_pred CCCCc
Q 001363 607 MNKVQ 611 (1092)
Q Consensus 607 ~~~~~ 611 (1092)
+.+++
T Consensus 412 ~~tg~ 416 (710)
T 2xdw_A 412 LTKEE 416 (710)
T ss_dssp TTSSS
T ss_pred CCCCc
Confidence 98877
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-12 Score=138.57 Aligned_cols=245 Identities=12% Similarity=0.104 Sum_probs=179.8
Q ss_pred EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-CcEEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001363 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1092)
Q Consensus 349 llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1092)
+|++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 789999999999999999998765 33344 4788999999999998 35677999999 7
Q ss_pred CCcccceEEEccc-ccceeEEEEecCCCcEEEEEEeC-CCcEEEEECCCCceeEEEecC------CcCeEEEeecccCCc
Q 001363 428 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENI 499 (1092)
Q Consensus 428 ~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~ 499 (1092)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+..+... ......+++ .++|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 76555 34443 34688999999999 7777776 778888884 78888777521 122333333 5578
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc--
Q 001363 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-- 577 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-- 577 (1092)
.++++...++.|..||.+ ++.+..+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+......
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 78777776643 4556788899999988764 457999999999999988754311
Q ss_pred -CCceEEEEEcCCCCEEEEEeCC--------CcEEEEEC-CCCceEEEEeCCCCCCCCceEE
Q 001363 578 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 578 -~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
...+..+...++++.+++.+.. +..+++.+ .+|+.+..+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1237788889999888776421 13345555 4777777776665555555544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-13 Score=147.22 Aligned_cols=278 Identities=10% Similarity=-0.010 Sum_probs=190.7
Q ss_pred CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccce
Q 001363 355 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434 (1092)
Q Consensus 355 ~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~ 434 (1092)
.+++|.+||.++++........ . . -.........+++. +++..++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~----~------n---~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-- 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYR----A------N---GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-- 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHH----H------H---SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred CCceEEEEECCCCEEhhhhHhh----h------c---CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence 3789999999998765421000 0 0 00122446777774 45555556667899999999987665
Q ss_pred EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC-----cCeEEEeecccCCccEEEEEe-cC
Q 001363 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD 508 (1092)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~~l~s~~-~d 508 (1092)
++. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .+
T Consensus 79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 333 335688999999985 66666578999999999999887776433 13455666 2 334444443 48
Q ss_pred CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC------ceeEEEEeCCCCeEEEEEeeccccCCceE
Q 001363 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS 582 (1092)
Q Consensus 509 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 582 (1092)
+.|.++|..+.+....+... .....++++|+|++++++..+... .+.|.++|..+++....+.... .....
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~ 228 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS 228 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence 99999999988776665543 345678999999977766432100 2679999999999887765432 23688
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEE----eCCCeEEEEECCCCcee
Q 001363 583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSV 657 (1092)
Q Consensus 583 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iw~~~~~~~~ 657 (1092)
.++++|+++.++++.. .|.+||..+++................++++| ++.++++. ..++.|.+|+.. ++.+
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 9999999999988765 89999999887632111111123467899999 55555555 568999999998 7776
Q ss_pred eecc
Q 001363 658 DAAG 661 (1092)
Q Consensus 658 ~~~~ 661 (1092)
..+.
T Consensus 306 ~~i~ 309 (328)
T 3dsm_A 306 DEFY 309 (328)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-13 Score=165.95 Aligned_cols=246 Identities=11% Similarity=-0.017 Sum_probs=166.1
Q ss_pred CCCCcEEEEEECCCCCEEEEE-----eCCCEEEEEEccCCCcccceEEEcccccce--eEEEEecCCCcEEEEEEeCCCc
Q 001363 394 DPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNV--NDLAFSAPCKQISVITCGDDKT 466 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v--~~~~~s~d~~~l~l~s~~~d~~ 466 (1092)
+|...+..++|||||++||.+ +.+.+|++||+.+|+.+.. .+...+ ..++|+|||+ .|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~~~~~~~~~wspDg~--~l~~~~~d~~ 190 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----DVIEGGKYATPKWTPDSK--GFYYEWLPTD 190 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----CCBSCCTTCCCEECTTSS--EEEEEECCCC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----cccCcccccceEEecCCC--EEEEEEecCC
Confidence 566789999999999999954 3456899999999875511 122222 6899999999 6777777765
Q ss_pred -------------EEEEECCCCc----eeEEEecCCcCeEEEeecccCCccEEEEEecCC----eEEEEEcCCCCceEEe
Q 001363 467 -------------IKVWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDY 525 (1092)
Q Consensus 467 -------------i~vwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~ 525 (1092)
|++|++.++. ++.....|...+..+.++ +||++|+.++.++ .|.+|+..+... ..+
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l 267 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS--RDGKYLFVYILRGWSENDVYWKRPGEKDF-RLL 267 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC--TTSCCEEEEEEETTTEEEEEEECTTCSSC-EEE
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC--CCCCEEEEEEeCCCCceEEEEEcCCCCce-EEe
Confidence 9999999886 333333455677788874 5777887777665 566665544433 333
Q ss_pred cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE---EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcE
Q 001363 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1092)
Q Consensus 526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1092)
..+...+....+ ++|. ++..+.....+..|++||+.++.. ...+..+. ...+..++++ ++..+++...|+..
T Consensus 268 ~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~ 342 (695)
T 2bkl_A 268 VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATS 342 (695)
T ss_dssp EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEE
T ss_pred ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEE
Confidence 334444455555 6777 665554333467899999987753 33333321 2457788888 66777888889988
Q ss_pred EEEECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCc
Q 001363 603 KIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1092)
Q Consensus 603 ~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 655 (1092)
++|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 343 ~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 343 EVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 888654 455555555432 234667788999987774433 4789999998775
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-12 Score=140.13 Aligned_cols=246 Identities=8% Similarity=-0.028 Sum_probs=168.8
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
......+.++...+.+++|+|+|+ +++++..++.|.+||..+++.... ...+...+.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~ 93 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIK 93 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEE
T ss_pred cceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEE
Confidence 445566777777889999999998 788888889999999998875532 223567899999
Q ss_pred ECCCCCEEEEEeCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC------CCcEEEEECC
Q 001363 404 WSPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAV 473 (1092)
Q Consensus 404 ~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~ 473 (1092)
|+|+|+++++...+ +.|.+||..++...... .-..+...+.+++++|+|+ ++++... .+.|..+|..
T Consensus 94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~ 170 (333)
T 2dg1_A 94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD 170 (333)
T ss_dssp ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT
T ss_pred ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCC
Confidence 99999988887666 68999999887533111 1012445789999999998 5665543 3556677766
Q ss_pred CCceeEEEecCCcCeEEEeecccCCccEE-EEEecCCeEEEEEcCCC-CceEE------ecCC-CCceEEEEEccCCCEE
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSL-GARVD------YDAP-GLGCTRMAYSANGRRL 544 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~-~~~~~------~~~~-~~~i~~~~~s~dg~~l 544 (1092)
+++... +..+...+..+++++ ++..+ ++.+.++.|.+||+... ..... .... ...+..++++++|+..
T Consensus 171 ~~~~~~-~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~ 247 (333)
T 2dg1_A 171 FRTVTP-IIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY 247 (333)
T ss_dssp SCCEEE-EEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred CCEEEE-eecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEE
Confidence 555433 323334567788854 66644 55566889999999642 22211 1111 1367889999999977
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccc---cCCceEEEEEcCCCCEEEEEeCCC
Q 001363 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDH 600 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~dg 600 (1092)
++... ++.|.+||. +++.+..+..... +...+..++|+|+++.|++++.++
T Consensus 248 v~~~~----~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 248 VAMYG----QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEET----TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEcC----CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 76643 456999998 5666666654331 011578899999988887766554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-11 Score=132.52 Aligned_cols=285 Identities=11% Similarity=0.055 Sum_probs=195.0
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
+..+...+.+++++|+|+ +.++...++.|.+||.. ++.... . +..+...+.+++++++|+
T Consensus 10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE 69 (299)
T ss_dssp CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence 445556899999999998 56665557899999988 553321 0 223457899999999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcCe
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV 488 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v 488 (1092)
++++...++.|..||.. ++ ... ..+......+..+++.++|. ++++...++.|.+||. +++.... ...+...+
T Consensus 70 l~v~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEEEETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEeCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 88887778889999986 33 221 12223455789999999998 6777777889999998 6554432 22344567
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
..+++. +++.++++...++.|..||. +++.... .......+..++++++|+..++... .+.|..||. +++.
T Consensus 144 ~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 144 SFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEI 215 (299)
T ss_dssp EEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCE
T ss_pred ceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcE
Confidence 888874 46677777777889999998 4443322 3333456889999999986665432 456999999 6664
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
.. +... .....+..++++++++..++...++.|..||. ++. +..+........+.++++ ++|++.++.. .+.+.
T Consensus 216 ~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 216 TE-FKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp EE-EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred EE-EECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 43 3221 12357889999999886666557789999998 454 334433333345788999 8887666654 56777
Q ss_pred EEECCCC
Q 001363 648 ILETPES 654 (1092)
Q Consensus 648 iw~~~~~ 654 (1092)
.++..++
T Consensus 290 ~~~~~~~ 296 (299)
T 2z2n_A 290 KLTLIKD 296 (299)
T ss_dssp EEEEC--
T ss_pred EEEcCcc
Confidence 7776543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-13 Score=143.98 Aligned_cols=288 Identities=14% Similarity=0.114 Sum_probs=194.5
Q ss_pred EEeecCCCceEEEEEcC----CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 339 SMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 339 ~v~~spdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
.....||+++++++-.. ++.|.+.|..+++.+.... ....+ . +++||||++|+++
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-------------------vG~~P-~-va~spDG~~lyVa 95 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-------------------GGFLP-N-PVVADDGSFIAHA 95 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-------------------ECSSC-E-EEECTTSSCEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-------------------CCCCC-c-EEECCCCCEEEEE
Confidence 35667999876666554 6899999999998876421 12233 4 9999999999887
Q ss_pred e----------CCCEEEEEEccCCCcccceEEEcc--c---ccceeEEEEecCCCcEEEEEEe--CCCcEEEEECCCCce
Q 001363 415 Y----------SKHIVQLYAYHGGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSR 477 (1092)
Q Consensus 415 ~----------~d~~i~iwd~~~~~~~~~~~~~~~--h---~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~ 477 (1092)
+ .++.|.+||..+++.+..+. +.. + ...-..++|+|||++ ++.+. .++.|.++|+.+++.
T Consensus 96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 96 STVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEE
T ss_pred cccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcE
Confidence 5 35789999999987665432 211 0 123557999999995 44443 378999999999999
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEec----CCCCce-EEEEEc-cCCCEEEEEecC
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYD----APGLGC-TRMAYS-ANGRRLFSCGTS 550 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~----~~~~~i-~~~~~s-~dg~~l~~~~~~ 550 (1092)
+.++..... ..+.|. ..+.+++.+.||.+.+.++.. ++...... ....++ ....|. ++|++++...
T Consensus 173 v~tI~v~g~----~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-- 245 (386)
T 3sjl_D 173 KRMLDVPDC----YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 245 (386)
T ss_dssp EEEEECCSE----EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred EEEEECCCc----ceeecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--
Confidence 998854221 111222 235677888899999999876 33322111 111222 123554 6887666442
Q ss_pred CCCceeEEEEeCCCCe--EEEEEeec-------cccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCc
Q 001363 551 KEGESFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQ 611 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~ 611 (1092)
.+.|++.|..++. ....+.-. .........++++++++.++.... .+.|.+.|+.+++
T Consensus 246 ---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 246 ---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp ---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred ---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 4569999987664 33333200 000123345677999999988642 2579999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCceeeecccc
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL 663 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 663 (1092)
.+..+.... .+..+++++|++ +|++.. .++.|.++|..+++.+..+...
T Consensus 323 v~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 323 RLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred EEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 999987653 367999999997 666654 4899999999999888877643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-11 Score=136.50 Aligned_cols=203 Identities=10% Similarity=0.011 Sum_probs=141.4
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe
Q 001363 806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 881 (1092)
..++++|||++|++++ ++.|.++| .+++.+.. +.... ++.+.|.+.+.+++.+.||.+.+++. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4688999999998876 36799999 99998877 65322 24555645567777889999999999 8876633
Q ss_pred ec-----cccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC----cCCCCCceEEEEccCCCEE
Q 001363 882 LE-----GHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 882 l~-----~h~~~V-~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~l~~s~dg~~l 951 (1092)
.. ....++ ....+++++..++..+..+.+.+.|+.+........+...... .........++++||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 22 111222 3356777776665556788999999976542221222111100 0000124458899999988
Q ss_pred EEEe-----------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceEEee
Q 001363 952 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 952 a~~~-----------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
.+.. .+.|.++|..+++.+..+..+ ....+++|+|||+ .++++. .++.|.+||+.+++.+.++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 7742 247999999999998886543 3688999999999 777776 4899999999999999774
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-12 Score=137.55 Aligned_cols=204 Identities=13% Similarity=0.078 Sum_probs=142.7
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceeeE
Q 001363 805 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 880 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~ 880 (1092)
...++|+|||+++.++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 44688999999888775 4789999999999999886432 1 233433 566777888899999999876 55432
Q ss_pred eeccc----cCCeE-EEEEc-CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCcCCCCCceEEEEccCC
Q 001363 881 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 881 ~l~~h----~~~V~-~l~~s-pdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~s~dg 948 (1092)
....+ ..++. ..+|. ++|++++ .+.+|.|.+.|+.++.......+... .+... +....+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence 22111 12222 24664 6775554 66789999999987653222222210 11111 235568889999
Q ss_pred CEEEEEe-----------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceEEe
Q 001363 949 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus 949 ~~la~~~-----------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~ 1015 (1092)
+.+.+.. .+.|.++|+.+++.+..+..++ .+.+++|++||+ +|+++. .++.|.++|..+++.+.+
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9988842 1469999999999999877653 688999999997 666654 589999999999999988
Q ss_pred ec
Q 001363 1016 IL 1017 (1092)
Q Consensus 1016 ~~ 1017 (1092)
+.
T Consensus 370 i~ 371 (386)
T 3sjl_D 370 VN 371 (386)
T ss_dssp EC
T ss_pred ec
Confidence 86
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-11 Score=136.32 Aligned_cols=281 Identities=12% Similarity=0.011 Sum_probs=186.3
Q ss_pred eecCCCceEEEEEc-CCC---cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-
Q 001363 341 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1092)
Q Consensus 341 ~~spdg~~llasg~-~dg---~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~- 415 (1092)
...|++++++++-. ... +|.++|..+++.+.. +.....+ .++|||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 44578875444432 223 889999999887643 2222233 899999999999986
Q ss_pred ---------CCCEEEEEEccCCCcccceEEEc--cc---ccceeEEEEecCCCcEEEEEEe--CCCcEEEEECCCCceeE
Q 001363 416 ---------SKHIVQLYAYHGGSDARQQLEID--AH---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 416 ---------~d~~i~iwd~~~~~~~~~~~~~~--~h---~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~ 479 (1092)
.++.|.+||..+.+.+.... +. .+ ...-..++|+|||++ |+.+. .++.|.++| ++++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~--l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCCE--EEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999999876555331 11 00 123457899999994 55544 257899999 9999887
Q ss_pred E-EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-----CCCCc-eEEEEEccCCCEEEEEecCCC
Q 001363 480 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 480 ~-~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~-i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
. +... .. +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 162 ~~i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 5432 21 23333332 45677888999999999 665542221 11112 233456777665554443
Q ss_pred CceeEEEEeCCCCe--EEEEEeecc-------ccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceE
Q 001363 553 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL 613 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~ 613 (1092)
.+.+.+.|..++. .+..+.... ........+.++|+++.++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 3468889987553 222222100 00123445789999998888653 357999999999999
Q ss_pred EEEeCCCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCceeee
Q 001363 614 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 659 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~ 659 (1092)
..+.... ....++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9987553 368999999999 677776 489999999999988766
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-12 Score=141.00 Aligned_cols=238 Identities=11% Similarity=0.056 Sum_probs=168.9
Q ss_pred ecCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445667788999999998 7777888899999999886 33 4556777899999999998 67777777899999
Q ss_pred ECCCCceeEEEecC----CcCeEEEeecccCCccEEEEEec-----------------CCeEEEEEcCCCCceEEecCCC
Q 001363 471 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 529 (1092)
Q Consensus 471 d~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~ 529 (1092)
|..+++........ ...+..+++. ++|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888765443221 1235567774 47778887331 2344444443 4444444555
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeE---EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1092)
.....++|+|||+.+++... ++.|++|++. +++. ...+.. ....+..++++++|+..++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 56789999999999844432 5679999986 5554 333311 23567789999999866555 7889999
Q ss_pred ECCCCceEEEEeCCCCCCCCceEEE-ccCCCEEEEEeCCCeEEEEECCCC
Q 001363 606 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 986 777777775543 788999 5899999998876 4444555544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-12 Score=141.96 Aligned_cols=272 Identities=8% Similarity=0.032 Sum_probs=183.6
Q ss_pred cccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccC
Q 001363 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1092)
Q Consensus 706 ~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1092)
.++++.++|..+.+....................+++. +++.+++...++.+.+||..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~--------------------- 72 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN--------------------- 72 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT---------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc---------------------
Confidence 36778888876543322111000001122345667764 45555566667888887654
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEcCCceeeEEecCCC-----CCeEEEEEcCCCCCEE
Q 001363 786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI 859 (1092)
Q Consensus 786 ~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l 859 (1092)
+++.+.... .......++++++++++++. .++.|.+||..+++....+.... .....+++ . +++++
T Consensus 73 -t~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 73 -TFKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp -TCCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred -ccEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 333233321 23567899999999655555 37999999999999887765432 14556777 3 56555
Q ss_pred EEEe-CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC----------CcEEEEEcCCCceeeeeeeec
Q 001363 860 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT 928 (1092)
Q Consensus 860 asg~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D----------g~I~iwd~~~~~~~~~~~~~~ 928 (1092)
++.. .++.|.++|..+++.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 5554 4889999999999988877643 345789999999988877654 789999998876433 2222
Q ss_pred CCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeee-eccCCCCCEEEEEEec-CCCEEEEE----ECCCcE
Q 001363 929 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSC-DCRMVFTS----FVDGTL 1002 (1092)
Q Consensus 929 ~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~-~~~~h~~~v~~l~fs~-dg~~l~t~----~~Dg~i 1002 (1092)
..+ .....++|+||+++|.++.. .|.+||..+++.... +...+......++++| ++..+++. ..+++|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 14789999999999988655 999999998876432 2222246789999999 55555555 568899
Q ss_pred EEEEcCCCceEEeec
Q 001363 1003 SIHEASNLEVQCRIL 1017 (1092)
Q Consensus 1003 ~vwd~~~~~~~~~~~ 1017 (1092)
.+||.. |+.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 98888776
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.2e-11 Score=127.66 Aligned_cols=237 Identities=11% Similarity=-0.011 Sum_probs=163.2
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001363 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
..+..+++.++|..+++...++.+..|+... . .....++ .....+..++++++|
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----------------------~-~~~~~~~--~~~~~~~~i~~~~~g 110 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKG-----------------------I-IKEYTLP--NPDSAPYGITEGPNG 110 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTS-----------------------C-EEEEECS--STTCCEEEEEECTTS
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCC-----------------------c-EEEEeCC--CcCCCceeeEECCCC
Confidence 3467788889998777766677777766321 1 1111111 134567899999999
Q ss_pred CEEEEEe-CCeEEEEEcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe-eccccCCeEE
Q 001363 815 AYLFSAS-GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTG 891 (1092)
Q Consensus 815 ~~l~~~s-dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~ 891 (1092)
+++++.. ++.|.+||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.+
T Consensus 111 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 187 (299)
T 2z2n_A 111 DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVG 187 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCccee
Confidence 8888765 588999998 5544332 233456789999999 7888877777889999999 6665432 3345567889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceee
Q 001363 892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCL 970 (1092)
Q Consensus 892 l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~ 970 (1092)
+++.++|+++++...++.|.+|+. +++... ..... .. ..+.+++++++|++.++. .++.|..||. +++..
T Consensus 188 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 258 (299)
T 2z2n_A 188 ITKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIPT-PN---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE 258 (299)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECSS-TT---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE
T ss_pred EEECCCCCEEEEccCCceEEEECC-CCcEEE---EECCC-CC---CCceeEEECCCCCEEEeccCCceEEEECC-CCceE
Confidence 999999998887777888999999 554322 21111 11 258899999999977775 5688999998 45433
Q ss_pred eeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
......+...+.++++ ++|+++++.+ .+.+..++..+++
T Consensus 259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 2223345678999999 9998777654 5677778877654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-08 Score=125.79 Aligned_cols=536 Identities=11% Similarity=0.038 Sum_probs=309.2
Q ss_pred CCceEEeecCCCc-eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CCCEE
Q 001363 335 SSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLL 411 (1092)
Q Consensus 335 ~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~l 411 (1092)
..|.++...++|. .+ .|+.++.+..||..+++.... .. ... .. ..-....|.++...+ +|.+.
T Consensus 66 n~I~~i~~d~~g~~lW--igt~~~Gl~~~d~~~~~f~~~-~~---~~~------~~--~~l~~~~i~~i~~d~~~~g~lw 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIW--IATQRAGLNAYNYETQSFSVY-QY---NPE------DP--QSLITNDVTHITSSVQAGKGLW 131 (781)
T ss_dssp SCEEEEEECSSSSEEE--EEESSSCEEEEETTTTEEEEE-CC---CTT------CS--SSCSCSCEEEEEECSSTTSEEE
T ss_pred cccceEEEcCCCCEEE--EEeCCCCcceECCCCCeEEee-cc---ccC------CC--CCcccCcceEEEecCccCCCEE
Confidence 3699999999997 43 355555799999887653321 00 000 00 000124688998887 66554
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcc------cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe---
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--- 482 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~--- 482 (1092)
.++.++-+..||..+++.. .+.. ....|.++...++|. +..++.++-|..||..+++...-..
T Consensus 132 -i~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~ 203 (781)
T 3v9f_A 132 -VCTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQ 203 (781)
T ss_dssp -EEESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC---
T ss_pred -EEECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCC
Confidence 4553334888998765321 1211 124588888888876 4446666568999988775432111
Q ss_pred ----cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCC
Q 001363 483 ----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 483 ----~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.....|.++.. +.++.+. .|+.+ -+.+||..+....... ......|.++...++|...+....
T Consensus 204 ~~~~l~~~~i~~i~~--d~~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-- 277 (781)
T 3v9f_A 204 NPNSLPGNDVRCIYK--DTNGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL-- 277 (781)
T ss_dssp -----CCSSEEEEEE--CTTCCEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS--
T ss_pred CcccCCCCceeEEEE--cCCCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC--
Confidence 11345777765 3455444 45555 5788887654332211 112346889988888876654321
Q ss_pred CCceeEEEEeCCCCeEEEEEe-----------eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe---
Q 001363 552 EGESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--- 617 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--- 617 (1092)
+-|.++|..++....... ........|.++...++|. +-.|+.++-|..++..++.......
T Consensus 278 ---~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~ 353 (781)
T 3v9f_A 278 ---NGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPT 353 (781)
T ss_dssp ---SCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----
T ss_pred ---CCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcc
Confidence 228889988765433221 1112246789999888875 6667777778999987655433211
Q ss_pred ----CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCC
Q 001363 618 ----AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 693 (1092)
Q Consensus 618 ----~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1092)
..-....|.+++..++|. |.+|+.++-|..|+..++... .+..
T Consensus 354 ~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~------------------------------- 400 (781)
T 3v9f_A 354 QMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI-YNKE------------------------------- 400 (781)
T ss_dssp CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE-CC---------------------------------
T ss_pred ccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE-EccC-------------------------------
Confidence 011123477788777776 556676666888876533111 0000
Q ss_pred CCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcc
Q 001363 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1092)
Q Consensus 694 ~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~ 773 (1092)
+.......|.++...++|...+ ++.++-+..++....
T Consensus 401 -----------------------------------~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~------- 437 (781)
T 3v9f_A 401 -----------------------------------NRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK------- 437 (781)
T ss_dssp --------------------------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC-------
T ss_pred -----------------------------------CCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC-------
Confidence 0000234577888877887444 554444555543221
Q ss_pred cccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC-----CCCeEE
Q 001363 774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATS 848 (1092)
Q Consensus 774 ~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~-----~~~i~~ 848 (1092)
. ....... ......|.++...++|.+.+... +.+..+|..+++........ ...|.+
T Consensus 438 ---------------~-~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 438 ---------------K-FQIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp ---------------E-EEECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred ---------------c-EEEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence 1 1111000 01346788999888887666554 67899998876554333222 357899
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc---ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001363 849 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 925 (1092)
Q Consensus 849 l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 925 (1092)
++..+ ++.+.+ |+.++-+..||..+++...-... ....|.++...++|.+.++. .+|.|..||..+++...
T Consensus 500 i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~--- 573 (781)
T 3v9f_A 500 IAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQV--- 573 (781)
T ss_dssp EEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEE---
T ss_pred EEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEE---
Confidence 99988 676555 56544488898877653322111 24578999999898876654 47754888887755322
Q ss_pred eecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeecc--C---CCCCEEEEEEecCCCEEEEEECCC
Q 001363 926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--I---SSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~--~---h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
.....+-. ...|.++...++|.+.+++.+ .|..++..+++... +.. + ..-...++...+||++++ |+.+|
T Consensus 574 ~~~~~gl~--~~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G 648 (781)
T 3v9f_A 574 FQRKEGLP--NTHIRAISEDKNGNIWASTNT-GISCYITSKKCFYT-YDHSNNIPQGSFISGCVTKDHNGLIYF-GSING 648 (781)
T ss_dssp ECGGGTCS--CCCCCEEEECSSSCEEEECSS-CEEEEETTTTEEEE-ECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE
T ss_pred ccccCCCC--CceEEEEEECCCCCEEEEcCC-ceEEEECCCCceEE-ecccCCccccccccCceEECCCCEEEE-ECCCc
Confidence 22222221 135789999999988777644 47778877654332 111 1 111234677788887665 66777
Q ss_pred cEEEEEcC
Q 001363 1001 TLSIHEAS 1008 (1092)
Q Consensus 1001 ~i~vwd~~ 1008 (1092)
+..++..
T Consensus 649 -l~~f~p~ 655 (781)
T 3v9f_A 649 -LCFFNPD 655 (781)
T ss_dssp -EEEECSC
T ss_pred -eEEEChh
Confidence 5556654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-12 Score=136.59 Aligned_cols=246 Identities=9% Similarity=0.000 Sum_probs=175.2
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc-CCe
Q 001363 813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV 889 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V 889 (1092)
.+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++++ +.++.|..||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777776 6999999999999999998766 4789999999 888888 45788999999 899999988653 578
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecC-CCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCC
Q 001363 890 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 966 (1092)
Q Consensus 890 ~~l~~spdg~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~ 966 (1092)
.++.+.+||+++++.+. ++.|..+|.+ ++......+... .+.. .....+++.++|+++++. .++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 7777777763 443322222111 1111 135567889999999985 67899999998
Q ss_pred ceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEE
Q 001363 967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus 967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1046 (1092)
|+.+.++.. ...+.++.+.++|..+++++.+++|..+|..+|+.+.++..... +.. .-..+..++..+ ++..+
T Consensus 155 G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EGV---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BSC---CCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CCc---cccccccceEcC-CCCEE
Confidence 888877543 24566788899999999998888999999999999988863221 110 112345566676 46766
Q ss_pred EEEeCC--------CcEEEEecC-CCCCccccCCCCC
Q 001363 1047 AVGLTN--------GEVYVIEPN-EPGDTWAVLPPDE 1074 (1092)
Q Consensus 1047 ~~~~~d--------g~v~~w~~~-~~~~~~~~~~~~~ 1074 (1092)
++.+.. +..+++++. +.+-.|......+
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~ 264 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVK 264 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTT
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCccc
Confidence 666421 233566663 3333465444333
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=163.88 Aligned_cols=250 Identities=9% Similarity=-0.072 Sum_probs=163.3
Q ss_pred cCCCCceEEeecCCCceEEEEE----cCCCcEEEEecCCCCee-EEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg----~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
+|+..+..++|||||++++.+. +.+.+|++||+.+|+.+ .. . +.+. ....++|||
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp 177 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP 177 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence 5666799999999999644443 33467999999999865 21 0 1111 125789999
Q ss_pred CCCEEEEEeCCCE-------------EEEEEccCCCccc-ceEEEcccccceeEEEEecCCCcEEEEEEeCCC----cEE
Q 001363 407 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK 468 (1092)
Q Consensus 407 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~----~i~ 468 (1092)
||+.|++++.+.. |++|++.++.... .......|...+..+.|||||++ |+.++.++ .|.
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY 255 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence 9999999988765 9999999875321 12122345567889999999995 44444344 677
Q ss_pred EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCC-CCceEEEEEccCC
Q 001363 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG 541 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~-~~~i~~~~~s~dg 541 (1092)
+||..+++ ...+..+...+....+ + ++.+++... .++.|.+||+.+... ...+... ...+..++++ ++
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG 330 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence 77765554 4455556555555554 2 344444444 257899999987653 3333333 4467788887 66
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCceE
Q 001363 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~~ 613 (1092)
..+++... ++...|++++.. ++....+..+. ...+..+.++|+++.++... ..++|++||+.+++..
T Consensus 331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 66666554 234456666654 55555555442 25677788899988776432 3478999999988743
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-12 Score=136.50 Aligned_cols=241 Identities=8% Similarity=-0.046 Sum_probs=166.6
Q ss_pred CceEEeecCCCceEEE-EEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 336 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~lla-sg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
...+++++|+|+ +++ +...++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 778999999998 666 556778999999766543211 11233567889999999966665
Q ss_pred eCCCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
. ++.|.+||..++... .+. .....+..++++++|+ ++++...++.|.+|+..+.............+..+++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765422 122 2235688999999998 7777777889999986655443322233345677887
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001363 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1092)
.+ ++.++++...++.|.+||................+..++++++|..+++... ++.|.+|+..+.........
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence 54 6677777777899999998766544333333356889999999966665532 45699999876544332211
Q ss_pred ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001363 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
. ...+..++++++++.+++...++.|++++....+.
T Consensus 232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 1 25689999999999888888899999999876543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-12 Score=158.95 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=164.0
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-- 466 (1092)
+|...+..++|||||++||.++.+ ..|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344578899999999999988654 4699999999875431 112223468899999 8 4555555443
Q ss_pred ------------EEEEECCCCce--eEEEec--CCcCeEEEeecccCCccEEEEEecCC-----eEEEEEcCCC--CceE
Q 001363 467 ------------IKVWDAVTGSR--TYSFEG--HGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV 523 (1092)
Q Consensus 467 ------------i~vwd~~~~~~--~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~--~~~~ 523 (1092)
|++|++.++.. ...+.. +...+..+.| ++||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 89999988763 223332 3335777777 55788888777554 7999999876 3133
Q ss_pred EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001363 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1092)
Q Consensus 524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1092)
.+..+...+... ++|+|+.|+..+..+..+..|++||+.++ +....+..+. ..+..+.+. ++..+++...|+.
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence 343343344444 35999999888765444678999999885 3333443333 456677777 5566777888888
Q ss_pred EEEEECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCc
Q 001363 602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1092)
Q Consensus 602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 655 (1092)
.++|.+. ++.....+..+. ...+..++++|+++.++.... .+++++||+.+++
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777554 456666665432 234678889999886664332 4789999998775
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-10 Score=124.35 Aligned_cols=281 Identities=10% Similarity=0.025 Sum_probs=191.4
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
......+.+++++++|+ +.++...++.|.+||.. ++.... . +..+...+..+++.++|++
T Consensus 16 ~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l 75 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDI 75 (300)
T ss_dssp SSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCE
T ss_pred CCCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCE
Confidence 33445889999999998 66666677899999987 554321 1 2234467999999999998
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE-EEecCCcCeE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVY 489 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~ 489 (1092)
.++...++.|..||.. ++. . ...+......+.++++.++|+ ++++...++.|..||.. ++... .+......+.
T Consensus 76 ~v~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 76 WFTENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp EEEETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred EEEecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 8877778889999988 543 2 112333346789999999998 67777668899999987 65542 2232345677
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
.+++. +++.+.++...++.|..++. .++... ........+..+++.++|+..++... .+.|..||. +++..
T Consensus 150 ~i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~ 221 (300)
T 2qc5_A 150 FITLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEIS 221 (300)
T ss_dssp EEEEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEE
T ss_pred eEEEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEE
Confidence 88874 46677776666888999988 333322 22233456889999999986665432 456999998 55544
Q ss_pred EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001363 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
...... ....+.+++++++++..++...++.|..|+. ++... .+........+.+++++++|++.++.. . .|..
T Consensus 222 ~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~ 295 (300)
T 2qc5_A 222 EYDIPT--PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGK 295 (300)
T ss_dssp EEECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred EEECCC--CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence 321111 1356889999999986666656789999998 45443 333332334578999999998665544 4 6666
Q ss_pred EEC
Q 001363 649 LET 651 (1092)
Q Consensus 649 w~~ 651 (1092)
++.
T Consensus 296 ~~p 298 (300)
T 2qc5_A 296 LNL 298 (300)
T ss_dssp EEE
T ss_pred eCC
Confidence 664
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-11 Score=134.90 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=143.4
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe-
Q 001363 806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK- 881 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~- 881 (1092)
..++|+|||+++.++. ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||.+.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4568899999888875 36899999999999888764321 333442446667777888888888866655432
Q ss_pred ---eccccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc-C---CCCCceEEEEccCCCEEEE
Q 001363 882 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM-T---LAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 882 ---l~~h~~~V-~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~l~~s~dg~~la~ 953 (1092)
+.....++ ..+.|+++++.++..+..+.|.+.|+.+........+....... . .......++++||++.+.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22122222 23578999998888888899999999765432211211110000 0 0012334799999998777
Q ss_pred Ee-----------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceEEee
Q 001363 954 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 954 ~~-----------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
.. .+.|.++|..+.+.+..+..+ ....++.|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 247999999999999887544 3588999999999 888887 5899999999999999887
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8e-12 Score=132.99 Aligned_cols=240 Identities=10% Similarity=-0.057 Sum_probs=166.5
Q ss_pred cEEEEEECCCCCEEE-EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001363 398 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 398 ~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
...+++++++|++++ +.+.++.|.+||..++.... ....+...+.+++++++|+ ++++.. ++.|.+||..++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 788999999999777 44678899999987653211 1122335688999999998 566655 8899999977654
Q ss_pred eeEEEe-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001363 477 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 477 ~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
. ..+. .....+..+++.+ ++.++++...++.|.+|+..+.............+..++++++|+.+++... .+
T Consensus 99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~ 171 (270)
T 1rwi_B 99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 171 (270)
T ss_dssp C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence 3 3332 2335678888854 6677777778899999976554443322223345778999999986665532 45
Q ss_pred eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC
Q 001363 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1092)
.|.+||..++.......... ..+..+++++++..+++...++.|.+|+..+..... ... .+...+..++++++|+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT 246 (270)
T ss_dssp EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence 79999988776543322222 568899999999766777678899999987655433 221 2224578999999999
Q ss_pred EEEEEeCCCeEEEEECCCCc
Q 001363 636 LLAVIANENRIKILETPESN 655 (1092)
Q Consensus 636 ~l~~~~~dg~i~iw~~~~~~ 655 (1092)
++++...++.|++++....+
T Consensus 247 l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCEEEEEcCCCcc
Confidence 88888889999999987553
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=137.35 Aligned_cols=281 Identities=11% Similarity=0.093 Sum_probs=191.7
Q ss_pred CCCceEEEEEcCC----CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe----
Q 001363 344 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 415 (1092)
Q Consensus 344 pdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~---- 415 (1092)
|++++++++...+ ++|.+.|..+++.+..... -..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-------------------G~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-------------------GFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------------------CSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-------------------CCCC--ceEECCCCCEEEEEecccc
Confidence 5666666665544 7999999999988865221 2234 799999999998886
Q ss_pred ------CCCEEEEEEccCCCcccceEEEc--c---cccceeEEEEecCCCcEEEEEEe--CCCcEEEEECCCCceeEEEe
Q 001363 416 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 416 ------~d~~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~~~ 482 (1092)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987665432 22 0 0123457899999994 55444 36889999999999998886
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE----ecCCCCc-eEEEEEccCCCEEEEEecCCCCceeE
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.... ....+... ..+++.+.||.+.+.+....+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4221 12222222 5667778888888888854443321 1111222 123567899988777654 4569
Q ss_pred EEEeCCCCeEE--EEEeec-----c--ccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceEEEEeC
Q 001363 558 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 558 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~ 618 (1092)
++.|..++... ..+... . ........++++|+++++++... .+.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998665432 111110 0 00011223689999998887642 35799999999999999875
Q ss_pred CCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCceeeec
Q 001363 619 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA 660 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 660 (1092)
.. ....++|+|||+ ++++.. .++.|.++|..+.+.+..+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 53 257899999999 888887 5899999999999888765
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.8e-12 Score=152.81 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=158.2
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+|...+..++|||||++++.+.+.+| +|++||+.+|+.+.. . + +...+..++||||
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD 219 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN 219 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC
Confidence 34447889999999996544443333 599999999987642 0 0 1122356899999
Q ss_pred CCEEEEEeCCCE--------------EEEEEccCCCcccc-eEEEcccccceeEEEEecCCCcEEEEEEeC-----CCcE
Q 001363 408 GSLLGVAYSKHI--------------VQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTI 467 (1092)
Q Consensus 408 g~~las~~~d~~--------------i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~~i 467 (1092)
+.|+.++.++. |++|++.++..... ......+...+..+.|||||++ |+..+. ...|
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTV 296 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceE
Confidence 99998876543 88999987653211 1112233345889999999994 444443 3489
Q ss_pred EEEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEec----CCeEEEEEcCCCC-c-eEEecCCCCceEEEEEcc
Q 001363 468 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-A-RVDYDAPGLGCTRMAYSA 539 (1092)
Q Consensus 468 ~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~-~~~~~~~~~~i~~~~~s~ 539 (1092)
++||+.++ ++...+..+...+....+ +++..|+..+. ++.|.+||+.+.. . ...+..+...+..++++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~- 372 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA- 372 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-
T ss_pred EEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-
Confidence 99999887 425566556555544432 35567776665 3459999988742 2 33334444456667776
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCce
Q 001363 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 612 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 612 (1092)
++..+++... ++...|++++.. +...+.+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 373 ~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4455555544 335556677764 55555555432 35788899999987666432 447899999988873
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-10 Score=126.74 Aligned_cols=250 Identities=13% Similarity=0.098 Sum_probs=164.9
Q ss_pred ccCCCCceEEeecCCCceEEEE-------EcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llas-------g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.+.-....+++|+++|+ ++++ +..++.|.+||..+++.... .. ....++...+..++
T Consensus 14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~--------------~~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK--------------PEVNGYGGIPAGCQ 77 (314)
T ss_dssp ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE-EC--------------CEETTEECCEEEEE
T ss_pred hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee--------------cccCCCCCCCceEE
Confidence 44444788999999997 6666 56678999999888875421 00 00122446789999
Q ss_pred ECCC-CCEEEEEeCCCEEEEEEccCCCcccc-eEEEcc-cccceeEEEEecCCCcEEEEEEeCC---------------C
Q 001363 404 WSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------K 465 (1092)
Q Consensus 404 ~spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d---------------~ 465 (1092)
++++ |+++++.. .+.|.+||.. ++.... .....+ ....+.++++.++|+ ++++...+ +
T Consensus 78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence 9999 76555544 4469999988 653211 000011 224588999999998 56665544 5
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeec--ccCCccEE-EEEecCCeEEEEEcC-CCC-----ceEEecCCC-CceEEE
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFI-FSISVDGKIKAWLYD-SLG-----ARVDYDAPG-LGCTRM 535 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~~l-~s~~~dg~i~vwd~~-~~~-----~~~~~~~~~-~~i~~~ 535 (1092)
.|..||.. ++..... .+......++++ .+++++.+ ++...++.|.+|+++ .+. ....+..+. .....+
T Consensus 154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 67777765 5543332 333445677775 11566555 444568899999986 222 112223232 567889
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 001363 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 609 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~ 609 (1092)
+++++|+..++... ++.|.+||..+++.+..+..+. ..+.+++++|+++.|+++ ..++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999988777643 4569999998787777666544 678999999999966555 4567899998764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-09 Score=116.65 Aligned_cols=243 Identities=12% Similarity=0.027 Sum_probs=168.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+......+.++++.++|+..++...++.|.+||.. ++... ..+..+...+.++++.++|. ++++...++.|..||
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLS 89 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEEC
Confidence 33456788999999999988877778899999988 54221 12333446789999999998 667666678899999
Q ss_pred CCCCceeE-EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCCceEEEEEccCCCEEEEEec
Q 001363 472 AVTGSRTY-SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
.. ++... .+......+..+++. +++.++++...++.|..+|.. ++.. .........+..+++.++|+..++...
T Consensus 90 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred CC-CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence 87 65432 222234567888875 466777777778899999887 3333 223334457889999999996555432
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
.+.|..+|. +++... +.... ....+..+++.+++...++....+.|.+|+. +++.... ........+.+++
T Consensus 166 ----~~~i~~~~~-~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~ 236 (300)
T 2qc5_A 166 ----NNSIGRITN-TGKLEE-YPLPT-NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAIT 236 (300)
T ss_dssp ----TTEEEEECT-TCCEEE-EECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEE
T ss_pred ----CCeEEEECC-CCcEEE-eeCCC-CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEE
Confidence 456999998 565543 32211 1256889999999876666666778999998 5554433 2222234578899
Q ss_pred EccCCCEEEEEeCCCeEEEEECC
Q 001363 630 FNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
++++|++.++...++.|..|+..
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECTT
T ss_pred ECCCCCEEEeccCCCeEEEECCC
Confidence 99999877666667899999983
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-10 Score=127.00 Aligned_cols=242 Identities=12% Similarity=0.012 Sum_probs=164.0
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
...+.++|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999998 788888789999999988765532 112 22333 9999999999998
Q ss_pred eCCC--EEEEEEccCCCcccceEEEcc-cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE----EecCCcC
Q 001363 415 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP 487 (1092)
Q Consensus 415 ~~d~--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~----~~~~~~~ 487 (1092)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 7765 799999887654332111112 4456889999995552 44466788999999987764322 2222222
Q ss_pred e--EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---------------CCceEEEEEccCCCEEEEEecC
Q 001363 488 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 488 v--~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
- ..++|++. ++.++++...++.|+.|+.+.. ...+.+. -.....++++++|+.+++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 27888653 3567777778899999987654 2222221 12478899999999655543
Q ss_pred CCCceeEEEEeCCCCeEEEEEeecc------------ccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
.+++.|+.|+..++.. ..+.++. ........+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0266799999877764 4444431 00245889999999877777777888887765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-10 Score=125.22 Aligned_cols=245 Identities=9% Similarity=0.064 Sum_probs=163.6
Q ss_pred cEEEEEEecCCcEEEE-------eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC-CCCCCCCeeE
Q 001363 736 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT-DSNSQEAVPC 807 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~-------~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~-~~~~~~~v~~ 807 (1092)
...+++|+++|..+++ ...++.|.+|+.... ... ....+ ..++...+.+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----------------------~~~-~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----------------------KKT-VICKPEVNGYGGIPAG 75 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----------------------CEE-EEECCEETTEECCEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----------------------cEE-EEEecccCCCCCCCce
Confidence 4568899999987777 466777887764332 211 11000 0013356889
Q ss_pred EEEecC-CCEEEEEeCCeEEEEEcCCceeeEE-ecC----CCCCeEEEEEcCCCCCEEEEEeCC---------------C
Q 001363 808 FALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------S 866 (1092)
Q Consensus 808 ~~~s~d-g~~l~~~sdg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~lasg~~d---------------g 866 (1092)
++++++ |+++++..++.|.+||.. ++.... ... +...+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776666656689999988 665433 221 123578999999 78887776655 5
Q ss_pred cEEEEEcCCceeeEeeccccCCeEEEEEc----CCCCEEE-EEeCCCcEEEEEcC-CCceeeeeeeecCCCCcCCCCCce
Q 001363 867 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILV-SSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~l~-s~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
.|..|+.. ++... +..+......++|+ ||++.|. +...++.|.+|+++ .++...........+... ..+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD 229 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence 67777766 55433 33344567889999 9997654 44567899999987 444322223333332210 1467
Q ss_pred EEEEccCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEEcCCC
Q 001363 941 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1010 (1092)
Q Consensus 941 ~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~-~~Dg~i~vwd~~~~ 1010 (1092)
.++++++|+++++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+++ ..++.|..|++...
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 89999999988874 6788999999877766553 3455789999999999955544 45678999998753
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-10 Score=124.39 Aligned_cols=256 Identities=9% Similarity=0.040 Sum_probs=169.9
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCce-----------eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 872 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1092)
.+..+++++...++++|+...+.+|++++.+ ..... .+.. |+.++| |+.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 6889999999999999998888889976544 11222 3555 999999 57889988 889999999
Q ss_pred cCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEE
Q 001363 873 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1092)
Q Consensus 873 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 952 (1092)
+.+.........|..++.++.+.+.. +++++.||.|.+||++++.... +. ..|++++|||+| ..+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~---------~~Vs~v~WSpkG-~~v 177 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA---------QNVTSFDVTNSQ-LAV 177 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE---------ESEEEEEECSSE-EEE
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc---------CCceEEEEcCCc-eEE
Confidence 98876666677788889988887653 8889999999999999765322 11 259999999999 444
Q ss_pred EEeCCcEEEEEcCCcee--eeeec-----c---CCCCCEEEEEEecCCCEEEEEECC-----------CcEEEEEcCCCc
Q 001363 953 LVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSFVD-----------GTLSIHEASNLE 1011 (1092)
Q Consensus 953 ~~~d~~i~lwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~t~~~D-----------g~i~vwd~~~~~ 1011 (1092)
...||++++|+...++. ...+. . +|...|.++.|.+++.++++-+.. -.++|-....+.
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~ 257 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGS 257 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCC
Confidence 57899999999887775 44431 1 478899999999999999874431 145666633333
Q ss_pred eEE-ee-ccccccCCCCccccccceE-EEECCCCCCEEEEEeCCC-cEEEEecCCCCCccccCCCCCcccCCCCCCcc
Q 001363 1012 VQC-RI-LSTAYLRPTTSCLHVYPHA-IAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSE 1085 (1092)
Q Consensus 1012 ~~~-~~-~~~~~~~~~~~~~~v~~~~-~~~~p~d~~~l~~~~~dg-~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1092)
... .+ ...............+... -.|.|+..+++++++.-. .|.+++-. . ...+..|..+++.+.+.+
T Consensus 258 ~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~~----~-~~~~~~Ds~Ra~lPl~~~ 330 (388)
T 1xip_A 258 ASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK----Q-VIEPSQDSERAVLPISEE 330 (388)
T ss_dssp EEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS----S-EEEESSGGGCCBCCBCTT
T ss_pred ceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEeccc----c-EEeecCccccceeccCCC
Confidence 211 11 1000011000011112111 235443335666665544 57777532 1 233445567777766665
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-10 Score=138.36 Aligned_cols=252 Identities=11% Similarity=0.052 Sum_probs=164.9
Q ss_pred cCCCCceEEeecCCCceEEEEEcC----CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+|...+..++|||||++++.+.+. ..+|+|||+.+|+.+.. . + +......++|+ |
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-G 184 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-T
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-C
Confidence 456678899999999965444333 35799999999986542 1 1 11112467899 9
Q ss_pred CCEEEEEeCCC-------------EEEEEEccCCCcccc-eEEEcc-cccceeEEEEecCCCcEEEEEEe---CCCcEEE
Q 001363 408 GSLLGVAYSKH-------------IVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV 469 (1092)
Q Consensus 408 g~~las~~~d~-------------~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~v 469 (1092)
|+.|+.++.+. .|++|++.++..-.. +..... |...+..+.|||||+++ +++.+ .++.|++
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV 263 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence 99999998773 499999987643211 111223 44557889999999963 33333 2358999
Q ss_pred EECCCCc-eeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCc--eEEecCCCCceEEEEEccCCCE
Q 001363 470 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 470 wd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
||+.++. ....+..+....... +.+. ++.+++....+ +.|..+++.+... ...+..+...+. .|+++++.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~ 339 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY 339 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence 9998774 455666666655544 3322 33444555443 5799999987654 234444444444 89999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceE
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL 613 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~~~~~ 613 (1092)
|+..... ++...|++||..++.. ..+.... ...+..+.++++++.++....+ ++++.||+.+++..
T Consensus 340 lv~~~~~-~g~~~l~~~d~~g~~~-~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 340 LFAEYMV-DATARVEQFDYEGKRV-REVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEEE-TTEEEEEEECTTSCEE-EEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEEE-CCeeEEEEEECCCCee-EEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8877653 3356799999885543 4443222 2457777788888877665444 78999999887643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.31 E-value=8.7e-10 Score=118.76 Aligned_cols=229 Identities=10% Similarity=0.050 Sum_probs=150.2
Q ss_pred cEEEEEEecCCcEE-EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001363 736 KISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
-..+..|++++..+ ++...++.|..|+... +. ..... ....+.+++++++|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~-~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQ-VQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CC-EEEEE-----CSSCEEEEEEBTTS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------Cc-EEEEe-----CCCceEEEEECCCC
Confidence 34578889865544 4445567777776433 22 11111 34568899999999
Q ss_pred CEEEEEeCCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCCCCCEEEEEeCC---------CcEEEEEcCCceeeEe
Q 001363 815 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARSSEVISK 881 (1092)
Q Consensus 815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~~~~~~~ 881 (1092)
+++++ .++.|.+||..+++....... ....+..++++| +++++++.... ..-.||.+.....+..
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 143 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK 143 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE
Confidence 95554 577899999988765433221 123578899999 78877654322 2345555543222233
Q ss_pred eccccCCeEEEEEcCCCCEE-EEEeCCCcEEEEEc--CCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCC
Q 001363 882 LEGHSKRVTGLVFSDALNIL-VSSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 957 (1092)
Q Consensus 882 l~~h~~~V~~l~~spdg~~l-~s~s~Dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~ 957 (1092)
+..+......++|+||++.| ++.+.++.|.+|++ .++.......+....... ..+..+++.++|++.++. ..+
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETTT
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCCC
Confidence 33344557889999999876 45566788999998 455443333333332211 246789999999988775 457
Q ss_pred cEEEEEcCCceeeeeeccCCCCCEEEEEEe-cCCCEEEEEEC
Q 001363 958 HLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV 998 (1092)
Q Consensus 958 ~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~ 998 (1092)
.|..||..+++.+..+. .+...+++++|. ||++.|+.++.
T Consensus 221 ~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence 79999999898877643 445789999999 89887776654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-09 Score=117.84 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=155.9
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
..+..-..+..|+|++..++.+...++.|..||..+++.... .....+.+++++|+|++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l 67 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGY 67 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCE
Confidence 334445668999997666888888889999999998764321 13467999999999996
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcc--cccceeEEEEecCCCcEEEEEEeC---------CCcEEEEECCCCceeE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD---------DKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~~~---------d~~i~vwd~~~~~~~~ 479 (1092)
+++ . ++.|.+||.++++... ...... ....+..++++|+|+ ++++... .....||.+.....+.
T Consensus 68 ~v~-~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 142 (297)
T 3g4e_A 68 VAT-I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK 142 (297)
T ss_dssp EEE-E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred EEE-E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence 555 3 4569999998865321 111111 224588999999998 4444322 1234555544322233
Q ss_pred EEecCCcCeEEEeecccCCccEE-EEEecCCeEEEEEcC--CCCce-----EEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~-----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.+..+....+.++|++ +++.| ++.+.++.|.+|+++ ++... ..+.........+++.++|+..++...
T Consensus 143 ~~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-- 218 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-- 218 (297)
T ss_dssp EEEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET--
T ss_pred EEeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC--
Confidence 3333444567888854 55555 556668899999984 33211 122222346788999999987766543
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeC
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 598 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 598 (1092)
.+.|..||..+++.+..+..+. ..+.+++|. |+++.|++++.
T Consensus 219 --~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 --GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp --TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred --CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence 4569999999999988887765 678999998 88888777654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.2e-10 Score=119.99 Aligned_cols=240 Identities=12% Similarity=0.041 Sum_probs=161.2
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...+..|..+.......+|+|+|+.++.++..++.|..|+. +++.. . +..+...+..++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~ 92 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNA 92 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceee
Confidence 33445555566688899999999878889888999999998 45422 1 223566789999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEccc-ccceeEEEEecCCCcEEEEE----EeC-------------CC
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DK 465 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s----~~~-------------d~ 465 (1092)
++++|+++++...++.|.+|+.. ++.........+. ...+.++++.++|+ ++++ |.. .+
T Consensus 93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 93 VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCC
Confidence 99999977776666789999986 4422111111111 13477899999998 6665 332 25
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCCc---eEEecCCCCceEEEE
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMA 536 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~---~~~~~~~~~~i~~~~ 536 (1092)
.|..||..+++..... .....+.++|+ +|+..|+.+... +.|.+|++..... .............++
T Consensus 170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp EEEEECSSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred eEEEEcCCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence 6888887777654433 33456778885 466777766655 7899999875431 111122233455789
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcE
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1092)
+.++|+..++. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++..
T Consensus 246 ~d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 246 VDRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp ECTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTEEE
T ss_pred ECCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCeEE
Confidence 99999955443 2 2 3999998 577777766543 47889999999989888876533
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-09 Score=122.70 Aligned_cols=248 Identities=11% Similarity=0.002 Sum_probs=163.6
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcCCceee
Q 001363 803 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 879 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~ 879 (1092)
.....++++++++++++.. ++.|++||..++......... .... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 3567899999999776665 488999999988776555442 2333 99999 888888888766 7999998776544
Q ss_pred Eee----ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce-EEEEccCCCEEEEE
Q 001363 880 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET-HIQFHKDQTRFLLV 954 (1092)
Q Consensus 880 ~~l----~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~s~dg~~la~~ 954 (1092)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+... .... .++|+|++..|.++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence 343 224566788999995555555777889999999876532211110 111111 0113 99999965544443
Q ss_pred --eCCcEEEEEcCCceeeeeeccCC---------------CCCEEEEEEecCCCEEEEEE-CCCcEEEEEcCCCceEEee
Q 001363 955 --HETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 955 --~d~~i~lwd~~~~~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
.++.|+.|+.... +.. ..++ -.....++|+++|+++++-+ .+++|+.|++.+|......
T Consensus 285 d~~~~~I~~~~~~g~--~~~-~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEW-FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp ETTTTEEEEECTTCC--EEE-EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEE-EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 5678999987643 222 1122 13578999999999888777 7899999998888754332
Q ss_pred cccc---ccCCCC-ccccccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1017 LSTA---YLRPTT-SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1017 ~~~~---~~~~~~-~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
.... +..... ...--.|..++++|+ +.++++-..++.|+.+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 2100 000000 001134678999994 777888888888988765
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-10 Score=128.86 Aligned_cols=273 Identities=11% Similarity=0.015 Sum_probs=174.8
Q ss_pred CCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .++-|.. ...+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~----------~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQSG----------NAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCCS----------SCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCccc----------CcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 666653 2343666666555322 2211110 0224667899999999998766
Q ss_pred EEeC-----CCEEEEEEccCCCcccceEEEc----ccccceeEEEEecCCCcEEEEEEe---CCCcEEEEECCCCceeEE
Q 001363 413 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 413 s~~~-----d~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~vwd~~~~~~~~~ 480 (1092)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999988644422 221 12345689999987553 456655 688999999999987776
Q ss_pred EecCCcCeE-EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 481 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 481 ~~~~~~~v~-~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
+.+|..... ...+ ..++..+.+.+.+|.++.|. ..+..++++|||+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 655432211 0222 22456677777888876663 135789999999998887642 224666
Q ss_pred EeCC---CCe-----EEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 560 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 560 wd~~---~~~-----~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
++.. .+. ... ...++. .....++++++|..+++...++.|.+||..+++........ .......++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va 297 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN 297 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence 5532 111 000 111222 34567899999998888888999999998666654433322 223467899
Q ss_pred EccCCCEEEEEeCCCeE
Q 001363 630 FNKNGTLLAVIANENRI 646 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i 646 (1092)
|.++++++++....+.+
T Consensus 298 ~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ECTTSCEEEEECCGGGS
T ss_pred ECCCCcEEEEeCccccc
Confidence 99998877777654433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-10 Score=124.84 Aligned_cols=272 Identities=10% Similarity=-0.032 Sum_probs=174.2
Q ss_pred eEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe--------
Q 001363 348 TLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-------- 415 (1092)
Q Consensus 348 ~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-------- 415 (1092)
+++++...++ +|.+.|..+++.+.+.. .+ ..+ .+++||||++++++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG-~~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GA-FLS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------EC-TTC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CC-CCC--ceEECCCCCEEEEEccccccccc
Confidence 4556655555 88899999999887522 12 234 799999999999986
Q ss_pred --CCCEEEEEEccCCCcccceEEEcc-c----ccceeEEEEecCCCcEEEEEEe--CCCcEEE--EECCCCceeEEEecC
Q 001363 416 --SKHIVQLYAYHGGSDARQQLEIDA-H----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGH 484 (1092)
Q Consensus 416 --~d~~i~iwd~~~~~~~~~~~~~~~-h----~~~v~~~~~s~d~~~l~l~s~~--~d~~i~v--wd~~~~~~~~~~~~~ 484 (1092)
.++.|.+||..+++.+..+. +.+ . ......++|+|||++ ++.+. .+..|.+ +|..+ +.++...
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36789999999998766432 220 0 123568999999995 44443 3567888 99877 4555321
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-----CCceE----EecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
+. ..+.+.+. ..+++.+.||.+.+.|+.+ ++... .+.....+. . ++++..++..+. +
T Consensus 166 -~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 166 -SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp -SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred -Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 11 12223322 3556677788888888876 22111 011112233 3 666666665543 3
Q ss_pred eEEEEeCCCCe--EEEEEeec-------cccCCceEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCceEEEEe
Q 001363 556 FLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 556 ~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~ 617 (1092)
.+.+.|..++. .+..+... .........+.++|++++++++.. ++.+.++|+.+.+.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 58888886542 22222110 000011122679999999887543 2356699999999998887
Q ss_pred CCCCCCCCceEEEccCCCE-EEEEe-CCCeEEEEECCCCceeeecccc
Q 001363 618 AGGGLPENPRICFNKNGTL-LAVIA-NENRIKILETPESNSVDAAGVL 663 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~-l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 663 (1092)
... ....++|+|||++ +++.. .++.|.++|+.+.+.+..+...
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 553 3688999999984 55555 5899999999999888877644
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-10 Score=137.77 Aligned_cols=245 Identities=9% Similarity=0.054 Sum_probs=160.3
Q ss_pred CCCCcEEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC---
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 465 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--- 465 (1092)
+|...+..++|||||++||.+. ....|++||+.+|+.+.. .+ +......++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~--~~~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PL--KDVKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EE--EEEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--cc--CCceeccEEEe-CCC--EEEEEEecCccc
Confidence 4566788999999999999653 235799999999875431 11 11123678999 999 566665553
Q ss_pred ----------cEEEEECCCCce----eEEEec-CCcCeEEEeecccCCccEEEEEec----CCeEEEEEcCCCC-ceEEe
Q 001363 466 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 525 (1092)
Q Consensus 466 ----------~i~vwd~~~~~~----~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~~~~~ 525 (1092)
.|++|++.++.. +..... |...+.++.+ ++||++|+.... +..|.++|+.+.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987753 222233 4445666777 557777654433 2479999988764 33444
Q ss_pred cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCC---
Q 001363 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--- 600 (1092)
Q Consensus 526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--- 600 (1092)
..+....... ++++|..++..+........|+.+|+.++.. ...+..+. ..+. .|++++++|+....++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 6788887776665433367899999988754 24455544 3343 8889999888766443
Q ss_pred cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC----CeEEEEECCCCc
Q 001363 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 655 (1092)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~~ 655 (1092)
.|++|++..+ ....+..... ..+..+.+++++..++....+ +++..||+.+++
T Consensus 351 ~l~~~d~~g~-~~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGK-RVREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSC-EEEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCC-eeEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 6889998754 4455543321 234566677888877766554 889999987764
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-05 Score=93.80 Aligned_cols=532 Identities=9% Similarity=0.001 Sum_probs=288.7
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeE
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
+|+.+ ....|+..++++..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 45554 45568899998654211 11111 2345779999997764 556666788999999876544333332224466
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
.+++.+. ++.+.++-...+.|.+.+++...........-.....+++.|....|+..-.. ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 7777543 34566666677889999987665444443444567899999976666655321 14568888876554333
Q ss_pred EEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001363 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
.... ......+++++++..|+.+. ..+.|..+|+..... ..+... ......+++.. +.++++-...+.|..
T Consensus 161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 3322 25788999999887777765 567899999876544 333222 22345777765 445555555788988
Q ss_pred EECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001363 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~ 728 (1092)
.|..+++....+.........+.+....... + .+.....++. + ..+-+-... ....|. -
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~-------~n~C~~~ng~----C---~~~C~~~~~--~~~~C~---C 291 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--G-------WNECASSNGH----C---SHLCLAVPV--GGFVCG---C 291 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC--C-------CCTTTTTGGG----C---SSEEEEETT--TEEEEE---C
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc--c-------ceEeccCCCC----c---chhhhcCCC--CCeeEE---c
Confidence 8877775555444333333333322111000 0 0000000000 0 000000000 000000 0
Q ss_pred CC--ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001363 729 PS--KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 729 ~~--~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~ 806 (1092)
+. ........|. +....++.+. ...|+-..+... ... -..... ..-..+.
T Consensus 292 ~~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~~~--------------------~~~-~~~l~~---~~~~~~~ 343 (628)
T 4a0p_A 292 PAHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVIDEQ--------------------QSP-DIILPI---HSLRNVR 343 (628)
T ss_dssp STTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCCTT--------------------CCC-CEECCC---TTCSCEE
T ss_pred CCCcEecccCCcCc---cccceeeeec-cceEEEEecccc--------------------cCc-eEEEEe---hhcCCce
Confidence 00 0000001111 1112222222 223322221110 000 001111 1234577
Q ss_pred EEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001363 807 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
.++|.+.+..|..+. .+.|+.++.........+.. ....+..+|+....+++..+-+..+.|.+.++. |+.
T Consensus 344 ~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~ 422 (628)
T 4a0p_A 344 AIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRS 422 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCE
T ss_pred EEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCe
Confidence 899999877777776 47788888764433333332 234678999988335555666677899999987 444
Q ss_pred eEee-ccccCCeEEEEEcC-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE
Q 001363 879 ISKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1092)
Q Consensus 879 ~~~l-~~h~~~V~~l~~sp-dg~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 954 (1092)
...+ ........+|++.| .|.++++-.... .|...+++...... .+.. .. .....+++.+++..|..+
T Consensus 423 ~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~~---~l---~~P~gla~D~~~~~LYw~ 494 (628)
T 4a0p_A 423 VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFFS---GL---SKPIALALDSRLGKLFWA 494 (628)
T ss_dssp EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EECS---SC---SCEEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEec---cC---CCccEEEEeCCCCEEEEE
Confidence 4443 33456789999999 555555543332 46666665432111 1211 11 256899999998888775
Q ss_pred e--CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEee
Q 001363 955 H--ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 955 ~--d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
. .+.|..+++. |.....+.........+++... +..+++=.....|...|..+|+....+
T Consensus 495 D~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 495 DSDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp ETTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred eCCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 4 4678889985 4444444433344567777654 445555545677888888877654443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-10 Score=123.79 Aligned_cols=196 Identities=11% Similarity=0.005 Sum_probs=128.0
Q ss_pred eEEEEecCCCEEEEEe---CCeEEE--EEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-----
Q 001363 806 PCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----- 875 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----- 875 (1092)
..++++|||++++++. +..+.+ +|..+ +.++.... . ..+.|++...+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3578888988888875 256888 88877 34443211 1 223343455666677888888889887
Q ss_pred ceeeEe----eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCcCCCCCceEEEEc
Q 001363 876 SEVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFH 945 (1092)
Q Consensus 876 ~~~~~~----l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~s 945 (1092)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+........+... .+... .....++|+
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s 272 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL 272 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence 543321 11122343 3 667777666667 8999999976432211111111 01000 122337899
Q ss_pred cCCCEEEEE-e-C--------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceE
Q 001363 946 KDQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus 946 ~dg~~la~~-~-d--------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~ 1013 (1092)
||++.+.++ . . +.+.++|+.+++.+..+..+. ....++|+|||+ .+++.. .+++|.++|+.+++.+
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 999988874 3 2 357799999999988765443 688999999998 456666 5899999999999999
Q ss_pred Eeec
Q 001363 1014 CRIL 1017 (1092)
Q Consensus 1014 ~~~~ 1017 (1092)
.++.
T Consensus 351 ~~I~ 354 (368)
T 1mda_H 351 SSVE 354 (368)
T ss_dssp EECC
T ss_pred EEEE
Confidence 8876
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.22 E-value=7e-10 Score=122.19 Aligned_cols=273 Identities=7% Similarity=-0.011 Sum_probs=175.4
Q ss_pred ccEEEEEEecCCcEEEEeec--CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 735 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..+..++++++|+.+++... ++.+++|.+... .... ..-|. .....+-..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g------~~~~---~p~~~-----------~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD------GLIP---FPPQS-----------GNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT------EEEE---SCCCC-----------SSCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC------Ceec---CCCcc-----------cCcccceeEeeEEEEcC
Confidence 46788999999998777542 343677776511 1000 00000 00112556789999999
Q ss_pred CCCEEEEEe------CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEEe---CCCcEEEEEcCCce
Q 001363 813 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE 877 (1092)
Q Consensus 813 dg~~l~~~s------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~ 877 (1092)
+|+++++-. ++.|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998766553 378999999999877766432 235689999983454555555 57899999999998
Q ss_pred eeEeeccccCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe-
Q 001363 878 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 955 (1092)
Q Consensus 878 ~~~~l~~h~~~V~-~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~- 955 (1092)
....+.+|..... ...++++|..+.+.+.|+.++.|.. .+..++|+|||+.|.++.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 7777766533211 1445667878888888887765531 256899999999888753
Q ss_pred CC-cEEEEEcCC---ce-----eeeee-ccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCC
Q 001363 956 ET-HLAIYEAEE---LT-----CLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus 956 d~-~i~lwd~~~---~~-----~~~~~-~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
.+ .+..++... +. ....+ ..++.+....++++++|.++++...++.|.+||..+|+...... .+
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~-- 288 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE-- 288 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence 33 455554321 10 00000 11234456789999999999998889999999986675432221 11
Q ss_pred CccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001363 1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1026 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
....+..++++| ++.++++....+.+.+|+
T Consensus 289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ---GGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred ---ceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 123567889998 477777777665554443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-08 Score=122.86 Aligned_cols=199 Identities=11% Similarity=0.089 Sum_probs=133.9
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcC----------e-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 525 (1092)
.++.++.++.|..+|..+|+.+.++...... + ..+++ ++..++.++.|+.|..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4666777899999999999999887643221 0 11222 3457888899999999999999988876
Q ss_pred cCC-C----CceEEEEEccCCCEEEEEecCCC--CceeEEEEeCCCCeEEEEEeecccc---------------------
Q 001363 526 DAP-G----LGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQ--------------------- 577 (1092)
Q Consensus 526 ~~~-~----~~i~~~~~s~dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~--------------------- 577 (1092)
... . ..+.+.-.. .+..+++++...+ .++.|+.+|..+|+.+-.+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 1 112111111 2345555443211 2578999999999998777643210
Q ss_pred --------CCceEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEeCCCCC-------C
Q 001363 578 --------HNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------P 623 (1092)
Q Consensus 578 --------~~~v~~~~~~~~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~ 623 (1092)
......++++|++..++.++.++ .|..+|..+|+.+..++...+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 01113578889999999887664 4999999999999887753221 1
Q ss_pred CCceEEEccCC---CEEEEEeCCCeEEEEECCCCceeeec
Q 001363 624 ENPRICFNKNG---TLLAVIANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 624 ~v~~v~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1092)
....+....+| ..+++++.+|.++++|..+++.+...
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 12223333477 68899999999999999999876554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.6e-09 Score=112.44 Aligned_cols=224 Identities=13% Similarity=0.032 Sum_probs=149.3
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
-..+.+|+|++..++.++..++.|..||..+++... + .....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 456789999876688888888999999998875431 1 123579999999999887765
Q ss_pred CCCEEEEEEccCCCcccceEEEc-c-cccceeEEEEecCCCcEEEEEEeC------CCcEEEEECCCCceeEEEecCCcC
Q 001363 416 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
.++ |.+||..+++... ..... + ....+.+++++|+|+ ++++... .+.|..++ +++.. .+..+...
T Consensus 108 ~~g-l~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DDG-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TTE-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CCC-EEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 444 9999998876321 11111 1 124688999999998 4444432 24555556 45433 33333345
Q ss_pred eEEEeecccCCccEE-EEEecCCeEEEEEcC--CC-Cc-----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 488 VYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
.+.++|++ +++.+ ++.+.++.|.+|+++ ++ .. ...+.........+++.++|+..++... .+.|.
T Consensus 181 ~~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~ 254 (326)
T 2ghs_A 181 PNSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD 254 (326)
T ss_dssp EEEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred cCCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence 67788854 66655 444567899999986 43 21 1122223445678999999987766542 34699
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeC
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 598 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 598 (1092)
.||. +++.+..+.... ..+.+++|+ ++++.|++++.
T Consensus 255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEB
T ss_pred EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEec
Confidence 9998 677777776544 579999998 88887766553
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.4e-09 Score=124.31 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=151.9
Q ss_pred CCeEEEEEcCCceeeEEecCCCCC--------------------------------eEEEEEcCCCCCEEEEEeCCC---
Q 001363 822 GGVISLYIVMTFKTILTIMPPSPT--------------------------------ATSLAFNPHDNNVIAIGMDDS--- 866 (1092)
Q Consensus 822 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~d~~~lasg~~dg--- 866 (1092)
++.|+.+|..+|+.+.++...... ...++++| ++.+|+.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 467888888888887766432211 13578899 677888887764
Q ss_pred ----------------cEEEEEcCCceeeEeecc--cc-------CCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCC
Q 001363 867 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 867 ----------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg---~~l~s~s~Dg~I~iwd~~~~ 918 (1092)
.|..+|..+|+.+..+.. |. ....-+....+| +.++.++.+|.|.++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999999877653 31 122223444477 68999999999999999998
Q ss_pred ceeeeeeeecCC--------CC------------c-----CCC--CCceEEEEccCCCEEEEE-eC--------------
Q 001363 919 GIQTCRSLQTPD--------GV------------M-----TLA--PSETHIQFHKDQTRFLLV-HE-------------- 956 (1092)
Q Consensus 919 ~~~~~~~~~~~~--------~~------------~-----~~~--~~v~~l~~s~dg~~la~~-~d-------------- 956 (1092)
+........... +. . ... ..-..++|+|++.++.+. .+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 865422211000 00 0 000 001367899999888773 21
Q ss_pred -----------------------------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 957 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 957 -----------------------------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
+.|..||+.+++.+.... +..++....++.+|..+++++.||.+++||+
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 679999999999876643 3445556667888889999999999999999
Q ss_pred CCCceEEeeccccccCCCCccccccceEEEECCCCCC-EEEEEeC----------------CCcEEEEecC
Q 001363 1008 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLT----------------NGEVYVIEPN 1061 (1092)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~-~l~~~~~----------------dg~v~~w~~~ 1061 (1092)
.+|+.+.++.... + +...-+.+.+ ++. ++++.+. .+.+.+|.+.
T Consensus 506 ~tG~~lw~~~~~~----~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 506 ATGEKLWEAPTGT----G-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp TTCCEEEEEECSS----C-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCCceeeeeeCCC----C-----cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 9999998887332 1 1112234444 344 4444333 4788999987
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.4e-09 Score=124.57 Aligned_cols=383 Identities=10% Similarity=0.104 Sum_probs=216.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcC----------e-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 525 (1092)
.++.++.++.|..+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 4667777899999999999999888643221 0 11111 2357888999999999999999988766
Q ss_pred cCC-C-CceEEEEEcc---CCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccc----------------------
Q 001363 526 DAP-G-LGCTRMAYSA---NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL---------------------- 576 (1092)
Q Consensus 526 ~~~-~-~~i~~~~~s~---dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~---------------------- 576 (1092)
... . .....+..+| ++. ++++.... ..++.|+.||..+|+.+-.+.....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 543 1 1101111112 444 44443211 1367899999999999877653110
Q ss_pred ------cCCceEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEeCCCCC-------CC
Q 001363 577 ------QHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PE 624 (1092)
Q Consensus 577 ------~~~~v~~~~~~~~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 624 (1092)
+......++++|++..++.++.++. |..||..+|+.+..+....+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 0011125788899899999887764 999999999999888653221 01
Q ss_pred CceEEEccCCC---EEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 625 NPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 625 v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
........+|+ .++.++.+|.++++|..+++.+......... +...+.+. .+..+
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~~~~---------------------~~~pi 364 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS-WTKGMDMK---------------------TGRPI 364 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEEETT---------------------TTEEE
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc-cccccCcc---------------------CCCcc
Confidence 11112223565 7889999999999999999877543321100 00000000 00000
Q ss_pred eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001363 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 781 (1092)
... .. .|.. +.....+..|.......-..++++|+...+++...+....++......
T Consensus 365 ~~~----~~-~~~~----~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~-------------- 421 (689)
T 1yiq_A 365 LDE----EN-AAYW----KNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP-------------- 421 (689)
T ss_dssp ECH----HH-HCTT----TSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC--------------
T ss_pred cch----hh-cccc----CCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc--------------
Confidence 000 00 0000 000111222222222233458899998888887776544443321100
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecC---CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC
Q 001363 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857 (1092)
Q Consensus 782 ~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d---g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 857 (1092)
.|....+. . ..... +...|. +....... +|.|..||+.+++.+..+..+.. ...-.++. .+.
T Consensus 422 ~~~~~~~~-~---------~~g~~--~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agg 487 (689)
T 1yiq_A 422 KRNPFKSM-Y---------QLGLR--TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGN 487 (689)
T ss_dssp CCCSCTTS-C---------CCSSE--ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTT
T ss_pred cccccccc-c---------ccCcc--ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceE-CCC
Confidence 01110000 0 00000 000000 00000001 37899999999999888765432 22334555 566
Q ss_pred EEEEEeCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEE
Q 001363 858 VIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 903 (1092)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s 903 (1092)
++++|+.||.++.||.++|+.+.+++...+. ..-+.|+.||+..+.
T Consensus 488 lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 488 LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 9999999999999999999999888754332 234677788875443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-08 Score=111.44 Aligned_cols=225 Identities=10% Similarity=0.018 Sum_probs=145.4
Q ss_pred EEEEEEecCCcEE-EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 737 ISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 737 i~~l~~s~~g~~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
..+.+|++++..+ ++...++.|..|+... +. ..... ....+.+++++++|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~-~~~~~-----~~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS----------------------GR-KTVHA-----LPFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT----------------------TE-EEEEE-----CSSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC----------------------Cc-EEEEE-----CCCcceEEEEeCCCe
Confidence 4567899975544 4444567777776432 21 11111 234688999999999
Q ss_pred EEEEEeCCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCCCCCEEEEEeC------CCcEEEEEcCCceeeEeeccc
Q 001363 816 YLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 816 ~l~~~sdg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~------dg~v~iwd~~~~~~~~~l~~h 885 (1092)
++++. ++.|.+||..+++....... ....+..++++| +++++++... .+.|..++ +++.. .+..+
T Consensus 103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~ 177 (326)
T 2ghs_A 103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD 177 (326)
T ss_dssp EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence 87765 55599999988775433221 123578999999 7877665442 24566666 45543 33334
Q ss_pred cCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcC--CC-ceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEE
Q 001363 886 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 960 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~-s~Dg~I~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~ 960 (1092)
......++|+||++.|..+ +.++.|.+|++. ++ +......+....... ..+..+++.++|.+.++. .++.|.
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence 4557789999999876544 557889999986 54 322212222222111 236789999999987775 457899
Q ss_pred EEEcCCceeeeeeccCCCCCEEEEEEe-cCCCEEEEEECC
Q 001363 961 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 999 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~D 999 (1092)
.||. +++.+..+ ..+...+++++|+ +|++.|++++..
T Consensus 255 ~~d~-~g~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARY-EVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEE-ECCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998 56665553 3445679999999 898877665544
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7e-08 Score=107.94 Aligned_cols=151 Identities=15% Similarity=0.071 Sum_probs=100.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCC---------cCeE-EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~v~-~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 526 (1092)
.++.++.++.|..+|.++|+.+....... ..+. .... ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 47778889999999999999987775432 2222 2222 33578888999999999999988877665
Q ss_pred CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC--CceEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
........... .+ ..+++++. ++.|+.+|..+|+.+..+....... ......... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~-~~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVV-SD-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEE-ET-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEE-EC-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 44322111222 23 35555543 5679999999999887766533000 000111222 457888888999999
Q ss_pred EECCCCceEEEEeCC
Q 001363 605 WDMNKVQLLTTIDAG 619 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~ 619 (1092)
+|..+|+.+......
T Consensus 203 ~d~~tG~~~w~~~~~ 217 (376)
T 3q7m_A 203 VLMEQGQMIWQQRIS 217 (376)
T ss_dssp EETTTCCEEEEEECC
T ss_pred EECCCCcEEEEEecc
Confidence 999999988777643
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.2e-09 Score=111.60 Aligned_cols=232 Identities=14% Similarity=0.083 Sum_probs=152.2
Q ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001363 394 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
.........+|+|+|+ ++++...++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 3555677899999999 4556667789999998 443 22 3445666789999999998 5666556678999997
Q ss_pred CCCceeEEEecC----CcCeEEEeecccCCccEEEE----Eec-------------CCeEEEEEcCCCCceEEecCCCCc
Q 001363 473 VTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLG 531 (1092)
Q Consensus 473 ~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~ 531 (1092)
+ ++........ ...++.+++. ++|.++++ |.. .+.|..+|..+++..... ....
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred C-CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 6 6533222111 1235667774 47777776 322 245666766555544332 3345
Q ss_pred eEEEEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 532 CTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
...++|+||++.|+.+.... .+.+.|+.|++..+... ..+... .......+++.++|+ +.+++.+ .|.+|+.
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS 265 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence 67899999999887765421 01257999998765421 111111 124456788999998 4444444 4999998
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001363 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1092)
+++.+..+..+. .+.+++|+++++.|.+++.++.
T Consensus 266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 577777776553 3789999999998988887643
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-05 Score=92.56 Aligned_cols=521 Identities=8% Similarity=-0.028 Sum_probs=269.7
Q ss_pred CCEEEEEEccCCC-cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcCeEEEeec
Q 001363 417 KHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 417 d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~i~~~ 494 (1092)
...|+..++.+.. ... .+...-.....++|++.+.. ++++-...+.|..++++.... ...+...-.....+++.
T Consensus 17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 4457777777542 111 11223345778999997764 445555677899999876532 22333333567788885
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+..... ....|...++............
T Consensus 93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECSS
T ss_pred ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeCC
Confidence 53 33566666678899999998765544443444456789999986666655321 1346777776543332222222
Q ss_pred cccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 575 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
......+++++++..|+.+. ..+.|...|+............ ......+++..+ .++++-...+.|...|..+
T Consensus 170 ---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 170 ---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp ---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSS
T ss_pred ---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCC
Confidence 25678999999877777664 5677888888754433322211 123457777665 4444445578899999887
Q ss_pred CceeeecccccCceeeeeec-CCCcccc--ccc----cCCceeecCCCCCCCccceeeccccccceeccccccCcccccc
Q 001363 654 SNSVDAAGVLSDNLRKLSVN-PISTVTG--AGI----ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1092)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~--~~~----~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~ 726 (1092)
++....+.........+++. +.....+ .+. .-....+. +|..........+|...
T Consensus 244 g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~l--------------- 305 (619)
T 3s94_A 244 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVKL--------------- 305 (619)
T ss_dssp CCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCCB---------------
T ss_pred CcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchhee---------------
Confidence 76555444333223333332 1110000 000 00000010 00000000000000000
Q ss_pred ccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001363 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~ 806 (1092)
. .....|. +..+.++..+..+.|+..++..... . .....+. .-..+.
T Consensus 306 --~----~d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~~---~l~~~~ 352 (619)
T 3s94_A 306 --L----ENGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQLE---DIRHAI 352 (619)
T ss_dssp --C----TTSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCCS---CCSSEE
T ss_pred --c----ccCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEecc---ccCccE
Confidence 0 0000000 0011122223334454444332110 0 0011111 223467
Q ss_pred EEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001363 807 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
+++|.+.+..|..++ .+.|..++.........+...-.....+|+.+.++++..+-+..+.|.+.++........+..
T Consensus 353 ~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~ 432 (619)
T 3s94_A 353 AIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISE 432 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT
T ss_pred EEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEEC
Confidence 899998766666665 578999988754433334333356678999863555666666678999999875432222233
Q ss_pred ccCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eCCcEE
Q 001363 885 HSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLA 960 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~ 960 (1092)
.-....+|++.|....|..+.. ...|...+++...... ... ... .....+++++++..|..+ ..+.|.
T Consensus 433 ~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~GlalD~~~~~LY~aD~~~~~I~ 504 (619)
T 3s94_A 433 DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LVN---TSL---GWPNGLALDYDEGKIYWGDAKTDKIE 504 (619)
T ss_dssp TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EEe---CCC---CCCeeeEEcccCCEEEEEECCCCEEE
Confidence 4456889999997444444432 3566666766533211 111 111 257899999988877775 446788
Q ss_pred EEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 961 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
.+++.... ...+....-....+++...+ ...++-...+.|...+..+|.
T Consensus 505 ~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 505 VMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred EEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 88885433 33322222223345555433 333333345667777777773
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.9e-10 Score=121.74 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=133.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc--------ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
.+++.+++++...++++|+.++ +.+|++..... .... ....+.. |+.++| |++ +|+++ .++.|+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~ 109 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALY 109 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEE
Confidence 3789999999999999999986 66799764330 1111 1224666 999999 888 67777 789999
Q ss_pred EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
+||+.+.........|...+.++.+.+. .+++++.||.+.+||+....... ....|++++|||+| ++.+.
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE
T ss_pred EEEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE
Confidence 9999887766677778888888776432 28889999999999998766543 33589999999999 45555
Q ss_pred cCCCCceeEEEEeCCCCeE--EEEEee------ccccCCceEEEEEcCCCCEEEE
Q 001363 549 TSKEGESFLVEWNESEGAI--KRTYQG------LQLQHNSVSVVHFDTAKDQILA 595 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~--~~~~~~------~~~~~~~v~~~~~~~~~~~l~~ 595 (1092)
. ++.+++|+...++. .+++.. +..+...|.++.|.+++.++++
T Consensus 180 ~----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 180 K----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp T----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred c----CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 4 56699999888775 555621 0112478999999999887776
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.6e-08 Score=105.24 Aligned_cols=233 Identities=14% Similarity=0.109 Sum_probs=152.0
Q ss_pred EEe--cCCCEEEEEe--CCeEEEEEcCCc----eeeEEec------C-CCCCeEEEEEcCCCCCEEEEEeCC------Cc
Q 001363 809 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM------P-PSPTATSLAFNPHDNNVIAIGMDD------ST 867 (1092)
Q Consensus 809 ~~s--~dg~~l~~~s--dg~i~iwd~~~~----~~~~~~~------~-~~~~i~~l~~s~~d~~~lasg~~d------g~ 867 (1092)
.++ +++++|++.+ +++|.++|+.+. +...++. . ....-..+.++| ++ +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 346 8899998887 588999999765 6666663 0 112446678899 77 66666655 78
Q ss_pred EEEEEcCCceeeEeeccccC---CeEEEEEcCCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeee
Q 001363 868 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS 925 (1092)
Q Consensus 868 v~iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~l~s~s-------------------~Dg~I~iwd~~~~~~~~~~~ 925 (1092)
|.++|..+.+.+.++..-.+ --..+.|+|+++.+++.. .+.+|.+||+.+++... .
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 99999999999998873222 234588999999999874 36889999999865333 2
Q ss_pred eecCCCCcCCCCCceEEEE--ccCCCEEEEE-------eCCcEEEEEcCCceeeeee---ccC----------------C
Q 001363 926 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW---FPI----------------S 977 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~--s~dg~~la~~-------~d~~i~lwd~~~~~~~~~~---~~~----------------h 977 (1092)
+....... ....+.| +|+++++.++ .+++|.+|....++..... ... -
T Consensus 244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 33321111 2445655 9999988773 3457877665544311110 000 0
Q ss_pred CCCEEEEEEecCCCEEEEEEC-CCcEEEEEcCC---CceEEeeccccccCCCCc----cccccceEEEECCCCCCEEEEE
Q 001363 978 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYLRPTTS----CLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~~-Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~p~d~~~l~~~ 1049 (1092)
......+.+|+||++|.++.. .+.|.++|+.. .+++..+..........| .....|..++++| |+++|+++
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa 398 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT 398 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence 245788999999999988775 68999999863 355555543211100000 0012466789999 58888888
Q ss_pred e
Q 001363 1050 L 1050 (1092)
Q Consensus 1050 ~ 1050 (1092)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.13 E-value=7.1e-08 Score=107.87 Aligned_cols=277 Identities=11% Similarity=0.048 Sum_probs=172.0
Q ss_pred EEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC
Q 001363 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 429 (1092)
Q Consensus 350 lasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 429 (1092)
+.+++.++.|..+|..+|+.+-........ .. .......+.+ ....++..+++++.++.|..+|..+|+
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~------~~----~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAEKD------GW----FSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC---------C----CSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCcccc------cc----ccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 556677899999999999977543321000 00 0000122222 112246678888899999999999997
Q ss_pred cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe-----EEEeecccCCccEEEE
Q 001363 430 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----YSLCPHAKENIHFIFS 504 (1092)
Q Consensus 430 ~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~~~l~s 504 (1092)
.+-. .............. ++ .++.++.++.|..+|..+|+.+.......... ..... .+..++.
T Consensus 125 ~~W~---~~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~ 193 (376)
T 3q7m_A 125 VAWQ---TKVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVV 193 (376)
T ss_dssp EEEE---EECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEE
T ss_pred EEEE---EeCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEE
Confidence 5532 22222111222222 34 47778889999999999999988776433221 11111 1246788
Q ss_pred EecCCeEEEEEcCCCCceEEecCCCCc----eEE---EEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 505 ISVDGKIKAWLYDSLGARVDYDAPGLG----CTR---MAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 505 ~~~dg~i~vwd~~~~~~~~~~~~~~~~----i~~---~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
++.+|.+..+|..+++........... +.. +...| .+..++.++. ++.++.+|..+|+.+.....
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~-- 267 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY----NGNLTALDLRSGQIMWKREL-- 267 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT----TSCEEEEETTTCCEEEEECC--
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec----CcEEEEEECCCCcEEeeccC--
Confidence 888999999999988877665432210 000 00111 2445555543 45699999999988766543
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
.....+.. ++..+++++.++.+..+|..+++.+........ ..+..... .+..+++++.+|.+..+|..+++
T Consensus 268 ---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 268 ---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp ---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred ---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 22333333 467888899999999999999998877752211 11222233 25688899999999999999998
Q ss_pred eeeeccc
Q 001363 656 SVDAAGV 662 (1092)
Q Consensus 656 ~~~~~~~ 662 (1092)
.+.....
T Consensus 340 ~~~~~~~ 346 (376)
T 3q7m_A 340 FVAQQKV 346 (376)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7665543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-08 Score=121.22 Aligned_cols=290 Identities=12% Similarity=0.050 Sum_probs=180.4
Q ss_pred EEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-CcE-EEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001363 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1092)
Q Consensus 350 lasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V-~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1092)
+.+++.++.|.-+|..+|+.+-.+....- ... ..... ..+ ..+++ ++..|++++.|+.|..+|..+
T Consensus 73 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~-----~~~-----~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDGRLIWKYDPQSD-----RHR-----AGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp EEEECGGGCEEEEETTTCCEEEEECCCCC-----GGG-----GGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEcCCCeEEEEECCCCceeEEEcCCCC-----ccc-----cccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC
Confidence 55566789999999999998765332100 000 00000 000 01122 467888899999999999999
Q ss_pred CCcccceEEEcccc---cceeEEEEecCCCcEEEEEEe-----CCCcEEEEECCCCceeEEEecCC-c------------
Q 001363 428 GSDARQQLEIDAHV---GNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHG-A------------ 486 (1092)
Q Consensus 428 ~~~~~~~~~~~~h~---~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~-~------------ 486 (1092)
|+.+-.... ..+. ..+.+.-.-.++. +++..+ .++.|+.||.++|+.+..+.... .
T Consensus 141 G~~~W~~~~-~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 141 GQRAWSVDT-RADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp CCEEEEEEC-CSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CCEeeeecC-cCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 986543211 1011 1111111112554 333322 37899999999999998775211 0
Q ss_pred ------------------CeEEEeecccCCccEEEEEecCCe-------------------EEEEEcCCCCceEEecCCC
Q 001363 487 ------------------PVYSLCPHAKENIHFIFSISVDGK-------------------IKAWLYDSLGARVDYDAPG 529 (1092)
Q Consensus 487 ------------------~v~~i~~~~~~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~ 529 (1092)
....+++ +++..+++.++.++. |..+|.++++.+..+....
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~ 295 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAY--DPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP 295 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccCCceeeecCCCCccccceeE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence 0012344 334567888887764 9999999999887665421
Q ss_pred C---------ceEEEEEccCCC---EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc---------------------
Q 001363 530 L---------GCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--------------------- 576 (1092)
Q Consensus 530 ~---------~i~~~~~s~dg~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 576 (1092)
. +........+|+ .++.+.. ++.++++|..+|+.+........
T Consensus 296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 296 GDAWDYTATQHMILAELPIDGKPRKVLMQAPK----NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred cccccccCCCCcEEEeeccCCcEEEEEEEECC----CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1 122222233565 5555543 77899999999998744321110
Q ss_pred ---------------cCCceEEEEEcCCCCEEEEEeC-------------------------------------------
Q 001363 577 ---------------QHNSVSVVHFDTAKDQILAAGD------------------------------------------- 598 (1092)
Q Consensus 577 ---------------~~~~v~~~~~~~~~~~l~~~s~------------------------------------------- 598 (1092)
....-..++++|+...+++...
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 0000112688888888877532
Q ss_pred --CCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccc
Q 001363 599 --DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1092)
Q Consensus 599 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 663 (1092)
+|.|+.||+.+++.+.....+.. .....+...+.++++++.||.++.||..+++.+..++..
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 37899999999999988876532 333466677889999999999999999999988777644
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.6e-08 Score=105.78 Aligned_cols=239 Identities=12% Similarity=0.080 Sum_probs=153.6
Q ss_pred eec--CCCceEEEEEcCCCcEEEEecCCC--CeeEEeeeeeeecccccceeeEeeecC-CCCcEEEEEECCCCCEEEEEe
Q 001363 341 DFH--PVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 341 ~~s--pdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~~ 415 (1092)
+++ ++++++++.|..+++|.|+|+.+. +......++.-+ +... .......+..+||| .++++.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~-----------~~~~~g~s~Ph~~~~~pdG-i~Vs~~ 155 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE-----------VKKVSGYSRLHTVHCGPDA-IYISAL 155 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHH-----------HHHHHCEEEEEEEEECSSC-EEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhh-----------cccccCCCcccceeECCCe-EEEEcC
Confidence 447 899998899999999999999755 212111110000 0000 11245668899999 666654
Q ss_pred CC------CEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEe-------------------CCCcEEE
Q 001363 416 SK------HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG-------------------DDKTIKV 469 (1092)
Q Consensus 416 ~d------~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~-------------------~d~~i~v 469 (1092)
.+ +.|.+.|.++++.+.... ..... .--..+.|+|+++ .+++.. ...+|.+
T Consensus 156 g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 156 GNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 44 689999999987665321 11222 2233588899999 677764 3689999
Q ss_pred EECCCCceeEEEecC-C-cCeEEEeecccCCccEEEEEe------cCCeEEEEEcCCCCce--EE--ecCC---------
Q 001363 470 WDAVTGSRTYSFEGH-G-APVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGAR--VD--YDAP--------- 528 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~-~-~~v~~i~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~--~~--~~~~--------- 528 (1092)
||+.+++.+.++... . .....+.|..++++++++.++ .+++|.+|..+.+... .. +...
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 999999888888653 1 234456665577888777766 4668887766542211 01 1110
Q ss_pred -------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC---CCeEEEEEeeccc-----------cCCceEEEEEc
Q 001363 529 -------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES---EGAIKRTYQGLQL-----------QHNSVSVVHFD 587 (1092)
Q Consensus 529 -------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~---~~~~~~~~~~~~~-----------~~~~v~~~~~~ 587 (1092)
......+.+|+||++|+++.. +.+.|.++|+. +.+.+..+..... -.+....++++
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 234678999999999998764 35679999985 2345544433210 00135788999
Q ss_pred CCCCEEEEEe
Q 001363 588 TAKDQILAAG 597 (1092)
Q Consensus 588 ~~~~~l~~~s 597 (1092)
|||++++++.
T Consensus 390 pDGk~LyVaN 399 (462)
T 2ece_A 390 RDGRRVYVTN 399 (462)
T ss_dssp TTSSEEEEEC
T ss_pred CCCCEEEEEc
Confidence 9999999986
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.5e-09 Score=112.69 Aligned_cols=302 Identities=11% Similarity=0.049 Sum_probs=177.3
Q ss_pred eEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE
Q 001363 445 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 524 (1092)
Q Consensus 445 ~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 524 (1092)
.+..+..++. +..++.++.|..|| .+++.+.....+...+.++.. ..++ .+..++.+ +..+|. +++....
T Consensus 23 ~~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 23 SSPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp CCCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGG
T ss_pred cCceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEE
Confidence 3445556776 66777888999999 888887665544444555554 3344 45555544 777775 4333333
Q ss_pred ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 525 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 525 ~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
+...........+. + ..++.++. ++.|+.+|.. ++......... ..+.++...+++. ++.++.++.|..
T Consensus 93 ~~~~~~~~~~~~~~-~-~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~ 161 (330)
T 3hxj_A 93 FDTKKAIVSDFTIF-E-DILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYA 161 (330)
T ss_dssp SCC-----CCEEEE-T-TEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEE
T ss_pred EECCCCcccCceEE-C-CEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEE
Confidence 33222222223333 4 44555543 4569999988 77666555433 4455566666665 667778899999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccccc
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 684 (1092)
+|.. ++......... ..+.++...+++.+.+ ++ +.+..++ .+++......
T Consensus 162 ~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~----------------------- 211 (330)
T 3hxj_A 162 INPD-GTEKWRFKTND--AITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFY----------------------- 211 (330)
T ss_dssp ECTT-SCEEEEEECSS--CCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEEC-----------------------
T ss_pred ECCC-CCEeEEEecCC--CceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEc-----------------------
Confidence 9998 87776665432 2356666666666443 33 5566665 3321111000
Q ss_pred CCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeec
Q 001363 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 764 (1092)
Q Consensus 685 ~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~ 764 (1092)
T Consensus 212 -------------------------------------------------------------------------------- 211 (330)
T 3hxj_A 212 -------------------------------------------------------------------------------- 211 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCC
Q 001363 765 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP 844 (1092)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~ 844 (1092)
. ....+.++++.++|.+.+...++.+..+|. +++.+..+.....
T Consensus 212 ~-----------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~ 255 (330)
T 3hxj_A 212 A-----------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKR 255 (330)
T ss_dssp C-----------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSC
T ss_pred c-----------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCC
Confidence 0 111233445555555555444566666653 4444444443333
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
.+.++.+.+ ++ .|.+++.+|.+..+|. +++.+..+......+.++...++|++. .++.+|.+++...+.
T Consensus 256 ~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 256 IESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp CCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred ccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence 344556665 45 5666888889999996 677777666556667788887787655 478899998887765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.4e-08 Score=108.83 Aligned_cols=345 Identities=11% Similarity=0.041 Sum_probs=199.1
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe----------cCCeEEEEEcCCCCceEE
Q 001363 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKIKAWLYDSLGARVD 524 (1092)
Q Consensus 455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~ 524 (1092)
++.+.||+..|.++|+-+-+++.++.+......-. .-|-.+.....++..+ .+|. ....
T Consensus 15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~----------~~~~ 83 (595)
T 1fwx_A 15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGK----------RIHD 83 (595)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTC----------SSCC
T ss_pred EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCc----------eecc
Confidence 44688999999999999999999988863221000 0000000000000000 0010 0000
Q ss_pred ecCCCCceEEEEE---ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE-c-CCCCEEEEEe--
Q 001363 525 YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG-- 597 (1092)
Q Consensus 525 ~~~~~~~i~~~~~---s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~s-- 597 (1092)
.+.. .-..+++ .+||++++.+.. .+..|.+.|+.+.++.+.+.-.. ......+++ + |+++++++++
T Consensus 84 -~gd~-hh~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~ 156 (595)
T 1fwx_A 84 -NGDL-HHVHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGED 156 (595)
T ss_dssp -CCCB-CCEEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECS
T ss_pred -cCCC-CccccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEeccc
Confidence 0000 1122333 248999998653 36679999999999888664322 245778887 5 9999999985
Q ss_pred ----------------CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001363 598 ----------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 598 ----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
.++.+.+.|.++.+...++...+. ...++++|+|+++++.+.+... +..+....
T Consensus 157 ~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~~ 226 (595)
T 1fwx_A 157 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEMT 226 (595)
T ss_dssp CEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHHT
T ss_pred ccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhcc
Confidence 345799999999999998886542 4678999999999999876321 00000000
Q ss_pred cccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEE
Q 001363 662 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 741 (1092)
Q Consensus 662 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 741 (1092)
. .....+.+-.... .. .
T Consensus 227 ~--~~~d~v~V~~~~~-----------------------~~--------------------------------------~ 243 (595)
T 1fwx_A 227 A--AEMDHIVVFNIAE-----------------------IE--------------------------------------K 243 (595)
T ss_dssp C--CSEEEEEEEEHHH-----------------------HH--------------------------------------H
T ss_pred c--cccceEEEeeccc-----------------------ee--------------------------------------E
Confidence 0 0000011100000 00 0
Q ss_pred EecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc-eeeecCCCCCCCCCeeEEEEecCCCEEEEE
Q 001363 742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSA 820 (1092)
Q Consensus 742 ~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~ 820 (1092)
+.++|+.... +.+.+.|....+ +.. +.... -.....++.++|||++++++
T Consensus 244 ~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~ 294 (595)
T 1fwx_A 244 AIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVA 294 (595)
T ss_dssp HHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEE
T ss_pred eccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEe
Confidence 0111111111 223343322100 111 11111 12244578999999999988
Q ss_pred e--CCeEEEEEcCCce------------eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC----------c
Q 001363 821 S--GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------S 876 (1092)
Q Consensus 821 s--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------~ 876 (1092)
+ +++|.++|+.+.+ ...... -......++|+| +|...++..-|++|.+||+.+ .
T Consensus 295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~ 372 (595)
T 1fwx_A 295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD 372 (595)
T ss_dssp CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred CCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence 7 5889999998763 223332 345678999999 776666777899999999987 4
Q ss_pred eeeEeeccccCCe-----EEEEEcCCCCEEEEEeC---CCc----------EEEEEcCCCcee
Q 001363 877 EVISKLEGHSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQ 921 (1092)
Q Consensus 877 ~~~~~l~~h~~~V-----~~l~~spdg~~l~s~s~---Dg~----------I~iwd~~~~~~~ 921 (1092)
+.+.++..|-.+- ..+.++|||++|+++.. |+. -.++|+++++..
T Consensus 373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred eeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 5677776664432 22356899999998753 543 188999765533
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-08 Score=112.31 Aligned_cols=269 Identities=12% Similarity=0.059 Sum_probs=173.2
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
.+..+..+|. +..|+.++.|..|| .+++.+... ..+...+.++...++|.+.+ ++.+
T Consensus 23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~-------------------~~~~~~~~~~~~~~~g~l~v-~t~~ 79 (330)
T 3hxj_A 23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFF-------------------KSGEIIECRPSIGKDGTIYF-GSDK 79 (330)
T ss_dssp CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESS-------------------CGGGEEEECCEETTTTEECC-SSCE
T ss_pred cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEE-------------------ecCCCcccceEEecCCcEEE-ecCc
Confidence 4556667776 45667788999999 888765431 11234456777777776444 4444
Q ss_pred CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccC
Q 001363 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1092)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 497 (1092)
|..+|. +++.+... ...........+. ++ .+..++.++.|..+|.. ++.......+...+.++.. .+
T Consensus 80 --l~~~d~-~g~~~~~~---~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~ 146 (330)
T 3hxj_A 80 --VYAINP-DGTEKWRF---DTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE 146 (330)
T ss_dssp --EEEECC-CGGGGGGS---CC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred --EEEECC-CCcEEEEE---ECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence 888886 55443321 1122223333443 44 47778888999999988 8877777655555555554 33
Q ss_pred CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc
Q 001363 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1092)
Q Consensus 498 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1092)
++ .++.++.++.|..+|.. ++...........+.++.+.+++...+.. +.|+.+| .+++....+....
T Consensus 147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~-- 214 (330)
T 3hxj_A 147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY-- 214 (330)
T ss_dssp TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence 44 46678888999999988 66666665555567777787888765544 2399999 7777666555433
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee
Q 001363 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
..+.++...+++ .+.+++.++.+..+|. +++.+........ .+..+.+.+++ .|.+++.+|.+..++. +++..
T Consensus 215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 557777888776 4666777888888874 5666666654432 23455665555 5667888889999985 55555
Q ss_pred eecc
Q 001363 658 DAAG 661 (1092)
Q Consensus 658 ~~~~ 661 (1092)
....
T Consensus 288 ~~~~ 291 (330)
T 3hxj_A 288 WNFE 291 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.9e-10 Score=122.74 Aligned_cols=191 Identities=8% Similarity=-0.023 Sum_probs=112.5
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
++..+++++.|+.|+.||..+|+.+- .+.. +.+.+..+..++. ++++++.|+.|+.||.++|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 67899999999999999999997654 3333 4566666677787 677788999999999999998877654322
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.......... ++..+++++.++.+..||..+++....+..+. ...++|++..+++++. ++.|+.||..+|+
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTRE 151 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSSS
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCCC
Confidence 1111111111 33578888999999999999988877665443 2345678888888765 6779999999998
Q ss_pred EEEEEeeccccCCceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
.+..+.... .....+.++. ..+++++.+|.++.||..+|+.+.....
T Consensus 152 ~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 152 LRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp CCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred EEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 776655322 1122233332 5678889999999999999999887764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=0.00052 Score=86.43 Aligned_cols=609 Identities=9% Similarity=0.034 Sum_probs=304.6
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC----CCEEEE
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLGV 413 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd----g~~las 413 (1092)
+++++-.+| ++..|+..|.=.+|.+.....-...-+.+-| --..-++|..++.... ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEEE
Confidence 566666666 5777888777777777643210000000000 1123467777776431 235555
Q ss_pred Ee---CCCEEEEEEccCCCcccceEEEcccccceeEEEEec---CCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 414 AY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 414 ~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
++ .+|.+++..-.-+-.......+.+ ...++.+.... .+. +|+.+..+.+ .|+.+. ++.+..+.. .
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~-~-- 467 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETEL-M-- 467 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECC-T--
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCccccccc-c--
Confidence 43 457788765432211111112222 23455555432 233 5665555555 455432 223333311 1
Q ss_pred eEEEeecccCCccEEEEEec---------CCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 488 VYSLCPHAKENIHFIFSISV---------DGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.| ..+...|+++.. ...|++.+.........+..+. ..|...+.+ +.+++.+. .+.+
T Consensus 468 ----gf--~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-----g~~l 534 (1158)
T 3ei3_A 468 ----GF--VDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-----GRAL 534 (1158)
T ss_dssp ----TC--CSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-----TTEE
T ss_pred ----cc--cCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-----CCEE
Confidence 11 112223333321 2235666655444555555443 356655544 34555553 1236
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
.++++..++.... .... -...|.|+++.|. +.++++|.. |++++|+++.+.+.+........ ....++.+
T Consensus 535 ~~fel~~~~L~~~-~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l 611 (1158)
T 3ei3_A 535 YYLQIHPQELRQI-SHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILM 611 (1158)
T ss_dssp EEEEEETTEEEEE-EEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEE
T ss_pred EEEEeeCCceeee-cccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEE
Confidence 6677665544332 2111 1367999998764 368888886 99999999998777765544321 12334433
Q ss_pred c--cCCCEEEEEeCCCeEEEEECC--CCceeee--cccccCceeeeeecC----------CCccccccccCC--------
Q 001363 631 N--KNGTLLAVIANENRIKILETP--ESNSVDA--AGVLSDNLRKLSVNP----------ISTVTGAGIANG-------- 686 (1092)
Q Consensus 631 s--~~~~~l~~~~~dg~i~iw~~~--~~~~~~~--~~~~~~~v~~~~~~~----------~~~~~~~~~~~~-------- 686 (1092)
. ....+|.+|-.||.+.-+.+. ++..... ..-...++.-..+.. ..+.+... ..+
T Consensus 612 ~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~-~~~~l~~s~l~ 690 (1158)
T 3ei3_A 612 TTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYS-SNHKLVFSNVN 690 (1158)
T ss_dssp EEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEE-SSSSEEEEEBS
T ss_pred EEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEE-cCCceEEeccC
Confidence 3 234678899999998766554 3322211 000011111111110 11111000 011
Q ss_pred ------ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001363 687 ------SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 760 (1092)
Q Consensus 687 ------~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~ 760 (1092)
...|+....|+| ++ +..++.+++..++....-....+ .-...+..++++|+.+.++.+..+...
T Consensus 691 ~~~v~~~~~F~se~~~~g--~v-~~~~~~LrI~~i~~~~~~~~~~i-----pL~~Tprri~y~~~~~~~~v~~~~~~~-- 760 (1158)
T 3ei3_A 691 LKEVNYMCPLNSDGYPDS--LA-LANNSTLTIGTIDEIQKLHIRTV-----PLYESPRKICYQEVSQCFGVLSSRIEV-- 760 (1158)
T ss_dssp SSCCCEEEEECCSSSTTE--EE-EECSSCEEEEEECCSSSEEEEEE-----ECSSEEEEEEEEGGGTEEEEEEEEEEE--
T ss_pred hHHhceEeccCcccCCCc--EE-EEcCCceEEEEecccCCeeEEEE-----eCCCCceEEEEcCCCCEEEEEEEeccc--
Confidence 111222212222 22 22335577777643221111111 123577899999998877666543211
Q ss_pred EeecCC-----------------------------CcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE--
Q 001363 761 WRWPRN-----------------------------DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA-- 809 (1092)
Q Consensus 761 w~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~-- 809 (1092)
++.... ....-+.......+++.|+.+...+...++.. ...+.+++
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v 837 (1158)
T 3ei3_A 761 QDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NEYALSLVSC 837 (1158)
T ss_dssp ECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TEEEEEEEEE
T ss_pred cccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---CcceEEEEEE
Confidence 111000 00000111223457788888887776666653 33444444
Q ss_pred -EecC-CCEEEEEe-----------CCeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001363 810 -LSKN-DAYLFSAS-----------GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 810 -~s~d-g~~l~~~s-----------dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
|..+ ..++++|. .|.|.+|++..++...... ...+.+++++-- +|++|| |- ..+|++|++..
T Consensus 838 ~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~ 913 (1158)
T 3ei3_A 838 KLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTT 913 (1158)
T ss_dssp CCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECT
T ss_pred EEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCC
Confidence 3333 46888774 2569999987544322211 235678887754 454444 43 47899999986
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe
Q 001363 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
.+.+..-..+-..|..+.....+++++.|..-..|.+...+..+... ..+..-.. . .+++++.|-.++.++++-.
T Consensus 914 ~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~D~~-~---~~vta~~~ld~~t~l~aD~ 988 (1158)
T 3ei3_A 914 EKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNF-EEIARDFN-P---NWMSAVEILDDDNFLGAEN 988 (1158)
T ss_dssp TSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEE-EEEEECCS-C---BCEEEEEEEETTEEEEEET
T ss_pred CceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeE-EEEEeecc-c---ccEEEEEEEccCcEEEEcC
Confidence 65433111122223333333357899999888888887665432111 12221111 1 3689999987776666556
Q ss_pred CCcEEEEEcCCc-------eeeeeeccCC-CCCEEEEEE---ecC---------CCEEEEEECCCcEEEEEc
Q 001363 956 ETHLAIYEAEEL-------TCLKQWFPIS-SVPISQATF---SCD---------CRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 956 d~~i~lwd~~~~-------~~~~~~~~~h-~~~v~~l~f---s~d---------g~~l~t~~~Dg~i~vwd~ 1007 (1092)
++.+.++..... +.+.....-| ...|+++.- .+. ...++.++.+|+|.+.-.
T Consensus 989 ~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 989 AFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp TSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred CCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 788888876531 2222111112 556777652 222 234677888998887643
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=0.00015 Score=85.46 Aligned_cols=458 Identities=9% Similarity=-0.018 Sum_probs=230.3
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
-..+..++|++.+.+++.+-...+.|..++++....... ++...-..+..+|+.+.+..|+.
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~ly~ 100 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYW 100 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEEEE
Confidence 346889999997776666656678888888876532110 12223357889999997666665
Q ss_pred E-eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE-eCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 414 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 414 ~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
+ ...+.|.+.++.+... +. .+...-.....+++.|.+.. ++++- +..+.|...+++...........-...+.+
T Consensus 101 ~d~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 101 TDSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 176 (619)
T ss_dssp EETTTTEEEEEETTSCSC-EE--EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred EeCCCCEEEEEECCCCCE-EE--EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence 5 4568899999986432 21 12233445778999997664 33333 334677777765433322232334456778
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
++.+. ++.+.++-...+.|...|++.................+++..+ .++.+-. ..+.|...|..+++....+
T Consensus 177 ald~~-~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 177 TLDYE-EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGLREI 250 (619)
T ss_dssp EEETT-TTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCCEEC
T ss_pred EEEcc-CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCcccEEE
Confidence 88543 3345555556678888888754433322212222345666544 5555432 2455888887776543322
Q ss_pred eec-----------c--cc---------CCceEEEEE-----------cCCC---------------CEEEEEeCCCcEE
Q 001363 572 QGL-----------Q--LQ---------HNSVSVVHF-----------DTAK---------------DQILAAGDDHVIK 603 (1092)
Q Consensus 572 ~~~-----------~--~~---------~~~v~~~~~-----------~~~~---------------~~l~~~s~dg~i~ 603 (1092)
... . +. .+....+++ .|.| .+|+.+ ..+.|+
T Consensus 251 ~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~ 329 (619)
T 3s94_A 251 HSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLR 329 (619)
T ss_dssp CSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEE
T ss_pred ecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceE
Confidence 110 0 00 000001111 1111 122222 234566
Q ss_pred EEECCCCceEE-EEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccc
Q 001363 604 IWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1092)
Q Consensus 604 iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (1092)
..++....... .+.. .....+..++|++.+..|..+ ...+.|+.++...................+++.+.
T Consensus 330 ~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~------ 402 (619)
T 3s94_A 330 RISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV------ 402 (619)
T ss_dssp EEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT------
T ss_pred EEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc------
Confidence 66665443211 1111 122345678898855555544 45788888887754332222222233344444421
Q ss_pred cccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC--CeeE
Q 001363 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHL 759 (1092)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~ 759 (1092)
.+++..+-...+.|.+.+++... ...+. . ........+++.|....|+.+... +.|.
T Consensus 403 ---------------~~~lY~tD~~~~~I~v~~~~G~~---~~~l~-~--~~l~~P~~iavdp~~G~ly~tD~g~~~~I~ 461 (619)
T 3s94_A 403 ---------------ARNLYWTDTGTDRIEVTRLNGTM---RKILI-S--EDLEEPRAIVLDPMVGYMYWTDWGEIPKIE 461 (619)
T ss_dssp ---------------TTEEEEEETTTTEEEEEETTSCS---CEEEE-C--TTCCSEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred ---------------cCcEEEEeCCCCcEEEEeCCCCe---EEEEE-E--CCCCCeeeEEEEcCCCcEEEecCCCCCEEE
Confidence 23344444444555555544211 11111 0 123457789999864444444322 3333
Q ss_pred EEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeE
Q 001363 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTIL 837 (1092)
Q Consensus 760 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~ 837 (1092)
..+++.. . ..... . ..-.....++++++++.|..+. .+.|..+++.......
T Consensus 462 r~~~dG~-------~--------------~~~l~-~----~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~ 515 (619)
T 3s94_A 462 RAALDGS-------D--------------RVVLV-N----TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV 515 (619)
T ss_dssp EEETTSC-------S--------------CEEEE-C----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE
T ss_pred EEccCCC-------c--------------cEEEE-e----CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE
Confidence 3322211 0 00010 0 1234567899999888887776 3779889886443322
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 838 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
.+...-.....+++.. +.+..+-...+.|...|..+|
T Consensus 516 ~~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 516 LVEDKIPHIFGFTLLG--DYVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEECCCCSSCCEEEET--TEEEEECTTSSCEEEEESSSC
T ss_pred EeccCCCCcEEEEEEC--CEEEEeecCCCeEEEEEcCCC
Confidence 2222222334555543 334443334456666666665
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-10 Score=124.60 Aligned_cols=191 Identities=9% Similarity=0.052 Sum_probs=109.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC
Q 001363 855 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 934 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 934 (1092)
++..|++++.||.|+.||..+|+.+.++.. +.+.+..+.+++..+++++.|+.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 456889999999999999999999988876 56666666778888888889999999999887643211111100000
Q ss_pred CCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEE
Q 001363 935 LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus 935 ~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1014 (1092)
.+..++.++..++.+.++.++.||..+|+.+..+.. +. ...++|++..|++++.|+.|+.||..+|+.+.
T Consensus 85 -----~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 85 -----ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp -----TCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred -----cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 011112344433336789999999999998766432 22 24567788899999999999999999999877
Q ss_pred eeccccccCCCCccccccceEEEECCC--CCCEEEEEeCCCcEEEEecCCCCCccccC
Q 001363 1015 RILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus 1015 ~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1070 (1092)
++....+.. .+++++ -...+++++.||.|+.||....+..|...
T Consensus 155 ~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 155 NATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 665222111 112210 01567888999999999998888888765
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-06 Score=104.89 Aligned_cols=375 Identities=14% Similarity=0.137 Sum_probs=206.2
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCe-----------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 525 (1092)
.++.++.++.|..+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 46667778899999999999998875432211 11122 2357888899999999999999988766
Q ss_pred cCCCC----ceEEEEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccc-----------------------
Q 001363 526 DAPGL----GCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL----------------------- 576 (1092)
Q Consensus 526 ~~~~~----~i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~----------------------- 576 (1092)
..... .+.+.-.-.++ .++++.... ..++.|+.+|..+|+.+-.+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred ccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 54211 11110011134 454443221 1257899999999999887753210
Q ss_pred -----cCCceEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEeCCCCC-------CCC
Q 001363 577 -----QHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PEN 625 (1092)
Q Consensus 577 -----~~~~v~~~~~~~~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~v 625 (1092)
+......+++.|+...++.++.++. |..+|..+|+.+...+...+. ...
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 0011124678888889988887763 999999999999888753221 111
Q ss_pred ceEEEccCCC---EEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccce
Q 001363 626 PRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1092)
Q Consensus 626 ~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1092)
....+..+|+ .+++++.+|.++++|..+++.+......... +...+.+ ..+..........+++.
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~---------~~g~p~~~~~~~~~~~~-- 370 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDL---------ATGRPVEAPGVRYEKEP-- 370 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECT---------TTCCEEECTTTTCSSSC--
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccc---------ccCCccccccccccCCe--
Confidence 1122234665 6888999999999999999887554322210 0011110 00000000000000000
Q ss_pred eeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCcc
Q 001363 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782 (1092)
Q Consensus 703 s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 782 (1092)
.+..|.......-..++++|+...+++...+-...+ .... ..
T Consensus 371 ----------------------~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~-~~~~---------------~~ 412 (668)
T 1kv9_A 371 ----------------------IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVY-RNEG---------------KD 412 (668)
T ss_dssp ----------------------EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE-CCCG---------------GG
T ss_pred ----------------------eEECCCCccccCCCcceECCCCCEEEEeccccceEe-eeec---------------cc
Confidence 000111001111123678888777666555422211 1000 00
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE-EEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001363 783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860 (1092)
Q Consensus 783 ~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~-~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 860 (1092)
|....+. . .... + .+..++ ... +|.|..||..+++.+.+...+.. .....+.. .+.+++
T Consensus 413 ~~~~~~~--~--------~g~~-----~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~vf 473 (668)
T 1kv9_A 413 FVTRKAF--N--------TAAG-----F--ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVF 473 (668)
T ss_dssp CCCCSSC--C--------CSSC-----G--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEE
T ss_pred ccccccc--c--------cCcc-----c--cccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEe-CCCEEE
Confidence 1100000 0 0000 0 011111 122 47899999999998877654332 22233333 466888
Q ss_pred EEeCCCcEEEEEcCCceeeEeeccccCCe-EEEEEcCCCC-EEEEEe
Q 001363 861 IGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG 905 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~-~l~s~s 905 (1092)
+|+.||.++.||..+|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus 474 ~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 474 QGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 89999999999999999998887543211 2244455776 444443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=0.00053 Score=80.79 Aligned_cols=535 Identities=9% Similarity=-0.020 Sum_probs=275.8
Q ss_pred eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEcc
Q 001363 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYH 426 (1092)
Q Consensus 348 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~ 426 (1092)
+|+.+ ....|+..++.+........ + ..-..+..++|.+.+..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34444 34778999988765332111 1 123468899999977776655 456889999987
Q ss_pred CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEE-
Q 001363 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI- 505 (1092)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~- 505 (1092)
+... .. .+.........+++.+.+.. ++++-...+.|.+.+++.......+...-.....+++.|. +|.+.++-
T Consensus 68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 6432 21 22222235678999877664 4556666788999997655432223233445678888654 33444443
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001363 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1092)
Q Consensus 506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1092)
+..+.|...+++......... .......+++++++..|+.+-. +.+.|...|+..... ..+.... .....++
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~gla 214 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLT 214 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEE
T ss_pred CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEE
Confidence 235678888877655444433 3456789999999888887753 356799999876544 3333322 3456777
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE-EEccCCCEEEEEeCCCeEEEEECCCCce--eeeccc
Q 001363 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIANENRIKILETPESNS--VDAAGV 662 (1092)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~ 662 (1092)
+.. +..+++-...+.|...|..+++....+..... ....+ .+++..+. + .+.. ...++.+ +....
T Consensus 215 v~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~n~C----~~~ng~C~~~C~~~- 282 (628)
T 4a0p_A 215 QYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-WNEC----ASSNGHCSHLCLAV- 282 (628)
T ss_dssp EET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-CCTT----TTTGGGCSSEEEEE-
T ss_pred EEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-ceEe----ccCCCCcchhhhcC-
Confidence 764 33334444578898899888776666543211 12233 22221110 0 0000 0000000 00000
Q ss_pred ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEE
Q 001363 663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742 (1092)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 742 (1092)
....-. ..+|.+-.+.... .... .+ ...++.+. ...|+-..+..... ....++. .....+.+++|
T Consensus 283 ~~~~~~--C~C~~g~~l~~d~---~~C~----~~-~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~ld~ 347 (628)
T 4a0p_A 283 PVGGFV--CGCPAHYSLNADN---RTCS----AP-TTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAIDY 347 (628)
T ss_dssp TTTEEE--EECSTTCEECTTS---SCEE----CC-SSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEEEE
T ss_pred CCCCee--EEcCCCcEecccC---CcCc----cc-cceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEEEE
Confidence 000000 0111111110000 0000 11 12222222 23343333321110 0111111 12345778999
Q ss_pred ecCCcEEEEeec-CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe
Q 001363 743 NNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 821 (1092)
Q Consensus 743 s~~g~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s 821 (1092)
.+....|+.+.. .+.|..++...... ..+.............+..+++...++.|..+.
T Consensus 348 d~~~~~iy~sD~~~~~I~r~~~~g~~~--------------------~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td 407 (628)
T 4a0p_A 348 DPLDKQLYWIDSRQNMIRKAQEDGSQG--------------------FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTC 407 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEEC--------CCCEEEEEEETTTTEEEEEE
T ss_pred ecCCCeEEEEecCcceEEEEEcCCCCc--------------------eEEEEcccccccccCCcceEEeeccCCeEEEEc
Confidence 887665655543 45666554322100 001000000000234578999999877776665
Q ss_pred --CCeEEEEEcCCceeeEEe-cCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcCCceeeEeeccccCCeEEEEEcC
Q 001363 822 --GGVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKRVTGLVFSD 896 (1092)
Q Consensus 822 --dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp 896 (1092)
.+.|.+.++. |+....+ ........++++.|..+.++.+-.... .|...+++...........-.....|++.+
T Consensus 408 ~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~ 486 (628)
T 4a0p_A 408 EATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDS 486 (628)
T ss_dssp TTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred CCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeC
Confidence 4789999986 4444443 334467899999995555555543333 566666653332222232344578999999
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeee
Q 001363 897 ALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 972 (1092)
Q Consensus 897 dg~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~ 972 (1092)
+++.|..+. ..+.|...+++..... .+.. +.. ....++++.. +.+..+ ...+.|...|..+|+....
T Consensus 487 ~~~~LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~---~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~ 555 (628)
T 4a0p_A 487 RLGKLFWADSDLRRIESSDLSGANRI---VLED--SNI---LQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTK 555 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCE---EEEC--SSC---SCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEE
T ss_pred CCCEEEEEeCCCCEEEEEeCCCCceE---EEEc--CCC---CCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEE
Confidence 876666554 4578999998764321 1211 111 1345666644 333333 2445677777666654433
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=107.39 Aligned_cols=235 Identities=9% Similarity=0.015 Sum_probs=159.1
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCceeeEEecCC-CCCeEEEEE-c-CCCCCEEEEEe------------------CCCcE
Q 001363 812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------------DDSTI 868 (1092)
Q Consensus 812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~lasg~------------------~dg~v 868 (1092)
+||+++.+.. ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 4899998876 477999999999988855433 246788888 5 8 788888884 34589
Q ss_pred EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q 001363 869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--------------------------------------QI 910 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--------------------------------------~I 910 (1092)
.++|..+.+.+.++.--. ....++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999999888876322 356788999999999988653 35
Q ss_pred EEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eCCcEEEEEcCCce------------eeeeec
Q 001363 911 FVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------------CLKQWF 974 (1092)
Q Consensus 911 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~------------~~~~~~ 974 (1092)
.|.|..+ +... ...+.... ...++.++|||++++++ .+++|.++|+.+.+ ......
T Consensus 257 ~VID~~~~~~~~~-~~~Ipvg~-------~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 257 KVVDGRKEASSLF-TRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEEECSGGGCCSS-EEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEEeCcccCCcee-EEEEecCC-------CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 5666655 2110 11122211 35679999999999985 56789999999663 222222
Q ss_pred cCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC----------CceEEeeccccccCCCCccccccceEEEECCCCCC
Q 001363 975 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus 975 ~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1044 (1092)
-......++|++||...++..-|+.|.+||+.+ ...+.++.. .+.|.+ .-.++..+.+| |++
T Consensus 329 --vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh----~~~~~g~t~~~-DGk 400 (595)
T 1fwx_A 329 --LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGH----LKTVMGETLDA-TND 400 (595)
T ss_dssp --CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEE----EEETTTTSTTC-CSS
T ss_pred --CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-cccccc----ceeccceEeCC-CCC
Confidence 246788999999994445566899999999987 444545442 111111 11223345677 688
Q ss_pred EEEEEeCCC--cE-----------EEEecCCCC
Q 001363 1045 QFAVGLTNG--EV-----------YVIEPNEPG 1064 (1092)
Q Consensus 1045 ~l~~~~~dg--~v-----------~~w~~~~~~ 1064 (1092)
+|+++..-. .+ .++|++..+
T Consensus 401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 888776532 23 788884333
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=6.9e-06 Score=86.40 Aligned_cols=224 Identities=12% Similarity=0.043 Sum_probs=143.7
Q ss_pred CcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 397 VSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
..+..++|++++..|..+. ..+.|..++..++.... .+.........+++.+++.. ++++....+.|.+++++..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4578899999877666654 56789999998654211 22222246789999998664 4556666789999997654
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEec--CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
...............+++.+. ++.++++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 322222222245677888553 2333444333 468888888754433333233346788999999888877653 2
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
.+.|..+|.........+.+. .....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~ 260 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIAL 260 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEEC
T ss_pred CCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecC
Confidence 567999998765544443321 334566654 45565554 56899999999999988886432 12357788888
Q ss_pred CCC
Q 001363 633 NGT 635 (1092)
Q Consensus 633 ~~~ 635 (1092)
++.
T Consensus 261 ~~~ 263 (267)
T 1npe_A 261 SQC 263 (267)
T ss_dssp SCC
T ss_pred ccC
Confidence 764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.84 E-value=0.0011 Score=83.48 Aligned_cols=572 Identities=10% Similarity=0.091 Sum_probs=280.3
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCc-----ccceEEEcccccceeEEEEecC---CCcEEEEEEe---CCCcE
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG---DDKTI 467 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~---~d~~i 467 (1092)
.+++++-.+| +|..|+..|.=.+|.+..... +....++ ..-++|.+++.... +.. .+++++ .+|.+
T Consensus 329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL 405 (1158)
T 3ei3_A 329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL 405 (1158)
T ss_dssp CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence 3567776555 788888877777777764321 1222233 24468888887542 122 233332 56788
Q ss_pred EEEECCCC-ceeEEEec-CCcCeEEEeecc-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEcc-CC
Q 001363 468 KVWDAVTG-SRTYSFEG-HGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSA-NG 541 (1092)
Q Consensus 468 ~vwd~~~~-~~~~~~~~-~~~~v~~i~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~-dg 541 (1092)
++..-.-+ +.+..+.- .-..++.+.... +....+|+.+..+.+ +++.+.. +........+ .....++... .+
T Consensus 406 ~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~~~~~TL~~~~l~~ 483 (1158)
T 3ei3_A 406 RIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNG-EEVEETELMGFVDDQQTFFCGNVAH 483 (1158)
T ss_dssp EEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEET-TEEEEECCTTCCSSSCEEEEEEETT
T ss_pred EEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeC-CcccccccccccCCCCcEEEEEcCC
Confidence 88752211 11122210 113344443221 123457777776666 4554422 1222221111 1111111111 12
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--EEeCC
Q 001363 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG 619 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~ 619 (1092)
..++=... ..|++.+...+..+..+.... ...|...+.+. .+++.++ .+.+.++.+..++... .....
T Consensus 484 ~~ivQVt~-----~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~ 553 (1158)
T 3ei3_A 484 QQLIQITS-----ASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEME 553 (1158)
T ss_dssp TEEEEEES-----SCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECS
T ss_pred CeEEEEec-----CEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCC
Confidence 23433332 227777766555555554333 23566666543 4666665 5778888877654332 22222
Q ss_pred CCCCCCceEEEccC------CCEEEEEeC-CCeEEEEECCCCceeeeccccc-CceeeeeecCCCccccccccCCceeec
Q 001363 620 GGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVN 691 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1092)
..|.|+++.|. +.++++|.. |++++|+++++.+.+....-.. ....++.+. .+
T Consensus 554 ---~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~---------------~~- 614 (1158)
T 3ei3_A 554 ---HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMT---------------TF- 614 (1158)
T ss_dssp ---SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEE---------------EE-
T ss_pred ---CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEE---------------Ee-
Confidence 35888888763 479999997 9999999998765443221111 111222221 01
Q ss_pred CCCCCCCccceeeccccccceecccc--ccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcC
Q 001363 692 EDPKEDVKPEISVEAENKSEVEKPLF--ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 769 (1092)
Q Consensus 692 ~~~s~d~~~l~s~~~d~~i~lw~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~ 769 (1092)
....++..|-.||.+..+.++. +.........+ ...++.-..+...|..-+.+.++.-..+|.-+
T Consensus 615 ----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~----- 681 (1158)
T 3ei3_A 615 ----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN----- 681 (1158)
T ss_dssp ----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESSSCEEEEESS-----
T ss_pred ----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECCCCEEEEEcC-----
Confidence 1124456666666654444332 11111111111 11233333333333322222223222222211
Q ss_pred cCcccccccCCccccCCCCCceeeecCCCCCCCCCee-EEEEecC--CCEEEEEeCCeEEEEEcCCcee--eEEecCCCC
Q 001363 770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALSKN--DAYLFSASGGVISLYIVMTFKT--ILTIMPPSP 844 (1092)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~-~~~~s~d--g~~l~~~sdg~i~iwd~~~~~~--~~~~~~~~~ 844 (1092)
+. +....+ ....+. ...|+.. ..-++..+++.++|..+.+... ++++. -..
T Consensus 682 ------------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~ 737 (1158)
T 3ei3_A 682 ------------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-LYE 737 (1158)
T ss_dssp ------------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-CSS
T ss_pred ------------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-CCC
Confidence 00 111111 111222 2234332 2345555566688877654322 22222 234
Q ss_pred CeEEEEEcCCCCCEEEEEeCC-------------------------------------------------CcEEEEEcCC
Q 001363 845 TATSLAFNPHDNNVIAIGMDD-------------------------------------------------STILIYNARS 875 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~d-------------------------------------------------g~v~iwd~~~ 875 (1092)
.+..++++| ..+.++++..+ +.|++.|-.+
T Consensus 738 Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t 816 (1158)
T 3ei3_A 738 SPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT 816 (1158)
T ss_dssp EEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTT
T ss_pred CceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCC
Confidence 667788887 55544443311 2467777777
Q ss_pred ceeeEeecc-ccCCeEEEE---EcCC-CCEEEEEe----------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001363 876 SEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 876 ~~~~~~l~~-h~~~V~~l~---~spd-g~~l~s~s----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
.+.+..+.- ....+.+++ |..+ ..+++.|. ..|.|.++++..++.. .+...+- .+.+.
T Consensus 817 ~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~---lv~~~~v----~g~v~ 889 (1158)
T 3ei3_A 817 FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ---TVAEKEV----KGAVY 889 (1158)
T ss_dssp CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE---EEEEEEE----SSCEE
T ss_pred CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE---EEEEEEc----CCcCE
Confidence 766554432 222344444 4333 46788775 3478999999854322 2221111 12566
Q ss_pred EEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC--CCceEEeecc
Q 001363 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS--NLEVQCRILS 1018 (1092)
Q Consensus 941 ~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~--~~~~~~~~~~ 1018 (1092)
+++-- +| +|+++-..+|++|++...+.++. ...+-..|..+.....|.+++.|..-.+|.+.... .+++.-..
T Consensus 890 al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a-- 964 (1158)
T 3ei3_A 890 SMVEF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA-- 964 (1158)
T ss_dssp EEEEE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE--
T ss_pred EEeee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE--
Confidence 66533 23 67777789999999986654431 11111123333343457788888877777765543 33332111
Q ss_pred ccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 1019 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1019 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
..+. +.+..++.+- |...++.+..+|.|.+...+..
T Consensus 965 ~D~~-------~~~vta~~~l--d~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 965 RDFN-------PNWMSAVEIL--DDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp ECCS-------CBCEEEEEEE--ETTEEEEEETTSEEEEEEECTT
T ss_pred eecc-------cccEEEEEEE--ccCcEEEEcCCCcEEEEecCCC
Confidence 1222 2334455554 2368999999999999988653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-05 Score=85.15 Aligned_cols=258 Identities=11% Similarity=0.012 Sum_probs=156.4
Q ss_pred CCEEEEEeCCCEEEEEEccCCCccc--ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
|.+|+.+.. +.|+.+++.+..... ....+......+..++|++++.. ++++....+.|.+++...+.....+....
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 78 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL 78 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence 345655543 468889987654211 01112222345789999997764 55566667899999987665433333323
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.....+++.+. ++.+.++....+.|.+++++.................++++|++..|+.+.... ..+.|+.++....
T Consensus 79 ~~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~ 156 (267)
T 1npe_A 79 GSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT 156 (267)
T ss_dssp CCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred CCccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC
Confidence 45678888543 234555666678999999876544333333334668899999877766654321 1356888887543
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
. ...+.... ......+++++++..|+.+. ..+.|.++|.........+... .....++.. ++.++++...++
T Consensus 157 ~-~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~lyva~~~~~ 229 (267)
T 1npe_A 157 N-RRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTN 229 (267)
T ss_dssp C-CEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTT
T ss_pred C-cEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCEEEEEECCCC
Confidence 2 22332111 24678899999887776654 5678999999765544444321 223456654 344444444568
Q ss_pred eEEEEECCCCceeeeccccc-CceeeeeecCCC
Q 001363 645 RIKILETPESNSVDAAGVLS-DNLRKLSVNPIS 676 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 676 (1092)
.|..++..+++.+..+.... .....+++.|..
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 99999999887776665332 234555555443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.2e-06 Score=102.78 Aligned_cols=194 Identities=13% Similarity=0.143 Sum_probs=129.1
Q ss_pred CCeEEEEEcCCceeeEEecCCC-------------------------------CCeEEEEEcCCCCCEEEEEeCCCc---
Q 001363 822 GGVISLYIVMTFKTILTIMPPS-------------------------------PTATSLAFNPHDNNVIAIGMDDST--- 867 (1092)
Q Consensus 822 dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~d~~~lasg~~dg~--- 867 (1092)
++.|..+|..+|+.+.++.... .....++++| +..+++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 3667778887777776654210 0112478888 6778888887763
Q ss_pred ----------------EEEEEcCCceeeEeecc--cc-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCc
Q 001363 868 ----------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 868 ----------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg~---~l~s~s~Dg~I~iwd~~~~~ 919 (1092)
|..+|..+|+.+..++. |. .+.....+..+|+ .++.++.+|.+.++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 99999999999887764 32 2333333334675 68889999999999999988
Q ss_pred eeeeeeeec---------CCCCc--------C------CC-----CCceEEEEccCCCEEEEE-----------------
Q 001363 920 IQTCRSLQT---------PDGVM--------T------LA-----PSETHIQFHKDQTRFLLV----------------- 954 (1092)
Q Consensus 920 ~~~~~~~~~---------~~~~~--------~------~~-----~~v~~l~~s~dg~~la~~----------------- 954 (1092)
......... ..+.. . .. ..-..++++|+..++.+.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 652211100 00000 0 00 001237888887776651
Q ss_pred --------------------eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEE
Q 001363 955 --------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus 955 --------------------~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1014 (1092)
.++.|..||..+|+.+-+... ..++....+...|.++++++.||.++.||..+|+.+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 126799999999998765432 2334444556678899999999999999999999998
Q ss_pred eecc
Q 001363 1015 RILS 1018 (1092)
Q Consensus 1015 ~~~~ 1018 (1092)
++..
T Consensus 494 ~~~~ 497 (668)
T 1kv9_A 494 QFEA 497 (668)
T ss_dssp EEEC
T ss_pred EecC
Confidence 8874
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.9e-06 Score=96.51 Aligned_cols=167 Identities=14% Similarity=0.176 Sum_probs=106.8
Q ss_pred EEEEcCCCCCEEEEEeCC----------------CcEEEEEcCCceeeEeecc--cc--------CCeEEEEEc-CCC--
Q 001363 848 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL-- 898 (1092)
Q Consensus 848 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pdg-- 898 (1092)
.+++.+ ...+++.++.+ +.|.-+|..+|+.+..++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 356667 55677777665 3899999999999877764 21 1221 2222 567
Q ss_pred -CEEEEEeCCCcEEEEEcCCCceeeeeeeec----------CCCCc----------CC-----------CCCceEEEEcc
Q 001363 899 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVM----------TL-----------APSETHIQFHK 946 (1092)
Q Consensus 899 -~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~----------~~~~~----------~~-----------~~~v~~l~~s~ 946 (1092)
+.++.++.+|.+.+.|..+++..-...... ..+.. .. ...-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567788999999999999987654322110 00000 00 00113567888
Q ss_pred CCCEEEEE----------------------------------------eCCcEEEEEcCCceeeeeeccCCCCCEEEEEE
Q 001363 947 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF 986 (1092)
Q Consensus 947 dg~~la~~----------------------------------------~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~f 986 (1092)
+..++.+. ..+.|.-||+.+|+.+-+...+ .++..-.+
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 480 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM 480 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence 77766541 2256888898888877654322 22222223
Q ss_pred ecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 987 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 987 s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
...|..++.++.||.++.||..+|+.+.++..
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 44667888899999999999999999988863
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-06 Score=89.82 Aligned_cols=200 Identities=12% Similarity=0.076 Sum_probs=138.5
Q ss_pred CeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001363 804 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1092)
....++|++|+.++++.+ ++.|+++|+.+++.+..+.-.. .....+++. ++++.++...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 457899999876655554 3789999999999998875322 233456665 3455566667889999999999999
Q ss_pred EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCc
Q 001363 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 958 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~ 958 (1092)
.++..-... ...+++||+.|+.+..++.|.++|..+.+......+....... ..+..+.|. +|...+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~---~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV---IRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc---ccceeEEEE-CCEEEEecCCCCe
Confidence 888632121 2446678888877777889999999987654433322211111 135678888 77555544 5689
Q ss_pred EEEEEcCCceeeeeeccC-C-----------CCCEEEEEEecCCCEEE-EEECCCcEEEEEcCCCc
Q 001363 959 LAIYEAEELTCLKQWFPI-S-----------SVPISQATFSCDCRMVF-TSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 959 i~lwd~~~~~~~~~~~~~-h-----------~~~v~~l~fs~dg~~l~-t~~~Dg~i~vwd~~~~~ 1011 (1092)
|.+.|..+++.+..+..+ - ......++|+|+++.++ ++...+.+.+-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 999999999988776432 0 13568999999987555 55567888888876643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-05 Score=91.73 Aligned_cols=378 Identities=11% Similarity=0.002 Sum_probs=204.0
Q ss_pred EEEEEeC-CCcEEEEEC-CCCceeEEEecCCc-Ce----------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceE
Q 001363 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGA-PV----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 523 (1092)
Q Consensus 457 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~~~~-~v----------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 523 (1092)
.++.++. ++.|..+|. ++|+.+.++..... .+ ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3556666 889999999 89999887753321 00 11122 23578888899999999999998887
Q ss_pred EecCCCC----ceEE-EEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeecccc-------------------
Q 001363 524 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 577 (1092)
Q Consensus 524 ~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 577 (1092)
....... .+.+ ..+ .++ .++++.... ..++.|+.+|..+|+.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 1111 111 144 445443211 11567999999999998776543200
Q ss_pred ---------------CC-ceEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEeCCCCC---
Q 001363 578 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 622 (1092)
Q Consensus 578 ---------------~~-~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 622 (1092)
.. ....+++.++...++.++.+ +.|..+|..+|+.+...+...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 00235667777777776642 35999999999999888654211
Q ss_pred ----CCCceEEEccCCC---EEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCC
Q 001363 623 ----PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1092)
Q Consensus 623 ----~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (1092)
....-+....+|+ .++.++.+|.+.++|..+++.+.........-....+.+
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence 1111122224674 677888899999999999987765432110000000000
Q ss_pred CCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccc
Q 001363 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 775 (1092)
Q Consensus 696 ~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~ 775 (1092)
..++.+...... . .+.....+..|.......-..++++|+...+++...+....++..+..
T Consensus 357 ~~g~p~~~~~~~---------~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~--------- 417 (571)
T 2ad6_A 357 KTGTPVRDPEFA---------T-RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP--------- 417 (571)
T ss_dssp TTCSEEECGGGC---------C-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC---------
T ss_pred cCCceecccccC---------C-CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc---------
Confidence 000000000000 0 000000001111001111135688999888888877644444332110
Q ss_pred cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCC
Q 001363 776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 855 (1092)
Q Consensus 776 ~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d 855 (1092)
...+. . .-.....+..+|.+. ....++.+..||..+++.+.++.... .+....+.. .
T Consensus 418 ---------~~~g~-~---------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~ 474 (571)
T 2ad6_A 418 ---------YRAGQ-F---------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-K 474 (571)
T ss_dssp ---------CCTTS-C---------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-T
T ss_pred ---------cccCC-c---------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-C
Confidence 00011 0 000011122233321 00124789999999998887765322 222222232 3
Q ss_pred CCEEEEEeCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEE
Q 001363 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 903 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s 903 (1092)
+.++++++.||.|+.||..+|+.+.++...... -.-+.+..+|+.++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 457777999999999999999999888743221 122345567765553
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.9e-05 Score=89.89 Aligned_cols=379 Identities=12% Similarity=0.075 Sum_probs=202.7
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEecCCcCe---------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001363 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1092)
Q Consensus 458 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v---------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 528 (1092)
++.++.++.|..+|.++|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445553449999999999998876443211 11122 2357888899999999999999988765443
Q ss_pred CC----ceE-EEEEcc---CCC-EEEEEecCC--CCceeEEEEeCCCCeEEEEEeecccc--------------------
Q 001363 529 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 577 (1092)
Q Consensus 529 ~~----~i~-~~~~s~---dg~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 577 (1092)
.. .+. ...+.. +|+ .++++.... ..++.|+-+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111112 234 455543211 12678999999999987665431100
Q ss_pred ------------------CCceEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceEEE
Q 001363 578 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 578 ------------------~~~v~~~~~~~~~~~l~~~s~--------------------d----g~i~iwd~~~~~~~~~ 615 (1092)
...-..+++.|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000023567777788887663 2 5899999999999988
Q ss_pred EeCCCCC----CCCc-eEEEc---cCCC---EEEEEeCCCeEEEEECCCCceeeecccccC--ceeeeeecCCCcccccc
Q 001363 616 IDAGGGL----PENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG 682 (1092)
Q Consensus 616 ~~~~~~~----~~v~-~v~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~ 682 (1092)
++...+. ..+. -+.+. .+|+ .++.++.+|.++++|..+++.+........ ....+...
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~--------- 377 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK--------- 377 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT---------
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc---------
Confidence 8653221 0111 12222 4674 788899999999999999988766543221 11111000
Q ss_pred ccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEe
Q 001363 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 762 (1092)
Q Consensus 683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~ 762 (1092)
.+.........|.. +. . .+ +.....+..|.......-..++++|+...+++...+-...++.
T Consensus 378 --~g~p~~~~~~~~~~--~~-~-~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 439 (582)
T 1flg_A 378 --TGRPVEREGQRPPL--PE-P-GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT 439 (582)
T ss_dssp --TCCEEECTTCSCCC--CC-T-TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred --CCCEeEccccCCcc--cc-c-cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence 00000000000000 00 0 00 0000001111111111122467888877777766553333332
Q ss_pred ecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC
Q 001363 763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 842 (1092)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~ 842 (1092)
.+.. ...| ....-..+...|++. ..+|.|..||+.+++.+.+....
T Consensus 440 ~~~~------------------~~~g------------~~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~ 485 (582)
T 1flg_A 440 EEVS------------------YTKG------------SAYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEH 485 (582)
T ss_dssp CCCC------------------CCTT------------SCCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEES
T ss_pred cccc------------------ccCC------------CceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCC
Confidence 1110 0011 111111122223310 12578999999999988766533
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCe-EEEEEcCCCCEEEE
Q 001363 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILVS 903 (1092)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~l~s 903 (1092)
.. +..-.+.. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..||+..+.
T Consensus 486 ~~-~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 486 LP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp SC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CC-CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 22 21111112 34578889999999999999999998887543322 12566678864443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.1e-06 Score=86.81 Aligned_cols=217 Identities=9% Similarity=-0.009 Sum_probs=144.0
Q ss_pred ceeeEEecCCCC--CeEEEEEcCCCCCEEEEEeC--CCcEEEEEcCCceeeEeecccc-CCeEEEEEcCCCCEE-EEEeC
Q 001363 833 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNIL-VSSGG 906 (1092)
Q Consensus 833 ~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l-~s~s~ 906 (1092)
.+.+.++. |.. ....++|++ ++.+.++.+. ++.|.++|+.+++.+..+.-.. .-...+++. ++.| ++.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34555664 443 368999999 6655554443 5799999999999888865211 122345554 4444 44556
Q ss_pred CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceeeeeeccCC----CCCE
Q 001363 907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI 981 (1092)
Q Consensus 907 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h----~~~v 981 (1092)
++.+.++|..+.+.... +... .. ....+++||+.+.++ .+++|.++|..+.+.+..+..+. -..+
T Consensus 85 ~~~v~viD~~t~~v~~~--i~~g-~~-------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKN--FTHQ-MK-------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEE--EECC-SS-------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEE--EECC-CC-------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 88999999998764432 2221 01 124477788877774 45789999999988877765432 1246
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCC---CCccccccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001363 982 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 982 ~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w 1058 (1092)
..+.|. ||+..+....++.|.+-|..+++...++......+. ..+....-+..++++|+....++++...+.|.+-
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 788888 786555555678999999999999999875321110 0011123446789999655678888889999999
Q ss_pred ecCCCC
Q 001363 1059 EPNEPG 1064 (1092)
Q Consensus 1059 ~~~~~~ 1064 (1092)
++.+..
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 986543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.6e-05 Score=91.10 Aligned_cols=383 Identities=11% Similarity=0.038 Sum_probs=202.3
Q ss_pred EEEEEeC-CCcEEEEEC-CCCceeEEEecCCcC-----------eEEEeecccC--CccEEEEEecCCeEEEEEcCCCCc
Q 001363 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKE--NIHFIFSISVDGKIKAWLYDSLGA 521 (1092)
Q Consensus 457 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~~~~~-----------v~~i~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~ 521 (1092)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.+.. ...+++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 3666666 889999999 899999877543211 0122331111 112378888999999999999988
Q ss_pred eEEecCCCC----ceEE-EEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccccC----------------
Q 001363 522 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH---------------- 578 (1092)
Q Consensus 522 ~~~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~---------------- 578 (1092)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|..+|+.+-.+.......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 876544321 1111 111 244 444443211 125789999999999987765432000
Q ss_pred ------------------Cce-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEeCCCCCC
Q 001363 579 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 579 ------------------~~v-~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
..+ ..+++.++...++.++.+ +.|..+|..+|+.+..++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 000 134566777888887765 379999999999998887543211
Q ss_pred ----CCce-EEEc---cCC---CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecC
Q 001363 624 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1092)
Q Consensus 624 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1092)
.... +.+. .+| ..++.++.+|.++++|..+++.+.........-+.-.+. ...+...+..
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~ 372 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP 372 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence 0111 2222 467 567778899999999999998776543211000000000 0000000000
Q ss_pred CCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCc
Q 001363 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1092)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~ 772 (1092)
...+ .+.....+..|.......-..++++|+...+++...+....++-.+..
T Consensus 373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~------ 424 (599)
T 1w6s_A 373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP------ 424 (599)
T ss_dssp GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------
T ss_pred ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc------
Confidence 0000 000000111111111122235788999888877776633322211000
Q ss_pred ccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEc
Q 001363 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 852 (1092)
Q Consensus 773 ~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 852 (1092)
...+.. .-..-..+..+|.+........|.+..||+.+++.+.+.......... .+.
T Consensus 425 ------------~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~ 481 (599)
T 1w6s_A 425 ------------YKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-TMA 481 (599)
T ss_dssp ------------CCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-CEE
T ss_pred ------------ccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-ceE
Confidence 000110 000000011122110000002477899999999887776422111111 122
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCe-EEEEEcCCCCEEE
Q 001363 853 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV 902 (1092)
Q Consensus 853 ~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~l~ 902 (1092)
. .+.+++.++.||.++.||.++|+.+.+++-..+.+ .-+.+..||+..+
T Consensus 482 t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 482 T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred e-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 2 35577789999999999999999998886433221 2245556776433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-05 Score=93.92 Aligned_cols=167 Identities=9% Similarity=0.067 Sum_probs=107.5
Q ss_pred EEEEcCCCCCEEEEEeCC----------------CcEEEEEcCCceeeEeecc--cc--------CCeEEEEEcCCCC--
Q 001363 848 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFSDALN-- 899 (1092)
Q Consensus 848 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~spdg~-- 899 (1092)
.+++.+ +...++.+..+ +.|..+|..+|+.+..++. |. .++. +....+|+
T Consensus 239 ~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~ 316 (571)
T 2ad6_A 239 WYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMT 316 (571)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEE
T ss_pred eEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEE
Confidence 356777 45566666532 3599999999998877653 21 2221 22234774
Q ss_pred -EEEEEeCCCcEEEEEcCCCceeeeeeeec-C---------CCCc-------------------CCC--CCceEEEEccC
Q 001363 900 -ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P---------DGVM-------------------TLA--PSETHIQFHKD 947 (1092)
Q Consensus 900 -~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-~---------~~~~-------------------~~~--~~v~~l~~s~d 947 (1092)
.++.++.+|.+.+.|..+++..-...+.. . .+.. ... ..-..++|+|+
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence 57788899999999999987544322111 0 0000 000 00135788998
Q ss_pred CCEEEEE-e-------------------------------------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecC
Q 001363 948 QTRFLLV-H-------------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCD 989 (1092)
Q Consensus 948 g~~la~~-~-------------------------------------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d 989 (1092)
..++.+. . ++.|..||..+++.+.+...+ ..+.+..+...
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~ 474 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTK 474 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEET
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEEC
Confidence 8877763 2 367999999999887664322 23333334445
Q ss_pred CCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 990 CRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 990 g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
+..+++++.||.|+.||..+|+.+.++..
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 66788899999999999999999988874
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=5.6e-05 Score=88.50 Aligned_cols=167 Identities=14% Similarity=0.160 Sum_probs=106.8
Q ss_pred EEEEcCCCCCEEEEEeC--------------------C----CcEEEEEcCCceeeEeecc--cc--------CCeEEEE
Q 001363 848 SLAFNPHDNNVIAIGMD--------------------D----STILIYNARSSEVISKLEG--HS--------KRVTGLV 893 (1092)
Q Consensus 848 ~l~~s~~d~~~lasg~~--------------------d----g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~ 893 (1092)
.++++| +..+++.+.. | +.|.-+|..+|+.+..++. |. .++. +.
T Consensus 250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~ 327 (582)
T 1flg_A 250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD 327 (582)
T ss_dssp CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence 467777 5567766663 2 5899999999999887753 32 1221 12
Q ss_pred Ec-CCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeec------------------CCCCc-----------------C
Q 001363 894 FS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT------------------PDGVM-----------------T 934 (1092)
Q Consensus 894 ~s-pdg~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~------------------~~~~~-----------------~ 934 (1092)
.. .+|+ .++.++.+|.++++|..+++..-...... ..... .
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~ 407 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP 407 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence 21 4674 78889999999999999987553222110 00000 0
Q ss_pred CC--CCceEEEEccCCCEEEE-Ee---------------------------------CCcEEEEEcCCceeeeeeccCCC
Q 001363 935 LA--PSETHIQFHKDQTRFLL-VH---------------------------------ETHLAIYEAEELTCLKQWFPISS 978 (1092)
Q Consensus 935 ~~--~~v~~l~~s~dg~~la~-~~---------------------------------d~~i~lwd~~~~~~~~~~~~~h~ 978 (1092)
.. ..-..++++|+..++.+ .. ++.|.-||+.+|+.+-+...+
T Consensus 408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-- 485 (582)
T 1flg_A 408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-- 485 (582)
T ss_dssp TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--
T ss_pred CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--
Confidence 00 00124677877665554 21 467999999999887654322
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 979 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 979 ~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
.++..-.....|.++++++.||.++.||..+|+.+.++..
T Consensus 486 ~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 486 LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 2222222333566888899999999999999999998874
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.58 E-value=6.3e-06 Score=83.16 Aligned_cols=186 Identities=13% Similarity=0.065 Sum_probs=130.0
Q ss_pred eeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCe-EEEeecccCCccEEEEEecCCeEEEEEcCCCC
Q 001363 444 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1092)
Q Consensus 444 v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 520 (1092)
...+.|+ ++. ++++.+.+| .|+++|+++|+.+.++....... ..+++ .+ +.+.+..-.++.+.++|..+.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCc
Confidence 4778898 664 667777666 89999999999998886433221 22443 22 2445555568999999999999
Q ss_pred ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeC
Q 001363 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
.+..+...... ..+++|++.|+... +...|.++|..+.+.+..+..... ....++.+.+. +|...+..-.
T Consensus 119 ~~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 119 QVRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp EEEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 88877654422 34457888887763 256799999999999888765320 11234556776 6654444447
Q ss_pred CCcEEEEECCCCceEEEEeCCCC----------CCCCceEEEccCCCEEEEEeCC
Q 001363 599 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
++.|.+.|..+++.+..+...+- ....+.+||+|+++.|.+.+..
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 88999999999999999876421 1234789999998888877763
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.53 E-value=0.006 Score=74.65 Aligned_cols=571 Identities=13% Similarity=0.077 Sum_probs=299.1
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
...|.++.-..+|...+ |+.+| +..||-.+ ...... . -......|.++....+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~lWi--gT~~G-L~ryDG~~---~~~~~~-----~----------~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWI--GSNKG-LFSYDGYS---TQQHFT-----Y----------GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEEE--EESSC-EEEECSSC---EEECSC-----T----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCEEE--EECCC-ccccCCCc---eEEEEc-----c----------CCCCCceEEEEEEcCCC-cEEE
Confidence 34799999999997444 44555 55666321 111000 0 00123568888877766 5556
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-----cCCcCe
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPV 488 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v 488 (1092)
|+.+| +..||..++..... .......|.++.. .+|. |..++.+ -+..+|..+++.. .+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~~---~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQP---ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECCC---SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEECc---ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66666 78999887532110 0112234776654 4554 4444544 6888998776543 331 112456
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC----CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
.++.. +.++.+.+ ++.+| +..++..+...... ... ....|.++....++..|..+.. +-+..+|..
T Consensus 149 ~~i~~--d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIR--TKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEE--CTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEE--cCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 66655 33444444 55544 66677655432211 111 1224778888777775555542 138889988
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-----CCCCCceEEEccCCCEEE
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~ 638 (1092)
+++........ ...|.++....++... .|+.+ -+.+++..++.......... ....|.++....+|. |.
T Consensus 220 ~~~~~~~~~l~---~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 293 (758)
T 3ott_A 220 TGQIKQTEAFH---NNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IW 293 (758)
T ss_dssp TTEEEEEEEEE---EEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EE
T ss_pred CCeEEeccCCC---CCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EE
Confidence 77653322111 2468888887777644 45544 58888887765433221110 112356666666665 44
Q ss_pred EEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001363 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~ 718 (1092)
+|+..| +.++.... ..... ....
T Consensus 294 iGT~~G-l~~~~~~~--~~~~~-----------------------------------------------------~~~~- 316 (758)
T 3ott_A 294 LGTDYG-ISLSRYNS--ALQFI-----------------------------------------------------PISQ- 316 (758)
T ss_dssp EEESSS-EEEECCCC---CEEE-----------------------------------------------------EHHH-
T ss_pred EEeCCc-ccccccCC--ceeEE-----------------------------------------------------eccc-
Confidence 455555 43332111 00000 0000
Q ss_pred cCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCC
Q 001363 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 798 (1092)
.........|.++....+|...+.+ .+| +..++...... .....+...... ..+
T Consensus 317 ---------~~~~~~~~~v~~i~~D~~g~lWiGt-~~G-l~~~~~~~~~~---------~~~~~~~~~~~~----~~l-- 370 (758)
T 3ott_A 317 ---------ITGTGDGNQFYSLFRDSKGFYWFGG-ANG-LIRFTDPAGER---------HDAIWYRMGDKT----YPL-- 370 (758)
T ss_dssp ---------HSCSCCCCBEEEEEECTTCCEEEEE-TTE-EEEESCTTSSC---------CCCEEECTTCSS----SCC--
T ss_pred ---------CCCCCCCceEEEEEEcCCCCEEEee-CCc-ceeeccccccc---------ceeEEeccCCcC----CCC--
Confidence 0000022357777777778755544 455 33333221100 000111100000 001
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--cC----CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 001363 799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHDNNVIAIGMDDSTILIYN 872 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1092)
....|.++.-.++|++.+.. ++-+..||..+++...-. .. ....|.++...+ ++. |-.|+..+-+.++|
T Consensus 371 --~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 371 --SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVD 445 (758)
T ss_dssp --SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEE
T ss_pred --CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEc
Confidence 23568888888888876644 667999998877654321 11 224578888876 554 55577766688888
Q ss_pred cCCc-----eee---Eeec---c-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001363 873 ARSS-----EVI---SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 873 ~~~~-----~~~---~~l~---~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
..+. ... ..+. + ....|.++...++|++.+.++..+-|..+|..+++... +.. .... ....+.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~~-~~~~-~~~~~~ 520 (758)
T 3ott_A 446 KHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LFA-DELT-GEKSPN 520 (758)
T ss_dssp HHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---ECT-TTSC-GGGCEE
T ss_pred cccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ecC-CCcC-CCcccc
Confidence 6531 111 1111 1 12358999999999877644444558889988755332 111 1100 012477
Q ss_pred EEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccc
Q 001363 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus 941 ~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
++....+|.+.+.+. +.+..|+..++....-...+ ....|.++... +|. |..++..| +..+|..+.+... +.
T Consensus 521 ~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~-- 593 (758)
T 3ott_A 521 YLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN-- 593 (758)
T ss_dssp EEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C---
T ss_pred eEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec--
Confidence 888888998887654 56888887665432210111 13567888764 665 44455555 7788888776542 11
Q ss_pred cccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1020 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1020 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
++.. .+. -++...+ ...|..|+.+|-+ .++..
T Consensus 594 --~~~~----~~~-~~~~~~~--~G~l~fG~~~Gl~-~f~p~ 625 (758)
T 3ott_A 594 --MTNK----RFT-SLLFDPK--EDCVYLGGADGFG-ISHSN 625 (758)
T ss_dssp ---CCC----CCS-EEEEETT--TTEEEEECBSEEE-EEEC-
T ss_pred --CCCC----cee-eeEEECC--CCcEEEecCCceE-EEChh
Confidence 1111 122 1222233 3678888888754 45554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-05 Score=97.51 Aligned_cols=248 Identities=9% Similarity=-0.010 Sum_probs=133.6
Q ss_pred CceEEeec-CCCceEEEEEcCCC----cEEEEecCCC-CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001363 336 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 336 ~V~~v~~s-pdg~~llasg~~dg----~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
.+...+|| |||++++.+.+.+| +|+++|+.+| +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 67889999 99996555544443 4999999998 63311 0 10 1134688999999
Q ss_pred EEEEEeCC-----CEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEe-CCCcEEEEECCCCc-ee--E
Q 001363 410 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y 479 (1092)
Q Consensus 410 ~las~~~d-----~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vwd~~~~~-~~--~ 479 (1092)
.|+....+ ..|.++++.++...... .+. ........+.|||||+++++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99887654 36888888776422111 222 223346678999999963333322 23468888988762 22 3
Q ss_pred EE-ecCCcCeEEEeecccCCccEEEEEecC--C--eEEEEEcCCCCceEE-ecCCCC--ceEEEEEccCCCEEEEEecCC
Q 001363 480 SF-EGHGAPVYSLCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 480 ~~-~~~~~~v~~i~~~~~~~~~~l~s~~~d--g--~i~vwd~~~~~~~~~-~~~~~~--~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.+ ........++.|+ .++.+++....+ + .|..+++.+...... +..+.. .+..+ ++++..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~--~~~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESI--AVRSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEE--EECSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEE--EEECCEEEEEEE-e
Confidence 33 2334444555432 133344444443 2 466666654222112 222222 33444 445666665543 2
Q ss_pred CCceeEEEEeC-------CCCeEEEEEeeccccCCceEEEEE----cCCCCEE-EEEeCC---CcEEEEECCCCce
Q 001363 552 EGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQL 612 (1092)
Q Consensus 552 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l-~~~s~d---g~i~iwd~~~~~~ 612 (1092)
++...|+++++ .+++....+.... ...+..+.+ ++++..+ ++.+.. +.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34667888886 4443123332111 112233322 3455444 443322 4577788877764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7.1e-06 Score=82.78 Aligned_cols=184 Identities=12% Similarity=0.109 Sum_probs=125.4
Q ss_pred eeEEEEecCCCEEEEEe-CC--eEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeE
Q 001363 805 VPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s-dg--~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1092)
...+.|+ ++.++.+.+ +| .|+++|+.+++.+..+.-.... .-.+++. ++++.+....++.+.+||..+.+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence 4688898 666666555 44 7999999999999887644322 2335554 34555555668999999999999999
Q ss_pred eeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcE
Q 001363 881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 959 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i 959 (1092)
++..-. ....+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|++.+.. .++.|
T Consensus 122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~I 194 (262)
T 3nol_A 122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNKI 194 (262)
T ss_dssp EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCeE
Confidence 887422 223444678877776667889999999876554333321 11110 134557776 77665554 56789
Q ss_pred EEEEcCCceeeeeeccC---------C--CCCEEEEEEecCCCEEEEEEC
Q 001363 960 AIYEAEELTCLKQWFPI---------S--SVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~---------h--~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
.+.|..+|+.+..+-.+ + ..-...++|+|+++.|++.+.
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999988775432 0 235688999999888877764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=7.7e-05 Score=80.82 Aligned_cols=268 Identities=10% Similarity=0.033 Sum_probs=149.0
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeee--eeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK--VWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
.+.+.-....+++|+++|+ ++.++..++.|..||..++..... ... .+....|..... .........+..+++.+
T Consensus 13 ~~~g~~~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 13 LIEAPSYAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTD-AEKRPLCGRTYDISYNL 89 (322)
T ss_dssp EEECSSSCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCC-GGGHHHHCCEEEEEEET
T ss_pred ecCCccCCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccc-hhccccCCCCceEEEcC
Confidence 3444334678899999998 566777889999999877653311 000 000000000000 00000113578899998
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCcccceE-EEcc-cccceeEEEEec-CCCcEEEEEEeC-----------------CC
Q 001363 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD-----------------DK 465 (1092)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~-~~~~-h~~~v~~~~~s~-d~~~l~l~s~~~-----------------d~ 465 (1092)
+|+ |.++...+.|..+|..++.. .... ...+ .......+++.+ +|. +.++... ++
T Consensus 90 ~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 90 QNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp TTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred CCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCc
Confidence 554 55554455588888776532 1111 1111 113467899999 887 5554322 36
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEE-EEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEccCCC
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~ 542 (1092)
.|..||..+++....... ....+.++++ +++.+|+ +-+..+.|.++++.... ....+....+ ...+++.++|+
T Consensus 166 ~v~~~d~~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH 241 (322)
T ss_dssp EEEEEETTTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC
T ss_pred eEEEEeCCCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC
Confidence 789999877764332222 2234567774 4666554 44567899999987532 1111111222 67899999998
Q ss_pred EEEEEecCC------CCceeEEEEeCCCCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001363 543 RLFSCGTSK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 543 ~l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
..++..... ...+.|..+|.. ++.+..+...... ...+..+++ .++..+++....+.|.++++..
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 766654210 013568889874 7777766643210 134566666 3444444444677888888753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-05 Score=77.32 Aligned_cols=186 Identities=10% Similarity=0.110 Sum_probs=128.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
..-...+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++. +.+..-.++.+.+||.++.
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTT
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcC
Confidence 3445778887 4666677788889999999999887754 332 2333223445555 4445667899999999999
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CC---ceEEEEEccCCCEEEEEecC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GL---GCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~---~i~~~~~s~dg~~l~~~~~~ 550 (1092)
+.+.++..... -..++. |+..|+.+..++.|.++|..+.+....+... .. .+..+.+. +|+ |++...
T Consensus 127 ~~~~ti~~~~e-GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw- 198 (268)
T 3nok_A 127 QRERTTRYSGE-GWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW- 198 (268)
T ss_dssp EEEEEEECSSC-CCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET-
T ss_pred cEEEEEeCCCc-eeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC-
Confidence 99999975332 234443 4567777777999999999988876655432 22 34556666 775 444432
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccc----------cCCceEEEEEcCCCCEEEEEeC
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQL----------QHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
....|.+.|+.+|+.+..+..... .....+.++++|+++.|++.+.
T Consensus 199 --~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 --HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp --TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred --CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 245799999999999988775311 1246789999999887777664
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.8e-05 Score=83.31 Aligned_cols=244 Identities=10% Similarity=0.001 Sum_probs=147.8
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEc-----------------ccccceeEEEEec-CCC
Q 001363 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PCK 454 (1092)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~h~~~v~~~~~s~-d~~ 454 (1092)
.+.-.....++|.++|+++.++..++.|..|+..+++. ....... .....+..+++.+ +++
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~ 93 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ 93 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence 33334566789999999888888889999999876532 1111000 0123578899998 665
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeEEEec-----CCcCeEEEeecccC-CccEEEEEec-----------------CCeE
Q 001363 455 QISVITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKE-NIHFIFSISV-----------------DGKI 511 (1092)
Q Consensus 455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~i~~~~~~-~~~~l~s~~~-----------------dg~i 511 (1092)
|+.+...+.|..+|..+++. ..+.. .......+++ .+ +|.+.++... +|.|
T Consensus 94 ---l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 94 ---LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp ---EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred ---EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 44444445588899776542 22221 1123566777 44 5556665432 3668
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCC
Q 001363 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
..+|..+........ .......++++++|+.|+.+.. ..+.|+.++..... ....+.... + ...+++.++
T Consensus 168 ~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~ 239 (322)
T 2fp8_A 168 IKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNAD 239 (322)
T ss_dssp EEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTT
T ss_pred EEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCC
Confidence 888776554322211 1123456899999997776643 24569999887521 112222222 3 778999999
Q ss_pred CCEEEEEeC----------CCcEEEEECCCCceEEEEeCCCC--CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 590 KDQILAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 590 ~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
|+..++... .+.|..+|. .++.+..+....+ ...+..+++ .+++++++...++.|..+++..
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 986666544 467888887 4777777765432 234566666 4566666555678899988764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.4e-06 Score=84.16 Aligned_cols=183 Identities=9% Similarity=0.080 Sum_probs=124.4
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe
Q 001363 804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 881 (1092)
-...+.|+. +.++.+.+ +|.|+++|+++++.+..+ -... ..-.+++. ++++.+....++.+.+||..+.+.+.+
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 346788873 44444444 588999999999988887 2222 22346665 455666667789999999999999998
Q ss_pred eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEE
Q 001363 882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 960 (1092)
Q Consensus 882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~ 960 (1092)
+..- ..-..++ +|++.|+.+..++.|.++|..+.+......+....... ..+..+.|. +|++.+.. .++.|.
T Consensus 132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCeEE
Confidence 8742 2223344 67888888777899999999987755533332211111 135667777 77655554 567899
Q ss_pred EEEcCCceeeeeeccC------------CCCCEEEEEEecCCCEEEEEE
Q 001363 961 IYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
+.|..+|+.+..+-.+ -..-...++++|+++.|++.+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999987765322 123568899999876666555
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00046 Score=74.58 Aligned_cols=234 Identities=9% Similarity=0.038 Sum_probs=133.0
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001363 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
...+.++.+.+ +..++++..+.|.. ....|+.-.... .+...+..+++.+ ++.+++++ .+|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence 44678899986 55666665664433 222233322222 2334577888876 66666655 4564432 2222322
Q ss_pred e-EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCC
Q 001363 879 I-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957 (1092)
Q Consensus 879 ~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~ 957 (1092)
= ....++...+..+++.+++.+++.+...+..+-+|-.... ...+.... . ..+..+++++++++++++.++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t---W~~~~~~~--~---~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA---WEPHNRTT--S---RRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS---CEEEECCS--S---SCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc---eeECCCCC--C---CccceeEECCCCCEEEEeCCc
Confidence 1 1223455678999999998888766444333333321111 11222211 1 257899999999988888888
Q ss_pred cEEEEEcCCceeeeeeccC---CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccce
Q 001363 958 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus 958 ~i~lwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
.+++.+...|+.-.....+ +...+.++.+.+++..++++ .+|.| ++..+.|+.-..+......+. .++
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~-- 296 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY-- 296 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC--
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE--
Confidence 8877653434443332212 23468899999888877755 57776 566677755544431111111 244
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEe
Q 001363 1035 AIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1035 ~~~~~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
++.|.+ +..+++++.+|.|.-++
T Consensus 297 ~v~~~~--~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 297 KILFFS--PDQGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred EEEEEC--CCceEEEcCCceEEEEc
Confidence 455543 35677888899776654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.44 E-value=0.0001 Score=79.12 Aligned_cols=228 Identities=14% Similarity=0.113 Sum_probs=138.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-CC-cEEEEECCC
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK-TIKVWDAVT 474 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~-~i~vwd~~~ 474 (1092)
.....++|+++|+++++-..++.|..||..++. ... + ........+++.++|+ ++++... ++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 456789999999977776678899999987632 211 1 2234688999999998 4554433 32 477778788
Q ss_pred CceeEEEec-CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-e-------c--CCCCceEEEEEccCCCE
Q 001363 475 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 543 (1092)
Q Consensus 475 ~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~dg~~ 543 (1092)
++....... .......++.. .++..+++...++.|.++|......... . . ..-.....+ ++|++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 875433221 11222344432 2334455554688888888765321111 0 0 111133445 889988
Q ss_pred EEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 001363 544 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
|+.+.. ..+.|+.++... ++. ...+.. . .....+++.++|+.+++....+.|.+++.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~-~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE-Q---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE-S---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEec-c---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 877653 356799999864 332 112211 1 245668899999877776678899999975 65533222222
Q ss_pred CCCCCceEEEc---cCCCEEEEEeCC
Q 001363 621 GLPENPRICFN---KNGTLLAVIANE 643 (1092)
Q Consensus 621 ~~~~v~~v~~s---~~~~~l~~~~~d 643 (1092)
......+++|. |+++.|++.+..
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccCCceEEEEecccCCCCEEEEECCC
Confidence 23456889998 888877777654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-05 Score=97.37 Aligned_cols=277 Identities=10% Similarity=0.040 Sum_probs=156.1
Q ss_pred EEeecC-CCceEEEEEcCCC-----------cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 339 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 339 ~v~~sp-dg~~llasg~~dg-----------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
++++.| +|+ +++.|+.+. .+.+||..+++-.... .....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCCC
Confidence 567777 787 777776432 5788888877533210 01122333445678889
Q ss_pred CCCEEEEEeC-CCEEEEEEccCCCcccceEEEcccccc-eeEEEEecCCCcEEEEEEe-CC-----CcEEEEECCCCcee
Q 001363 407 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRT 478 (1092)
Q Consensus 407 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~d~~~l~l~s~~-~d-----~~i~vwd~~~~~~~ 478 (1092)
+|+.+++|+. +..+.+||..+++-.. ...+ +..+ -.+++..++|+ +++.|+ .+ ..+.+||..+++..
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 9999999984 4579999998763221 1111 1111 13455667888 777777 44 57999999887643
Q ss_pred EEEecC-CcCeE----EEeecccCCccEEEEEecCC---------eEEEEEcCCCCceEEecCC---------CCceEEE
Q 001363 479 YSFEGH-GAPVY----SLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRM 535 (1092)
Q Consensus 479 ~~~~~~-~~~v~----~i~~~~~~~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~---------~~~i~~~ 535 (1092)
.. ... ..+.. ...+ ..++..++.++.+| .+..||..+.......... ...-.++
T Consensus 328 ~~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 328 SL-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EE-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred eC-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 32 100 00000 0011 12445556665554 4567887765533221111 1122344
Q ss_pred EEc-cCCCEEEEEecCCC----Cce---eEEEEeCCCCeEEEEE--eeccccCCceEEEEEcCCCCEEEEEeCC------
Q 001363 536 AYS-ANGRRLFSCGTSKE----GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------ 599 (1092)
Q Consensus 536 ~~s-~dg~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~d------ 599 (1092)
.+. .+++.++.++.+.. ... .+.+||..+....... .... ...-.+++..|+++.++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcC
Confidence 444 36777777764321 011 6888998877654433 1111 1223445667899999998754
Q ss_pred -----CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 600 -----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 600 -----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
..+.+||..+.+....-.............+.|+|+.++.|+.
T Consensus 483 ~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988765432222211112234556789999999885
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00079 Score=73.37 Aligned_cols=249 Identities=11% Similarity=-0.012 Sum_probs=154.5
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
.+..+|.+..+++. ++++ ....|+..++........ +. ....+..++|.+.+..|..
T Consensus 33 ~d~~~C~~~~~~~~-ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCCE-EEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCce-eEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEE
Confidence 34667888777553 4444 235688888766543321 22 3345889999987666665
Q ss_pred E-eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEe
Q 001363 414 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 414 ~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 492 (1092)
+ ...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.+++.......+.........++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 5 456789999988754221 12222234578999986664 455666678999999775543333333345567888
Q ss_pred ecccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 493 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
+.+. ++.++++-... +.|...+++...........-.....++++|++..|+.+-. +.+.|..+|.........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8653 34455555555 78888888765444433333446789999998888877643 3567999998754333333
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
.... .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus 242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 456677773 34444445567788888876776666554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00016 Score=73.52 Aligned_cols=207 Identities=7% Similarity=-0.005 Sum_probs=134.6
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+.|.|-.+++..++|+|++..|.++...++.|...|.. |+.+.... +.+ ....-.|++.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~ 80 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD 80 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence 46777777999999999887788888888999999998 77665422 222 256788999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEc------ccccceeEEEEecCCCcEEEEEEeCCC--cEEEEEC-CCCcee
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDA-VTGSRT 478 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~-~~~~~~ 478 (1092)
+.++++.-.++.+.++++.....+....... ........++|+|+++. |+++.... .|..|+- ..+..+
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCce
Confidence 9877776567889999987654322111111 12345689999999985 33333333 4555541 112222
Q ss_pred EEEe-------cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEccCCC
Q 001363 479 YSFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGR 542 (1092)
Q Consensus 479 ~~~~-------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~dg~ 542 (1092)
..+. .+...+.+++++|. .+++++.....+.+.++|.... .+..+.... .....++|.++|+
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred eeecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 2221 12345678888876 4578888888888999987644 333332221 2567899999998
Q ss_pred EEEEEecCCCCceeEEEEeC
Q 001363 543 RLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~ 562 (1092)
..++ +. .+.++.+..
T Consensus 237 lyIv-sE----~n~~y~f~~ 251 (255)
T 3qqz_A 237 IYIV-SE----PNRFYRFTP 251 (255)
T ss_dssp EEEE-ET----TTEEEEEEC
T ss_pred EEEE-cC----CceEEEEEe
Confidence 5555 32 335666654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00014 Score=78.13 Aligned_cols=231 Identities=12% Similarity=0.084 Sum_probs=137.0
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC-C-cEEEEEcCCceee
Q 001363 803 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-S-TILIYNARSSEVI 879 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-g-~v~iwd~~~~~~~ 879 (1092)
.....++++++|+++++.. ++.|..||.... ....+. .......+++++ +++++++.... + .|..++..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4567899999999766654 688999998753 333332 335688999999 78766655433 2 4777787777653
Q ss_pred Eeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee---ee--cCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 880 SKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ--TPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 880 ~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~--~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
.... ........++..+++..+++-..++.|.++|..++....... +. ...+.. .....+ ++|++.|.+
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence 3221 112223455666666556655568888888876542111000 00 011111 123455 899987776
Q ss_pred E--eCCcEEEEEcCC-cee--eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCcc
Q 001363 954 V--HETHLAIYEAEE-LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028 (1092)
Q Consensus 954 ~--~d~~i~lwd~~~-~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1092)
+ ..+.|..|++.. +.. ...+.. ......+++++||+++++....+.|.+++.. |+........ .+
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--~~----- 253 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--QG----- 253 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--GT-----
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--cc-----
Confidence 4 457899999874 332 111111 1345678999999987777777899999975 6553211100 11
Q ss_pred ccccceEEEEC---CCCCCEEEEEeCCC
Q 001363 1029 LHVYPHAIAAH---PLKPTQFAVGLTNG 1053 (1092)
Q Consensus 1029 ~~v~~~~~~~~---p~d~~~l~~~~~dg 1053 (1092)
.-.+.+++|. | |+..|.+++..+
T Consensus 254 -~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 -VIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp -CTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred -cCCceEEEEecccC-CCCEEEEECCCC
Confidence 1236678898 6 455565555443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00015 Score=72.44 Aligned_cols=188 Identities=13% Similarity=0.116 Sum_probs=125.4
Q ss_pred CCCcEEEEEECCCCCEEEEEeCC--CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
...-...+.|++ +.+..+.+.+ ..|+.+|+.+|+.++.. .+..+ ........+++. +.+..-.++.+.++|.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~---~fgeGi~~~~~~-ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPPP---YFGAGIVAWRDR-LIQLTWRNHEGFVYDL 92 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCTT---CCEEEEEEETTE-EEEEESSSSEEEEEET
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCCC---cceeEEEEeCCE-EEEEEeeCCEEEEEEC
Confidence 345677899986 5556666654 48999999999876643 22222 222333334554 4445567899999999
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-----CceEEEEEccCCCEEEEE
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~s~dg~~l~~~ 547 (1092)
++.+.+.++...... ..++. ++..|+.+..++.|.++|..+.+....+.... ..+..+.+. +|+.. +.
T Consensus 93 ~tl~~~~ti~~~~~G-wglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly-an 165 (243)
T 3mbr_X 93 ATLTPRARFRYPGEG-WALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL-AN 165 (243)
T ss_dssp TTTEEEEEEECSSCC-CEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE-EE
T ss_pred CcCcEEEEEeCCCCc-eEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE-EE
Confidence 999999999754332 34443 44556666678899999999888766554321 234455554 66544 43
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccc----------cCCceEEEEEcCCCCEEEEEeC
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQL----------QHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
... ...|.+.|+.+|+.+..+..... .....+.++++|+++.|++.+.
T Consensus 166 vw~---s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VWL---TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ETT---TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECC---CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 321 44699999999999988874321 1246789999999888888774
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.36 E-value=6.7e-05 Score=90.13 Aligned_cols=121 Identities=12% Similarity=0.185 Sum_probs=76.5
Q ss_pred EEEEcc-CCCEEEEEecCCC-------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEE
Q 001363 534 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI 604 (1092)
Q Consensus 534 ~~~~s~-dg~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~i 604 (1092)
..++.+ +++.++.++.+.+ ....+.+||+.+++..........+.....++++..++..+++|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456677 8888888775432 123689999998765432222111112334567788999888887 4568999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe-CC-----CeEEEEECCCCc
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPESN 655 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iw~~~~~~ 655 (1092)
||..+.+....-..+.. ..-..++..+++++++.|+ .+ ..+.+||..+.+
T Consensus 270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 99988765544332221 1123566667899999988 34 457778776653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.1e-05 Score=74.90 Aligned_cols=187 Identities=10% Similarity=0.037 Sum_probs=125.7
Q ss_pred CCCeeEEEEecCCCEEEEEe-C--CeEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001363 802 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~s-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
..-...+.|++ +.++.+.+ + ..|+.+|+.+++.+....-.... --.+++. ++++......++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34456889986 45555544 2 47999999999999887644332 2345554 45566666778999999999999
Q ss_pred eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eC
Q 001363 878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 956 (1092)
Q Consensus 878 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d 956 (1092)
.+.++..-. .-..+ ++|++.|+.+..++.|.++|..+.+......+....... ..+..+.+. +|+..+.. .+
T Consensus 97 ~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~---~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL---DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc---ccceeeEEe-CCEEEEEECCC
Confidence 999887432 22344 457777777677889999999987655433332211111 134556655 67655554 56
Q ss_pred CcEEEEEcCCceeeeeeccC------------CCCCEEEEEEecCCCEEEEEEC
Q 001363 957 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 957 ~~i~lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
+.|.+.|..+|+.+..+-.+ -..-...++++|+++.|++.+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 78999999999988775422 1235688999998877776664
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0013 Score=70.65 Aligned_cols=238 Identities=10% Similarity=-0.039 Sum_probs=144.8
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC---CceeEE-EecCC
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTYS-FEGHG 485 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~~~~~-~~~~~ 485 (1092)
+|+.+.. ..|+..|+.+++... .+ ........++|.+++.. ++++-...+.|..+++.+ +..... +....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 4444444 348888988765332 22 23445789999987664 555666678999999876 222222 32222
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ..+.|...++...
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCCC
Confidence 34567777533 34556666778899999987654444343344567899999977777665431 1357888887543
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
....+.... ......+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 154 -~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 154 -DIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp -CEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred -CeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 333332211 25678999999887777665 5678999998754433333322222234577775 456666666678
Q ss_pred eEEEEECCCCceeeec
Q 001363 645 RIKILETPESNSVDAA 660 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~ 660 (1092)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8999887766554443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00066 Score=75.21 Aligned_cols=249 Identities=11% Similarity=-0.008 Sum_probs=155.1
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
+.-.|.+..+.+ +++++ ....|+..++.++..... . .....+..++|.+.+..|..+
T Consensus 77 d~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~-~~~~~~~gl~~d~~~~~ly~~ 133 (386)
T 3v65_B 77 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------L-NNLENAIALDFHHRRELVFWS 133 (386)
T ss_dssp TSSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------E-CSCSCEEEEEEETTTTEEEEE
T ss_pred CCCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------e-cCCCccEEEEEecCCCeEEEE
Confidence 345677777755 34444 236788888876654321 1 233468899999866666655
Q ss_pred -eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001363 415 -YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 415 -~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.+++.......+.........+++
T Consensus 134 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giav 209 (386)
T 3v65_B 134 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 209 (386)
T ss_dssp ETTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEE
T ss_pred eCCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEE
Confidence 456789999988754211 12222234567899986664 4556666778999987755433334333455678888
Q ss_pred cccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001363 494 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
.+. ++.++++-... +.|...+++...........-.....++++|++..|+.+-. ..+.|..+|.........+.
T Consensus 210 dp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~ 285 (386)
T 3v65_B 210 HPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 285 (386)
T ss_dssp ETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEEC
T ss_pred EcC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEE
Confidence 653 33445554444 77888888765554444444446789999998888877643 35679999986543333332
Q ss_pred eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
... .....+++. .+..+++-...+.|..++..+|+....+..
T Consensus 286 ~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 286 QGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCC---CCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 222 456777773 344445555678888888777777666653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00083 Score=74.38 Aligned_cols=246 Identities=11% Similarity=-0.038 Sum_probs=153.0
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
.|.+..+ ..+|+.+.. ..|+..++.++.... +.........++|.+.+.. ++++-...+.|..+++..+....
T Consensus 80 ~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 80 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp CEEECSS-CCEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred eECCccc-cceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence 3455555 345554433 458888887654222 2223345789999986664 45566667899999987765444
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ....|+.
T Consensus 153 ~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r 229 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEA 229 (386)
T ss_dssp EECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEE
T ss_pred EEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEE
Confidence 33322334456676543 34566666677889888887655444444444567899999988777766431 1367888
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
.++............ ......++++|++..|+.+. ..+.|..+++........+... ......+++ .++.+++
T Consensus 230 ~~~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 230 SSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EETTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred EeCCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEE
Confidence 887654333222221 24578999998777776654 5678999998754443333322 233467777 4456666
Q ss_pred EEeCCCeEEEEECCCCceeeecc
Q 001363 639 VIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
+-...+.|..++..+++....+.
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEc
Confidence 66677888888866665555544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0013 Score=71.76 Aligned_cols=248 Identities=10% Similarity=-0.036 Sum_probs=152.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
..+|.+..++ .+|+.+.. ..|+..++.+.... .+......+..++|.+.+.. ++++-...+.|..+++..+..
T Consensus 35 ~~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp SSCEEESSSC-CEEEEECB-SCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred CCcccccccC-ceeEeecc-cceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence 3455666663 34554433 34777787664321 12223345789999987664 455556678899999887654
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
...+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+...... ...|
T Consensus 108 ~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~I 184 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRI 184 (349)
T ss_dssp EEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCEE
T ss_pred eEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCEE
Confidence 4433333334566777543 345666666778999999886655544444445678999999777776654311 3678
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE
Q 001363 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1092)
+..++............ ......++++|++..|+.+. ..+.|..+++........+... ......+++ .++.+
T Consensus 185 ~r~~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~l 258 (349)
T 3v64_C 185 EASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSL 258 (349)
T ss_dssp EEEETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEE
T ss_pred EEEeCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEE
Confidence 88887644332222211 24678999998877776654 5678999998754443333322 233467777 44556
Q ss_pred EEEEeCCCeEEEEECCCCceeeecc
Q 001363 637 LAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
+++-...+.|..++..+++....+.
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEecCCCCeEEEEEccCCCccEEec
Confidence 6666667888888866665544443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.022 Score=69.56 Aligned_cols=527 Identities=11% Similarity=0.055 Sum_probs=272.2
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.++....+|.. -.|+.+ -+..+|..+++.... .......|.++.. .+| .|..+
T Consensus 63 ~~i~~i~~d~~g~l--WigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWig 118 (758)
T 3ott_A 63 TRIYCGVIIDNTYL--YMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWLG 118 (758)
T ss_dssp SCEEEEEEETTTEE--EEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEEE
T ss_pred ceEEEEEEcCCCcE--EEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEEE
Confidence 46888888888863 334444 478999877532110 0112235777765 345 55556
Q ss_pred eCCCEEEEEEccCCCcccceEEEc-----ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-----
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEID-----AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH----- 484 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~----- 484 (1092)
+.+| +..+|..+++.. .+. .....|.++....+|. +. .|+.+ -+..+|..+++.. .+...
T Consensus 119 t~~G-l~~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g~--lW-igt~~-Gl~~~~~~~~~~~-~~~~~~~~~~ 188 (758)
T 3ott_A 119 ALNG-LYTYQLQSRKLT----SFDTRRNGLPNNTIYSIIRTKDNQ--IY-VGTYN-GLCRYIPSNGKFE-GIPLPVHSSQ 188 (758)
T ss_dssp ETTE-EEEEETTTCCEE----EECHHHHCCSCSCEEEEEECTTCC--EE-EEETT-EEEEEETTTTEEE-EECCCCCTTC
T ss_pred cCCc-ceeEeCCCCeEE----EeccCCCCcCCCeEEEEEEcCCCC--EE-EEeCC-CHhhCccCCCceE-EecCCCcccc
Confidence 6664 888898765421 121 1124588888877777 33 34444 5788887776543 22111
Q ss_pred -CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 485 -~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
...|.++.. +.++..|..|+. +-+..+|..+.............|.++....+|...+.. . . -+.+++..
T Consensus 189 ~~~~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~ 259 (758)
T 3ott_A 189 SNLFVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHND 259 (758)
T ss_dssp SSCCEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCT
T ss_pred ccceeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecC
Confidence 123666655 334444555554 456777766543322111123357788888888766554 2 1 27888887
Q ss_pred CCeEEEEEee----ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe-----CCCCCCCCceEEEccCC
Q 001363 564 EGAIKRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-----AGGGLPENPRICFNKNG 634 (1092)
Q Consensus 564 ~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~v~~s~~~ 634 (1092)
++........ .......|.++....++. |-.|+..| +.++.... . ..... .......|.++.-..+|
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~i~~D~~g 335 (758)
T 3ott_A 260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS-A-LQFIPISQITGTGDGNQFYSLFRDSKG 335 (758)
T ss_dssp TSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTC
T ss_pred CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC-c-eeEEecccCCCCCCCceEEEEEEcCCC
Confidence 7654322211 112235688888887765 45555566 55443322 1 11111 00111246667766666
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceec
Q 001363 635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~ 714 (1092)
.+- +|+.+| +..++..++.... ++.+.
T Consensus 336 ~lW-iGt~~G-l~~~~~~~~~~~~---------------------------------------------------~~~~~ 362 (758)
T 3ott_A 336 FYW-FGGANG-LIRFTDPAGERHD---------------------------------------------------AIWYR 362 (758)
T ss_dssp CEE-EEETTE-EEEESCTTSSCCC---------------------------------------------------CEEEC
T ss_pred CEE-EeeCCc-ceeecccccccce---------------------------------------------------eEEec
Confidence 644 445544 5555443321000 00000
Q ss_pred cccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeee
Q 001363 715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN 794 (1092)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 794 (1092)
... . +.......|.++....+|...+.+ . +-+..|+...... ..+. ..
T Consensus 363 ~~~--~--------~~~l~~~~v~~i~~d~~g~lWigt-~-~GL~~~~~~~~~~------------~~~~--------~~ 410 (758)
T 3ott_A 363 MGD--K--------TYPLSHNRIRHIYEDKEQQLWIAT-D-GSINRYDYATRQF------------IHYN--------IV 410 (758)
T ss_dssp TTC--S--------SSCCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEE------------EEEE--------EE
T ss_pred cCC--c--------CCCCCCCceEEEEECCCCCEEEEe-C-CcHhhcCcCCCcE------------EEee--------cC
Confidence 000 0 000023457777777778755543 3 4455555332211 0000 00
Q ss_pred cCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCc-----eee---EEec---C-CCCCeEEEEEcCCCCCEEEEE
Q 001363 795 DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNVIAIG 862 (1092)
Q Consensus 795 ~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~lasg 862 (1092)
..........|.++...++|.+.+...++-+.++|..+. ... ..+. + ....|.++...+ ++.+.+.+
T Consensus 411 ~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~ 489 (758)
T 3ott_A 411 DNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLL 489 (758)
T ss_dssp CCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEE
T ss_pred CCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEc
Confidence 000000234578888888887666554567888886531 111 1111 1 223588999988 77766534
Q ss_pred eCCCcEEEEEcCCceeeEeecc---ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCc
Q 001363 863 MDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 939 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 939 (1092)
+..+-+..+|..+++....... ....+.++....+|.+.+. +..| |..++..++.... .. ..+.. ...|
T Consensus 490 ~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~---~~-~~gl~--~~~i 561 (758)
T 3ott_A 490 YNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQS---IS-FGSFS--NNEI 561 (758)
T ss_dssp TTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCB---CC-CCC-----CCE
T ss_pred cCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEE---ec-ccCCC--ccce
Confidence 4445588899887764432211 1346788888888877764 4555 8888877654222 11 11111 1357
Q ss_pred eEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEe-cCCCEEEEEECCCcEEEEEcC
Q 001363 940 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 940 ~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
.++... +|.+.+++ ++.+..+|..+.+...--. ....+....+. +||. |..|+.+|- ..++..
T Consensus 562 ~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~G~-l~fG~~~Gl-~~f~p~ 625 (758)
T 3ott_A 562 LSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNM--TNKRFTSLLFDPKEDC-VYLGGADGF-GISHSN 625 (758)
T ss_dssp EEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC----CCCCCSEEEEETTTTE-EEEECBSEE-EEEEC-
T ss_pred EEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecC--CCCceeeeEEECCCCc-EEEecCCce-EEEChh
Confidence 777764 66655544 5568888987765432111 12223344444 4664 555777774 445544
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00084 Score=68.30 Aligned_cols=217 Identities=12% Similarity=0.128 Sum_probs=133.9
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001363 838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 838 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~ 916 (1092)
.+.+-...+..++++|+++.++++...++.|...|.. ++.+..+.- -......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555557899999999555666678888999999998 887777642 22568889999999877776677889999987
Q ss_pred CCce-eeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCC---ceeeeee------ccCCCCCEEEEE
Q 001363 917 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQW------FPISSVPISQAT 985 (1092)
Q Consensus 917 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~---~~~~~~~------~~~h~~~v~~l~ 985 (1092)
.... ..........+..........++++|+++.|.++ ......||.+.. ...+... ...+-..+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6542 1112222111111222457999999999777764 333445555531 1111111 011344678999
Q ss_pred EecCC-CEEEEEECCCcEEEEEcCCCceEEeecccc-ccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 986 FSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 986 fs~dg-~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
|.|.. ++++.+.....+.++|.. |+.+..+.... .... ....-.+-.++++| +++++ ..+.-+.++.+.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l--~~~~~qpEGia~d~-~G~ly-IvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGL--SHNIKQAEGVAMDA-SGNIY-IVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGC--SSCCCSEEEEEECT-TCCEE-EEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCc--ccccCCCCeeEECC-CCCEE-EEcCCceEEEEEe
Confidence 99855 455555566788899976 55665555332 1000 01112346789999 46644 4477776666643
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0022 Score=68.85 Aligned_cols=232 Identities=9% Similarity=-0.066 Sum_probs=139.7
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEccCC---Cccc
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGG---SDAR 432 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~---~~~~ 432 (1092)
..|+..|+.+++.... + .....+..++|++++..|..+. ..+.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6789999887764432 1 2345678999999776666554 5688999998762 2122
Q ss_pred ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC-CeE
Q 001363 433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI 511 (1092)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~i 511 (1092)
. .+...-.....+++.+.+.. ++++-...+.|.+.|++.......+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222235678999876654 4556667889999997754433333333455678888543 33344444333 678
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001363 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
...+++...........-.....+++++++..|+.+-. ..+.|..+|...... +.+............+++. .+.
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCE
Confidence 88887654433333333456789999998888877653 256799999874333 3332211012345677774 344
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 592 QILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
.+++-...+.|..++..+++.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 44455567788888877776555553
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00021 Score=87.05 Aligned_cols=246 Identities=6% Similarity=-0.058 Sum_probs=133.2
Q ss_pred CCCC-cEEEEEEC-CCCCEEEEEeC-C----CEEEEEEccCC-CcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-
Q 001363 394 DPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD- 464 (1092)
Q Consensus 394 ~h~~-~V~~l~~s-pdg~~las~~~-d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d- 464 (1092)
+|.. .+...+|| |||++||.+.. + .+|+++|+.+| +.+.. .+ ......++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~---~~~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KV---SGTNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CE---EEECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cc---cCceeeEEEecCCCE--EEEEEECC
Confidence 4443 78889999 99999997643 2 35999999998 64321 11 122457899999985 3333333
Q ss_pred ----CcEEEEECCCCce--eEEEec-CCcCeEEEeecccCCccEEEEEec---CCeEEEEEcCCCC-ce--EEe-cCCCC
Q 001363 465 ----KTIKVWDAVTGSR--TYSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG-AR--VDY-DAPGL 530 (1092)
Q Consensus 465 ----~~i~vwd~~~~~~--~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~-~~--~~~-~~~~~ 530 (1092)
..|.++++.++.. ...+.. .......+.+ ++||++|+..+. ...|.++|+.+.. .. ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 3688889887753 223322 2233455566 557777776553 3357888887753 22 222 22333
Q ss_pred ceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeEEEE-EeeccccCCceEEEEEcCCCCEE-EEEeCCCc--EEEE
Q 001363 531 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKIW 605 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~--i~iw 605 (1092)
...++.|+ +|..|+..+... .+...|+.+|..++..... +..+. ....+..+.+. ++.+ ++...++. |.++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 44444443 366666555432 3466788899875322122 22222 01134455554 4444 45666675 4555
Q ss_pred EC-------CCCceEEEEeCCCCCCCCceEEE------ccCCCE-EEEEeCC---CeEEEEECCCCc
Q 001363 606 DM-------NKVQLLTTIDAGGGLPENPRICF------NKNGTL-LAVIANE---NRIKILETPESN 655 (1092)
Q Consensus 606 d~-------~~~~~~~~~~~~~~~~~v~~v~~------s~~~~~-l~~~~~d---g~i~iw~~~~~~ 655 (1092)
++ .+++....+..... ...+.+ ++++.. +++.+.. +.+..+++.+++
T Consensus 397 dl~~~~~~~~~g~~~~~l~l~~~---~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 397 MADSQDGVFKAGTGLREVVMEEP---IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp ECCTTTSCCCTTTCCEECCCCCS---SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ecccccccccCCccceEECCCCc---eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 65 34441344432221 223344 345543 3333332 456667766553
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0024 Score=70.91 Aligned_cols=248 Identities=9% Similarity=-0.036 Sum_probs=152.9
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCC
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~ 485 (1092)
+|+.+. ...|+..++.+..... +......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 455443 4568888888654222 2234456889999987664 4555556788999998752 2223333234
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+..-.. ....|+..++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 45667777543 34566666778899999988665555554444567899999977777665421 1356888887654
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
......... ......+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 433333322 25678999999888887765 5678999998765544444432222334566663 345556666678
Q ss_pred eEEEEECCCCceeeecccccCceeee
Q 001363 645 RIKILETPESNSVDAAGVLSDNLRKL 670 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~ 670 (1092)
.|..++..+++....+.........+
T Consensus 312 ~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp SEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred eEEEEEcCCCCceEEEecCCCCCceE
Confidence 88888877776655554333333333
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0046 Score=66.63 Aligned_cols=282 Identities=11% Similarity=0.024 Sum_probs=148.0
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..+.+|.|.+++. ++++|. .|.| +...+.|+.=...... .......+.+++|++ +..++ +
T Consensus 36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~~---------------~~~~~~~~~~i~~~~-~~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTLV---------------LDHSDYRFNSVSFQG-NEGWI-V 95 (327)
T ss_dssp SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCCC---------------CSCCCCEEEEEEEET-TEEEE-E
T ss_pred CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCCC---------------CCCCCccEEEEEecC-CeEEE-E
Confidence 4799999988877 566654 4544 3333444321110000 112345788999986 44444 4
Q ss_pred eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcCeEEEee
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCP 493 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~i~~ 493 (1092)
+..+.|.. ....|+..........+.+.+..+.+.+++. .++.+ .++.|..- .+.|+.-.. ...+...+..+++
T Consensus 96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 45664433 3344543332211112345577888887776 45544 46654332 233433222 2344556788877
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001363 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1092)
.+ ++.+++.+...+..+-+|-....-..........+..+.+.++++.++.+. .+.+++.+...|+....+..
T Consensus 171 ~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~~ 243 (327)
T 2xbg_A 171 SP--SGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELLS 243 (327)
T ss_dssp CT--TSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCBC
T ss_pred cC--CCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEeccC
Confidence 54 556666554433334343211111111223345788899999988766542 34466654333443333322
Q ss_pred c-cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-CCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 574 L-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 574 ~-~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
. ......+..+.+.+++..+++ +.+|.+ .+..+.|+.-..+... .....+..+.|.+++. +++++.+|.|.-++-
T Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 244 PLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 1 001235788889887665555 456766 4555556554444321 1123578898876554 666677887766653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00055 Score=76.93 Aligned_cols=246 Identities=12% Similarity=0.041 Sum_probs=141.5
Q ss_pred CeeEEEEec-CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC-CC----cEEEEEcCCc
Q 001363 804 AVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARSS 876 (1092)
Q Consensus 804 ~v~~~~~s~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg----~v~iwd~~~~ 876 (1092)
....++++| ++..|.++. .+.|+.+|..++...... ........++|++ ++++|+++.. ++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456889998 455565555 478999999876654433 3456688999999 7885555554 22 3444443 33
Q ss_pred eee--EeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 877 EVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 877 ~~~--~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
... ..+. .......++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 222 2222 123456789999 67777776678889999998754321 1222111 14678999999996665
Q ss_pred E--eCCcEEEEEcCC--cee--eeeecc-----CC---------CCCEE-EEEEe--------cCCCEEEEEECCCcEEE
Q 001363 954 V--HETHLAIYEAEE--LTC--LKQWFP-----IS---------SVPIS-QATFS--------CDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 954 ~--~d~~i~lwd~~~--~~~--~~~~~~-----~h---------~~~v~-~l~fs--------~dg~~l~t~~~Dg~i~v 1004 (1092)
+ ..+.|..++... +.. +..+.. +. -.... .++.. ++|.++++-...++|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 557888887653 221 111110 00 11223 45553 34666665556678998
Q ss_pred EEcCCCceEEeecccc--ccC---C--CCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1005 HEASNLEVQCRILSTA--YLR---P--TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1005 wd~~~~~~~~~~~~~~--~~~---~--~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
++ .+|.......... ... . .....--.|..++++|+++.++++=...+.|+.+++.
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 4565443322100 000 0 0000112578899998545566665566788887763
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00047 Score=77.48 Aligned_cols=248 Identities=11% Similarity=0.051 Sum_probs=143.1
Q ss_pred CeeEEEEecC--CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC---C-cEEEEEcCCc
Q 001363 804 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS 876 (1092)
Q Consensus 804 ~v~~~~~s~d--g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g-~v~iwd~~~~ 876 (1092)
....++++|+ +..|..+. .+.|+.+|..+++.... .........+++++ +++++++-... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 44454454 48899999987766544 33556789999999 77754443321 1 2333333222
Q ss_pred ee-eEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE
Q 001363 877 EV-ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1092)
Q Consensus 877 ~~-~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 954 (1092)
.. ...+. .-.....+++.| +|.++++-..++.|+.++..++.... ........ .....++|+|+|+.|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCC-----CCcccEEEeCCCCEEEEE
Confidence 11 01111 233456689999 67777666677889999988665411 11111111 124579999999966664
Q ss_pred --eCCcEEEEEcC--Cceee--eeecc-----C---------CCCCEEEEEE---------ecCCCEEEEEECCCcEEEE
Q 001363 955 --HETHLAIYEAE--ELTCL--KQWFP-----I---------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 955 --~d~~i~lwd~~--~~~~~--~~~~~-----~---------h~~~v~~l~f---------s~dg~~l~t~~~Dg~i~vw 1005 (1092)
..+.|..++.. ++... ..+.. + .-.....+++ .++|.++++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45678888765 23211 11110 0 1124677999 6777777776667889999
Q ss_pred EcCCCceEEeecccc-----ccCC--CCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1006 EASNLEVQCRILSTA-----YLRP--TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1006 d~~~~~~~~~~~~~~-----~~~~--~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+. +|.......... +... .....--.|..++++|.++.++++=...+.|+.+++.
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 564432221100 0000 0000112467899995456666666667788888763
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0031 Score=70.83 Aligned_cols=239 Identities=13% Similarity=0.072 Sum_probs=135.2
Q ss_pred CceEEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
....++++| ++..|.++-.. +.|+.+|..++.... +.........++|+++|++|+++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyva 196 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMIIT 196 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEEE
Confidence 568899998 34445554433 789999988765432 22244678899999999977666
Q ss_pred eCC----C-EEEEEEccCCCcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcC
Q 001363 415 YSK----H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP 487 (1092)
Q Consensus 415 ~~d----~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~ 487 (1092)
... . .+.+.+.. +.... ...+. .......++++| +|. ++++-..++.|..++..++........ ....
T Consensus 197 d~~~~~~~~~v~~~~~~-g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~ 271 (430)
T 3tc9_A 197 NDQNNNDRPNNYILTRE-SGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW 271 (430)
T ss_dssp ECCSCTTSEEEEEEEGG-GTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred eCCCCcccceEEEEeCC-Cceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence 542 2 34444443 33221 11222 123456789999 565 666666788999999887664322221 2234
Q ss_pred eEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc----eEEecCC---------------CCceE-EEEEc--------
Q 001363 488 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCT-RMAYS-------- 538 (1092)
Q Consensus 488 v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~-~~~~s-------- 538 (1092)
...+++++ ++. ++++-...+.|..++.+.... ...+... -.... .++..
T Consensus 272 P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D 349 (430)
T 3tc9_A 272 EFHIQFHP--SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS 349 (430)
T ss_dssp CEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred ceeEEEcC--CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence 66788855 566 455556778899988764311 1111110 00122 44443
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec---------c------ccCCceEEEEEcCC-CCEEEEEeCCCcE
Q 001363 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------Q------LQHNSVSVVHFDTA-KDQILAAGDDHVI 602 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------~------~~~~~v~~~~~~~~-~~~l~~~s~dg~i 602 (1092)
++|...++-. +.+.|+.++. +|... .+.+. . ..-.....++++|+ +..+++-..++.|
T Consensus 350 ~~g~lyvaD~----~n~~I~~i~~-~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rI 423 (430)
T 3tc9_A 350 DEYDFYFCDR----ENHCIRILTP-QGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRI 423 (430)
T ss_dssp CCEEEEEEEG----GGTEEEEECT-TSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEE
T ss_pred CCCeEEEEEC----CCcEEEEECC-CCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 2344444332 2566888884 45443 33322 0 00125788999985 4444444456677
Q ss_pred EEEECC
Q 001363 603 KIWDMN 608 (1092)
Q Consensus 603 ~iwd~~ 608 (1092)
+.++++
T Consensus 424 r~i~~e 429 (430)
T 3tc9_A 424 RKIGYE 429 (430)
T ss_dssp EEEEEC
T ss_pred EEEccC
Confidence 777653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0094 Score=66.14 Aligned_cols=250 Identities=8% Similarity=-0.061 Sum_probs=150.3
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-C
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-S 416 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~ 416 (1092)
+|.+..+.. +++.+. ...|+..++.+..... +...-..+..++|++.+..|..+. .
T Consensus 76 ~C~~~~~~~-~ll~~~--~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~ 132 (400)
T 3p5b_L 76 ACKAVGSIA-YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLS 132 (400)
T ss_dssp SCCCSTTSC-EEEEEE--TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETT
T ss_pred ceeeccccc-eeEEec--cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecC
Confidence 344443333 344443 3678888888765432 122446788999999776666654 5
Q ss_pred CCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001363 417 KHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
.+.|+.+++.+.... .....+.........+++.+.+.. ++++-...+.|.+.+++.......+.........+++.+
T Consensus 133 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 133 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 678999998763210 011122223445778999985554 556666678999999876654444443445567888865
Q ss_pred cCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001363 496 KENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 496 ~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
. ++.++++-.. .+.|...+++...........-.....+++++++..|+.+-. +...|..+|.............
T Consensus 212 ~-~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 212 V-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp T-TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECS
T ss_pred c-cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCC
Confidence 4 2334444323 477888888765554444444456789999998888887743 2567999998654433333321
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
. .......+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus 288 ~-~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 288 K-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp S-TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred C-CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 1 11345566663 23344455566788888877777666654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0021 Score=72.07 Aligned_cols=239 Identities=15% Similarity=0.088 Sum_probs=136.6
Q ss_pred CCceEEeecCC---CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 335 SSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 335 ~~V~~v~~spd---g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.....++|+|+ |. |+++-. .+.|+.+|..++.... +.+.......++|+++|+++
T Consensus 139 ~~P~gvavd~~s~~g~-Lyv~D~-~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~ly 196 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDD-LYWVGQ-RDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMV 196 (433)
T ss_dssp SCCCEEEECTTTTTCE-EEEECB-TSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEE
T ss_pred CCCceEEEccccCCCE-EEEEeC-CCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEE
Confidence 35779999995 55 444433 3889999988776543 22244568999999999944
Q ss_pred EEEeCC---C-EEEEEEccCCCcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeEEE-ec-C
Q 001363 412 GVAYSK---H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG-H 484 (1092)
Q Consensus 412 as~~~d---~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~-~ 484 (1092)
++.... . .+...+...+.... ..+. .-.....+++.| +|. ++++-..++.|+.+|..++.....+ .. .
T Consensus 197 Vad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 197 VVDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp EEECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred EEcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 443311 2 23444443322111 1121 223456789999 666 5666667788999998878763333 21 1
Q ss_pred CcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc----eEEecCC---------------CCceEEEEE-------
Q 001363 485 GAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCTRMAY------- 537 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~~~~~------- 537 (1092)
...-..+++++ ++. +.++-...+.|+.++++.... ...+... -.....+++
T Consensus 272 ~~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~ 349 (433)
T 4hw6_A 272 KGSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA 349 (433)
T ss_dssp CSSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred CCCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence 22234577754 556 555556678899988763211 1111110 113566888
Q ss_pred --ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc---------------cCCceEEEEEc-CCCCEEEEEeCC
Q 001363 538 --SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDD 599 (1092)
Q Consensus 538 --s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~-~~~~~l~~~s~d 599 (1092)
.++|...++-. +.+.|+.++. +|.. .++.+... .-.....+++. +++..+++-..+
T Consensus 350 ~dd~~g~lyvaD~----~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n 423 (433)
T 4hw6_A 350 GEEDEYDFYFCDR----DSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN 423 (433)
T ss_dssp TSSCCEEEEEEET----TTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccCCCCcEEEEEC----CCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence 66666555533 2667888885 5543 33333210 11346778888 455444444456
Q ss_pred CcEEEEECC
Q 001363 600 HVIKIWDMN 608 (1092)
Q Consensus 600 g~i~iwd~~ 608 (1092)
+.|+.++++
T Consensus 424 ~rIr~i~~e 432 (433)
T 4hw6_A 424 HRVRKIAPE 432 (433)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEecC
Confidence 677776653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.95 E-value=0.013 Score=62.60 Aligned_cols=239 Identities=9% Similarity=-0.019 Sum_probs=145.7
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecCCcCe
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV 488 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v 488 (1092)
+|+.+ ....|+..++.+...... ..+ .......+++|.+.+.. ++++-...+.|..+++..+... ..+...-...
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~-~~~-~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENAT-IVV-GGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCE-EEE-EEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred EEEEE-ccCeEEEEECCCCceEEE-EEe-cCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 34443 345689999987531111 112 22335678999986654 5556667788999998776422 2222222345
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
..+++.+. ++.+.++-...+.|.+++++.................+++.|.+..|+..... ....|+..++.....
T Consensus 82 ~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~~- 157 (318)
T 3sov_A 82 DGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSR- 157 (318)
T ss_dssp CEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCSC-
T ss_pred cEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCCe-
Confidence 56776533 44566666677899999987655444444444567899999977776665421 245688888764332
Q ss_pred EEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
..+.... -.....+++++++..|+.+. ..+.|..+|+........... .......+++.. +.++.+-...+.|.
T Consensus 158 ~~~~~~~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~ 232 (318)
T 3sov_A 158 FIIINSE--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSIL 232 (318)
T ss_dssp EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred EEEEECC--CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEE
Confidence 2222111 24678999999877776654 567899999875443333321 123346677753 45555656678899
Q ss_pred EEECCCCceeeecc
Q 001363 648 ILETPESNSVDAAG 661 (1092)
Q Consensus 648 iw~~~~~~~~~~~~ 661 (1092)
.++..+++....+.
T Consensus 233 ~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 233 ACNKYTGEGLREIH 246 (318)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEECCCCCceEEEe
Confidence 89887775544443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.88 E-value=0.014 Score=62.40 Aligned_cols=233 Identities=12% Similarity=0.010 Sum_probs=141.5
Q ss_pred CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEccCCCcccce
Q 001363 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ 434 (1092)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~ 434 (1092)
...|+..++.+........ + .....+..++|.+.+..|..+ ...+.|..++..++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-----------------V-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-----------------E-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEEE-----------------e-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 3679999988764211100 1 112356789999966555554 4567899999887642221
Q ss_pred EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe--cCCeEE
Q 001363 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIK 512 (1092)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~--~dg~i~ 512 (1092)
.+...-.....+++.+.+.. ++++-...+.|.+++++.......+.........+++.+.. ..|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEE
Confidence 12222235668999876554 55566667899999976544333333344556788886532 3444444 357788
Q ss_pred EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE
Q 001363 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1092)
Q Consensus 513 vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 592 (1092)
..+++...........-.....+++++++..|+.+-. ..+.|..+|...........+.. .....+++.. +..
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~l 221 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DIL 221 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEE
Confidence 8887754444333333445689999998888877643 35679999986543322222222 4566777753 334
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 593 ILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
+.+-...+.|..++..+|+....+..
T Consensus 222 ywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEEecCCCeEEEEECCCCCceEEEeC
Confidence 44555678888899887776666543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.013 Score=70.50 Aligned_cols=238 Identities=10% Similarity=-0.025 Sum_probs=146.0
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCC
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~ 485 (1092)
+|+.+. ...|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred cccccc-ccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 444443 344788888765422 22234456789999986654 5556666788999998753 2223333234
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.....|++.+. .+.+.++-...+.|.+.+++.......+.........|++.|.+.+|+..-.. ....|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 45567777543 23566676778899999988665544444444567899999987777665421 1256888888655
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
.....+... ......|++.+.+..|+.+. ..+.|...++........+...........+++.. +.++++-...+
T Consensus 548 ~~~~lv~~~---l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~ 623 (791)
T 3m0c_C 548 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE 623 (791)
T ss_dssp CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred ceEEEEeCC---CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence 443333322 25788999998877777765 55679999987665555554333223334566532 34444444567
Q ss_pred eEEEEECCCCceeeec
Q 001363 645 RIKILETPESNSVDAA 660 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~ 660 (1092)
.|...+..++..+..+
T Consensus 624 ~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 624 AIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred EEEEEeCCCCcceEEe
Confidence 8888887766554444
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0074 Score=63.62 Aligned_cols=197 Identities=12% Similarity=0.157 Sum_probs=125.7
Q ss_pred CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC---CCC---EEEEEeC---CCcEEEEEcC--CceeeEe
Q 001363 814 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGMD---DSTILIYNAR--SSEVISK 881 (1092)
Q Consensus 814 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~lasg~~---dg~v~iwd~~--~~~~~~~ 881 (1092)
..+++... .+.+.+||+ +|+.++.+.. +.+..+.+-|. +++ ++++... +++|.+|++. +++ +..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 34444333 578999999 8998888853 56677766651 111 2333333 5799999773 333 444
Q ss_pred ecc------cc-CCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeecCCCCcCCCCCceEEEEccC
Q 001363 882 LEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 882 l~~------h~-~~V~~l~~--spd-g~-~l~s~s~Dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
+.. .. ..+..+++ +|. ++ +++....+|.+..|++.. +.. ..+.++.+.-. +.+..++..+.
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEETT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEcCC
Confidence 421 11 56777888 775 44 577788899999999843 222 22333333222 25789999998
Q ss_pred CCEEEEEeCC-cEEEEEcC-----CceeeeeeccCC-CCCEEEEEE--ecCCC-EEEEEE-CCCcEEEEEcC-CCceEEe
Q 001363 948 QTRFLLVHET-HLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCR 1015 (1092)
Q Consensus 948 g~~la~~~d~-~i~lwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~t~~-~Dg~i~vwd~~-~~~~~~~ 1015 (1092)
...|.++.+. .|..|+.+ +++.+..+-.++ ...+..|++ .++|+ ||++++ .+.+..|||.. +.+.+.+
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 8888887554 46566644 344554432333 347888887 56666 677666 56799999997 7888888
Q ss_pred eccc
Q 001363 1016 ILST 1019 (1092)
Q Consensus 1016 ~~~~ 1019 (1092)
|...
T Consensus 271 f~Ig 274 (355)
T 3amr_A 271 FRIT 274 (355)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8633
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0065 Score=68.10 Aligned_cols=249 Identities=11% Similarity=0.114 Sum_probs=141.7
Q ss_pred cEEEEEECC-CCCEEEEEe-CCCEEEEEEccCCCcccceEEEc-ccccceeEEEE-------ecCCCcEEEEEEeCCC--
Q 001363 398 SVNRVVWSP-DGSLLGVAY-SKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK-- 465 (1092)
Q Consensus 398 ~V~~l~~sp-dg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~-------s~d~~~l~l~s~~~d~-- 465 (1092)
....|+|+| ++..|.++. ..+.|++.|.+++.... +.... ........++| +++|++ |+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 455555554 44678888888764322 11110 12235889999 999984 44443332
Q ss_pred -----cEEEEECCC-Ccee-----EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-------CCCc------
Q 001363 466 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------ 521 (1092)
Q Consensus 466 -----~i~vwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-------~~~~------ 521 (1092)
.|.+.+... |... ..+.... ....+++++. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266666443 2221 2222212 2345566443 45667777788899999987 4432
Q ss_pred -----e-EEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC--CCCeEE--EEEeecc------------ccC
Q 001363 522 -----R-VDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAIK--RTYQGLQ------------LQH 578 (1092)
Q Consensus 522 -----~-~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~~--~~~~~~~------------~~~ 578 (1092)
. ..+ .........++|+|+|+.|+.+-. ....|+.++. .++... ..+.+.. ..-
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 112 222345678999999997666532 3567888554 344321 2333320 001
Q ss_pred CceE-EEEEc-------CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC----------------------CCCCCceE
Q 001363 579 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI 628 (1092)
Q Consensus 579 ~~v~-~~~~~-------~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v 628 (1092)
.... .++.. +++..+++-..+..|+.++ .+|. +.++...+ .......+
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 2234 45554 4556666666788899998 4554 44443221 01224578
Q ss_pred EEccC-CCEEEEEeCCCeEEEEECCCCce
Q 001363 629 CFNKN-GTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 629 ~~s~~-~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
+++++ |.++++=+.++.|+.+++.....
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 88886 76666666678888888876543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.024 Score=68.22 Aligned_cols=251 Identities=9% Similarity=-0.039 Sum_probs=148.6
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~- 414 (1092)
.-+|.+..+.. +++.+ ....|+..++....... +......+..++|.+.+..|+.+
T Consensus 386 ~~~C~~~~~~p-~Ll~a--n~~~Ir~i~l~~~~~~~--------------------l~~~~~~~~gl~~d~~~~~lY~sD 442 (791)
T 3m0c_C 386 TKACKAVGSIA-YLFFT--NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSD 442 (791)
T ss_dssp CCCCEETTSCC-EEEEE--CBSSEEEECTTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEE
T ss_pred Cceeeeccccc-ccccc--cccceeEeeccCCccee--------------------eecCCCceEEEeecccCCeeEEee
Confidence 33455544433 23333 23567777777654332 22234567899999966665554
Q ss_pred eCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001363 415 YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++........+.........|++
T Consensus 443 ~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaV 521 (791)
T 3m0c_C 443 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 521 (791)
T ss_dssp TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEE
T ss_pred ccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEE
Confidence 45678998988753210 111123323455778999988865 5566667889999998755443334444455788888
Q ss_pred cccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001363 494 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
.+.. +.++++-... +.|.+.+++...........-.....|++.+.+..|+.+-. +...|...++........+.
T Consensus 522 Dp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~---~~~~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 522 DPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILE 597 (791)
T ss_dssp ETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEE
T ss_pred ecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---CCCcEEEEecCCCceEEEec
Confidence 6542 3344443333 67888888765554444444457889999988888877643 25679999986554444443
Q ss_pred eccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEe
Q 001363 573 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
... ......++++. +.+|+.+ ...+.|...|..+|+.+..+.
T Consensus 598 ~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 598 DEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp CTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 321 11234556653 3355544 456778888877776665554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.017 Score=64.69 Aligned_cols=253 Identities=13% Similarity=0.111 Sum_probs=142.8
Q ss_pred CceEEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE-------CCC
Q 001363 336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-------SPD 407 (1092)
Q Consensus 336 ~V~~v~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-------spd 407 (1092)
....|+|+| ++..|+++....+.|++.|..++........ -...-.....++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~----------------~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI----------------NTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC----------------TTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc----------------CccccCCCcEEEEeecccccCCC
Confidence 467899999 3555666665557788899887765532100 0112246899999 999
Q ss_pred CCEEEEEeCCC-------EEEEEEccC-CCccc-c-eEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC----
Q 001363 408 GSLLGVAYSKH-------IVQLYAYHG-GSDAR-Q-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---- 473 (1092)
Q Consensus 408 g~~las~~~d~-------~i~iwd~~~-~~~~~-~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---- 473 (1092)
|++|+++...+ .|.+.+... |.... . ...+... .....++++|++.. ++++-..++.|..+|++
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99777765543 366666444 22211 0 0122211 23457889996554 56667778889999987
Q ss_pred ---CCce-----------eEE-Ee-cCCcCeEEEeecccCCccE-EEEEecCCeEEEEEcCCCCce----EEecCC---C
Q 001363 474 ---TGSR-----------TYS-FE-GHGAPVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGAR----VDYDAP---G 529 (1092)
Q Consensus 474 ---~~~~-----------~~~-~~-~~~~~v~~i~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~----~~~~~~---~ 529 (1092)
++.. ... +. +.......++|++ ++.+ .++-+....|+.++.+..... ..+.+. .
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 5553 122 21 1234457888855 5564 555566788988776543211 111110 0
Q ss_pred ------------CceE-EEEEc-------cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-------------
Q 001363 530 ------------LGCT-RMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL------------- 576 (1092)
Q Consensus 530 ------------~~i~-~~~~s-------~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~------------- 576 (1092)
.... .++.. ++|...++-.. +..|+.++ .+|. +.++.+...
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~----N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL----NFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG----GTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC----CCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence 1123 44554 44554444332 66799998 4553 445544310
Q ss_pred --------cCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEE
Q 001363 577 --------QHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 577 --------~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1092)
.-.....+++.++ +..+++=..+..|+.++++......
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 0134667888886 5544555566778888776654443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.01 Score=62.63 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=120.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccC--Ccc---EEEEEe-c--CCeEEEEEcCCCC-ceEEecC
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE--NIH---FIFSIS-V--DGKIKAWLYDSLG-ARVDYDA 527 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~---~l~s~~-~--dg~i~vwd~~~~~-~~~~~~~ 527 (1092)
+++....++-+.+||+ +|+.++.+.. +.++.+.+.+.- +++ ++++.. . +++|++|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666667788999998 9999988864 456666554310 111 223333 3 5789999875322 2333321
Q ss_pred ------CC-CceEEEEE--ccC-CC-EEEEEecCCCCceeEEEEeC-------CCCeEEEEEeeccccCCceEEEEEcCC
Q 001363 528 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 528 ------~~-~~i~~~~~--s~d-g~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
.. ..+..+|+ +|. ++ ++++... ++.+..|++ .+.+.++++... ..+..|...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45666777 674 44 3444433 456777777 234566666653 47889999999
Q ss_pred CCEEEEEeCCCcEEEEECC-----CCceEEEEeCCCCCCCCceEEE--ccCCC-EEEEEe-CCCeEEEEECC-CCceeee
Q 001363 590 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA 659 (1092)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iw~~~-~~~~~~~ 659 (1092)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .+.++.+|+.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9999999998777777755 3445555433222235677777 45555 566665 57899999996 4444444
Q ss_pred c
Q 001363 660 A 660 (1092)
Q Consensus 660 ~ 660 (1092)
+
T Consensus 271 f 271 (355)
T 3amr_A 271 F 271 (355)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0073 Score=63.07 Aligned_cols=202 Identities=12% Similarity=0.093 Sum_probs=124.3
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEE-ecC----CC--CCeEEEEE---cCCCCCEEEEEeC-------
Q 001363 804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGMD------- 864 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~lasg~~------- 864 (1092)
-..++.|.+....+..++ .++|..||...+..... +.. .. ..+..+.+ .| +++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 345788988666666665 79999999986544333 222 11 13578999 68 6777776442
Q ss_pred ------CCcEEEEEcC---CceeeEeec--ccc-----------CCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCcee
Q 001363 865 ------DSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGIQ 921 (1092)
Q Consensus 865 ------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~spdg~~l~s~s~D-g~I~iwd~~~~~~~ 921 (1092)
+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+.....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 6789999999 787654433 211 247889999999999998887 77666665543221
Q ss_pred eeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCcee--eeeeccCC---CCCEEEE-EEecCCCE-E
Q 001363 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM-V 993 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~--~~~~~~~h---~~~v~~l-~fs~dg~~-l 993 (1092)
. ..+....... ......+++.|||..|++. ..+.+..+|+.+... +..-..+. -.....+ .--.+|+. |
T Consensus 173 ~-~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 173 T-FAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp E-EEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred e-eeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence 1 1122211111 1246799999999988883 478899999884333 21110021 1233443 33357877 5
Q ss_pred EEEECCCcEEEEEcCC
Q 001363 994 FTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 994 ~t~~~Dg~i~vwd~~~ 1009 (1092)
++.+..+.+.+.+-+.
T Consensus 250 V~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 250 VGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEETTEEEEEECSST
T ss_pred EEcCCCCEEEEECCCC
Confidence 5555566555555444
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.02 Score=62.08 Aligned_cols=229 Identities=12% Similarity=0.072 Sum_probs=124.8
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCce-eeEEec---CCCCCeEEEEEcCC---CCCEEEEEeC---C----CcE
Q 001363 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI 868 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~lasg~~---d----g~v 868 (1092)
.....++|.|||+++++-.+|.|++++ .+++ .+..+. ........++++|+ ++.+.++-+. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 346789999999977776689999987 3454 222221 12356889999993 2444443332 3 567
Q ss_pred EEEEcCCc-------eee-Eeecc-ccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCcee-----
Q 001363 869 LIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ----- 921 (1092)
Q Consensus 869 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~spdg~~l~s~s~D-------------g~I~iwd~~~~~~~----- 921 (1092)
..|+.... +.+ ..+.. .......|+|.|||.++++.+.. |.|.-.+.+. +..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCC
Confidence 77877654 111 21221 11123579999999988875532 3344444332 100
Q ss_pred -eeeeeecCCCCcCCCCCceEEEEcc-CCCEEEE--EeCC--cEEEEEcCCce------------------eeeeeccCC
Q 001363 922 -TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL--VHET--HLAIYEAEELT------------------CLKQWFPIS 977 (1092)
Q Consensus 922 -~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~--~~d~--~i~lwd~~~~~------------------~~~~~~~~h 977 (1092)
...... .++. ....++|+| +|++.++ +.+. .|.+.. .+. .+..+.. .
T Consensus 187 ~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~-~ 257 (354)
T 3a9g_A 187 PNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS-E 257 (354)
T ss_dssp TTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT-C
T ss_pred CCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC-C
Confidence 000111 1111 356899999 6777776 2222 244332 221 1111101 1
Q ss_pred CCCEEEEEEe-------cCCCEEEEEECCCcEEEEEcCCC-ceEEeeccccccCCCCccccccceEEEECCCCCCEEEEE
Q 001363 978 SVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus 978 ~~~v~~l~fs-------~dg~~l~t~~~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1049 (1092)
......++|. .+|.++++.-..+.|...++... ....... .... ..-++..+++.| |+.++++.
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~lyv~~ 329 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGILIST 329 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEEEEE
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEEEEE
Confidence 3467888883 67877777666778888888753 3321111 1111 112456788998 56666655
Q ss_pred e
Q 001363 1050 L 1050 (1092)
Q Consensus 1050 ~ 1050 (1092)
.
T Consensus 330 ~ 330 (354)
T 3a9g_A 330 S 330 (354)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00042 Score=83.05 Aligned_cols=234 Identities=9% Similarity=-0.016 Sum_probs=135.0
Q ss_pred CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC----CceeEEEecCCcCeEEEe
Q 001363 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~i~ 492 (1092)
.+.|+..++.+.+... +......+..++|.+.+.. ++++-...+.|+.+++.+ ......+.........++
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 3467778877654322 1122335678999987763 444445567899999875 222222211112334566
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001363 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
+.+. ++.++++-...+.|.+++++.......+.........+++.|++.+|+..... ..+.|+.+++..... ..+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~~-~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDI-YSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCCC-CEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCCe-eEEE
Confidence 6433 34555665667889999887654444433333455778999977766654321 125687777653322 2222
Q ss_pred eccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 573 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
... ......++++|++..|+.+ +..+.|.++++........+...........+++..+ .++++....+.|..++.
T Consensus 536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 111 2456789999987666655 4667899999875444333332222223456666554 45555566789999998
Q ss_pred CCCceeeeccc
Q 001363 652 PESNSVDAAGV 662 (1092)
Q Consensus 652 ~~~~~~~~~~~ 662 (1092)
.+++.+..+..
T Consensus 613 ~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 LTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECCCT
T ss_pred cCCCceEEeec
Confidence 87776666543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.016 Score=62.90 Aligned_cols=228 Identities=11% Similarity=0.075 Sum_probs=120.3
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--eEEec---CCCCCeEEEEEcCCC---CCEEEEEeC-C-----CcEE
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPHD---NNVIAIGMD-D-----STIL 869 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~d---~~~lasg~~-d-----g~v~ 869 (1092)
....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+| + +..|.++.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 46789999999977776679999998 3432 22221 1235678999999 6 334444333 2 6788
Q ss_pred EEEcCCce-----e-eEeec---cccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCcee------
Q 001363 870 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 921 (1092)
Q Consensus 870 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~spdg~~l~s~s~D-------------g~I~iwd~~~~~~~------ 921 (1092)
.|+...+. . +..+. +.......++|.|||.+.++.+.. |.|.-++.+. ...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88877531 1 22233 111123579999999887775432 3444444432 100
Q ss_pred -----eeeeeecCCCCcCCCCCceEEEEcc-CCCEEEE-EeCCcE------EEEEcCCce------------------ee
Q 001363 922 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL-VHETHL------AIYEAEELT------------------CL 970 (1092)
Q Consensus 922 -----~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~-~~d~~i------~lwd~~~~~------------------~~ 970 (1092)
...... .++. ....++|+| +|.+.++ ...+.+ .|.-+..+. .+
T Consensus 188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000100 0111 256789999 6777776 222221 233333222 11
Q ss_pred eeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEee-ccccccCCCCccccccceEEEECCCCCCEEEEE
Q 001363 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1049 (1092)
..+ .+......++| .+|.++++....+.|...++......... ....++.. .-++..+++.| |+.++++.
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence 111 22345677888 57777666656677777777654311000 00011111 12456788888 46655554
Q ss_pred e
Q 001363 1050 L 1050 (1092)
Q Consensus 1050 ~ 1050 (1092)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00052 Score=82.27 Aligned_cols=205 Identities=9% Similarity=0.007 Sum_probs=123.6
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCC----ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
..+..++|++.+..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789998887777775 47899999875 22222222222345678888635666666566789999998865
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE
Q 001363 877 EVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-D-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 954 (1092)
.....+.........+++.|++.+|..+.. . +.|.+.++....... .+.. .. .....|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~~---~l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE---NI---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESCS---SC---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEeC---CC---CCccEEEEeccCCEEEEE
Confidence 433333333345678899997655544432 2 677777776532111 1111 11 135689999987766664
Q ss_pred --eCCcEEEEEcCCceeeeeeccC--CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001363 955 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 955 --~d~~i~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
..+.|..+++.... ...+... .......|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 45679999986432 2222221 1233445566444 445555566889999998888876664
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.17 Score=54.39 Aligned_cols=236 Identities=12% Similarity=0.093 Sum_probs=145.0
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
.-.+|..+ ++|.-. ..++.|+|+++.+.+..+.+ ..+|..=.|-.+. .|+-.+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~ta 126 (494)
T 1bpo_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA 126 (494)
T ss_dssp EEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SSE
T ss_pred eeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CCe
Confidence 44577776 565543 57899999999888875332 2467777776544 444443 446
Q ss_pred EEEEEccCCCcccceEEEcccc----cceeEEEEecCCCcEEEEEEe------CCCcEEEEECCCCceeEEEecCCcCeE
Q 001363 420 VQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
|+-|++++..... ..+..|. ..|..-..++|.+++ +++|= -.|.+.+|..+.+. -+.+.||.+...
T Consensus 127 VyHWsi~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFA 202 (494)
T ss_dssp EEEEESSSSCCCE--EEEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEE
T ss_pred eEEecccCCCCch--hheecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeeccccc-cchheeeeeeeE
Confidence 9999997644322 2344443 357777788999863 33332 34678899966554 567788887776
Q ss_pred EEeecccCCc-cEEEEEecC---CeEEEEEcCCC---C-----ceEEecCC----CCceEEEEEccCCCEEEEEecCCCC
Q 001363 490 SLCPHAKENI-HFIFSISVD---GKIKAWLYDSL---G-----ARVDYDAP----GLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 490 ~i~~~~~~~~-~~l~s~~~d---g~i~vwd~~~~---~-----~~~~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
.+.+...... .++..+... +.+++-++... . ....+..+ ..-..++..++.-..++..+.
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 6655332222 234444332 78999988654 1 11111111 122346777887777777664
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
.|.++++|+.++.++..-+-.. ..|...+......-+++....|.|.--.++..
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 7789999999999987766544 56655555555555666556665555444443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.24 Score=53.18 Aligned_cols=232 Identities=14% Similarity=0.129 Sum_probs=151.6
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceeeEeecc
Q 001363 806 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 884 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~ 884 (1092)
.+.-.+|..+.+|.-.+.++.|+|+++...+..+.-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..+++.+..
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheec
Confidence 3567889999998888899999999999888877643 3455555653 34666555 56799999975 356666665
Q ss_pred cc----CCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC-----
Q 001363 885 HS----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----- 948 (1092)
Q Consensus 885 h~----~~V~~l~~spdg~~l~s~s~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg----- 948 (1092)
|. ..|..-..++|.++++..|- .|.+.+|.++.+. -+..+||.. .-..+-.+|
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 213 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCCc
Confidence 53 46777888999999886542 4678899998743 445566543 112222233
Q ss_pred CEEEEEe----CCcEEEEEcCCc---e------eeeeeccC--CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceE
Q 001363 949 TRFLLVH----ETHLAIYEAEEL---T------CLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus 949 ~~la~~~----d~~i~lwd~~~~---~------~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~ 1013 (1092)
.+++.+. .++++|.++... . .+...++. -.+-..++..|+.-..+..-+.-|.|.+||+.+|.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 1233232 268999998532 1 11111211 2556667888888888888999999999999999998
Q ss_pred EeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 1014 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
.+-+. +...|.. -+.+. ...-++.....|.|.--.+.+.
T Consensus 294 ~~nrI--------s~~~iF~--t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 294 YMNRI--------SGETIFV--TAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEC--------CSSCEEE--EEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred eeecc--------cCCceEE--ecccC-CCCcEEEEccCceEEEEEEccc
Confidence 66651 2233442 23333 2345666668888877666543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.039 Score=59.84 Aligned_cols=237 Identities=10% Similarity=0.085 Sum_probs=125.6
Q ss_pred CeeEEEEecCCC-EEEEEeCCeEEEEEcCCceeeEE---e----cCCCCCeEEEEEcCC---CCCEEEEEeC-------C
Q 001363 804 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILT---I----MPPSPTATSLAFNPH---DNNVIAIGMD-------D 865 (1092)
Q Consensus 804 ~v~~~~~s~dg~-~l~~~sdg~i~iwd~~~~~~~~~---~----~~~~~~i~~l~~s~~---d~~~lasg~~-------d 865 (1092)
....++|.|||+ ++++-..|.|++++.. ++.... + .........++++|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 7766667999999854 332211 1 112345689999993 3444443222 2
Q ss_pred CcEEEEEcCCc-------eee-Eeec-----cccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCc
Q 001363 866 STILIYNARSS-------EVI-SKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG 919 (1092)
Q Consensus 866 g~v~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~spdg~~l~s~s~D-------------g~I~iwd~~~~~ 919 (1092)
..|..|++..+ +.+ ..+. .|. ...|+|.|||.++++.+.. |.|.-.+.+..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~- 174 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE- 174 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-
Confidence 35666666432 111 1121 132 3569999999777776542 34555555431
Q ss_pred ee-----------eeeeeecCCCCcCCCCCceEEEEcc-CCCEEEEE--eCCcEEEEEcCCceee---------------
Q 001363 920 IQ-----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTCL--------------- 970 (1092)
Q Consensus 920 ~~-----------~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~~--~d~~i~lwd~~~~~~~--------------- 970 (1092)
.. ...... .++. ....++|.| +|++.++- .++.=.|.-+..+...
T Consensus 175 ~p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~ 248 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK 248 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred CCCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence 00 000111 1111 367899999 67666662 2222222222111110
Q ss_pred --------------eeeccCCCCCEEEEEEec-------CCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccc
Q 001363 971 --------------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCL 1029 (1092)
Q Consensus 971 --------------~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1092)
..+.-.+...+..++|.. +|.++++.-..+.|...++..++....... +. ..
T Consensus 249 ~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~~----~~ 321 (353)
T 2g8s_A 249 IPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI---LT----DR 321 (353)
T ss_dssp CTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE---SG----GG
T ss_pred cCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc---cc----CC
Confidence 000001234677888863 577777766778888888876654433221 11 11
Q ss_pred cccceEEEECCCCCCEEEEEe-CCCcEEEEec
Q 001363 1030 HVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1060 (1092)
Q Consensus 1030 ~v~~~~~~~~p~d~~~l~~~~-~dg~v~~w~~ 1060 (1092)
.-++..+++.| |+.++++.. .+| +||.+
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 12567889999 567555443 344 45554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.16 Score=53.02 Aligned_cols=170 Identities=7% Similarity=0.021 Sum_probs=109.0
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE---CCCC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW---SPDG 408 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~---spdg 408 (1092)
...---.+++|.+....++++.-..++|..||...+..... .+. ++.. -......+..+.| .|+|
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~---------~g~~~~~~sGl~~~~~D~~g 77 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASS---------NGDGEQQMSGLSLLTHDNSK 77 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCC---------SSCCSEEEEEEEESSSSSCC
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Cccc---------cCCCcceeeEEEEeccCCCC
Confidence 33334567899886655667666789999999986654432 110 0000 0001124678999 6888
Q ss_pred CEEEEEe-------------CCCEEEEEEcc---CCCcccceEEEcccc-----------cceeEEEEecCCCcEEEEEE
Q 001363 409 SLLGVAY-------------SKHIVQLYAYH---GGSDARQQLEIDAHV-----------GNVNDLAFSAPCKQISVITC 461 (1092)
Q Consensus 409 ~~las~~-------------~d~~i~iwd~~---~~~~~~~~~~~~~h~-----------~~v~~~~~s~d~~~l~l~s~ 461 (1092)
+++++.. .+..|..+|+. +++.+... .+.... .....++..++|+ ..+++
T Consensus 78 rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~ 154 (334)
T 2p9w_A 78 RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAF 154 (334)
T ss_dssp EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEE
T ss_pred cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeC
Confidence 8888644 25779999999 77655422 333222 2488999999999 78888
Q ss_pred eCC-CcEEEEECCCCceeEEEecC------CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001363 462 GDD-KTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1092)
Q Consensus 462 ~~d-~~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 519 (1092)
+.- +.|...+.+.. .+..+... ....+.|+++| ++.+|++....|.+..+|+...
T Consensus 155 s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 155 ALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 877 88877775433 33333211 12255778854 6677777777999999998853
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.11 Score=56.39 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=63.1
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC---CCE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL 410 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~ 410 (1092)
-...+.++|.|||+ ++++ ..+|.|.+++ +++......++ +..........|+|+|| +.+
T Consensus 30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCCE
Confidence 34678999999998 5555 4558999998 44321110000 12223457889999998 566
Q ss_pred EEEEeC-C-----CEEEEEEccCCCcc--cceE-EEc---ccccceeEEEEecCCCcEEEEEE
Q 001363 411 LGVAYS-K-----HIVQLYAYHGGSDA--RQQL-EID---AHVGNVNDLAFSAPCKQISVITC 461 (1092)
Q Consensus 411 las~~~-d-----~~i~iwd~~~~~~~--~~~~-~~~---~h~~~v~~~~~s~d~~~l~l~s~ 461 (1092)
|.++.. . +.|..|+...+..- +.+. .+. +.......++|.|||. ++++.
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 655543 2 56888888754211 1111 122 1112346899999996 45543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.044 Score=58.73 Aligned_cols=207 Identities=10% Similarity=0.040 Sum_probs=114.4
Q ss_pred cEEEEEECCCCCEEEEEe------------CCCEEEEEEccCCCc-ccceEEEcc-----cccceeEEEEec--CCCcEE
Q 001363 398 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS 457 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~~~-~~~~~~~~~-----h~~~v~~~~~s~--d~~~l~ 457 (1092)
..-.++..|+|..+++++ .+|.|.++|..+... ...+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344566788886666652 688999999974321 2222 2333 233566777766 454323
Q ss_pred EEEEeC--CCcEEEEECCCCc-e---eEEEecC-CcCeEEEeecccCCccEEEEEec-----------------CCeEEE
Q 001363 458 VITCGD--DKTIKVWDAVTGS-R---TYSFEGH-GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKA 513 (1092)
Q Consensus 458 l~s~~~--d~~i~vwd~~~~~-~---~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~-----------------dg~i~v 513 (1092)
+++-.. +.+|.+|+++.+. . +.++.+. -...+.+.+.+ +|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333333 5678888766532 2 2333332 13456777743 5666666431 234444
Q ss_pred EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcC-C
Q 001363 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-A 589 (1092)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~ 589 (1092)
+| ..+.. .....-.....++|+||++.|+.+.. ....|+.|++.. ++. .+.+ .. .+....+++.+ +
T Consensus 208 ~d--~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 208 YS--PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPVT 277 (355)
T ss_dssp EC--TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTTT
T ss_pred EE--CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCCC
Confidence 44 33222 22222234678999999999888764 255788898753 333 2233 11 25678899999 5
Q ss_pred CCEEEEEeCC-CcEEEEECC--CCceEEEEe
Q 001363 590 KDQILAAGDD-HVIKIWDMN--KVQLLTTID 617 (1092)
Q Consensus 590 ~~~l~~~s~d-g~i~iwd~~--~~~~~~~~~ 617 (1092)
|+..+++..+ +.|..|+.. .+..+..+.
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8877766533 344445544 244444444
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00026 Score=56.53 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=32.8
Q ss_pred CCchhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001363 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1092)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~ 35 (1092)
|+....||.+||..||+|.||..||-+|+.||+|.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999974
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.28 Score=52.97 Aligned_cols=233 Identities=17% Similarity=0.134 Sum_probs=119.1
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC---CCE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL 410 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~ 410 (1092)
-...+.++|.|||+ ++++ ..+|.|.+++ .+|+ .....+. +..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence 34789999999997 5555 4459999887 3444 1110100 01223456889999998 555
Q ss_pred EEEEeC----C----CEEEEEEccCCC-ccc---ce-EEEc-ccccceeEEEEecCCCcEEEEEEeC-------------
Q 001363 411 LGVAYS----K----HIVQLYAYHGGS-DAR---QQ-LEID-AHVGNVNDLAFSAPCKQISVITCGD------------- 463 (1092)
Q Consensus 411 las~~~----d----~~i~iwd~~~~~-~~~---~~-~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~------------- 463 (1092)
|.++.. + ..|..|+...+. .+. .+ ..+. +.......++|.|||. ++++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 555433 2 567788876541 111 11 0121 1111346799999997 5555332
Q ss_pred CCcEEEEECCCC---------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCe---EEEEEcCCCC-----------
Q 001363 464 DKTIKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK---IKAWLYDSLG----------- 520 (1092)
Q Consensus 464 d~~i~vwd~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~---i~vwd~~~~~----------- 520 (1092)
.+.|.-.+.+.. ..+.. .++.. ...++|.+. ++.++++-..... |.+. ..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA 242 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence 245555554321 11221 23433 345677542 3444444322221 3222 1111
Q ss_pred -------ceEEecCCCCceEEEEEc-------cCCCEEEEEecCCCCceeEEEEeCCCC-eEE--EEEeeccccCCceEE
Q 001363 521 -------ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVSV 583 (1092)
Q Consensus 521 -------~~~~~~~~~~~i~~~~~s-------~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~~ 583 (1092)
....+.........++|. .+|+++++... .+.|...++... +.. ..+... ....+..
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~~ 316 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLRD 316 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEEE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCeeE
Confidence 112221223356778883 56765555432 445777776643 322 122111 1256888
Q ss_pred EEEcCCCCEEEEEe
Q 001363 584 VHFDTAKDQILAAG 597 (1092)
Q Consensus 584 ~~~~~~~~~l~~~s 597 (1092)
+++.|||...++..
T Consensus 317 v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 317 VVIDDDGGILISTS 330 (354)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCcEEEEEe
Confidence 99999986555543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.032 Score=59.19 Aligned_cols=234 Identities=13% Similarity=0.083 Sum_probs=123.7
Q ss_pred CCCEEEEEe-C------CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEEcCCce-
Q 001363 813 NDAYLFSAS-G------GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE- 877 (1092)
Q Consensus 813 dg~~l~~~s-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~- 877 (1092)
++.+++.|+ . ..+.+||..+.+-.. .+........++. . ++.+++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--L-HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--E-CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445555554 1 358899988765322 2221111222222 2 56788888765 368999988765
Q ss_pred ----eeEeeccccCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC
Q 001363 878 ----VISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 878 ----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
.+..+......-..+.+ ++++++.|+.++ .+.+||..+.+......+. ... ....+...++
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r------~~~~~~~~~~ 160 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ--TAR------EGAGLVVASG 160 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS--SCC------BSCEEEEETT
T ss_pred CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC--CCc------ccceEEEECC
Confidence 22222222222222222 677788777543 5888998886644432221 111 1112222367
Q ss_pred CEEEEE-eC-----CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeec
Q 001363 949 TRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 949 ~~la~~-~d-----~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~ 1017 (1092)
++++.| .+ ..+.+||..+.+-...-... .......+...+++.++.|+.+ ..+.+||+.+.+....-
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~- 238 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA-TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT- 238 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC-
T ss_pred EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC-cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC-
Confidence 766663 32 46899998876544321111 1111112223477788888764 46899999888654221
Q ss_pred cccccCCCCccccccceEEEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCCCC
Q 001363 1018 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1073 (1092)
Q Consensus 1018 ~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~~ 1073 (1092)
..+.. ....+++.. ++..++.|+.++ .|.+||+. ..+|...++.
T Consensus 239 ---~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~ 287 (301)
T 2vpj_A 239 ---SMTTP-----RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPI--IDSWEVVTSM 287 (301)
T ss_dssp ---CCSSC-----CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETT--TTEEEEEEEE
T ss_pred ---CCCCc-----ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCC--CCeEEEcCCC
Confidence 12221 111122222 357888887663 56777774 4568776543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.029 Score=60.29 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=82.2
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC----CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee----
Q 001363 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 878 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~---- 878 (1092)
......+|.-++.+.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 445667889999999999999998855555555443 23688999999 899999876 55799988874321
Q ss_pred --------eEeecc------ccCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCC
Q 001363 879 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 879 --------~~~l~~------h~~~V~~l~~spd---g~~l~s~s~Dg~I~iwd~~~ 917 (1092)
...+.- ...+|..+.|+|- +..|++-..|++|++||+..
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 112221 2567999999995 56899999999999999986
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.044 Score=58.24 Aligned_cols=233 Identities=10% Similarity=0.011 Sum_probs=124.4
Q ss_pred CEEEEEe---CCeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC----CcEEEEEcCCcee--eEeec
Q 001363 815 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV--ISKLE 883 (1092)
Q Consensus 815 ~~l~~~s---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~--~~~l~ 883 (1092)
.+++.|+ ...+.+||..+.+-.. .+........++.+ ++.+++.|+.+ ..+.+||..+.+- +..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3444454 2569999988765322 22222222233333 56788888765 5788999988642 22232
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-e-
Q 001363 884 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H- 955 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~- 955 (1092)
.....-..+.+ ++++++.|+.+ ..+.+||..+.+......+... . ....+..-++++++.+ .
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r------~~~~~~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ--R------CSHGMVEANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC--C------BSCEEEEETTEEEEECCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC--c------ceeEEEEECCEEEEECCCC
Confidence 21122222222 67788888765 4588999988664332221111 1 1112222366666663 2
Q ss_pred --------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeecccccc
Q 001363 956 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1022 (1092)
Q Consensus 956 --------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~ 1022 (1092)
-..+.+||..+.+-...-... .......+..-++++++.|+.+ ..+.+||+.+.+.... ...
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~ 234 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV----SPM 234 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC----CCC
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC----CCC
Confidence 345889999877543321111 1111112223377788877754 3588999988754422 122
Q ss_pred CCCCccccccceEEEECCCCCCEEEEEeCC-----CcEEEEecCCCCCccccCCCCC
Q 001363 1023 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus 1023 ~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-----g~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
+.. ....+++.. ++.+++.|+.+ ..+.+||+ ...+|...++..
T Consensus 235 p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~ 282 (306)
T 3ii7_A 235 PWK-----GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSKVR 282 (306)
T ss_dssp SCC-----BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEEEE
T ss_pred CCC-----ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCCcc
Confidence 221 111222222 36788888865 45777887 445688765443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.037 Score=58.67 Aligned_cols=236 Identities=11% Similarity=-0.002 Sum_probs=119.7
Q ss_pred CCCEEEEEe-CC-----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----CcEEEEECCCC
Q 001363 407 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 475 (1092)
Q Consensus 407 dg~~las~~-~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~ 475 (1092)
++..++.|+ .+ ..+.+||..+++-.. ...+... .....+...+++ +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~--r~~~~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRK--RRYVASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSC--CBSCEEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChh--hccccEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 358889988754211 1111111 111122223555 66667654 46899998887
Q ss_pred c---eeEE--EecCCcCeEEEeecccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001363 476 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 476 ~---~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+ -... +.........+.+ ++.+++.|+.++ .+.+||..+.+-...-..........+...+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3222 1111111112222 456777776543 577888776543322221211111122223677777
Q ss_pred EEecCCC-CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCC
Q 001363 546 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 546 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~ 619 (1092)
.++.++. ....+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 7665332 13458999998876544321111 1112222222 45566666643 46899999987765543322
Q ss_pred CCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECCCCce
Q 001363 620 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS 656 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~ 656 (1092)
.. .....+..-++++++.|+.+ ..+.+||..+.+.
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 21 12222233367777777765 4577888877643
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.089 Score=55.71 Aligned_cols=222 Identities=10% Similarity=0.052 Sum_probs=117.1
Q ss_pred CeEEEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEEcCCcee--eEeeccccCCeEEEE
Q 001363 823 GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEV--ISKLEGHSKRVTGLV 893 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~--~~~l~~h~~~V~~l~ 893 (1092)
..+..||..+.+-... +......-..+.+ ++.+++.|+.++ .+.+||..+.+- +..+......-..+.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence 4588899887653222 2211111222222 567888887553 688999887642 222222112222222
Q ss_pred EcCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-e-------CCcEE
Q 001363 894 FSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-------ETHLA 960 (1092)
Q Consensus 894 ~spdg~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-------d~~i~ 960 (1092)
+ ++++++.|+.++ .+.+||+.+.+......+.. ... -.+++ .-++++++.+ . -..+.
T Consensus 107 ~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~-----~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 107 L--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT--RRS-----SVGVG-VVGGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp E--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS--CCB-----SCEEE-EETTEEEEECCEETTTTEECCCEE
T ss_pred E--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC--ccc-----CceEE-EECCEEEEEeCCCCCCCccccEEE
Confidence 2 677888887654 47788888766433222111 111 11222 2366666663 2 23588
Q ss_pred EEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeeccccccCCCCccccccceE
Q 001363 961 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
+||..+.+-...-.......-.+ +...++++++.|+.+ ..+.+||+.+.+....- ..+.. ....+
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~~~~-----r~~~~ 246 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA----DMNMC-----RRNAG 246 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC----CCSSC-----CBSCE
T ss_pred EEeCCCCcEEECCCCcccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC----CCCCc-----cccCe
Confidence 99998765433211111111112 223377888888765 36889999887554221 12211 11112
Q ss_pred EEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCC
Q 001363 1036 IAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus 1036 ~~~~p~d~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~ 1071 (1092)
++.. ++..++.|+.++ .+.+||+. ..+|...+
T Consensus 247 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~ 283 (302)
T 2xn4_A 247 VCAV--NGLLYVVGGDDGSCNLASVEYYNPT--TDKWTVVS 283 (302)
T ss_dssp EEEE--TTEEEEECCBCSSSBCCCEEEEETT--TTEEEECS
T ss_pred EEEE--CCEEEEECCcCCCcccccEEEEcCC--CCeEEECC
Confidence 2222 367888888664 47888884 45698775
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.072 Score=56.53 Aligned_cols=235 Identities=8% Similarity=-0.026 Sum_probs=119.3
Q ss_pred CEEEEEeC--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC----CcEEEEECCCCceeEEEe
Q 001363 409 SLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 409 ~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~ 482 (1092)
.+++.|+. ...+.+||..+++-.. ...+......-.. ..-+++ +++.|+.+ ..+.+||+.+++-...-.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~--~~~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAAC--VFWDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEE--EEETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEE--EEECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555554 3468899988754211 1111111111112 223555 66777654 578899988876433221
Q ss_pred cCC--cCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC-
Q 001363 483 GHG--APVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG- 553 (1092)
Q Consensus 483 ~~~--~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~- 553 (1092)
... .....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.......+...+++.++.++.+...
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTT
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCC
Confidence 111 11112222 45677777765 357888887654333222221111112222466777776654332
Q ss_pred ----ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCCCCCCC
Q 001363 554 ----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPE 624 (1092)
Q Consensus 554 ----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1092)
...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-........
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred cccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 3558899998876543322111 1122222222 45566666543 4688999988765543222221111
Q ss_pred CceEEEccCCCEEEEEeCC-----CeEEEEECCCCcee
Q 001363 625 NPRICFNKNGTLLAVIANE-----NRIKILETPESNSV 657 (1092)
Q Consensus 625 v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~ 657 (1092)
...+.+ ++++++.|+.+ ..+.+||..+.+..
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 222222 67788888753 56888888876443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.088 Score=55.72 Aligned_cols=235 Identities=12% Similarity=0.037 Sum_probs=117.0
Q ss_pred CCEEEEEeCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----CcEEEEECCCCcee
Q 001363 408 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT 478 (1092)
Q Consensus 408 g~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~~~ 478 (1092)
+..++.|+.+ ..+..||+.+++- .....+......- +++ .-+++ +++.|+.+ ..+.+||..+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRA-GMV-YMAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSC-EEE-EETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccc-eEE-EECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555533 3478888877531 1111111111111 122 22555 66677654 35889998877543
Q ss_pred EEEe--cCCcCeEEEeecccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 479 YSFE--GHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 479 ~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
..-. ........+.+ ++.+++.|+.++ .+.+||+.+.+-...-..........+..-+++.++.++.+.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV 166 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence 2211 11111112222 456777777653 466777765543322111111111112223667777766543
Q ss_pred CC---ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCCCCCC
Q 001363 552 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 552 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 32 3458899998876544321111 1122222222 45666666643 4689999988766544322211
Q ss_pred CCceEEEccCCCEEEEEeCCC-----eEEEEECCCCce
Q 001363 624 ENPRICFNKNGTLLAVIANEN-----RIKILETPESNS 656 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~ 656 (1092)
.....+..-++++++.|+.++ .+.+||..+.+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 112222233677777777653 478888887643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.24 Score=53.55 Aligned_cols=236 Identities=8% Similarity=-0.017 Sum_probs=117.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC--cccceE-EEcccccceeEEEEecC---CCcEEEEEEeC-------
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQL-EIDAHVGNVNDLAFSAP---CKQISVITCGD------- 463 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~-~~~~h~~~v~~~~~s~d---~~~l~l~s~~~------- 463 (1092)
.....|+|.|||+.|.++...|.|++++..... .+.... ...........++|+|+ +.. +.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence 457889999999944455577899999854321 111000 01112345688999996 554 3333222
Q ss_pred CCcEEEEECCCC--c--eeEE-EecC------CcCeEEEeecccCCccEEEEEec-------------CCeEEEEEcCCC
Q 001363 464 DKTIKVWDAVTG--S--RTYS-FEGH------GAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL 519 (1092)
Q Consensus 464 d~~i~vwd~~~~--~--~~~~-~~~~------~~~v~~i~~~~~~~~~~l~s~~~-------------dg~i~vwd~~~~ 519 (1092)
...|..|+...+ . .... +... ...-..++|. +||.+.++.+. .|.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666533 1 1111 1111 1113457774 46655555433 245666665532
Q ss_pred C------------ceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEE--------eCCCC-------------
Q 001363 520 G------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEW--------NESEG------------- 565 (1092)
Q Consensus 520 ~------------~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iw--------d~~~~------------- 565 (1092)
- ....+.........++|.| +|+..+ +-...++...|.+. ....+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~-~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWL-NEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEE-EEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEE-EecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 0 1111111223567899999 555444 33221111122221 11000
Q ss_pred --------eEEEEEeeccccCCceEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCceEEEEeC-CCCCCCCceEE
Q 001363 566 --------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRIC 629 (1092)
Q Consensus 566 --------~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~ 629 (1092)
..+..+.. ......+.|.. ++.++++.-..+.|...++..++....... ......+..++
T Consensus 254 ~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp BSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred CCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 00001111 13456677753 456666665777788888776554433221 11123578899
Q ss_pred EccCCCEEEEE
Q 001363 630 FNKNGTLLAVI 640 (1092)
Q Consensus 630 ~s~~~~~l~~~ 640 (1092)
+.|||.++++.
T Consensus 330 ~~pdG~lyv~t 340 (353)
T 2g8s_A 330 TGPDGYLYVLT 340 (353)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCcEEEEE
Confidence 99999866654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.13 Score=54.79 Aligned_cols=229 Identities=10% Similarity=0.072 Sum_probs=120.7
Q ss_pred eCCeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeC-----C------CcEEEEEcCCcee--eEeecccc
Q 001363 821 SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEV--ISKLEGHS 886 (1092)
Q Consensus 821 sdg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~-----d------g~v~iwd~~~~~~--~~~l~~h~ 886 (1092)
++..+.+||..+.+-.. .+..+.......+... ++.+++.|+. . ..+.+||..+.+- +..+....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 34678999998776432 2222223333334444 6778888874 1 1378889887652 22222111
Q ss_pred CCeEEEEEcCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-e-C
Q 001363 887 KRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E 956 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~D--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-d 956 (1092)
..-..+.+ ++++++.|+.+ ..+.+||..+.+......+.. . .....+...++++++.| . +
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~------r~~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--V------VYGHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--C------CBSCEEEEETTEEEEECCBCT
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--c------ccceeEEEECCEEEEEeCCCC
Confidence 11122222 66777777743 358899998865433221111 1 11122333566666664 3 2
Q ss_pred -----CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCC-----cEEEEEcCCCceEEeeccccccCCCC
Q 001363 957 -----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTT 1026 (1092)
Q Consensus 957 -----~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1026 (1092)
+.+.+||..+.+-...-... .......+..-+++.++.|+.++ .+.+||+.+.+....- ..+..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~- 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE----AFPQE- 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC----CCSSC-
T ss_pred CCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC----CCCCc-
Confidence 46999999876543321111 11111122234778888888664 4888999887544221 12221
Q ss_pred ccccccceEEEECCCCCCEEEEEeCCC--------------cEEEEecCCCCCccccCCCCC
Q 001363 1027 SCLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus 1027 ~~~~v~~~~~~~~p~d~~~l~~~~~dg--------------~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
....+++.. ++.+++.|+.++ .+.+||+ ...+|...+|..
T Consensus 234 ----r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~ 287 (315)
T 4asc_A 234 ----RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGVLREI 287 (315)
T ss_dssp ----CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEEESCS
T ss_pred ----ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhhccCC
Confidence 111122222 357888888643 3566676 455698775544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.82 Score=48.65 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=58.5
Q ss_pred eeEEEEecCCCEEEEEe--CCeEEEEEcCCcee------------------eEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 001363 805 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGMD 864 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~lasg~~ 864 (1092)
...++|.|+|.+.++-. ++.-.|--+..+.. +..+..+......++|.. +.++.....
T Consensus 204 p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~ 281 (347)
T 3das_A 204 VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLR 281 (347)
T ss_dssp CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEEST
T ss_pred cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeecccc
Confidence 45789999887766553 22222322222211 122222223556788874 556666666
Q ss_pred CCcEEEEEcCCcee----eEeeccccCCeEEEEEcCCCCEEEEEe
Q 001363 865 DSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 865 dg~v~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~l~s~s 905 (1092)
.+.|....+..+.. ...+.+..+.+..|+..|||.++++.+
T Consensus 282 ~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 282 GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 66777777765432 233445557899999999998877654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.093 Score=55.75 Aligned_cols=236 Identities=11% Similarity=0.049 Sum_probs=122.9
Q ss_pred ecCCCEEEEEe-----CCeEEEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeC----C-----CcEEEEEcC
Q 001363 811 SKNDAYLFSAS-----GGVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR 874 (1092)
Q Consensus 811 s~dg~~l~~~s-----dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~----d-----g~v~iwd~~ 874 (1092)
.-++.+++.|+ -..+.+||..+.+-... +....... +++.. ++.+++.|+. + ..+.+||..
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 34566666665 14589999887653322 22111122 22222 5677777775 2 368899988
Q ss_pred Ccee--eEeeccccCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC
Q 001363 875 SSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 875 ~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
+.+- +..+......-..+.+ ++++++.|+.+ ..+.+||..+.+......+. .... .-..+. -+
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~----~~~~~~--~~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TRRI----GVGVAV--LN 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SCCB----SCEEEE--ET
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC--cccc----ceEEEE--EC
Confidence 7642 2222221122222333 67777777644 35888999886543322111 1111 112222 26
Q ss_pred CCEEEEE-eC-----CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEee
Q 001363 948 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 948 g~~la~~-~d-----~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~ 1016 (1092)
+++++.+ .+ +.+.+||..+.+-...-.......-.+++ .-++++++.|+.+ ..+.+||+.+.+....
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~- 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV- 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE-EECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-
Confidence 6666663 22 45899998876543221111111111122 2377788888765 4689999988754421
Q ss_pred ccccccCCCCccccccceEEEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCCCC
Q 001363 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1073 (1092)
Q Consensus 1017 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~~ 1073 (1092)
...+.. ....+++.. ++.+++.|+.++ .+.+||+. ..+|...++.
T Consensus 247 ---~~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~ 296 (308)
T 1zgk_A 247 ---APMKHR-----RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTRM 296 (308)
T ss_dssp ---CCCSSC-----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEEC
T ss_pred ---CCCCCC-----ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC--CCEEeecCCC
Confidence 112221 111222222 367888887653 56778874 4568776443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.73 Score=51.20 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=77.4
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEcCCcee-------------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 001363 804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 868 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 868 (1092)
..-.+.++|||+++++++ +.++.++|+..... ..... -.-.....+|.+ +|....+..-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 345688999999999997 68899999874211 11122 234567899999 78666667789999
Q ss_pred EEEEcCCc----------eeeEeeccccCCeEEEEE------cCCCCEEEEEe---CCCcE----------EEEEcCCCc
Q 001363 869 LIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQI----------FVWDVDGWG 919 (1092)
Q Consensus 869 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------spdg~~l~s~s---~Dg~I----------~iwd~~~~~ 919 (1092)
.-|++... ..+.++.-|-.+- .+.- .|||++|++.. .|+-+ .+.|+...+
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 99999764 4556666554432 2222 57999999874 45533 667776544
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.17 Score=53.94 Aligned_cols=232 Identities=9% Similarity=-0.029 Sum_probs=115.6
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-----C------CcEEEEECCCCceeE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY 479 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d------~~i~vwd~~~~~~~~ 479 (1092)
++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||..+++-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 34444 468999998865221 22222222233333445666 5666663 1 127788988876422
Q ss_pred EEecCCcCeE--EEeecccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001363 480 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 480 ~~~~~~~~v~--~i~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
+.....+-. +++. . ++.+++.|+.+ ..+.+||..+.+-...-..+.......+...+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 111111111 1111 1 44666666642 34788887765422221111222222223356666677664
Q ss_pred CC--CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEeCCCCC
Q 001363 550 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL 622 (1092)
Q Consensus 550 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~ 622 (1092)
.. .....+.+||+.+.+-...-.... ......++.+ ++..++.|+.++ .+.+||+.+.+....-.....
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 21 123458999998876543221111 1112222222 556667776544 588899988766554332222
Q ss_pred CCCceEEEccCCCEEEEEeCC--------------CeEEEEECCCCcee
Q 001363 623 PENPRICFNKNGTLLAVIANE--------------NRIKILETPESNSV 657 (1092)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~d--------------g~i~iw~~~~~~~~ 657 (1092)
.....+..-++++++.|+.+ ..+.+||..+.+..
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 11222223367777777753 24677888776443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.48 Score=50.67 Aligned_cols=175 Identities=11% Similarity=0.028 Sum_probs=97.7
Q ss_pred CCCcEEEEEcCC--ceee-Eeecc-----ccCCeEEEEEcC--CCC-EEEEE-eC--CCcEEEEEcCCCceeeeeeeecC
Q 001363 864 DDSTILIYNARS--SEVI-SKLEG-----HSKRVTGLVFSD--ALN-ILVSS-GG--DAQIFVWDVDGWGIQTCRSLQTP 929 (1092)
Q Consensus 864 ~dg~v~iwd~~~--~~~~-~~l~~-----h~~~V~~l~~sp--dg~-~l~s~-s~--Dg~I~iwd~~~~~~~~~~~~~~~ 929 (1092)
.+|.|.++|..+ ++.. -.+.+ .......+.+.+ ++. +|..+ .. +.+|.+|+++..... ...+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-EEEEecc
Confidence 689999999874 2211 12222 234667777765 454 34444 22 567888888764322 2234444
Q ss_pred CCCcCCCCCceEEEEccCCCEEEEEe----C------------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEE
Q 001363 930 DGVMTLAPSETHIQFHKDQTRFLLVH----E------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 993 (1092)
Q Consensus 930 ~~~~~~~~~v~~l~~s~dg~~la~~~----d------------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 993 (1092)
.+... .....+++.++|++.++.. | ..=.+|.+..++. .... ..-.....++|||||+.|
T Consensus 160 ~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~-~~~~-~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 160 RHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVA-EGFDFANGINISPDGKYV 235 (355)
T ss_dssp CCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC-EEEE-EEESSEEEEEECTTSSEE
T ss_pred ccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE-EEee-cCCcccCcceECCCCCEE
Confidence 44322 3678999999999888742 1 1233444433332 2222 223467889999999887
Q ss_pred EEEE-CCCcEEEEEcCC-CceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCC
Q 001363 994 FTSF-VDGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1052 (1092)
Q Consensus 994 ~t~~-~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d 1052 (1092)
+.+. ..+.|..|++.. |.+... ... ..+ -.+=-++.++++|++.+++..+
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~-~~~-~~~-------g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPL-RVL-SFD-------TLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEE-EEE-ECS-------SEEEEEEECTTTCCEEEEEESC
T ss_pred EEEeCCCCeEEEEEECCCCcEecC-EEE-eCC-------CCCceEEEeCCCCcEEEEecCC
Confidence 7665 567899999864 433211 111 111 1233466776236777766544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.034 Score=53.84 Aligned_cols=143 Identities=7% Similarity=-0.056 Sum_probs=80.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcee-----eEeeccc--cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee----e
Q 001363 855 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----C 923 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~-----~~~l~~h--~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~----~ 923 (1092)
...+|++..+| +|+.=...++.. ..+..++ =..++.++|+|+|.+.+. .+|.+.--+..+..... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34567777777 666554444431 1111222 236789999999987777 66654444433211111 0
Q ss_pred eeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeecc------CCCCCEEEEEEecCCCEEEEEE
Q 001363 924 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
..+-.. +-. ....+.|.|+|.+.++ .|+.|+-++-.+.....-+.. .--..+..|.|.|+|.+.++.
T Consensus 80 t~IG~~-Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 80 KKIGNG-GWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp EEEECS-CGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cEeccc-ccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 011000 100 1368999999999998 779888777643221110000 112467899999999877665
Q ss_pred CCCcEEEEEcC
Q 001363 998 VDGTLSIHEAS 1008 (1092)
Q Consensus 998 ~Dg~i~vwd~~ 1008 (1092)
|+.++-+...
T Consensus 153 -dg~lyr~~~P 162 (236)
T 1tl2_A 153 -GQQFYKALPP 162 (236)
T ss_dssp -TTEEEEECCC
T ss_pred -CCcEEecCCC
Confidence 7775544333
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.18 Score=53.49 Aligned_cols=238 Identities=6% Similarity=-0.053 Sum_probs=117.7
Q ss_pred CCCCCEEEEEeCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC----C-----CcEEEEE
Q 001363 405 SPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWD 471 (1092)
Q Consensus 405 spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d-----~~i~vwd 471 (1092)
.-++..++.|+.+ ..+.+||..+++-.. ...+......- +++ .-+++ +++.|+. + ..+.+||
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEE-EETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEE-EECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence 3456777777632 358899988754211 10111111111 122 22555 5666665 2 4688999
Q ss_pred CCCCceeEE--EecCCcCeEEEeecccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001363 472 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 472 ~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1092)
+.+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++.+
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 172 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY 172 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred CCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence 887753321 1111111112222 45667776644 347778876654322211111111111122266777
Q ss_pred EEEecCCCC-ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeC
Q 001363 545 FSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 545 ~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~ 618 (1092)
+.++.++.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-..
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 776654322 3458899998776543221111 1122223333 55566666644 5689999988765543322
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECCCCce
Q 001363 619 GGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS 656 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~ 656 (1092)
... .....+..-++++++.|+.+ ..+.+||..+.+.
T Consensus 250 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 250 KHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp SSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 211 11112222367777777643 4577888877643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.29 Score=60.86 Aligned_cols=232 Identities=13% Similarity=0.125 Sum_probs=140.0
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceeeEeeccc
Q 001363 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 885 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 885 (1092)
+.-.+|..+.+|.-.+.++.|+|+++...+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+++.+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 45578888888888888999999998877766653 33565556654 34555554 56799999974 3455555545
Q ss_pred ----cCCeEEEEEcCCCCEEEEEe-------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEE---ccCCCEE
Q 001363 886 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF---HKDQTRF 951 (1092)
Q Consensus 886 ----~~~V~~l~~spdg~~l~s~s-------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---s~dg~~l 951 (1092)
...|..-.-+++.+|++..| -.|.+.+|+++.+ .-+..+||.. ....+.+ .+...++
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------~sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------cchhhhHhHh---hhheeccCCCCCCceEE
Confidence 45677788889999988654 3478899998874 3344555543 1111111 1112233
Q ss_pred EEEe----CCcEEEEEcCCc---ee------eeeeccC--CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEee
Q 001363 952 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 952 a~~~----d~~i~lwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
+.+. .+.++|.++... .. +...++. -..-..++..|+.-..+...+.-|.|.++|+.+|..+.+-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 3232 267888888542 11 1111111 1444456777777677888888999999999999887544
Q ss_pred ccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001363 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1017 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
+. ++..|... +.+.. ..-++.....|.|.--.+.+
T Consensus 297 ri--------s~~~iF~~--~~~~~-~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 297 RI--------SGETIFVT--APHEA-TAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred cc--------cCCceEEe--ccCCC-CCceEEEcCCceEEEEEEcc
Confidence 41 12333322 22322 23344444777766555544
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.64 Score=49.35 Aligned_cols=227 Identities=10% Similarity=0.001 Sum_probs=110.9
Q ss_pred EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC----CC-------cEEEEECCCCceeEE--EecCC
Q 001363 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG 485 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d~-------~i~vwd~~~~~~~~~--~~~~~ 485 (1092)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37889988765322 12221112222333345566 6666762 11 177888887754321 11111
Q ss_pred cCeEEEeecccCCccEEEEEecC-------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--Ccee
Q 001363 486 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 556 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--~~~~ 556 (1092)
.....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.......+...+++.++.++.... ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11111222 45677777754 24677777655433222222211111222356777777664221 1345
Q ss_pred EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
+.+||+.+.+-...-.... ......++.+ ++..++.|+.+ ..+.+||+.+.+....-..+.. .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876543321111 1112222222 45666666633 3577899988765543222211 11222223
Q ss_pred cCCCEEEEEeCC--------------CeEEEEECCCCceee
Q 001363 632 KNGTLLAVIANE--------------NRIKILETPESNSVD 658 (1092)
Q Consensus 632 ~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~ 658 (1092)
-++++++.|+.+ ..+.+||..+.+...
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 357777777653 357788887765443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.47 Score=51.44 Aligned_cols=239 Identities=12% Similarity=0.069 Sum_probs=117.3
Q ss_pred cCCCEEEEEe--CCeEEEEEcCC----ceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeC-C---------CcEEEEEcC
Q 001363 812 KNDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNAR 874 (1092)
Q Consensus 812 ~dg~~l~~~s--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~-d---------g~v~iwd~~ 874 (1092)
-++++++.|+ ...+.+||..+ ++.+..+. .......++.+ ++++++.|+. + ..+.+||..
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 3677777775 36799999863 33333332 11122223333 5677777776 2 468999998
Q ss_pred Ccee--eEeec-cccCCeEEEEEcCCCCEEEEEeCC---------------------------------------CcEEE
Q 001363 875 SSEV--ISKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFV 912 (1092)
Q Consensus 875 ~~~~--~~~l~-~h~~~V~~l~~spdg~~l~s~s~D---------------------------------------g~I~i 912 (1092)
+.+- +..+. .....-.++. .++++++.|+.+ ..+.+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred CCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 7642 22222 1111122222 577888888865 46889
Q ss_pred EEcCCCceeeeeeeecCCCCcCCCCCc-eEEEEccCCCEEEEE-e------CCcEEEEEc--CCceeeeee-ccCCCCCE
Q 001363 913 WDVDGWGIQTCRSLQTPDGVMTLAPSE-THIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQW-FPISSVPI 981 (1092)
Q Consensus 913 wd~~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~s~dg~~la~~-~------d~~i~lwd~--~~~~~~~~~-~~~h~~~v 981 (1092)
||..+.+......+.... .- .+++. -++++++.+ . ...+..||+ .+.+-.... ........
T Consensus 173 yd~~~~~W~~~~~~p~~~-------~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPWYG-------TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp EETTTTEEEEEEECSSCC-------CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred EeCCCCcEEECCCCCCCC-------cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 999886644432211111 11 22222 356666653 2 235777876 443322211 11111111
Q ss_pred EEEEEecCCCEEEEEECC----------------------CcEEEEEcCCCceEEeeccccccCCCCccccccceEEEEC
Q 001363 982 SQATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1039 (1092)
Q Consensus 982 ~~l~fs~dg~~l~t~~~D----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1039 (1092)
...+...++++++.|+.+ ..+.+||+.+.+.... ..++.. .....++..
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~----r~~~~~~~~- 315 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQG----RAYGVSLPW- 315 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSC----CBSSEEEEE-
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCC----cccceeEEe-
Confidence 222334577788877742 2578899987755432 122222 111122333
Q ss_pred CCCCCEEEEEeCCC------cEEEEecCCCCCccccCCCCCcc
Q 001363 1040 PLKPTQFAVGLTNG------EVYVIEPNEPGDTWAVLPPDEIV 1076 (1092)
Q Consensus 1040 p~d~~~l~~~~~dg------~v~~w~~~~~~~~~~~~~~~~~~ 1076 (1092)
++.+++.|+.++ .|.++++ ...+|....|...+
T Consensus 316 --~~~i~v~GG~~~~~~~~~~v~~l~~--~~~~~~~~~~~~~~ 354 (357)
T 2uvk_A 316 --NNSLLIIGGETAGGKAVTDSVLITV--KDNKVTVQNLEHHH 354 (357)
T ss_dssp --TTEEEEEEEECGGGCEEEEEEEEEC---CCSCEEEC-----
T ss_pred --CCEEEEEeeeCCCCCEeeeEEEEEE--cCcEeEeeeccccc
Confidence 368889998664 2344455 55668877776643
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.35 Score=52.04 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=85.9
Q ss_pred CCeEEEEEcCCCCceEEecCC----CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe------------EEEEE
Q 001363 508 DGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------------IKRTY 571 (1092)
Q Consensus 508 dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~------------~~~~~ 571 (1092)
++.||..++.....-..+... -..+..+..+|+|++|+..+ +..|.+..+..+. ..+.+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-----SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-----CCeEEEEEecCccccCcccccccccceeEE
Confidence 356666666644333333332 23677899999999999986 4457777665221 11223
Q ss_pred eeccc---cCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc--eEEEEe-------CCCCCCCCceEEEccCCCE
Q 001363 572 QGLQL---QHNSVSVVHFDTA---KDQILAAGDDHVIKIWDMNKVQ--LLTTID-------AGGGLPENPRICFNKNGTL 636 (1092)
Q Consensus 572 ~~~~~---~~~~v~~~~~~~~---~~~l~~~s~dg~i~iwd~~~~~--~~~~~~-------~~~~~~~v~~v~~s~~~~~ 636 (1092)
.-... ...+|..+.|+|- +..|++-..|+.|++||+.... +. .+. .......|.+++|.+++-.
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence 22110 1367999999996 4689999999999999998622 22 232 1222245778899887776
Q ss_pred EEEEe--CCCeEEEE
Q 001363 637 LAVIA--NENRIKIL 649 (1092)
Q Consensus 637 l~~~~--~dg~i~iw 649 (1092)
|.+.+ ..|.|+-.
T Consensus 194 LYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 194 LYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEecCCCCCEEEE
Confidence 76655 66666543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.065 Score=56.79 Aligned_cols=198 Identities=9% Similarity=0.040 Sum_probs=109.9
Q ss_pred CEEEEEeCCCcEEEEEcCCceeeEeeccc-cCCeEEEEE--cC-CCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCC
Q 001363 857 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 931 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--sp-dg~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 931 (1092)
.++++++.||.|+-.|..+|+.+.++... ..++....- .+ ++..++.. +.||.|..++..+|.......+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888754 123222110 01 23333333 589999999988875332111111111
Q ss_pred CcCCCCCceEEEE------------ccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCC------EEEEEEe-----c
Q 001363 932 VMTLAPSETHIQF------------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----C 988 (1092)
Q Consensus 932 ~~~~~~~v~~l~~------------s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~ 988 (1092)
. .-+.. +.+|..++.+.++++.-.|+.+|+.+..+..+.... ..|.... .
T Consensus 91 ~-------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 91 T-------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp T-------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred c-------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 0 00111 245554555889999999999999998765442111 1111111 1
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCcc
Q 001363 989 DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus 989 dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
.+..|+.+..+..+.+.+ .+|+ ...+....+.+.... ..+.. ....+. |+.. ++++.||.|..+|.......|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccc-ccccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 245777788888888777 5564 433332223222200 00000 000111 3444 557889999988888777778
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.82 E-value=1.1 Score=47.54 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=115.6
Q ss_pred CeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeC----CC-------cEEEEEcCCceee--EeeccccCC
Q 001363 823 GVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD----DS-------TILIYNARSSEVI--SKLEGHSKR 888 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~----dg-------~v~iwd~~~~~~~--~~l~~h~~~ 888 (1092)
..+..||..+.+-.. .+..........+... ++.+++.|+. ++ .+.+||..+.+-. ..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 458899988776433 2222222233333444 6788888883 12 2778888776432 222211111
Q ss_pred eEEEEEcCCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-e-C---
Q 001363 889 VTGLVFSDALNILVSSGGD-------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E--- 956 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~D-------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-d--- 956 (1092)
-..+.+ ++++++.|+.+ ..+.+||..+.+......+ +.... -.++ ...++++++.| . +
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~-----~~~~-~~~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL--PIKVY-----GHNV-ISHNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC--SSCEE-----SCEE-EEETTEEEEECCEESSSC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC--CCccc-----ccEE-EEECCEEEEEcCCCCCCC
Confidence 222222 67788888764 2478888887654332211 11111 1122 22567766663 2 1
Q ss_pred --CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeeccccccCCCCccc
Q 001363 957 --THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCL 1029 (1092)
Q Consensus 957 --~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1092)
+.+.+||..+.+-...-.......-.++ ..-+++.++.|+.+ ..+.+||+.+.+.... ...|..
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~---- 243 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM----TEFPQE---- 243 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC----CCCSSC----
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceE-EEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC----CCCCCc----
Confidence 3599999987754332111111111122 22477888888754 3477889888764421 112222
Q ss_pred cccceEEEECCCCCCEEEEEeCC--------------CcEEEEecCCCCCccccCC
Q 001363 1030 HVYPHAIAAHPLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus 1030 ~v~~~~~~~~p~d~~~l~~~~~d--------------g~v~~w~~~~~~~~~~~~~ 1071 (1092)
....+++.. ++.+++.|+.+ ..+.+||+ ...+|....
T Consensus 244 -r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~ 294 (318)
T 2woz_A 244 -RSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAGML 294 (318)
T ss_dssp -CBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEEEE
T ss_pred -ccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehhhc
Confidence 111122222 35788888764 34677777 445688763
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.81 E-value=2.5 Score=44.96 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=71.0
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
....++...-...+.|+|.|||+ ++++-...|.|++++..+++......+. .+..........|+|
T Consensus 22 ~~~~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~-------------~v~~~g~~GllGia~ 87 (347)
T 3das_A 22 KVLRTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVP-------------GVSPSGEGGLLGIAL 87 (347)
T ss_dssp EEEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECT-------------TCCCBTTBSEEEEEE
T ss_pred ceeEEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccC-------------ceeecCCCCceeeEe
Confidence 34445555555889999999998 6777655799999987666542210000 012234567889999
Q ss_pred CCC---CCEEEEE-e--CCCEEEEEEccCCC----cc---cceE-EEc-ccccceeEEEEecCCCcEEEEEEe
Q 001363 405 SPD---GSLLGVA-Y--SKHIVQLYAYHGGS----DA---RQQL-EID-AHVGNVNDLAFSAPCKQISVITCG 462 (1092)
Q Consensus 405 spd---g~~las~-~--~d~~i~iwd~~~~~----~~---~~~~-~~~-~h~~~v~~~~~s~d~~~l~l~s~~ 462 (1092)
+|| +.+|.+. + .++.|.-|.+..+. .+ +.+. .+. +....-..|+|.|||. ++++.+
T Consensus 88 ~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 88 SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 996 4445443 2 34556667766521 11 1111 121 1112346799999997 555543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.091 Score=50.88 Aligned_cols=149 Identities=9% Similarity=0.027 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee------eEee--ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001363 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~------~~~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~ 916 (1092)
.++.++|+| ++.+.++ .+|.++-.+..++.. -..+ .+... -.++.|.|+|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 667999999 8887776 678777666654221 1111 01122 478999999999988 56888777653
Q ss_pred CCceeeee--eeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceee-----eeecc-CCCCCEEEEEEec
Q 001363 917 GWGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----KQWFP-ISSVPISQATFSC 988 (1092)
Q Consensus 917 ~~~~~~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~-----~~~~~-~h~~~v~~l~fs~ 988 (1092)
+....... ......+-.. .+..|.|.|+|.+-++. |+.++-....++... ...+. +....-..+.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 32211110 0000111111 47899999999999998 888654333322110 01111 2223344567888
Q ss_pred CCCEEEEEECCCcEEEEEc
Q 001363 989 DCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 989 dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
+|...++. +| ++|..
T Consensus 192 ~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 192 VGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp TSCEEEEE--TT--EEEEE
T ss_pred CCcEEEEe--CC--eEEec
Confidence 88776655 66 44443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.26 E-value=1.7 Score=48.47 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=63.1
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc--CCCCCceEEEEccC---CCEEEE--Ee---
Q 001363 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKD---QTRFLL--VH--- 955 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~d---g~~la~--~~--- 955 (1092)
-...+.|+|.|||+++++-...+.|++++..++.... ......... ........++|+|| +..|.+ +.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3457799999999988875444568888765544322 111111110 01135779999996 555554 22
Q ss_pred ---------CCcEEEEEcCCc-------eeeee-eccCCCCCEEEEEEecCCCEEEEEEC
Q 001363 956 ---------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 956 ---------d~~i~lwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
...|.-|+...+ +.+.. +..........|+|.|||.+.++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 134555555322 11211 11111235788999999998777654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.57 Score=58.38 Aligned_cols=237 Identities=12% Similarity=0.108 Sum_probs=134.3
Q ss_pred eecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEE
Q 001363 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1092)
Q Consensus 341 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i 420 (1092)
-.+|..+ ++|.-. ..++.|+|+++...+..+.+ ..+|..=.|-.+..+-+++ +..|
T Consensus 72 IMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~l~lVT--~~aV 127 (1630)
T 1xi4_A 72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNTVALVT--DNAV 127 (1630)
T ss_pred ccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCeeEEEc--CCeE
Confidence 3467766 566543 57899999999887765332 3467777887655443333 3459
Q ss_pred EEEEccCCCcccceEEEccc----ccceeEEEEecCCCcEEEEEEe------CCCcEEEEECCCCceeEEEecCCcCeEE
Q 001363 421 QLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 421 ~iwd~~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
.-|++.+...... .+..| ...|..-..+++.+++ +++|= -.|.+.+|..+.+. .+.+.||.+....
T Consensus 128 yHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 128 YHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ 203 (1630)
T ss_pred EEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhhe
Confidence 9999975432221 22233 3457777788899863 33332 45788999866543 4556677666555
Q ss_pred EeecccCCccEEEE-Eec---CCeEEEEEcCCC---CceE-----EecCC----CCceEEEEEccCCCEEEEEecCCCCc
Q 001363 491 LCPHAKENIHFIFS-ISV---DGKIKAWLYDSL---GARV-----DYDAP----GLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 491 i~~~~~~~~~~l~s-~~~---dg~i~vwd~~~~---~~~~-----~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
+.+...+....|++ +.. .+.+++-++... .... .+..+ ..-..++..++.-..+...+. .
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~ 279 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 279 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----C
Confidence 54432222222322 222 268899888653 1111 11111 112235666666666666553 6
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
|.+.++|+.||.++..-+-.. .+|...+......-+++....|.|.--.+.....
T Consensus 280 G~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred ceEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 789999999998876544333 4454444444444455555556555555444433
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.99 E-value=1.3 Score=47.85 Aligned_cols=142 Identities=6% Similarity=-0.052 Sum_probs=67.3
Q ss_pred CcEEEEEcCCce--eeEeeccccCCeEEEEEcCCCCEEEEEeCC------CcEEEEEc--CCCceeeeeeeecCCCCcCC
Q 001363 866 STILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDV--DGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 866 g~v~iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~l~s~s~D------g~I~iwd~--~~~~~~~~~~~~~~~~~~~~ 935 (1092)
..+.+||..+.+ .+..+......-.+++.. ++++++.|+.+ ..+.++|+ .+.+... +.......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~---~~~~~~~~-- 241 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK---LAPVSSPD-- 241 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEE---CCCSSTTT--
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEe---cCCCCCCc--
Confidence 478999998764 333332111110122222 66777777642 35777877 4433222 22211110
Q ss_pred CCCceEEEEccCCCEEEEE-eC----------------------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCE
Q 001363 936 APSETHIQFHKDQTRFLLV-HE----------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 992 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~-~d----------------------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~ 992 (1092)
......+...++++++.+ .+ ..+.+||..+.+-...-... ..+....+...++++
T Consensus 242 -~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i 319 (357)
T 2uvk_A 242 -GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS-QGRAYGVSLPWNNSL 319 (357)
T ss_dssp -CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS-SCCBSSEEEEETTEE
T ss_pred -ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC-CCcccceeEEeCCEE
Confidence 011223344566666663 21 24788998866533221111 111112234458888
Q ss_pred EEEEECCC------cEEEEEcCCCceEEe
Q 001363 993 VFTSFVDG------TLSIHEASNLEVQCR 1015 (1092)
Q Consensus 993 l~t~~~Dg------~i~vwd~~~~~~~~~ 1015 (1092)
++.||.++ .|.++++++++....
T Consensus 320 ~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 320 LIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred EEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 88898653 355668888877643
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.91 E-value=2.5 Score=47.25 Aligned_cols=163 Identities=12% Similarity=0.087 Sum_probs=90.5
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee--eEeecc------ccCCeEEEEEcCC----CCEEEEEeC-----
Q 001363 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG------HSKRVTGLVFSDA----LNILVSSGG----- 906 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~spd----g~~l~s~s~----- 906 (1092)
.....++|.| +++++++-...+.|++++..+++. +..+.. ..+....|+|+|| +.+.++-+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 888777544445788888765543 223321 2456779999995 444444432
Q ss_pred -------CCcEEEEEcCCC--ceeee-eeeecCCCCcCCCCCceEEEEccCCCEEEEEeCC-------------------
Q 001363 907 -------DAQIFVWDVDGW--GIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET------------------- 957 (1092)
Q Consensus 907 -------Dg~I~iwd~~~~--~~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~------------------- 957 (1092)
...|.-+++..+ ..... .++........ .....++|.|||.+.++..|+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~--H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~ 183 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD--HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPT 183 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS--CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC--CCCCeEeECCCCeEEEEECCCCCCCccccccccccccccc
Confidence 234555655432 11111 12221111111 146899999999988873221
Q ss_pred ------------cEEEEEcC-Cce-----------eeeeeccCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEEcCCC
Q 001363 958 ------------HLAIYEAE-ELT-----------CLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1010 (1092)
Q Consensus 958 ------------~i~lwd~~-~~~-----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~-~~Dg~i~vwd~~~~ 1010 (1092)
.=+|+.+. .+. ....+..+| .....++|.++|++.++- +.++.-.|.-+..|
T Consensus 184 ~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 184 QQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp HHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred cccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 11344332 232 123333444 456789999998866653 34555566666554
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.49 E-value=5.4 Score=41.56 Aligned_cols=182 Identities=10% Similarity=0.058 Sum_probs=101.2
Q ss_pred EEeecCCCceEEEEEcCC-------------CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 339 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 339 ~v~~spdg~~llasg~~d-------------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
+--++++|+++..+...+ ..|+..++..++... +... . +.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~--~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD--P--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS--C--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC--C--ccEEE
Confidence 345689998766665543 356777776665332 1111 1 23678
Q ss_pred CCCCEEEEEe--C--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001363 406 PDGSLLGVAY--S--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 406 pdg~~las~~--~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+++++|+... . ...|..-++.+.. .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 2 3345555655432 22 3333332 467889985 2334334678888888776544333
Q ss_pred ecCCcCeEEEeecccCCccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 482 EGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+ ... ..++| ++.+|+-....+ .|..-+++...... +.. ..+ ..++|++++|+.+.... ...|..
T Consensus 184 ~~---~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 22333 445666555432 45555665544332 222 222 34888999998764321 356777
Q ss_pred EeCCCCe
Q 001363 560 WNESEGA 566 (1092)
Q Consensus 560 wd~~~~~ 566 (1092)
-++....
T Consensus 251 ~~~DG~~ 257 (302)
T 3s25_A 251 VKNDGTG 257 (302)
T ss_dssp EETTSCC
T ss_pred EECCCCc
Confidence 7775443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.093 Score=55.61 Aligned_cols=194 Identities=10% Similarity=0.033 Sum_probs=104.4
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecC-CcCeEEEeeccc-CCccEEEEE-ecCCeEEEEEcCCCCceEEecCC----C
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAK-ENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 529 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~i~~~~~-~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~----~ 529 (1092)
+++.++.||.|.-.|.++|+.+.+++.. ..++....-... .++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5888999999999999999999988754 123322211111 133334343 68999999988776444332211 1
Q ss_pred CceEE---EEE-----ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc-----eEEEEEc-----CCCC
Q 001363 530 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD 591 (1092)
Q Consensus 530 ~~i~~---~~~-----s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~-----~~~~ 591 (1092)
.++.. ..+ +..+..+++++. ++.++..|..+|+.+..+...... .. ..+.... ..+.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKN-GYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBC-C--------------------CC
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCc-ccccccccccccccccccccCCC
Confidence 11110 000 014456667665 778999999999999888643210 10 0011110 1235
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEE-----eCCCCCCCC-ceEEEccCCCEEEEEeCCCeEEEEECCCCceee
Q 001363 592 QILAAGDDHVIKIWDMNKVQLLTTI-----DAGGGLPEN-PRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v-~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
.++.+..+..+.+.+ .+|+ ...+ ........+ ..-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777666 3443 2111 100000000 00001234555 557889999999988887654
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.033 Score=44.24 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhc
Q 001363 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLS 58 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~ 58 (1092)
++|+-+=|++||..+||.+++.+|.+|.+++.+ ...=....|+=+|..++.+-.
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK 65 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence 578999999999999999999999999998774 222346677777777766644
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.01 E-value=5.4 Score=44.46 Aligned_cols=195 Identities=11% Similarity=0.100 Sum_probs=116.5
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCceeeEEecC-CCCCeEEEEEc--CCCCCEEEEEeC-------CCcE-----------
Q 001363 812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFN--PHDNNVIAIGMD-------DSTI----------- 868 (1092)
Q Consensus 812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s--~~d~~~lasg~~-------dg~v----------- 868 (1092)
.||+||..-. ..+|...++...++-+.+.- ....+..++|- | +..+++.+++ ||..
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4789998887 47788899998887666553 34577888886 6 6667777654 2221
Q ss_pred -EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEEcCC-------Cceee---
Q 001363 869 -LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQT--- 922 (1092)
Q Consensus 869 -~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg---------------~I~iwd~~~-------~~~~~--- 922 (1092)
...|..+.+...++.- .+....+...++|++.++.+... -+.++++.. |+...
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1123333333333221 22333456678888888776532 255665431 11110
Q ss_pred --eeeeecCC----CC-----cCCCCCceEEEEccCCCEEEEE--eCCcEEEEEcCCcee-------------eeeeccC
Q 001363 923 --CRSLQTPD----GV-----MTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI 976 (1092)
Q Consensus 923 --~~~~~~~~----~~-----~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~-------------~~~~~~~ 976 (1092)
..++.... +. .+.......+.++|||++++++ -+.++.++|++.... .... .
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--E 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--B
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--c
Confidence 01111111 00 0111345679999999999995 467899999974221 1111 1
Q ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001363 977 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 977 h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
-.......+|.++|.-..|-.-|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 2567788999999954455558999999999764
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.04 E-value=12 Score=40.73 Aligned_cols=259 Identities=11% Similarity=0.054 Sum_probs=122.6
Q ss_pred CCCeeEEEEec--CCCEEEEEeCC----eEEEEEcCCceeeEEecC--------------CCCCeEEEEEcCCC-CCEEE
Q 001363 802 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIMP--------------PSPTATSLAFNPHD-NNVIA 860 (1092)
Q Consensus 802 ~~~v~~~~~s~--dg~~l~~~sdg----~i~iwd~~~~~~~~~~~~--------------~~~~i~~l~~s~~d-~~~la 860 (1092)
...|.++++.| ++.+++.+..| .|...+ ..++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35688999998 66666666554 333321 22222222111 11257789998743 44556
Q ss_pred EEeCCCcEEEEEcCCceeeEeec---c----------------ccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCce
Q 001363 861 IGMDDSTILIYNARSSEVISKLE---G----------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI 920 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~~~~l~---~----------------h~~~V~~l~~spd-g~~l~s~s~Dg~I~iwd~~~~~~ 920 (1092)
++...+.|...+ +.|+.-..+. . ....|.+|.+.|. ...|..+..++.|...+-....
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~t- 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTD- 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSS-
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCC-
Confidence 566566554442 2222211111 0 1235789999873 3444444444434433222211
Q ss_pred eeeeeeec-CCC-Cc-----CCCCCceEEEEccC-CCEEEEEeCCcEEEEEcCCceeeeeeccCC-C---CCEEEEEEec
Q 001363 921 QTCRSLQT-PDG-VM-----TLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC 988 (1092)
Q Consensus 921 ~~~~~~~~-~~~-~~-----~~~~~v~~l~~s~d-g~~la~~~d~~i~lwd~~~~~~~~~~~~~h-~---~~v~~l~fs~ 988 (1092)
...+.. ... .. .....+.++++.|+ ...|.++..+.|...+- .++....+...- . ..+..++++|
T Consensus 211 --W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 211 --WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp --CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred --ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 111111 000 00 00124788999986 35565655555555442 233322222111 1 3456788876
Q ss_pred -CCCEEEEEEC-----------CCcEEEEEcCC-CceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcE
Q 001363 989 -DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1055 (1092)
Q Consensus 989 -dg~~l~t~~~-----------Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v 1055 (1092)
+...|.+++. ++...+|...+ |+....+. .-++....-..+...+++++|.++..|.+++.++.|
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 3334444432 33345665554 44433332 112221000112223577888655667777766654
Q ss_pred EEEecCCCCCccccC
Q 001363 1056 YVIEPNEPGDTWAVL 1070 (1092)
Q Consensus 1056 ~~w~~~~~~~~~~~~ 1070 (1092)
|.-.+.+..|...
T Consensus 366 --~~S~D~G~tW~~~ 378 (394)
T 3b7f_A 366 --WASADEGEHWQCI 378 (394)
T ss_dssp --EEESSTTSBCEEE
T ss_pred --EEECCCCCCceEc
Confidence 5555667778754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=5.5 Score=47.39 Aligned_cols=196 Identities=10% Similarity=0.104 Sum_probs=106.6
Q ss_pred cCCCEEEEEeC-----CeEEEEEcCCceeeEEe--------cCCCCCeEEEEEcCCCCCEEEEEeCCC------cEEEEE
Q 001363 812 KNDAYLFSASG-----GVISLYIVMTFKTILTI--------MPPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 872 (1092)
Q Consensus 812 ~dg~~l~~~sd-----g~i~iwd~~~~~~~~~~--------~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iwd 872 (1092)
.++.+++.|+. ..+.+||..+.+-...- ......-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 56677777652 45889998766433222 11112334455543 466777777543 588899
Q ss_pred cCCce--eeEeeccccCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCceeeeeeee-cCCCCcCCCCCceEEEEccC
Q 001363 873 ARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 873 ~~~~~--~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~d 947 (1092)
..+.+ .+..+......- +++...++++++.||.++ .+.+||..+.......... .+.... ...++.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~----~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL----VSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC----BSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc----ceeEEEEeCC
Confidence 88753 222222111111 233324888999988765 6899999886643322100 111111 1234566665
Q ss_pred -CCEEEEE-e--C-----CcEEEEEcCCcee-----eeeecc--CCCCCEEEEEEecCCCEEEEEECC--------CcEE
Q 001363 948 -QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP--ISSVPISQATFSCDCRMVFTSFVD--------GTLS 1003 (1092)
Q Consensus 948 -g~~la~~-~--d-----~~i~lwd~~~~~~-----~~~~~~--~h~~~v~~l~fs~dg~~l~t~~~D--------g~i~ 1003 (1092)
+++++.| . + +.+.+||..+... -..... .....-.+++...++++++.||.+ ..+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5566654 2 2 3589999987761 111111 111111123333447888888743 4599
Q ss_pred EEEcCCCceE
Q 001363 1004 IHEASNLEVQ 1013 (1092)
Q Consensus 1004 vwd~~~~~~~ 1013 (1092)
+||+.+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999988765
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=91.37 E-value=21 Score=39.70 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=35.9
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceEEEc---------ccccceeEEEEecC
Q 001363 397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP 452 (1092)
Q Consensus 397 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d 452 (1092)
.....|+|.|||. .|+++...|.|++++.........+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4567899999996 56666788999999754321111111221 11356788999997
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=91.26 E-value=28 Score=41.07 Aligned_cols=245 Identities=8% Similarity=0.021 Sum_probs=123.1
Q ss_pred EEe-ecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-----CcEEEEEECCCC
Q 001363 339 SMD-FHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSPDG 408 (1092)
Q Consensus 339 ~v~-~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-----~~V~~l~~spdg 408 (1092)
.+. ++||+++++++-|..| .++++|+.+++.+.. .|. .. ... .....++|..++
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~--------------~k~~~~~~~~~~~~~W~d~~ 196 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PI--------------TNSGKLLEGKFTYPTWINKD 196 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CB--------------CTTCCBCCEETCCEEEEETT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cc--------------cccccccccccceeeEECCC
Confidence 344 8999997766655444 599999999876632 110 00 000 011234666333
Q ss_pred CEEEEE----------eCCCEEEEEEccCCCcccceEEEcccccce-eEEEEecCCCc---EEEEEEeCC---CcEEEEE
Q 001363 409 SLLGVA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQ---ISVITCGDD---KTIKVWD 471 (1092)
Q Consensus 409 ~~las~----------~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~---l~l~s~~~d---~~i~vwd 471 (1092)
..+++. +....|+.|.+.+...-.. ..+.+....+ .....+++++. ..+++.+.+ ..+.+.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 275 (711)
T 4hvt_A 197 TIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILD 275 (711)
T ss_dssp EEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEE
T ss_pred EEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEc
Confidence 333321 1124688888776532211 1233333332 34556777774 235554422 3456666
Q ss_pred CCC--CceeEEEecCCcCeEEEeecccCCccEEEEE----------ecCCeEEEEEcCCC-------CceEE-e-cCCCC
Q 001363 472 AVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSL-------GARVD-Y-DAPGL 530 (1092)
Q Consensus 472 ~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~----------~~dg~i~vwd~~~~-------~~~~~-~-~~~~~ 530 (1092)
... ++ +..+....... +.. ..++.+++.. ...+.|...++... ..... + .....
T Consensus 276 ~~~~~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (711)
T 4hvt_A 276 TKYKNLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE 350 (711)
T ss_dssp CSSSSCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE
T ss_pred CCCCCCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC
Confidence 543 33 22232111111 111 1133444422 24677888988763 12222 2 22344
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-EEEE-EeeccccCCceEEEEEcCCCCEEEE-Ee---CCCcEEE
Q 001363 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIKI 604 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~s---~dg~i~i 604 (1092)
.+..+.+..+ ..+++... ++...+.++++.++. .... +.... .+.+......+++..++. .+ .-+.+..
T Consensus 351 ~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~ 425 (711)
T 4hvt_A 351 VFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYL 425 (711)
T ss_dssp EEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEE
T ss_pred eEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEE
Confidence 6777888765 34444433 446678999987775 2233 22211 145666666677655443 33 3466888
Q ss_pred EECCCCc
Q 001363 605 WDMNKVQ 611 (1092)
Q Consensus 605 wd~~~~~ 611 (1092)
+|.. ++
T Consensus 426 ~d~~-~~ 431 (711)
T 4hvt_A 426 WVKT-HE 431 (711)
T ss_dssp ECTT-SC
T ss_pred EeCC-Cc
Confidence 8876 44
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=90.96 E-value=16 Score=37.82 Aligned_cols=216 Identities=9% Similarity=0.100 Sum_probs=117.4
Q ss_pred ecCCCceEEEEEcC-CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC---
Q 001363 342 FHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK--- 417 (1092)
Q Consensus 342 ~spdg~~llasg~~-dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d--- 417 (1092)
|+++|.++..+... ++.|...+.+....... .. . .+--++++|++|+.+...
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l--------------------~~--~--~~~~i~~~g~~Iyy~~~~~~~ 76 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKL--------------------SN--D--TAMYINADKNYVYYVRNNNQK 76 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEE--------------------EE--E--EEEEEEECSSEEEEEEECC--
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEc--------------------cC--C--ceeeEEEcCCEEEEEECCCCc
Confidence 44567766555433 45566666554443321 11 1 133457899999887543
Q ss_pred -----------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE--eCCCcEEEEECCCCceeEEEecC
Q 001363 418 -----------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 418 -----------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
..|+..++.+++... +... .+..|+++++.++++.. .....|..-++... ....+..+
T Consensus 77 ~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~ 147 (302)
T 3s25_A 77 ITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNH 147 (302)
T ss_dssp ----CCSSCCSEEEEEEETTSCCCEE----EECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESS
T ss_pred ccccceeccCCCeEEEEeCCCCcceE----eecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCC
Confidence 467777777764221 2221 12378889985333331 23445666676543 34445444
Q ss_pred CcCeEEEeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
.. ..+.+ +++.|+-.+. ...|.+-+++.......... ... ..+.|++.+|+...... ...|..-++.
T Consensus 148 ~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~--~~~I~~~~ld 215 (302)
T 3s25_A 148 YL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNR--DNAIVHVNIN 215 (302)
T ss_dssp CC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGG--TTEEEEECSS
T ss_pred Cc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCC--CcEEEEEECC
Confidence 32 23333 4455554444 56787777766554443332 222 34669999998765422 2467777776
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCC
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKV 610 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~ 610 (1092)
.+.. ..+.. ..+ ..|+|++.+|+-++. .+.|..-++...
T Consensus 216 G~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 216 NPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp SCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 6553 33322 223 347888888876543 345666666543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.23 E-value=10 Score=44.95 Aligned_cols=202 Identities=13% Similarity=0.054 Sum_probs=103.3
Q ss_pred cCCCcEEEEEEeCC----CcEEEEECCCCceeEEE-e-----cCCcC-eEEEeecccCCccEEEEEecCC------eEEE
Q 001363 451 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAP-VYSLCPHAKENIHFIFSISVDG------KIKA 513 (1092)
Q Consensus 451 ~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~-~-----~~~~~-v~~i~~~~~~~~~~l~s~~~dg------~i~v 513 (1092)
.++. +++.||.+ ..+.+||..+++-...- . ..... -.+++.. ..++.+++.|+.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEEE
Confidence 4455 66666643 46888998877644322 1 01111 1112221 11456777776543 4677
Q ss_pred EEcCCCCceEEecCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee--ccccCCceEEEEEcCC-
Q 001363 514 WLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA- 589 (1092)
Q Consensus 514 wd~~~~~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~- 589 (1092)
||..+.+-...-..+... -.+++...+++.++.||.+... .+.+||+.+......-.. .........++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 777664322221111111 1233333488888888765543 699999988765433220 1111122333555555
Q ss_pred CCEEEEEeC--C-----CcEEEEECCCCc------eEEEEeCCCCCCCCceEEEccCCCEEEEEeC--------CCeEEE
Q 001363 590 KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNKNGTLLAVIAN--------ENRIKI 648 (1092)
Q Consensus 590 ~~~l~~~s~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~--------dg~i~i 648 (1092)
+..++.|+. + ..+.+||+.+.. .............-..++...++++++.|+. ...+.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 555566654 2 458899998877 2222221100001123333344777777774 345888
Q ss_pred EECCCCcee
Q 001363 649 LETPESNSV 657 (1092)
Q Consensus 649 w~~~~~~~~ 657 (1092)
||..+.+..
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 888776443
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=89.85 E-value=15 Score=37.64 Aligned_cols=222 Identities=13% Similarity=0.102 Sum_probs=107.3
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|..++....- .++. . ||.|..|-......+.. .......|..++...+-. ++. .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------------p~~~~~~i~~ia~G~~hs-~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------------PAATQSGVDAIAAGNYHS-LAL-K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------------CGGGGSCCCEEEECSSEE-EEE-E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------------CccCCCCEEEEEeCCCEE-EEE-E
Confidence 45566555442 2333 3 78888887654332211 000123566666654332 233 4
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
||.|..|-.....++... ..-...|..++...+.. +.-. ||.|..|-....-.+.........|..++.-
T Consensus 80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~hs----~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G- 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWAS----YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG- 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTEE----EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCEE----EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence 888999987654333211 11134677777665432 2234 8999999754322121111123446666542
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
....++ -. ||.|..|-.......-.-......|..++...+...++ . ++.|+.|-....-.+.. ...
T Consensus 150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~- 216 (282)
T 3qhy_B 150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTE- 216 (282)
T ss_dssp --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGG-
T ss_pred --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Ccc-
Confidence 222333 34 79999996654333211111123455555443322222 2 44588886543211111 000
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
....|..++..... .++.. ||.++.|-...
T Consensus 217 -~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 217 -ALSGVSAIASGEWY--SLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -GGSSCCEEEECSSC--EEEEE-TTEEEEESTTC
T ss_pred -cCCCceEEEcCCCE--EEEEE-CCEEEEecCCC
Confidence 11346666655433 33333 88888886554
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=89.47 E-value=22 Score=37.98 Aligned_cols=171 Identities=12% Similarity=0.093 Sum_probs=91.4
Q ss_pred cEEEEECCCC--ceeEEEecC------CcCeEEEeec-ccC----CccE-EEEEecCCeEEEEEcCCCCceEEec----C
Q 001363 466 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE----NIHF-IFSISVDGKIKAWLYDSLGARVDYD----A 527 (1092)
Q Consensus 466 ~i~vwd~~~~--~~~~~~~~~------~~~v~~i~~~-~~~----~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~----~ 527 (1092)
.|.+||+.++ +.++++.-. ...+..+.+. ..+ ++.+ .++-+..+.|.|+|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 888776532 2346777775 211 1233 3444456789999998776544331 1
Q ss_pred C--------------CCceEEEEEccC----CCEEEEEecCCCCceeEEEEe---CCCCeEEE--EEeeccccCCceEEE
Q 001363 528 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWN---ESEGAIKR--TYQGLQLQHNSVSVV 584 (1092)
Q Consensus 528 ~--------------~~~i~~~~~s~d----g~~l~~~~~~~~~~~~i~iwd---~~~~~~~~--~~~~~~~~~~~v~~~ 584 (1092)
. ...+..++++|+ ++.|+.....+. .++-.. ++...... ...+.......-..+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL 280 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence 1 136788999998 777777664321 122221 11111111 112222001233455
Q ss_pred EEc-CCCCEEEEEeCCCcEEEEECCC-C---ceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001363 585 HFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 585 ~~~-~~~~~l~~~s~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
++. .+|..+++--....|..|+..+ . .....+...........+.+.++|.+.+.
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence 675 5666666666888899999876 1 22333332223334455666555543333
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=88.40 E-value=26 Score=41.46 Aligned_cols=241 Identities=9% Similarity=0.011 Sum_probs=117.8
Q ss_pred ECCCCCEEEEE-eC----CCEEEEEEccCCCcccceEEEcccc-----cceeEEEEecCCCcEEEEEE----------eC
Q 001363 404 WSPDGSLLGVA-YS----KHIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAFSAPCKQISVITC----------GD 463 (1092)
Q Consensus 404 ~spdg~~las~-~~----d~~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~~~~s~d~~~l~l~s~----------~~ 463 (1092)
++||+++++.+ |. -..++++|+++++.+.....-.... .....++|..++. ++++. +.
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEITSSLY 214 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBCTTSS
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE--EEEEeCCCCCCcCcCCC
Confidence 89999998876 22 2369999999987553211100000 0123457874443 44432 12
Q ss_pred CCcEEEEECCCCc--eeEEEecCCcCeE-EEeecccCCcc---EEEEEecC---CeEEEEEcCCCCc-eEEecCCCCceE
Q 001363 464 DKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLGA-RVDYDAPGLGCT 533 (1092)
Q Consensus 464 d~~i~vwd~~~~~--~~~~~~~~~~~v~-~i~~~~~~~~~---~l~s~~~d---g~i~vwd~~~~~~-~~~~~~~~~~i~ 533 (1092)
...|+.|.+-+.. -...+.+....+. +.....++... .+++.+.+ ..+.+.+.+.... ...+..+...
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 292 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA-- 292 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC--
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc--
Confidence 3468888776653 2334444444432 22222232221 35554423 3345555543222 2333322221
Q ss_pred EEEEccCCCEEEEEecC------CCCceeEEEEeCCCCe-------EEEE-EeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001363 534 RMAYSANGRRLFSCGTS------KEGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1092)
Q Consensus 534 ~~~~s~dg~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1092)
.+..+.++.+++....+ .-..+.|...|+.++. ..+. +.... ...+..+.+..+ ..+++...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~~~~~~~ 369 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVFLATYDN 369 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEEEEEEET
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEEEEEEEC
Confidence 12344566655543221 0124568888877642 1222 32222 346778888875 566666666
Q ss_pred Cc--EEEEECCCCc-eEEE-EeCCCCCCCCceEEEccCCCEE-EEEeC---CCeEEEEECC
Q 001363 600 HV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTLL-AVIAN---ENRIKILETP 652 (1092)
Q Consensus 600 g~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~~l-~~~~~---dg~i~iw~~~ 652 (1092)
+. +.++++.++. .... +..... ..+.....++++..+ ++.+. -+.+..++..
T Consensus 370 ~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 370 VVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp TEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 64 6677776664 2223 333321 234445555665544 33332 2566666665
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=87.87 E-value=16 Score=39.18 Aligned_cols=171 Identities=13% Similarity=0.175 Sum_probs=93.5
Q ss_pred eEEEEEcCCc--eeeEEecCC------CCCeEEEEEc---CC---CCCEEEEEe-CCCcEEEEEcCCceeeEeec-----
Q 001363 824 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE----- 883 (1092)
Q Consensus 824 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l~----- 883 (1092)
+|.+||+.+. +.++++.-+ ...+..+++. |. ++.++..+. ..+-|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5677888888 777765432 2456778877 21 134444444 35689999999886544331
Q ss_pred ---------cc----cCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCceeee---eeeecCCCCcCCCCCceEEE
Q 001363 884 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 884 ---------~h----~~~V~~l~~spd----g~~l~s~s~Dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~ 943 (1092)
|. ...|..|++||+ ++.|....-.+ -++|.+.+.-.... ..++.. |.......-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 11 246888999998 77777666555 35665543211100 011110 0000001223456
Q ss_pred Ec-cCCCEEEE-EeCCcEEEEEcCC-c---eeeeeeccC-CCCCEEEEEEecCCCEEEEE
Q 001363 944 FH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWFPI-SSVPISQATFSCDCRMVFTS 996 (1092)
Q Consensus 944 ~s-~dg~~la~-~~d~~i~lwd~~~-~---~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~ 996 (1092)
+. .+|.+.++ ...+.|..|+..+ . +....+... .-..+..+.+.++|.+.+++
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 65 56776666 4778899999875 1 111221211 22346667766666655544
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.18 E-value=37 Score=36.77 Aligned_cols=206 Identities=9% Similarity=0.074 Sum_probs=93.3
Q ss_pred CCEEEEEeCCCcEEEEEcCC-ceeeEee--ccccCCeEEEEEcC--CCCEEEEEeCCC----cEEEEEcCCCceeeeeee
Q 001363 856 NNVIAIGMDDSTILIYNARS-SEVISKL--EGHSKRVTGLVFSD--ALNILVSSGGDA----QIFVWDVDGWGIQTCRSL 926 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~-~~~~~~l--~~h~~~V~~l~~sp--dg~~l~s~s~Dg----~I~iwd~~~~~~~~~~~~ 926 (1092)
...|.+|+..| +.+++... ++.-..+ ......|.+|++.| ++.+++.+ ..| .|...+ +.++ ....+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~-D~G~--tW~~~ 96 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSD-DGGG--NWTEA 96 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEES-STTS--CCEEC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeC-CCCC--CceEC
Confidence 44677788777 55555432 2211111 11235699999998 55555544 343 333322 2222 11111
Q ss_pred ecC---CCCcC-----CCCCceEEEEcc---CCCEEEEEeCCcEEEEEcCCceeeeeecc------------------CC
Q 001363 927 QTP---DGVMT-----LAPSETHIQFHK---DQTRFLLVHETHLAIYEAEELTCLKQWFP------------------IS 977 (1092)
Q Consensus 927 ~~~---~~~~~-----~~~~v~~l~~s~---dg~~la~~~d~~i~lwd~~~~~~~~~~~~------------------~h 977 (1092)
... ..... ....|.++++.| .+.+.+.+..+.|...+ ..|+.-..... ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCC
Confidence 111 00000 001477889986 45555555556554432 22222221110 11
Q ss_pred CCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCceEEeecc---ccccCCCCccccccceEEEECCCCCCEEEEEeCCC
Q 001363 978 SVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILS---TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG 1053 (1092)
Q Consensus 978 ~~~v~~l~fs~d-g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg 1053 (1092)
...+.+|.+.|. ...|+.+..++.|... .+.|+....+.. ..+++...........+++++|.++..+.++...|
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~ggl~~s-~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSSGGVFES-TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEETBEEEEE-SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CCceeEEEECCCCCCEEEEEECCCCEEEE-CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 235788999873 3444445444443322 233433322221 01111110000112346788886567777776554
Q ss_pred cEEEEecCCCCCccccCC
Q 001363 1054 EVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus 1054 ~v~~w~~~~~~~~~~~~~ 1071 (1092)
||...+.+..|....
T Consensus 255 ---l~~s~D~G~tW~~~~ 269 (394)
T 3b7f_A 255 ---IYRMDRREGVWKRIG 269 (394)
T ss_dssp ---EEEEETTTTEEECGG
T ss_pred ---EEEeCCCCCcceECC
Confidence 344445566676553
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=82.56 E-value=1.1 Score=40.01 Aligned_cols=55 Identities=15% Similarity=0.308 Sum_probs=43.0
Q ss_pred hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccc
Q 001363 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDH 127 (1092)
Q Consensus 72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 127 (1092)
++|.|+-+.||||+..|..++|..++.+.-..+... .+..++|..+.......++
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n 87 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHEN 87 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhC
Confidence 899999999999999999999999999866656555 7777777776665554443
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=82.33 E-value=47 Score=33.92 Aligned_cols=183 Identities=10% Similarity=0.010 Sum_probs=95.3
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
.|..++...+-. ++. .+|.+..|-......+..-..-...|..++... ...+.-. ||.|+.|-....-.+..-.
T Consensus 64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 455555543322 223 377787776543222111111124688888764 3444445 9999999765532221111
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEE
Q 001363 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 963 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd 963 (1092)
.....|..++...+. .++ .. ||.|..|-........ .+.... ..|..++...+...++ .++.|+.|-
T Consensus 138 ~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg-----~p~~~~---~~v~~i~~G~~hs~al--~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTT-----VPAEAQ---SGVDDVAGGIFHSLAL--KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTS-----CCGGGG---SSEEEEEECSSEEEEE--ETTEEEEEE
T ss_pred cCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCC-----CceecC---CCeEEEEecCCEEEEE--ECCeEEEEE
Confidence 234567777765442 333 34 7999999766422111 111001 2466676655555444 689999997
Q ss_pred cCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001363 964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
....-.+.... .....|..++--.+- .++.. ||.|+.|=...
T Consensus 205 ~n~~gqlg~p~-~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 205 DNRYKQTTVPT-EALSGVSAIASGEWY-SLALK--NGKVIAWGSSR 246 (282)
T ss_dssp CCTTSTTCCCG-GGGSSCCEEEECSSC-EEEEE--TTEEEEESTTC
T ss_pred CCCCCCCCCCc-ccCCCceEEEcCCCE-EEEEE--CCEEEEecCCC
Confidence 65432222111 113456666644433 33333 89999996544
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=80.61 E-value=59 Score=33.97 Aligned_cols=158 Identities=8% Similarity=0.090 Sum_probs=90.4
Q ss_pred CCCeeEEEEec---CCCEEEEEe-CCeEEEEEcCCceee-------EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 001363 802 QEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTI-------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1092)
Q Consensus 802 ~~~v~~~~~s~---dg~~l~~~s-dg~i~iwd~~~~~~~-------~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1092)
...|.++..-+ +..+++..+ .|.++--.+...... ..+.. .+.+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 34455544333 466777776 699998887653322 22333 34555555544 4567778889999888
Q ss_pred EEcC--C---------ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-----eeeeecCCCCcC
Q 001363 871 YNAR--S---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMT 934 (1092)
Q Consensus 871 wd~~--~---------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~-----~~~~~~~~~~~~ 934 (1092)
+... . |...-.+. ....|.++...+++..|+.++..|.++.-.+..-.... ...+...+..
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~-- 248 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR-- 248 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence 8776 2 11112232 34567777777777789999999999988876532211 1111111101
Q ss_pred CCCCceEEEE-ccCCCEEEEEeCCcEEEEEcCC
Q 001363 935 LAPSETHIQF-HKDQTRFLLVHETHLAIYEAEE 966 (1092)
Q Consensus 935 ~~~~v~~l~~-s~dg~~la~~~d~~i~lwd~~~ 966 (1092)
+.+..+.. ..+...++++.+|.+.-++...
T Consensus 249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 249 --GRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp --CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred --CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 12444433 3334455557777777777653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1092 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-12 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.004 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.004 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.004 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.003 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.0 bits (193), Expect = 3e-16
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 435
K+WD+ +N + + P+G+ +L+ +
Sbjct: 209 KLWDVREGMCRQT---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495
+ G + ++FS + + + DD VWDA+ R GH V L
Sbjct: 266 HDNIICG-ITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 496 KENIHFIFSISVDGKIKAW 514
+ + S D +K W
Sbjct: 323 DGM--AVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.5 bits (184), Expect = 4e-15
Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 11/150 (7%)
Query: 459 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK--AWLY 516
++ D + K+WD G +F GH + + ++C N + S D +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRA 257
Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
D +D G T +++S +GR L + W+ + G
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN----CNVWDALKADRAGVLAG--- 310
Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
N VS + + D +KIW+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.8 bits (182), Expect = 8e-15
Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 10/164 (6%)
Query: 754 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813
+ V + P L +S +L+ R G T + + + N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ----TFTGHESDINAICFFPN 237
Query: 814 DAYLFSASGG---VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870
+ S + + TS++F+ ++ G DD +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296
Query: 871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
++A ++ L GH RV+ L +D + + D+ + +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.3 bits (147), Expect = 2e-10
Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 8/155 (5%)
Query: 851 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910
D + G D++ +++ R GH + + F N + DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 911 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-HLAIYEAEELTC 969
++D+ S +T + F K L ++ + +++A +
Sbjct: 251 RLFDLRADQELMTYSHDNIICGIT------SVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 970 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004
+S + D V T D L I
Sbjct: 305 AGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.2 bits (139), Expect = 2e-09
Identities = 40/293 (13%), Positives = 95/293 (32%), Gaps = 11/293 (3%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+ + W D LL A + ++ + + I V A++ ++
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVA 113
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
+ +I G+ S E G Y + + I + S D W +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ + ++ + + R S ++ W+ EG ++T+ G
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSG----ACDASAKLWDVREGMCRQTFTG---H 225
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637
+ ++ + F + DD +++D+ Q L T + + F+K+G LL
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690
++ + + +++ + + L V G + + +
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.8 bits (138), Expect = 2e-09
Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 23/144 (15%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
QT S ++ F P + TG D
Sbjct: 220 QTFTGHESDINAICFFPNGNAFA--------TGSDD----------ATCRLFDLRADQEL 261
Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
T + + V +S G LL Y ++ + + H V+ L
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCL 318
Query: 448 AFSAPCKQISVITCGDDKTIKVWD 471
+ + T D +K+W+
Sbjct: 319 GVTDDGMAV--ATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.8 bits (138), Expect = 3e-09
Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 10/217 (4%)
Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
R + + H+ + + + + + ++ D + +WD+ T ++ ++ + V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLL--VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551
+ +++ +D + + V G T TS
Sbjct: 104 AYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
+ + E+ V + ++ D K+WD+ +
Sbjct: 162 GDTTCALWDIETGQQTTTFTG----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
T ICF NG A +++ ++
Sbjct: 218 CRQTFTGHESDINA--ICFFPNGNAFATGSDDATCRL 252
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.0 bits (110), Expect = 8e-06
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 11/130 (8%)
Query: 825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKL 882
L+ V T ++ F P + N A G DD+T + A +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942
+ +T + FS + +L++ D VWD L D + + +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRV------SCL 318
Query: 943 QFHKDQTRFL 952
D
Sbjct: 319 GVTDDGMAVA 328
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.5 bits (184), Expect = 4e-15
Identities = 43/311 (13%), Positives = 86/311 (27%), Gaps = 65/311 (20%)
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
+ H V + F + ++ +D TIKVWD TG + +GH V +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 497 ENIH----------------------------------------FIFSISVDGKIKAWLY 516
+ I S S D IK W
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
+ + + + +G + SC + + W + K + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ----TVRVWVVATKECKAELREHRH 186
Query: 577 QHNSVS-----------------VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619
+S +L+ D IK+WD++ L T+
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246
Query: 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679
+ F+ G + A++ +++ + + + L + +
Sbjct: 247 DNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304
Query: 680 GAGIANGSVSV 690
G + +V V
Sbjct: 305 VTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.8 bits (182), Expect = 7e-15
Identities = 44/326 (13%), Positives = 94/326 (28%), Gaps = 55/326 (16%)
Query: 323 PKTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------- 370
P+ + + G SP + FHP ++++ + +WD +G
Sbjct: 5 PRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63
Query: 371 ------------FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418
+ + +V+ V P+G + A
Sbjct: 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123
Query: 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478
++++ H V + + I +C +D+T++VW T
Sbjct: 124 TIKMWEVQ---TGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECK 178
Query: 479 YSFEGHGAPVYSLCPHAKENI------------------HFIFSISVDGKIKAWLYDSLG 520
H V + + + F+ S S D IK W +
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238
Query: 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580
+ + + + G+ + SC + L W+ +T +
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNA---HEHF 291
Query: 581 VSVVHFDTAKDQILAAGDDHVIKIWD 606
V+ + F ++ D +K+W+
Sbjct: 292 VTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.2 bits (178), Expect = 2e-14
Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 8/174 (4%)
Query: 742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 801
N G I + +++ +W + V + +++ T S
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE- 209
Query: 802 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
K +L S S I ++ V T ++T++ + F+ I
Sbjct: 210 -----TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFIL 263
Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
DD T+ +++ ++ + L H VT L F +V+ D + VW+
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.1 bits (136), Expect = 4e-09
Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 28/167 (16%)
Query: 806 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNP----------- 853
+++ + S S + +++V T + + +++ P
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 854 --------HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905
+ G D TI +++ + + L GH V G++F ++S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266
Query: 906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
D + VWD + ++L + + T + FHK +
Sbjct: 267 DDKTLRVWDYKNK--RCMKTLNAHEHFV------TSLDFHKTAPYVV 305
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.2 bits (113), Expect = 3e-06
Identities = 17/170 (10%), Positives = 54/170 (31%), Gaps = 9/170 (5%)
Query: 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
T + F+P +V+ +D+TI +++ + + L+GH+ V + F + +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL------ 73
Query: 907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966
+ + + + + + + + + +
Sbjct: 74 --LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016
+ F + + D ++ + D T+ + + E + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.7 bits (109), Expect = 1e-05
Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 20/187 (10%)
Query: 871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930
+ R E + L GH VT ++F +++VS+ DA I VWD + R+L+
Sbjct: 3 WIPRPPEKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHT 59
Query: 931 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 990
S I F + + +S + +
Sbjct: 60 D------SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 991 RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050
+ ++ D T+ + E T H + T A
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVK-----------TFTGHREWVRMVRPNQDGTLIASCS 162
Query: 1051 TNGEVYV 1057
+ V V
Sbjct: 163 NDQTVRV 169
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.5 bits (176), Expect = 6e-14
Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 27/193 (13%)
Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
++ P + G+ +WD +G + + +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--------- 255
Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV---------GNVN 445
SV VV++ DG + V+L+ ++ ++ V
Sbjct: 256 ---SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----F 501
+A + + I ++ D+ + WD +G+ +GH V S+ ++
Sbjct: 313 SVATTQNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370
Query: 502 IFSISVDGKIKAW 514
+ S D K + W
Sbjct: 371 FATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.1 bits (175), Expect = 8e-14
Identities = 44/398 (11%), Positives = 116/398 (29%), Gaps = 54/398 (13%)
Query: 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH-NSVSVVHFDTAKDQILAA 596
+ + + + + +++ +N + L H + V V F + LA
Sbjct: 22 DLDSQSVPDALKKQTNDYYIL-YNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLAT 79
Query: 597 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656
G + +++ ++ L+ + ++P E+ +
Sbjct: 80 GCNKTTQVYRVSDGSLVARLSDDSAANKDP--------------------------ENLN 113
Query: 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716
++ +R + +P G +A G+ + +I + + + L
Sbjct: 114 TSSSPSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169
Query: 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
PS + + T V + + S +
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229
Query: 777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-------------GG 823
+V + + + + +++V +++ + S S
Sbjct: 230 RVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288
Query: 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883
+ +T + S+A ++ I G D +L ++ +S + L+
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347
Query: 884 GHSKRVTGLVFSDAL------NILVSSGGDAQIFVWDV 915
GH V + ++ N+ + GD + +W
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.7 bits (161), Expect = 4e-12
Identities = 41/337 (12%), Positives = 104/337 (30%), Gaps = 26/337 (7%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
++ +S + F L G N T ++ V+ L R
Sbjct: 56 HKSLDHTSVVCCVKFSN-DGEYLATGCN-KTTQVYRVSD-GSLVARLSDDSAANKDPENL 112
Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
T+ + + V +SPDG L +++++ +++ + +
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-----NRKIVMILQGHEQDIY 167
Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
+ +++ D+T+++WD TG + + +I + S+
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSL 225
Query: 508 DGKIKAWLYDSLGARVDYDAPGL-------GCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
D ++ W ++ D+ + ++ +G+ + S + + + ++
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285
Query: 561 NESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
++ K G + V V + IL+ D + WD L
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345
Query: 616 IDAGGG----LPENPRICFNKNGTLLAVIANENRIKI 648
+ + + A + + + +I
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 17/171 (9%)
Query: 851 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------GHSKRVTGLVFSDALNILVS 903
+P D IA G D + ++++ + ++ +L+ GH V +VF+ +VS
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271
Query: 904 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH----IQFHKDQTRFLLVHETH- 958
D + +W++ ++ + ++ L +
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331
Query: 959 LAIYEAEELTCLKQW----FPISSVPISQ-ATFSCDCRMVFTSFVDGTLSI 1004
+ ++ + L + SV ++ ++ + + T D I
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 4e-06
Identities = 44/345 (12%), Positives = 95/345 (27%), Gaps = 43/345 (12%)
Query: 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396
P +D L L++ + D+ L T+
Sbjct: 18 PFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVELHKSLDHTS------ 63
Query: 397 VSVNRVVWSPDGSLLGVAYSKHIV--------QLYAYHGGSDARQQLEI------DAHVG 442
V V +S DG L +K + S A + E +
Sbjct: 64 -VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122
Query: 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502
+ + FS K + T +D+ I++WD +GH +Y + +
Sbjct: 123 YIRSVCFSPDGKFL--ATGAEDRLIRIWDIENRKIVMILQGHEQDIY--SLDYFPSGDKL 178
Query: 503 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562
S S D ++ W + + T +G+ + + + + E
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
+ + +SV V F +++ D +K+W++ +
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 623 PENP----------RICFNKNGTLLAVIANENRIKILETPESNSV 657
+ +N + + + + + N +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.7 bits (96), Expect = 4e-04
Identities = 45/295 (15%), Positives = 100/295 (33%), Gaps = 21/295 (7%)
Query: 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP 841
LY P + V + V C S + YL + +Y V + +
Sbjct: 42 LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSD 101
Query: 842 PSPTA------------------TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883
S S+ F+P D +A G +D I I++ + +++ L+
Sbjct: 102 DSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ 160
Query: 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943
GH + + L + + + LVS GD + +WD+ S++ + ++P +
Sbjct: 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220
Query: 944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1003
R + V ++ + E L + + F+ D + V + +D ++
Sbjct: 221 AAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279
Query: 1004 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF-AVGLTNGEVYV 1057
+ N + + + + ++ + ++ G + V
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 0.001
Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 7/221 (3%)
Query: 841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS----KLEGHSKRVTGLVFSD 896
P P L + + ++YN I K H+ V + FS+
Sbjct: 14 KPIPPF-LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 72
Query: 897 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
L + G + V+ V + S + + + R +
Sbjct: 73 DGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131
Query: 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016
+ E ++ W + + F G + + + V+
Sbjct: 132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191
Query: 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1057
L T T + +A P A G + V V
Sbjct: 192 LRTGQ-CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.7 bits (166), Expect = 1e-12
Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 5/184 (2%)
Query: 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRVTGLVFSDALNILVSS 904
+ A+N D IAI ++ + IY + + +L+ H+ +VTG+ ++ N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 905 GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964
G D +VW + G + + + + + + + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQE 127
Query: 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1024
+ K + + + ++ D I A EV+ R T +
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 1025 TTSC 1028
Sbjct: 188 MPFG 191
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.6 bits (158), Expect = 9e-12
Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 20/257 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
++ W+ D + + + + H V +Y G Q E+ H G V + ++ +I
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
+TCG D+ VW + + + C N S I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 518 SLGARVDYDAPGLGCTRMAYSANGR---------------RLFSCGTSKEGESFLVEWNE 562
S + R+FS + E
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
S+ V V F ++ D + + D +K + T+ +
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244
Query: 623 PENPRICFNKNGTLLAV 639
+ F +L+A
Sbjct: 245 -PLLAVTFITESSLVAA 260
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 35/284 (12%), Positives = 75/284 (26%), Gaps = 25/284 (8%)
Query: 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW----DIGACSMLFKTAL 391
VG+ + ++ + + + L
Sbjct: 96 RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 155
Query: 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451
+ ++S + + E + G V+ + FSA
Sbjct: 156 LAAGSCDFKCRIFSAYIKEV----EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211
Query: 452 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 511
++ D T+ + DA + P+ ++ + ++ + D
Sbjct: 212 NGSRV--AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL---VAAGHDCFP 266
Query: 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571
+ YDS ++ + + + R K+ S EG+
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS--------EGSAAAGA 318
Query: 572 QGLQLQHNSVSVVHF----DTAKDQILAAGDDHVIKIWDMNKVQ 611
L NSVS + Q G D + IWD+ ++
Sbjct: 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 11/114 (9%), Positives = 29/114 (25%), Gaps = 6/114 (5%)
Query: 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866
+ + + L+ + L+ + +D
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 867 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVD 916
+A + + H V+ + + ++G D + +WDV
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.5 bits (90), Expect = 0.002
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQIS--VITCGDDKTIKVWDAVTGSRT 478
GS A H +V+ ++ + K T G D + +WD +
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.1 bits (159), Expect = 6e-12
Identities = 48/365 (13%), Positives = 111/365 (30%), Gaps = 32/365 (8%)
Query: 568 KRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625
+ T +G H + ++ + F+ + ++ DD +I+++D + L + G
Sbjct: 5 RTTLRG----HMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58
Query: 626 PRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684
+ + G L++ R+ ++ V + + G
Sbjct: 59 --LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 744
+ ++ V + PKE P+ E + PL E + R +
Sbjct: 117 DNTLHVWKLPKESSVPDHG------EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170
Query: 745 GGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT------ 797
G + N + + + LS R DTT
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230
Query: 798 -----DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 852
Q L + ++ S+ +++
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 853 PHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911
+N++ G ++ IYN RS +++ + + + ++ + F ++ + D Q F
Sbjct: 291 YVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348
Query: 912 VWDVD 916
+ +D
Sbjct: 349 LEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.0 bits (138), Expect = 3e-09
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKEN 498
H N++ + I + G + +++ +G ++ ++S+ K
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 499 IHFIFSISVDGKIKAWLYD 517
+ ++ DG+ + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 9/149 (6%)
Query: 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
T L F ++N + G DD I +Y++ + + + +L GH V L ++ ILVS
Sbjct: 17 TCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72
Query: 907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966
D + VWD+ +++ + + L +++ +
Sbjct: 73 DRTVRVWDIKKGCCTHVFEGHNSTVRCL-----DIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 967 LTCLKQWFPISSVPISQATFSCDCRMVFT 995
+ + P+ T + V
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 8/151 (5%)
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
VIT DDK I+V+D++ GH V++L + + S S D ++ W
Sbjct: 26 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA---HGGILVSGSTDRTVRVWDIK 82
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
++ + + S++ + W + + + +
Sbjct: 83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGE---E 137
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608
H+ V H + H+ + ++
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.001
Identities = 42/323 (13%), Positives = 88/323 (27%), Gaps = 22/323 (6%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
L ++ + L+ T+ + +
Sbjct: 47 LQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105
Query: 388 KTALVRDPGVSVNRV-VWS-PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 445
K G N + VW P S + +H L + + + H+ +V
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165
Query: 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505
V++ D T+ VWD Y GH +Y S
Sbjct: 166 T----VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHERKRCISA 219
Query: 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565
S+D I+ W + + + + G S +
Sbjct: 220 SMDTTIRIWDL--------ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 271
Query: 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625
R + ++++ + D IL +G ++ I+++ +L+
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVS---DNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328
Query: 626 PRICFNKNGTLLAVIANENRIKI 648
+ F TL+A + + + +
Sbjct: 329 -SVNFK-GKTLVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.004
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462
+ + + ++++Y + L++ H G V L ++ +++
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGGI---LVSGS 71
Query: 463 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
D+T++VWD G T+ FEGH + V L +NI +I + S D + W
Sbjct: 72 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 46/369 (12%), Positives = 116/369 (31%), Gaps = 42/369 (11%)
Query: 560 WNESEGAIKRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
W E + +G H+ ++ + F ++I++ DD+ +K+W + L T+
Sbjct: 1 WRRGELKSPKVLKG----HDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV 54
Query: 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677
++ + + +K+ + + +R + ++
Sbjct: 55 G----HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 110
Query: 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 737
V+G+ A V E + V A + + + +
Sbjct: 111 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV----------- 159
Query: 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797
++ + L + + +S T + R++ G
Sbjct: 160 -KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI--RVWDVETGNCIHTLTGH 216
Query: 798 DSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 856
S + D L S + + ++ + T + + T+ P+ +++ +
Sbjct: 217 QS------LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270
Query: 857 NVIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDALNILVSSGGD---- 907
N + DD T+ +++ ++ E I L G V + S+ + +
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330
Query: 908 AQIFVWDVD 916
++ V D D
Sbjct: 331 TKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 3e-09
Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 32/245 (13%)
Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
+ + + H +V C +++ DD T+KVW AVTG + GH V
Sbjct: 4 GELKSPKVLKGHDDHVIT-CLQ-FCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 489 YSLC-----PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543
+S + + + + + V R
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120
Query: 544 LFSCGTSKEGESF---------------LVEWNESEGAIK-----RTYQGLQLQHNSVSV 583
++ T + V + +K LQ ++ V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180
Query: 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643
+++ D I++WD+ + T+ ++ +L +
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELKDNILVSGNAD 236
Query: 644 NRIKI 648
+ +KI
Sbjct: 237 STVKI 241
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 3e-09
Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 31/309 (10%)
Query: 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407
++ G++ +W +G+ +R G S + ++ VW+ +
Sbjct: 28 NRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 85
Query: 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS---------- 457
H + H DA + + +
Sbjct: 86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145
Query: 458 ----VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 513
V++ D +KVWD T + ++ +GH VYSL + S S+D I+
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI----HVVSGSLDTSIRV 201
Query: 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573
W ++ + G L S +S + W+ G +T QG
Sbjct: 202 WDVET--GNCIHTLTGHQSLTSGMELKDNILVSG----NADSTVKIWDIKTGQCLQTLQG 255
Query: 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICF 630
++V+ + F+ K+ ++ + DD +K+WD+ ++ L T+++GG RI
Sbjct: 256 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313
Query: 631 NKNGTLLAV 639
+ + AV
Sbjct: 314 SNTKLVCAV 322
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 13/158 (8%)
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
V++ D +I+VWD TG+ ++ GH + + + + S + D +K W
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD----NILVSGNADSTVKIWDIK 245
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ P + + + S +G L W+ G R L+
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302
Query: 578 H--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK 609
V + K + + + D +
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 6e-04
Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 27/204 (13%)
Query: 854 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913
N I G DD+T+ +++A + + + L GH+ V D NI++S D + VW
Sbjct: 25 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVW 82
Query: 914 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 973
+ + T + + +D T + E +
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------------TGQCL 130
Query: 974 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1033
+ + D R V + D + + + L +
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT-------------LQGHT 177
Query: 1034 HAIAAHPLKPTQFAVGLTNGEVYV 1057
+ + + G + + V
Sbjct: 178 NRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 60.9 bits (146), Expect = 3e-10
Identities = 36/361 (9%), Positives = 85/361 (23%), Gaps = 29/361 (8%)
Query: 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE- 643
+ ++ + + + D+ + + P + V+ N
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHY 61
Query: 644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG----IANGSVSVNEDPKEDVK 699
I ++ + A + S ++ G D
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759
P + V + KP+ P Q L+ + +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRA---------------ADDGSLYVAGPDIY 166
Query: 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 819
T++ P + S +
Sbjct: 167 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 226
Query: 820 ASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878
+ T KT + + +P D N I + + Y+ + ++
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKL 284
Query: 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 938
I + F + L G + V++ D + ++++ P G M+
Sbjct: 285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIKLPGGDMSTTTP 341
Query: 939 E 939
+
Sbjct: 342 Q 342
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 54.0 bits (128), Expect = 4e-08
Identities = 35/319 (10%), Positives = 76/319 (23%), Gaps = 34/319 (10%)
Query: 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC 383
++ P + P T ++ + GD D+++ + F N
Sbjct: 29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE-- 86
Query: 384 SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-----------R 432
G S+ SPDG + + Y
Sbjct: 87 -----------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135
Query: 433 QQLEIDAHVGNVNDLAFSAPCKQI------SVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486
+ + V + + + K +R
Sbjct: 136 KPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 195
Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546
+ E + L G T A+ L+
Sbjct: 196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255
Query: 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVI 602
G + + + A Q ++ ++ V FD D++ G + +
Sbjct: 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 315
Query: 603 KIWDMNKVQLLTTIDAGGG 621
+++ + ++ + I GG
Sbjct: 316 AVFNPDTLEKVKNIKLPGG 334
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (89), Expect = 0.003
Identities = 13/167 (7%), Positives = 40/167 (23%), Gaps = 18/167 (10%)
Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---------KVWDIG 381
+ + P + + + + K ++ D+
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238
Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
+ D + SP + + + Y + ++
Sbjct: 239 TGKTHTQE--FADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLKQR----KLIKAANLD 291
Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
+AF + + G + V++ T + + + G +
Sbjct: 292 HTYYCVAFDKKGDK--LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.2 bits (87), Expect = 0.004
Identities = 20/186 (10%), Positives = 43/186 (23%), Gaps = 14/186 (7%)
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 505
A A + + I + V D + + S + ++
Sbjct: 2 PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58
Query: 506 SVDGKIKAW------LYDSLGARVDYDAPGLGCTRMAYSANGRRLF--SCGTSKEGESFL 557
+ G I G A S +G+ ++ T + + ++
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
Query: 558 VEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
V+ E + V+ A D I D+ +
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178
Query: 616 IDAGGG 621
+
Sbjct: 179 LPLRNW 184
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 1e-09
Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 44/304 (14%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------------- 370
E S + + ++ G +WD N+ +
Sbjct: 9 HCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 371 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428
I + + L + + ++ + ++
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125
Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
+D + + H VN + F + D+TIKVW+ T + GH +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIV----SASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548
L + S S D I+ W D G + +R+ S
Sbjct: 182 ACLQYRD----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG- 234
Query: 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQH------NSVSVVHFDTAKDQILAAGDDHVI 602
+ + W+ R G V + FD + QI+++ D I
Sbjct: 235 ---AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTI 289
Query: 603 KIWD 606
IWD
Sbjct: 290 LIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 4e-08
Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 20/209 (9%)
Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 499
V L + +++ D TIK+WD T GH V L + I
Sbjct: 14 TSKGVYCLQYDDQ----KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69
Query: 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559
+V +A + S
Sbjct: 70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV---------- 119
Query: 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619
W+ + L + +V D I++A D IK+W+ + + + T++
Sbjct: 120 WDMAS--PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG- 176
Query: 620 GGLPENPRICFNKNGTLLAVIANENRIKI 648
+ C L+ +++N I++
Sbjct: 177 ---HKRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (110), Expect = 5e-06
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 15/119 (12%)
Query: 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 864
L D + S S I L+ + + + DN I G
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAY 236
Query: 865 DSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
D I +++ ++ + L HS RV L F + +VSS D I +WD
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 3e-05
Identities = 27/211 (12%), Positives = 62/211 (29%), Gaps = 27/211 (12%)
Query: 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
L + D+ I G+ D+TI I++ + E L GH+ V L + + + I
Sbjct: 19 YCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII------ 69
Query: 907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966
D + + + + +A+++
Sbjct: 70 -----TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1026
T + + + D + + ++ D T+ + S E
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR------------ 172
Query: 1027 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1057
L+ + IA + G ++ + +
Sbjct: 173 -TLNGHKRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.0 bits (138), Expect = 2e-09
Identities = 32/322 (9%), Positives = 84/322 (26%), Gaps = 25/322 (7%)
Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
+ + + P + + G+ F+R D G +
Sbjct: 18 NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61
Query: 395 PGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYHGGSDARQQL-----EIDAHVGNVNDL 447
V V +SP L V ++ + ++ E G ++D+
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
++ +++ V+ G D +G+ GH + + + +
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 508 DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
+ + D G + + + + ++ G
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISCFDGKSGEF 240
Query: 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
+ + Q + G D I++WD+ + + N +
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
Query: 628 ICFNKNGT-LLAVIANENRIKI 648
+ G + ++ + +
Sbjct: 301 VGVVATGNGRIISLSLDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 458 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
T G D TI+VWD T + ++ + + A N I S+S+DG + +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 10/168 (5%)
Query: 835 TILTIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGH-S 886
++ I+PP P T L+++P N + + + + S+V + + GH S
Sbjct: 4 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63
Query: 887 KRVTGLVFSDALN--ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 944
VT + FS L S ++ VW + LA + I +
Sbjct: 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123
Query: 945 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 992
+ R +V E +S
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 5e-06
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 852 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL---VFSDALNILVSSGGDA 908
+ D+ A D+TI +++ +S+ + K +++ V + ++S D
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 909 QIFVWDV 915
+ +++
Sbjct: 319 TLNFYEL 325
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 7e-09
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+ + + P G + + + + ++ H V L F+ K
Sbjct: 226 QIFSLGYCPTGEW----LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
++ G D + W G+ + + V S + +I + S D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK--YIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 9e-09
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 848 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 907
SL F D+ + + I + S V S +V+ GD
Sbjct: 270 SLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGD 327
Query: 908 AQIFVWDV 915
+ V++V
Sbjct: 328 KKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 31/275 (11%), Positives = 73/275 (26%), Gaps = 19/275 (6%)
Query: 376 KVWDIGACSMLFKTALVRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
KVWDI + + + PDG L V + ++ + +
Sbjct: 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134
Query: 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
+ S + G+ + + +T + G + C
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCI 189
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
+ +++ +D +++W +D + Y G L S
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248
Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
E V L L + V + F ++ G D+++ W +
Sbjct: 249 EVLHVNKP--------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300
Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
+ + + + + + + +
Sbjct: 301 FQSKESSSV---LSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461
+ ++ G +++ + G + +V S K I +T
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLSCDISVDDKYI--VTG 324
Query: 462 GDDKTIKVWD 471
DK V++
Sbjct: 325 SGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 14/111 (12%)
Query: 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
F+ A+ P S + + DG + V + + G +Q+ H V
Sbjct: 3 FQGAMGSKPAYSFH---VTADGQMQPVPFPPDAL---IGPGIPRHARQINTLNHGEVVCA 56
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHGAPVYSLC 492
+ S P + + G +KVWD + S
Sbjct: 57 VTISNPTRHVY---TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.001
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 5/129 (3%)
Query: 864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 923
D+ I R + I+ L H + V + S+ + + GG + VWD+ G ++
Sbjct: 30 PDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSP 87
Query: 924 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ 983
S + D ++ E + ++S +
Sbjct: 88 VSQLDCLNRDNYI---RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144
Query: 984 ATFSCDCRM 992
+
Sbjct: 145 YALAISPDS 153
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.002
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 8/75 (10%)
Query: 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591
+ ++ G+ S G L W GA + +SV
Sbjct: 268 VLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGASIFQSKE----SSSVLSCDISVDDK 319
Query: 592 QILAAGDDHVIKIWD 606
I+ D +++
Sbjct: 320 YIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.004
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 806 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 864
+ + S +++ + +I S S + D+ I G
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-VLSCDISV-DDKYIVTGSG 326
Query: 865 DSTILIYN 872
D +Y
Sbjct: 327 DKKATVYE 334
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.4 bits (131), Expect = 1e-08
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL 898
+ P + +++A G D+ I IY+ + ++I L H V L++
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269
Query: 899 NILVSSGGDAQIFVWDV 915
+ LVSSG DA I W+V
Sbjct: 270 STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
I H + L + +I+ D I W + + + H + SL
Sbjct: 9 ISGHNKGITALTVN------PLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57
Query: 497 ENIHFIFS 504
+ I
Sbjct: 58 QEYSSISW 65
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 3e-05
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 459 ITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
T D I ++ + H V +L + S D IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473
++AH VN+L + P +++ G D IK W+ V
Sbjct: 254 LNAHKDGVNNLLWETPST---LVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916
EV+ + GH+K +T L + L+S D +I W
Sbjct: 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (89), Expect = 0.002
Identities = 28/248 (11%), Positives = 61/248 (24%), Gaps = 34/248 (13%)
Query: 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
T+L NP + G D I+ +++ S + HS + L S A S
Sbjct: 17 TALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWD 66
Query: 907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA------ 960
D + + T + ++ L
Sbjct: 67 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126
Query: 961 ------------------IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 1002
+++ +L S + S + V G +
Sbjct: 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186
Query: 1003 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062
+++ + EV+ + + ++ A G + +++
Sbjct: 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246
Query: 1063 PGDTWAVL 1070
P L
Sbjct: 247 PMKIIKAL 254
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.0 bits (128), Expect = 4e-08
Identities = 36/329 (10%), Positives = 83/329 (25%), Gaps = 22/329 (6%)
Query: 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKI 648
+D ILA + + D K+ + I P G + N+ +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708
++ L +ST + +++ D K E V E
Sbjct: 61 IDL-------------VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107
Query: 709 KSEV-EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767
+ A + +I+ L + G ++ G L P
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY---GLGRDLHVMDPEAG 164
Query: 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISL 827
+ + Y + + A + G++++
Sbjct: 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224
Query: 828 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 887
+ + + S A NP + + ++ + I ++
Sbjct: 225 DLETGEMAMREVRIMDVFYFSTAVNPAKT---RAFGAYNVLESFDLEKNASIKRVP-LPH 280
Query: 888 RVTGLVFSDALNILVSSGGDAQIFVWDVD 916
+ S + + G + +D +
Sbjct: 281 SYYSVNVSTDGSTVWLGGALGDLAAYDAE 309
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 26/300 (8%), Positives = 75/300 (25%), Gaps = 29/300 (9%)
Query: 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQ 433
V D ++ K + D G + + +P G + S+ +V++ G + R
Sbjct: 14 VVIDTEKMAVD-KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72
Query: 434 QLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492
L A S K +++ + ++ + +
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 493 PHAK-------ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545
+ + ++ + D + +L +
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 546 SCGTSKEGESFLVEWNESEGAIKRTYQGL-------------QLQHNSVSVVHFDTAKDQ 592
+ + GL +++ V +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKILET 651
A G +V++ +D+ K + + + + +G+ + + + +
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHS----YYSVNVSTDGSTVWLGGALGDLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 33/314 (10%), Positives = 79/314 (25%), Gaps = 40/314 (12%)
Query: 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK 388
T+ + +PM P D+ +G+ L +
Sbjct: 28 TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------- 77
Query: 389 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--------SDARQQLEIDAH 440
+ S+ SPDG L + S ++L + ++ + +
Sbjct: 78 ----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133
Query: 441 VGNVNDLAFS-------APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
+ LA++ + + V+ ++ + + V++
Sbjct: 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
+ ++ D G D FS +
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 554 ------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607
+ L ++ + A + +S V+ T + G + +D
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
Query: 608 NKVQLLTTIDAGGG 621
++ +D G
Sbjct: 309 ETLEKKGQVDLPGN 322
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (89), Expect = 0.002
Identities = 13/165 (7%), Positives = 40/165 (24%), Gaps = 12/165 (7%)
Query: 458 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515
++ + V D + + + G +++ +
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKID 62
Query: 516 YDSLGARVDYDAP-----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570
+ D A S +G+ L + E E + A+
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 571 YQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
+ ++++ + ++ G D + + +
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (88), Expect = 0.003
Identities = 15/164 (9%), Positives = 44/164 (26%), Gaps = 9/164 (5%)
Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390
S P + + G + + + + + G +M +T
Sbjct: 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229
Query: 391 ---LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
+ + V + + + + ++++ + ++ + +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN----ASIKRVPLPHSYYSV 285
Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
S + G + +DA T + + G SL
Sbjct: 286 NVSTDGSTV--WLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 4e-08
Identities = 44/337 (13%), Positives = 84/337 (24%), Gaps = 32/337 (9%)
Query: 313 SFGETS-FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF 371
F +T+ F P+T + + + P + N V S
Sbjct: 2 EFSQTALFPSLPRTA-------RGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLTDTE 52
Query: 372 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 431
I + SP G V+++ +
Sbjct: 53 I-------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93
Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
+ I G V D + + + A +
Sbjct: 94 LKT-TIPVFSGPVKD-ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151
Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551
I S S D + + + + + Y+ +G S G
Sbjct: 152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 211
Query: 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
+ G + SV + + +I +A D IKIW++ ++
Sbjct: 212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271
Query: 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
+ TI G + E+ ++ L I+ I
Sbjct: 272 VEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 9e-07
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 7/119 (5%)
Query: 838 TIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
+ P P TA L P + I S + S HS + T
Sbjct: 7 ALFPSLPRTARGTAVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVA 64
Query: 893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951
S + S + +WD ++ G + ++ +
Sbjct: 65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 852 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSGGDA 908
D IA D TI I+N + +V + ++ + G++++ LVS +
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK--QALVSISANG 303
Query: 909 QIFVWDVD 916
I + +
Sbjct: 304 FINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAW 514
+ + DKTIK+W+ T + + + SIS +G I
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.7 bits (124), Expect = 9e-08
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKEN 498
H + L+ SA K + + + I WD TG F + H + + +K +
Sbjct: 11 HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 499 IHFIFS 504
+ +
Sbjct: 69 LFTVSW 74
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 4e-05
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSG 905
T+L+ + D + + I ++ + + H+ +TG+ + L +
Sbjct: 16 TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS 73
Query: 906 GDAQIFVWDVDGWGIQTC 923
D + V G G+ +
Sbjct: 74 WDDHLKVVPAGGSGVDSS 91
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 1e-04
Identities = 12/69 (17%), Positives = 21/69 (30%)
Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936
+ GH+K +T L S L S+ + I WD+ + +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 937 PSETHIQFH 945
+ F
Sbjct: 63 TTSKGDLFT 71
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 851 FNPHDNNVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 908
DN +A G D++++++N S I H+ V +VS+G D+
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290
Query: 909 QIFVWDV 915
I W+V
Sbjct: 291 NIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.1 bits (94), Expect = 4e-04
Identities = 40/298 (13%), Positives = 80/298 (26%), Gaps = 20/298 (6%)
Query: 325 TVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL------------- 370
++ Q G + ++ L G WD+++G
Sbjct: 3 SIDQVR-YGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 371 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428
++ + L S V LG+A S A
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120
Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
A V + + A + G + ++G+ + P
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180
Query: 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548
N F+ + K+ + + ++ ++A +
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240
Query: 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
T S +V WN ++ + +SV+ V + I++AG D IK W+
Sbjct: 241 TGSLDNSVIV-WNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 2e-07
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----------GHGA 486
AH ++ ++ ++C D +KVWD + H
Sbjct: 11 KAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
V + + + S G + +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITR 98
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 4e-07
Identities = 43/393 (10%), Positives = 104/393 (26%), Gaps = 40/393 (10%)
Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC--------- 629
+ V ++ D +K+WD + D +
Sbjct: 15 ADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72
Query: 630 --FNKNGTLLAVIANENRIKILETPESNSVD-----AAGVLSDNLRKLSVNPISTVTGAG 682
L+A + + + +L +++K S +
Sbjct: 73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132
Query: 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742
V D K ++S ++ E Q + + + +
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192
Query: 743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP--RLYQPRHGPQFMVNDTTDSN 800
+ G + V + L + + + + PQ + +
Sbjct: 193 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252
Query: 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
+ ++ + S S + + L S SL+FN +
Sbjct: 253 NSFGCITLYETEFGERIGSLSVP------THSSQASLGEFAHSSWVMSLSFNDS-GETLC 305
Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRV----TGLVFSDALNILVSSGGDAQIFVWDVD 916
D + ++ ++ E I+ L H + L + + L G V+DV
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVK 359
Query: 917 GW--GIQTCRSLQTPDGVMTLAPSETHIQFHKD 947
G ++ + + + + I++ ++
Sbjct: 360 FLKKGWRSGMGADLNESLCCVCLDRS-IRWFRE 391
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 5e-06
Identities = 33/320 (10%), Positives = 88/320 (27%), Gaps = 48/320 (15%)
Query: 361 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420
+WD ++ + + V + + L+ +
Sbjct: 38 VWDNKLLDNENPKDKSYSHFV------HKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91
Query: 421 QLYAYHGGSDAR-------QQLEIDAHVGNVNDLAFSAPCKQIS---VITCGDDKTIKVW 470
Y + + L+ D + L + A ++ ++ T +W
Sbjct: 92 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 151
Query: 471 DA-VTGSRTYSFEGHGAPVYSLCPHAKENIH--------------FIFSISVDGKIKAWL 515
+ S + +P L + + I + +G ++
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 211
Query: 516 YDSLGARVDYD-----APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570
+L +++ R + L + + + G +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271
Query: 571 YQG----------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-- 618
+ V + F+ + + + +AG D ++ WD+ + +TT++
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331
Query: 619 GGGLPENPRICFNKNGTLLA 638
E + +++G LA
Sbjct: 332 DDIEIEEDILAVDEHGDSLA 351
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 9e-05
Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 4/188 (2%)
Query: 305 SLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV 364
E S + + ++ + S S+D L+ G N G + ++
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISEL 212
Query: 365 NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 424
++ + L+ + I + + + + G +
Sbjct: 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272
Query: 425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484
++ L AH V L+F+ + + + G D ++ WD T R + H
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETL--CSAGWDGKLRFWDVKTKERITTLNMH 330
Query: 485 GAPVYSLC 492
+
Sbjct: 331 CDDIEIEE 338
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.004
Identities = 48/456 (10%), Positives = 109/456 (23%), Gaps = 89/456 (19%)
Query: 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA 539
+ + H A ++S+ F S S DG +K W
Sbjct: 9 AGKAHDADIFSVSACNS----FTVSCSGDGYLKVW------------------------- 39
Query: 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGD 598
+ + E + + ++ + + + D + ++A
Sbjct: 40 ------------DNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87
Query: 599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRI-------------CFNKNGTLLAVIANENR 645
+ + + + + + + L +
Sbjct: 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT 147
Query: 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705
I + + L+ + + + SV ++E I+
Sbjct: 148 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL------IATG 201
Query: 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765
N + L S + + R + ++ A+A +
Sbjct: 202 FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 261
Query: 766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVI 825
+ VP Q G + + ++ + D G +
Sbjct: 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD--------GKL 313
Query: 826 SLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881
+ V T + I T+ LA + H +++ G+ D L
Sbjct: 314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL------------ 361
Query: 882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917
K + +D L D I + G
Sbjct: 362 ----KKGWRSGMGADLNESLCCVCLDRSIRWFREAG 393
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 33/340 (9%), Positives = 85/340 (25%), Gaps = 22/340 (6%)
Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654
+ D +++ ID G P +G+ +A A+ +I +
Sbjct: 23 HFAAVTQQFVIDGEAGRVIGMIDGGFL----PNPVVADDGSFIAH-ASTVFSRIARGERT 77
Query: 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714
+ V+ ++ P + G S+ D K + + S A V+
Sbjct: 78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDL 136
Query: 715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 774
A + + G
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196
Query: 775 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 834
+ T + + S + +L + +
Sbjct: 197 INHP------AYSQKAGRLVWPTYTGKIHQIDLS--SGDAKFLPAVEALTEAERADGWRP 248
Query: 835 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
+ + + +++ +A++ E ++K E + +
Sbjct: 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINV 307
Query: 895 S--DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 932
S + + S GD +++ D ++ L++ + +
Sbjct: 308 SQDEKPLLYALSTGDKTLYIHDA-----ESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 13/142 (9%)
Query: 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409
L+ T G D++SG F+ + + +V +
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA-------DGWRPGGWQQVAYHRALD 261
Query: 410 LLGVAYSKHIVQLYAYHGGS------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463
+ + + + ++L ++ + S K +
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321
Query: 464 DKTIKVWDAVTGSRTYSFEGHG 485
DKT+ + DA +G S G
Sbjct: 322 DKTLYIHDAESGEELRSVNQLG 343
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.5 bits (93), Expect = 8e-04
Identities = 32/323 (9%), Positives = 72/323 (22%), Gaps = 48/323 (14%)
Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTG---------LWDVNSGQKLFIRNFKVWDIG 381
I+G P + + T ++D +
Sbjct: 44 IDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102
Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
+ G ++ +SP ++ V +
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF------PT 156
Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501
+ G + T ++ F +
Sbjct: 157 APDTFFMHCRDGSLA-KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-------KAGR 208
Query: 502 IFSISVDGKIKAWLYDSLGARVDYDAPGLG------------CTRMAYSANGRRLF---- 545
+ + GKI S A+ L ++AY R++
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268
Query: 546 --SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF--DTAKDQILAAGDDHV 601
K F+V + G ++ + + ++ D + D
Sbjct: 269 QRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKT 324
Query: 602 IKIWDMNKVQLLTTIDAGGGLPE 624
+ I D + L +++ G P+
Sbjct: 325 LYIHDAESGEELRSVNQLGHGPQ 347
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 29/326 (8%), Positives = 77/326 (23%), Gaps = 39/326 (11%)
Query: 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398
+ P + LL WD + V+ +
Sbjct: 16 DIKIIPSKSLLL--------ITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHP 58
Query: 399 VNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+ + + + V + + G + +A++G + +
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
+ + + V + N + + +++ +
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 518 SLG--------------ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNE 562
R P S +GR + + + +
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238
Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
+ L NS+ F + AG D +I W++ + +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIE---FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-- 293
Query: 623 PENPRICFNKNGTLLAVIANENRIKI 648
E+ + + +L + +++ K
Sbjct: 294 -EDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 21/265 (7%), Positives = 55/265 (20%), Gaps = 14/265 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
++ + P SLL + + +Y + + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
+ + +KV + S ++ S ++
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-L 576
G + S S + + L
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR--------- 627
++ V ++ + D + + + +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 628 ----ICFNKNGTLLAVIANENRIKI 648
I F+ L ++ I
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 5e-06
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 19/129 (14%)
Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVND 446
+ + + + V + + D R L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 505
+ FS K + T G D I W+ T + +F + V + +
Sbjct: 257 IEFSPRHKFL--YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 506 SVDGKIKAW 514
+ D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE---GHSKRVTGLVFSDA 897
P + + P +++ I D ++ +Y L + + F D
Sbjct: 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 898 LNILVSSGGDAQIFVW 913
++ + G +
Sbjct: 68 TDLQIYVGTVQGEILK 83
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 6/62 (9%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMT 934
+++ + ++ + + ++L+ + D + V+ D + +SL+ ++
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 935 LA 936
Sbjct: 62 CN 63
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 35/355 (9%), Positives = 86/355 (24%), Gaps = 44/355 (12%)
Query: 298 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG 357
D+SP F S G+ D T + E + + GT G
Sbjct: 8 EDFSPLDG-DLIAFVSRGQAFIQDVSGTYVLKVPEPLR-IRYVRRGGDTKVAFIHGTREG 65
Query: 358 DT-GLWDVNSGQKL----------------------FIRNFKVWDIGACSMLFKTALVRD 394
D G++D +G+ + T + R
Sbjct: 66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125
Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFS 450
+ S + + + + Y + D + A N +D A +
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185
Query: 451 APCKQISVITCGDDKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIF 503
++ D V + + + +
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245
Query: 504 SISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562
++ ++ + P + + + L++++
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305
Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
+ N+++ + + ++ DD I + + K + T++
Sbjct: 306 KTRKVTEV-------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 17/159 (10%)
Query: 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-------- 389
++ F V ++ V + + D+ S
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 449
+ + + V + A K ++ Y ++ N+ DL
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDLRL 322
Query: 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
SA K + + DD I + + E P+
Sbjct: 323 SADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 38/394 (9%), Positives = 89/394 (22%), Gaps = 97/394 (24%)
Query: 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395
S + DF P+ L+ + G + DV+ L +
Sbjct: 4 SKFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPE--------------------- 41
Query: 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS----- 450
+ + V D + + ++ L Y + + + + ++GNV +
Sbjct: 42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKF 99
Query: 451 ---------------------------------------------APCKQISVITCGDDK 465
+ +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525
I V+D + + + P + ++ +S + L +
Sbjct: 160 AIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 216
Query: 526 DAPGLGCT-------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
+ + + R L+
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276
Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
SV A + V+ +D+ ++ + L + + +
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL------RLSADRKTVM 330
Query: 639 VIANENRIKI--LETPESNSVDAAGVLSDNLRKL 670
V ++ +I LE PE + + R L
Sbjct: 331 VRKDDGKIYTFPLEKPEDER-----TVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 851 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910
+ + +L Y+ ++ K+ +T L S ++ D +I
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338
Query: 911 FVWDVDG 917
+ + ++
Sbjct: 339 YTFPLEK 345
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (111), Expect = 8e-06
Identities = 28/231 (12%), Positives = 51/231 (22%), Gaps = 16/231 (6%)
Query: 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAP 452
G +V+ S G L V V + + EI
Sbjct: 61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-EPTTVAEIKIGSEARSIETSKMEGWE 119
Query: 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----------FI 502
K + + D T G H + + FI
Sbjct: 120 DKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178
Query: 503 FSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561
++ GKI Y L + + + R + ++ +
Sbjct: 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238
Query: 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612
AI+ T + VH + D + + +
Sbjct: 239 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 289
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (90), Expect = 0.003
Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 7/148 (4%)
Query: 841 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899
P T + N+ ++ D I + + + E+ + L+ V S +
Sbjct: 16 APEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR 74
Query: 900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T 957
L G D ++ + D+ T ++ ++ S + +
Sbjct: 75 YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS---KMEGWEDKYAIAGAYWPP 131
Query: 958 HLAIYEAEELTCLKQWFPISSVPISQAT 985
I + E L K Q
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEY 159
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.1 bits (108), Expect = 2e-05
Identities = 26/296 (8%), Positives = 54/296 (18%), Gaps = 66/296 (22%)
Query: 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392
+ LL V ++ +C +
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-----QLTKSASCFHIH----- 171
Query: 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 452
PG + + S SL + Q A N + A
Sbjct: 172 --PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229
Query: 453 CKQISVITCGDDKTIKVWD---AVTGSRTYSFEGHGAPVYSLCPHAKE---NIHFIFSIS 506
I +G + +F G + + +
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289
Query: 507 VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565
+ S+G + G + + +G
Sbjct: 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN-------------------- 329
Query: 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621
+ V+ I+D Q ++++ G
Sbjct: 330 ---------------------------YANSAGTEVLDIYDAASDQDQSSVELDKG 358
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.6 bits (104), Expect = 5e-05
Identities = 30/301 (9%), Positives = 60/301 (19%), Gaps = 51/301 (16%)
Query: 389 TALVRDPGVSVNRVVWSPDGSLLGVA----------YSKHIVQLYAYHGGSDARQQLEID 438
L G ++ V GS +A V+++ +I+
Sbjct: 57 VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIE 113
Query: 439 AH-------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
V+ + A + + S +
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH- 171
Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------APGLGCTRMAYS 538
P A + S + A + A A M
Sbjct: 172 -PGAA---ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227
Query: 539 ANGRRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQ--HNSVSVVHFDTAKDQI 593
A + G + + +E G Q+ + + T +
Sbjct: 228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287
Query: 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE--NRIKILE 650
+ Q I G I ++G + + I +
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPISNGHD----SDAIIAAQDGASDNYANSAGTEVLDIYD 343
Query: 651 T 651
Sbjct: 344 A 344
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.9 bits (97), Expect = 3e-04
Identities = 11/170 (6%), Positives = 36/170 (21%), Gaps = 19/170 (11%)
Query: 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL 391
+++ + G+ + + +M
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD---IPAAGATMKAAIDG 251
Query: 392 VRDPGVSVNR-------VVWSPDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEI 437
+ N V + + + +H Q
Sbjct: 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS--RSCLAAAENTSSVTASVGQTSGP 309
Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487
++ + + + + + + + ++DA + S E P
Sbjct: 310 ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.4 bits (101), Expect = 1e-04
Identities = 40/381 (10%), Positives = 93/381 (24%), Gaps = 47/381 (12%)
Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETPE 653
D I + D + +++ ID G + +G L VI + RI I +
Sbjct: 37 TLRDAGQIALVDGDSKKIVKVIDTGYA-VHI--SRMSASGRYLLVIGRDARIDMIDLWAK 93
Query: 654 SNSVDAAGVLSDNLRKLSVNPISTVTG-----AGIANGSVSVNEDPKEDVKPEISVEAEN 708
+ A + R + + ++ + + K +S
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153
Query: 709 KSEVEKPLFARP-----SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763
R S + + + K+ + Y + L
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG 213
Query: 764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV----------PCFALSKN 813
+ A + P ++ S
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273
Query: 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI------GMDDST 867
S G + +K + + + + +P +++ +
Sbjct: 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333
Query: 868 ILIYNARSSEVISK---------LEGHSKRVTGLVFS-DALNILVSSGGDA----QIFVW 913
+ +++ ++ + + L +KRV ++ + S + V
Sbjct: 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393
Query: 914 DVDG---WGIQTCRSLQTPDG 931
D + L TP G
Sbjct: 394 DDKTLKLKAVVKDPRLITPTG 414
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.9 bits (97), Expect = 3e-04
Identities = 21/212 (9%), Positives = 54/212 (25%), Gaps = 9/212 (4%)
Query: 841 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899
P + N+ ++ D I + + S +++ ++ V S +
Sbjct: 16 KPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR 74
Query: 900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-- 957
L+ G DA+I + D+ ++ ++ + + +
Sbjct: 75 YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE---SSKFKGYEDRYTIAGAYWPP 131
Query: 958 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH--EASNLEVQCR 1015
AI + E L + +Q + + I + + +
Sbjct: 132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191
Query: 1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1047
L T+ +
Sbjct: 192 YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.2 bits (92), Expect = 0.001
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474
+ + I + +A + K++ + T+ V D T
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV-YVALSFCNTVSVIDTAT 275
Query: 475 GSRTYSFEGHGAP 487
+ T + P
Sbjct: 276 NTITATMAVGKNP 288
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.9 bits (91), Expect = 0.001
Identities = 38/291 (13%), Positives = 77/291 (26%), Gaps = 16/291 (5%)
Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE-NRIKILETP 652
A + I + D+ ++ TI G NP + +GT + V N + I++T
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDT- 61
Query: 653 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712
A + + S V+ G ++ + + A
Sbjct: 62 ------ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115
Query: 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772
+ PL S L + +S + + D T
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT--PDGTKVY 173
Query: 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT 832
A + ++ +K +S+ T
Sbjct: 174 VANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233
Query: 833 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883
K I P P +A P V +T+ + + ++ + + +
Sbjct: 234 NKITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 38.7 bits (88), Expect = 0.003
Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 6/179 (3%)
Query: 454 KQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 511
KQ I + + I VW+ V + + + + + ++
Sbjct: 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRV 61
Query: 512 KAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568
A+ A T ++ G+ +F + S + +
Sbjct: 62 LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121
Query: 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
+GL H++ T L + + D + + PR
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1092 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.9 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.82 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.62 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.59 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.56 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.55 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.52 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.25 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.23 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.2 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.11 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.1 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.98 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.96 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.96 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.91 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.89 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.88 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.88 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.86 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.79 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.76 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.56 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.53 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.3 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.22 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.19 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.9 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.89 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.88 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.85 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.82 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.77 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.76 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.75 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.71 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.7 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.68 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.68 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.65 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.65 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.6 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.57 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.52 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.48 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.41 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.39 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.07 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.92 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.14 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.81 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.34 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.63 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.28 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.84 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.31 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 90.91 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 90.27 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.5 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 88.97 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 88.17 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 82.84 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-36 Score=332.24 Aligned_cols=293 Identities=13% Similarity=0.172 Sum_probs=251.5
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+.+| +|++.|+|++|||+|+ +||+|+ ||.|+|||+.++..... +......+|...|.+++|
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~ 105 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred eEEEEC-CCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEE
Confidence 344555 8999999999999998 689987 79999999987654421 112225679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+|||++|++|+.|+.|++||+..... .....+..|...|.+++|+|++. ++++++.|+.|++||+.+++......+|
T Consensus 106 s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 182 (337)
T d1gxra_ 106 LPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred cCCCCEEEEeeccccccccccccccc-ccccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 99999999999999999999986543 22336778999999999999999 8999999999999999999999999999
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
...|.+++|++ ++..+++++.||.+++||+++.+....+. +...|.+++|+|+++++++++. ++.+++||..+
T Consensus 183 ~~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~ 255 (337)
T d1gxra_ 183 TDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNK 255 (337)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS
T ss_pred ccccccccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----ccccccccccc
Confidence 99999999954 66899999999999999999887665554 5678999999999999999886 56699999998
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
++... ...|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+... ..|.+++|+|++++|++++.||
T Consensus 256 ~~~~~-~~~~~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~ 328 (337)
T d1gxra_ 256 PDKYQ-LHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp SCEEE-ECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTS
T ss_pred ccccc-ccccc---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCC
Confidence 88753 34444 78999999999999999999999999999999998887643 4589999999999999999999
Q ss_pred eEEEEEC
Q 001363 645 RIKILET 651 (1092)
Q Consensus 645 ~i~iw~~ 651 (1092)
+|+|||+
T Consensus 329 ~I~vWdl 335 (337)
T d1gxra_ 329 KATVYEV 335 (337)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 9999986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.3e-36 Score=325.25 Aligned_cols=288 Identities=21% Similarity=0.359 Sum_probs=263.6
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
..+|+||++.|++++|+|+++ +||||+.||+|+|||+.+++.+.. +.+|...|.+++|+|
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~ 69 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDH 69 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECT
T ss_pred cEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeec
Confidence 467999999999999999998 799999999999999999988865 678999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
++.++++++.++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++||+.+++.+..+.+|..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 144 (317)
T d1vyhc1 70 SGKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHRE 144 (317)
T ss_dssp TSSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cccccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCC
Confidence 99999999999999999998865443 4668999999999999999 799999999999999999999999999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC--------------------CEEEE
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--------------------RRLFS 546 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg--------------------~~l~~ 546 (1092)
.+.++++++ ++.+|++++.||.|++|++........+..+...+.++.++|++ ..+++
T Consensus 145 ~~~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (317)
T d1vyhc1 145 WVRMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222 (317)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred cceeeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence 999999854 67899999999999999999999999999999999999998764 35666
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
++. ++.|++||..+++.+..+.+|. ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..|. ..|.
T Consensus 223 ~~~----d~~i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~--~~V~ 293 (317)
T d1vyhc1 223 GSR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVT 293 (317)
T ss_dssp EET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEE
T ss_pred ccC----CCEEEEEECCCCcEEEEEeCCC---CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC--CCEE
Confidence 664 6779999999999999999988 899999999999999999999999999999999999998764 4699
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEE
Q 001363 627 RICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
+++|+|++++|++++.||+|++||
T Consensus 294 ~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 294 SLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.1e-35 Score=318.33 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=247.7
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.+++.+.+++++|+|+. ||.++ ++.|.+||+.+++.... +.+|...|++++|+|||++|
T Consensus 15 ~~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~l 73 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC 73 (311)
T ss_dssp CCTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred CCCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeE
Confidence 34456788999999995 56654 56799999998877654 67899999999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC--CCcEEEEECCCCceeEEEecCCcCeE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
|+|+.||+|+|||+.++..... ..+.+|.++|.+++|+|+++ ++++++. +..++||++++++....+.+|...|+
T Consensus 74 atg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~ 150 (311)
T d1nr0a1 74 ASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN 150 (311)
T ss_dssp EEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred eccccCceEeeeeeeccccccc-cccccccCcccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998765432 35778999999999999999 6777764 56799999999999999999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
+++|+++.+ ..|++|+.||.|++||+++.+.......+...|.+++++|+++++++++. ++.|++||..++....
T Consensus 151 ~v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~ 225 (311)
T d1nr0a1 151 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 225 (311)
T ss_dssp EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred cccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----cccccccccccccccc
Confidence 999976432 36889999999999999999888899999999999999999999999886 5669999999998887
Q ss_pred EEeecc----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001363 570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1092)
Q Consensus 570 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1092)
.+.... .|...|.+++|+|++++|++|+.||+|+|||+++++++.++..+... ....+.+.+++..+++++.||.
T Consensus 226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred cccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence 765432 13478999999999999999999999999999999999998766432 2334556667778999999999
Q ss_pred EEEEECC
Q 001363 646 IKILETP 652 (1092)
Q Consensus 646 i~iw~~~ 652 (1092)
|++||.+
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999964
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.7e-34 Score=313.45 Aligned_cols=315 Identities=20% Similarity=0.302 Sum_probs=265.0
Q ss_pred EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
.|.. .....++++||.++|++++|+| ++.+|++|+.||+|++||+.+++....+..|...|.+++++|++.+++++.
T Consensus 2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~ 78 (317)
T d1vyhc1 2 EWIP-RPPEKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78 (317)
T ss_dssp CCCC-CSSCSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ccCC-CCCccEEEcCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence 3543 3445678999999999999965 668999999999999999999999999999999999999999999999987
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
. +..+..|+....+....+.++. ..+.++.++|+++.+++++.|+.+++||+.+++.+..+..+. ..+.++
T Consensus 79 ~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 149 (317)
T d1vyhc1 79 A----DMTIKLWDFQGFECIRTMHGHD---HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMV 149 (317)
T ss_dssp T----TSCCCEEETTSSCEEECCCCCS---SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEE
T ss_pred c----cccccccccccccccccccccc---ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC--Ccceee
Confidence 6 4558899999888888888777 889999999999999999999999999999999999888664 458899
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccc
Q 001363 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1092)
+|+|+++++++++.|+.+++|+..++.....+..+...+.++.+.
T Consensus 150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------------------------- 194 (317)
T d1vyhc1 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA----------------------------------- 194 (317)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-----------------------------------
T ss_pred ecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEe-----------------------------------
Confidence 999999999999999999999999887777666555555444444
Q ss_pred ccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCC
Q 001363 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 788 (1092)
Q Consensus 709 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g 788 (1092)
|++......
T Consensus 195 -----------------------------------~~~~~~~~~------------------------------------ 203 (317)
T d1vyhc1 195 -----------------------------------PESSYSSIS------------------------------------ 203 (317)
T ss_dssp -----------------------------------CSCGGGGGG------------------------------------
T ss_pred -----------------------------------eccccceee------------------------------------
Confidence 333211000
Q ss_pred CceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 001363 789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST 867 (1092)
Q Consensus 789 ~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~ 867 (1092)
............++.++++++ |+.|++||+.+++.+.++.+|...|.+++|+| ++++|++|+.||.
T Consensus 204 ------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~ 270 (317)
T d1vyhc1 204 ------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKT 270 (317)
T ss_dssp ------------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTE
T ss_pred ------------ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCe
Confidence 001111223344667777777 79999999999999999999999999999999 8999999999999
Q ss_pred EEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 868 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 868 v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd 914 (1092)
|++||+.+++++..+.+|.++|++++|+|++++|+|++.||+|+|||
T Consensus 271 i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-34 Score=313.46 Aligned_cols=283 Identities=13% Similarity=0.188 Sum_probs=242.7
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccce--EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ--LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~--~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+|...|.+++|||+|++||+|+ ||.|+|||+.++...... ....+|.+.|.+++|+||++ +|++|+.|+.|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeeccccccccc
Confidence 6999999999999999999987 789999999876544332 23457999999999999999 899999999999999
Q ss_pred CCC--CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001363 472 AVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
+.. ++....+..|...+..+++++ ++.++++++.|+.|++|++.+.+.......+...+.+++|++++..+++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~ 203 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 874 456678889999999999854 6789999999999999999999888888889999999999999999999876
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
++.+++||+++++.+..+. +. ..|.+++|+|+++++++++.|+.+++||+.+++..... .+...|.+++
T Consensus 204 ----d~~v~i~d~~~~~~~~~~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~ 272 (337)
T d1gxra_ 204 ----DNTVRSWDLREGRQLQQHD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLK 272 (337)
T ss_dssp ----TSEEEEEETTTTEEEEEEE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEE
T ss_pred ----cccccccccccceeecccc-cc---cceEEEEEcccccccceecccccccccccccccccccc---ccccccceEE
Confidence 6679999999999887765 33 78999999999999999999999999999988876443 2345689999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccc
Q 001363 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 709 (1092)
|+|++++|++++.||.|++||..+++.+....
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------------------------------------------ 304 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------------------------------------------ 304 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------------------------------------------------
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc------------------------------------------------
Confidence 99999999999999999999998775543321
Q ss_pred cceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001363 710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 710 i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~ 763 (1092)
|...|.+++|+|++++|++++.||.|++|++
T Consensus 305 -----------------------~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 305 -----------------------ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -----------------------CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -----------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 4556778888888888888888888888875
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.1e-34 Score=321.44 Aligned_cols=303 Identities=15% Similarity=0.234 Sum_probs=240.8
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
.+|++.|+||+|||||+ +||+|+ |++|+|||+.+++.+......... .............+|...|.+++|+|+|++
T Consensus 59 ~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp EECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSE
T ss_pred CCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEECCCCCc
Confidence 37999999999999998 689987 899999999999887653221000 000111222235578899999999999999
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
|++|+.||.|++||...++.+. .+.+|...|.+++|++++. .+++++.++.+++||..+.........+...+ +
T Consensus 136 l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~ 209 (388)
T d1erja_ 136 LATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-T 209 (388)
T ss_dssp EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSSCEE-E
T ss_pred ceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeeccccccccccccccccc-c
Confidence 9999999999999999886554 6788999999999999999 79999999999999999998888777555544 4
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
+.+.+ .++.+|++++.||.|++||..+......+ ..|...|.+++|+|++++|++++. ++.|++||+.
T Consensus 210 ~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~iwd~~ 284 (388)
T d1erja_ 210 VAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQ 284 (388)
T ss_dssp EEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC-
T ss_pred ccccC-CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEEEEecc
Confidence 45543 46789999999999999999987765543 345678999999999999999986 6679999997
Q ss_pred CCeEE------------EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE-
Q 001363 564 EGAIK------------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF- 630 (1092)
Q Consensus 564 ~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~- 630 (1092)
++... .....|. ..|.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .|.++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~~~~ 359 (388)
T d1erja_ 285 NANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVA 359 (388)
T ss_dssp --------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEC
T ss_pred CCccccccccccccceeeeccccc---ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEEEEe
Confidence 66543 2333334 7899999999999999999999999999999999999987643 5777764
Q ss_pred -----ccCCCEEEEEeCCCeEEEEECC
Q 001363 631 -----NKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 631 -----s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
+|++++|++|+.||+|+||+++
T Consensus 360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 360 NGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 6789999999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.3e-33 Score=310.06 Aligned_cols=295 Identities=19% Similarity=0.266 Sum_probs=258.8
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
....++|+||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+.. +.+|...|.+++
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~ 104 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeE
Confidence 356789999999999999999998 799999999999999999987765 667999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
|+|+++++++|+.|+.+.+|+....... .....+.+|...........+. .+.....|.....|+...........
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (340)
T d1tbga_ 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred eeccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccc
Confidence 9999999999999999999998765443 2334567788877776666654 58888889999999998888888888
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
.+...+....+.+ .+.++++++.|+.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||.
T Consensus 182 ~~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~ 255 (340)
T d1tbga_ 182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred ccceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEee
Confidence 8888888887754 5579999999999999999999999999999999999999999999999986 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
........+.... +...+.+++|+|++++|++|+.||.|++||+.+++.+..+..|. ..|.+++|+|++++|++|+.
T Consensus 256 ~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~--~~V~~l~~s~d~~~l~s~s~ 332 (340)
T d1tbga_ 256 RADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp TTTEEEEEECCTT-CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEET
T ss_pred ccccccccccccc-ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEcc
Confidence 9998877765433 34679999999999999999999999999999999999998764 46999999999999999999
Q ss_pred CCeEEEEE
Q 001363 643 ENRIKILE 650 (1092)
Q Consensus 643 dg~i~iw~ 650 (1092)
||.|++||
T Consensus 333 Dg~v~iWd 340 (340)
T d1tbga_ 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CCEEEEeC
Confidence 99999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-33 Score=318.50 Aligned_cols=325 Identities=14% Similarity=0.165 Sum_probs=258.1
Q ss_pred EEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc
Q 001363 352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 431 (1092)
Q Consensus 352 sg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~ 431 (1092)
.+..++...+|+....+..... +.. ..+|.+.|+|++|||||++||+|+ |++|+|||+.+++.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~-------------l~~--~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~ 96 (388)
T d1erja_ 33 KKQTNDYYILYNPALPREIDVE-------------LHK--SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV 96 (388)
T ss_dssp EEECSSCEEEECTTSCCCEEEE-------------EEE--EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE
T ss_pred ccCCCCcEEEeCCCCCcceeee-------------eEe--eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceE
Confidence 4456677889987765544320 111 236999999999999999999986 889999999988654
Q ss_pred cce---------------EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeeccc
Q 001363 432 RQQ---------------LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496 (1092)
Q Consensus 432 ~~~---------------~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~ 496 (1092)
... ....+|...|++++|+|+++ +|++|+.||.|++||..+++.+..+.+|...|.++++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~- 173 (388)
T d1erja_ 97 ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP- 173 (388)
T ss_dssp EEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-
T ss_pred eeecccccccccccccccccccCCCCCEEEEEECCCCC--cceeccccccccccccccccccccccccccccccccccc-
Confidence 321 12235777899999999999 899999999999999999999999999999999999965
Q ss_pred CCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc-
Q 001363 497 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ- 575 (1092)
Q Consensus 497 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~- 575 (1092)
++..+++++.++.+++||..+.........+...+....+.+++++|++++. ++.|++||..++.....+....
T Consensus 174 -~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~ 248 (388)
T d1erja_ 174 -SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENE 248 (388)
T ss_dssp -TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC----
T ss_pred -ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC----CCeEEEeecccCccceeeccccc
Confidence 6679999999999999999988777766666655555555568899999876 5569999999998877654321
Q ss_pred ---ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe----------CCCCCCCCceEEEccCCCEEEEEeC
Q 001363 576 ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID----------AGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 576 ---~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~----------~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.|...|.+++|+|++++|++++.||.|++||+.++....... ...+...|.+++|+|++++|++|+.
T Consensus 249 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 328 (388)
T d1erja_ 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328 (388)
T ss_dssp --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence 234789999999999999999999999999998755432211 1123356899999999999999999
Q ss_pred CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 643 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 643 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
||.|++||+.+++.+..+.+|...|.++++.+.... +|+++++++++.|++|++|++.
T Consensus 329 dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~----------------spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL----------------GPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT----------------CTTCEEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCccc----------------CCCCCEEEEEeCCCEEEEEeee
Confidence 999999999999999999999999999988643221 6899999999999999999975
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-33 Score=305.14 Aligned_cols=294 Identities=13% Similarity=0.147 Sum_probs=230.8
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+.++++||++.|++++|+|||+ +||+|+.||+|+|||+++++.+.. +..+|...|.+++|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~ 63 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKT 63 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEE
T ss_pred ccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEe
Confidence 46789999999999999999998 689999999999999999987753 13469999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+|+|+++ +++.|+.+++|+...............|...+.+++|+++++ +++++ .++.+++|+.. +..... .
T Consensus 64 ~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~-~~~~i~~~~~~--~~~~~~--~ 135 (299)
T d1nr0a2 64 TSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAA-CYKHIAIYSHG--KLTEVP--I 135 (299)
T ss_dssp CTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEE-ESSEEEEEETT--EEEEEE--C
T ss_pred eccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--ccccc-ccccccccccc--cccccc--c
Confidence 9999765 556788999999876543322223446778899999999998 45544 46789999843 222222 3
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
...+.++++++ ++.++++++.||.|++||+++..... ....+...|.+++|+|+++++++++. ++.|++||..
T Consensus 136 ~~~~~~~~~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~ 209 (299)
T d1nr0a2 136 SYNSSCVALSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVA 209 (299)
T ss_dssp SSCEEEEEECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGG
T ss_pred ccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccc
Confidence 44577788854 67899999999999999998766543 44567789999999999999999876 5569999998
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCC-CCCceEEEccCCCEEEEEeC
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~ 642 (1092)
++...........|...|.+++|+|+++++++|+.||.|++||++++..........+. ..+.++ +++++++|++++.
T Consensus 210 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~ 288 (299)
T d1nr0a2 210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQ 288 (299)
T ss_dssp GTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEET
T ss_pred ccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeC
Confidence 88766554443334489999999999999999999999999999987655444333332 334444 5566789999999
Q ss_pred CCeEEEEECC
Q 001363 643 ENRIKILETP 652 (1092)
Q Consensus 643 dg~i~iw~~~ 652 (1092)
|+.|++||+.
T Consensus 289 D~~i~iWdl~ 298 (299)
T d1nr0a2 289 DSNIKFWNVP 298 (299)
T ss_dssp TSCEEEEECC
T ss_pred CCEEEEEecc
Confidence 9999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.6e-33 Score=307.07 Aligned_cols=347 Identities=15% Similarity=0.187 Sum_probs=255.9
Q ss_pred eeeecccCCCCc-eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 326 VAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 326 ~~~~l~~h~~~V-~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
...+|+||++.| +|++| ||+ +||+|+.||+|+|||+.+++.+.+ +.+|.++|.+++|
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~l~~ 61 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKY 61 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred CcEEECCcCCCcEEEEEE--CCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EECCCCCEEEEEE
Confidence 357899999886 56555 577 699999999999999999988765 7789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+|+ .+|++|+.|++|++|+....+..... ....+...+....+++++. .+++++.|+.|++||+.++..+......
T Consensus 62 s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~~~~~~ 137 (355)
T d1nexb2 62 AHG-GILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE 137 (355)
T ss_dssp ETT-TEEEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC----------
T ss_pred cCC-CEEEEEeccccccccccccccccccc-ccccccccccccccccccc--eeeeecCCCcEEEEEccCCceecccccc
Confidence 986 58999999999999999987644322 1223444566778888888 8999999999999999988766544322
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
..... ....+......+. ....+...+ ..+.++++.++.+.. ++.+++||..+
T Consensus 138 ~~~~~-~~~~~~~~~~~~~--------------------~~~~~~~~v--~~~~~~~~~~~~~~~----d~~i~~~d~~~ 190 (355)
T d1nexb2 138 HDYPL-VFHTPEENPYFVG--------------------VLRGHMASV--RTVSGHGNIVVSGSY----DNTLIVWDVAQ 190 (355)
T ss_dssp -CCCE-EESCTTTCTTEEE--------------------EEECCSSCE--EEEEEETTEEEEEET----TSCEEEEETTT
T ss_pred ceecc-ceeccccccceee--------------------eeeeccccc--cccccccceeeeecc----cceeeeeeccc
Confidence 22111 1111111111111 111122222 345677888888876 55699999999
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
++.+....++. ..+.++.++|++..+++++.|+.|++||..++..+..+..|. ..|.+++++ ++++++++.||
T Consensus 191 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~~~~~dg 263 (355)
T d1nexb2 191 MKCLYILSGHT---DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT--ALVGLLRLS--DKFLVSAAADG 263 (355)
T ss_dssp TEEEEEECCCS---SCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCCCEEEEC--SSEEEEECTTS
T ss_pred ccceeeeeccc---cccccccccccceeeecccccceEEeeecccccccccccccc--ccccccccc--cceeeeeeccc
Confidence 99998888777 789999999999999999999999999999999999988664 468888886 57899999999
Q ss_pred eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001363 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~ 724 (1092)
.|++||+.+......
T Consensus 264 ~i~iwd~~~~~~~~~----------------------------------------------------------------- 278 (355)
T d1nexb2 264 SIRGWDANDYSRKFS----------------------------------------------------------------- 278 (355)
T ss_dssp EEEEEETTTCCEEEE-----------------------------------------------------------------
T ss_pred ccccccccccceecc-----------------------------------------------------------------
Confidence 999999765321100
Q ss_pred ccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001363 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 804 (1092)
+. +...
T Consensus 279 -----------------~~---------------------------------------------------------~~~~ 284 (355)
T d1nexb2 279 -----------------YH---------------------------------------------------------HTNL 284 (355)
T ss_dssp -----------------EE---------------------------------------------------------CTTC
T ss_pred -----------------cc---------------------------------------------------------cCCc
Confidence 00 0111
Q ss_pred eeEEEEecCCCEEEEEeCCeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 001363 805 VPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 873 (1092)
....+++++++++++++|+.|++||+++++++. .+.+|...|.+++|+| + .++++++.||+++||.+
T Consensus 285 ~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~-~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 285 SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-K-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET-T-EEEEEEESSSCEEEEEE
T ss_pred eEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcC-C-eEEEEEECCCcEEEEEE
Confidence 112356788899999999999999999999885 4677889999999998 5 58888999999777644
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.4e-33 Score=307.15 Aligned_cols=346 Identities=14% Similarity=0.181 Sum_probs=267.1
Q ss_pred eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001363 522 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1092)
Q Consensus 522 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1092)
+.++.+|...|.. ++++++++|++|+. ++.|++||..+++.+..+.+|. +.|.+++|+|+ +++++|+.|++
T Consensus 5 ~~tL~GH~~~vit-c~~~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~s~~-~~l~s~s~D~~ 75 (355)
T d1nexb2 5 RTTLRGHMTSVIT-CLQFEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHG-GILVSGSTDRT 75 (355)
T ss_dssp EEEEECCSSSCEE-EEEEETTEEEEEET----TTEEEEEETTTTEEEEEEECCS---SCEEEEEEETT-TEEEEEETTCC
T ss_pred cEEECCcCCCcEE-EEEECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCC---CCEEEEEEcCC-CEEEEEecccc
Confidence 4467788877633 35567899999986 6779999999999999999988 89999999986 58999999999
Q ss_pred EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccc
Q 001363 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1092)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (1092)
|++|+....+..................+++++.++++++.|+.|++|++.+..............
T Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-------------- 141 (355)
T d1nexb2 76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-------------- 141 (355)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC--------------
T ss_pred cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec--------------
Confidence 999999999888877666554445667788999999999999999999988654332211000000
Q ss_pred cccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCc-EEEEeecCCeeEE
Q 001363 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLM 760 (1092)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~~ 760 (1092)
.....+... .++....
T Consensus 142 ---------------------------------------------------------~~~~~~~~~~~~~~~~~------ 158 (355)
T d1nexb2 142 ---------------------------------------------------------LVFHTPEENPYFVGVLR------ 158 (355)
T ss_dssp ---------------------------------------------------------EEESCTTTCTTEEEEEE------
T ss_pred ---------------------------------------------------------cceeccccccceeeeee------
Confidence 000000000 0000000
Q ss_pred EeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEe
Q 001363 761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI 839 (1092)
Q Consensus 761 w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~ 839 (1092)
.|...+ ..+.+++++++++. |+.+++||+.+++.+...
T Consensus 159 ---------------------------------------~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 197 (355)
T d1nexb2 159 ---------------------------------------GHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 197 (355)
T ss_dssp ---------------------------------------CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ---------------------------------------eccccc--cccccccceeeeecccceeeeeecccccceeee
Confidence 133333 34566788888887 799999999999999999
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001363 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 919 (1092)
.++...+.++.++| ++.++++++.||.|++||+.++..+..+.+|...|.+++|+ +++|++++.||.|++||+.+..
T Consensus 198 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 198 SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp CCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC
T ss_pred eccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccc
Confidence 99999999999999 89999999999999999999999999999999999999996 4699999999999999999865
Q ss_pred eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC
Q 001363 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D 999 (1092)
... ...... .....++++++.+++++.|++|++||+++++++.....+|...|.+++|+|+ .++++++.|
T Consensus 275 ~~~----~~~~~~-----~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~d 344 (355)
T d1nexb2 275 RKF----SYHHTN-----LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKD 344 (355)
T ss_dssp EEE----EEECTT-----CCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESS
T ss_pred eec----ccccCC-----ceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECC
Confidence 321 111111 1233467899999999999999999999999988777889999999999987 478889999
Q ss_pred CcEEEEEc
Q 001363 1000 GTLSIHEA 1007 (1092)
Q Consensus 1000 g~i~vwd~ 1007 (1092)
|.++||.+
T Consensus 345 g~~~l~~~ 352 (355)
T d1nexb2 345 GQSFLEIL 352 (355)
T ss_dssp SCEEEEEE
T ss_pred CcEEEEEE
Confidence 99777654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-32 Score=298.89 Aligned_cols=286 Identities=11% Similarity=0.100 Sum_probs=230.1
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
....++++|+|+.|+.+. ++.+.+|++.+......+.+
T Consensus 19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~----------------------------------------- 56 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE----------------------------------------- 56 (311)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC-----------------------------------------
T ss_pred CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcC-----------------------------------------
Confidence 345789999999999886 56799999987644443332
Q ss_pred eccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccc
Q 001363 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1092)
Q Consensus 704 ~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 783 (1092)
|...|.+++|+|+|++|++++.||.|++|++.....
T Consensus 57 -----------------------------H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~--------------- 92 (311)
T d1nr0a1 57 -----------------------------HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH--------------- 92 (311)
T ss_dssp -----------------------------CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---------------
T ss_pred -----------------------------CCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc---------------
Confidence 666788888889999899999999999988754321
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-EE
Q 001363 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VI 859 (1092)
Q Consensus 784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~l 859 (1092)
.....+. .|...|.+++|+|++++++++++ ..+++|++++++...++.+|...|++++|+| +++ +|
T Consensus 93 -------~~~~~~~--~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l 162 (311)
T d1nr0a1 93 -------ILKTTIP--VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRI 162 (311)
T ss_dssp -------CEEEEEE--CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEE
T ss_pred -------ccccccc--cccCccccccccccccccccccccccccccccccccccccccccccccccccccccc-cceeee
Confidence 1111122 38889999999999999999874 4599999999999999999999999999999 555 58
Q ss_pred EEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeee--ecCCCCcCCCC
Q 001363 860 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL--QTPDGVMTLAP 937 (1092)
Q Consensus 860 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~ 937 (1092)
++|+.||.|++||+++++....+.+|..+|++++|+|++++|++++.|+.|++||+..++....... ....+|. .
T Consensus 163 ~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~---~ 239 (311)
T d1nr0a1 163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS---G 239 (311)
T ss_dssp EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS---S
T ss_pred cccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccc---c
Confidence 8999999999999999999999999999999999999999999999999999999998764332111 1112333 4
Q ss_pred CceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 938 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
.|.+++|+|++++|++ +.|+.|+|||+.+++++..+...+......+.+.+++.+|++++.||.|++||.+
T Consensus 240 ~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 240 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 7999999999999999 5789999999999999887654433333344555667789999999999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.9e-33 Score=311.24 Aligned_cols=264 Identities=12% Similarity=0.060 Sum_probs=209.6
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
.++|+|++|||||+ +||+|+.|+.|+|||+++++..... .+.+|.++|.+++|+|++++|++
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEEE-----------------EecCCCCCEEEEEECCCCCEEEE
Confidence 35899999999998 6899999999999999887644321 26789999999999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee----EEEecCCcCeE
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPVY 489 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~v~ 489 (1092)
|+.|++|+|||+.++.... ...+.+|...|.+++|+|+++ .|++++.|++|++|+++..... .....|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeeccccccc-ccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 9999999999998765332 335678999999999999999 8999999999999998776543 33456889999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
+++|+| ++.+|++|+.||+|++|+............. +.+ .+...++...
T Consensus 146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~----------~~~------------------~~~~~~~~~~ 195 (371)
T d1k8kc_ 146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT----------PWG------------------SKMPFGELMF 195 (371)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCB----------TTB------------------SCCCTTCEEE
T ss_pred cccccc--cccceeccccCcEEEEEeeccCccccccccc----------ccc------------------ccccceeeee
Confidence 999965 6789999999999999998754322111100 000 0112234444
Q ss_pred EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001363 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1092)
...+|. ..|.+++|+|+++++++++.|+.|++||+.++..+..+..+. ..|.+++|+|+++++++|+ |+.+++|
T Consensus 196 ~~~~~~---~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~s~~fs~d~~~la~g~-d~~~~~~ 269 (371)
T d1k8kc_ 196 ESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAGH-DCFPVLF 269 (371)
T ss_dssp ECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEET-TSSCEEE
T ss_pred eccCcc---CcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc--ccceeeeecCCCCEEEEEc-CCceEEE
Confidence 555555 889999999999999999999999999999999999988664 4689999999998887655 6777776
Q ss_pred ECCCC
Q 001363 650 ETPES 654 (1092)
Q Consensus 650 ~~~~~ 654 (1092)
.....
T Consensus 270 ~~~~~ 274 (371)
T d1k8kc_ 270 TYDSA 274 (371)
T ss_dssp EEETT
T ss_pred EeeCC
Confidence 65543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.9e-32 Score=297.53 Aligned_cols=286 Identities=14% Similarity=0.183 Sum_probs=257.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
|.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.+++|+
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence 88999999999999999999999999999999999986554 6788999999999999999 899999999999999
Q ss_pred CCCC----ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 472 ~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
.... .....+.+|........... +..+.....+.....+.................+....+.+.+.+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 7654 34566777877776655432 3578889999999999988887777778888889999999999999998
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
.. ++.|++||..+++.+..+.+|. ..|.+++|+|+++++++|+.||.|++||+........+........+.+
T Consensus 203 ~~----d~~v~i~d~~~~~~~~~~~~h~---~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (340)
T d1tbga_ 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TTEEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred ec----CceEEEEECCCCcEEEEEeCCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence 76 6679999999999999999887 8999999999999999999999999999999999888877666677899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ |+++++++++.|
T Consensus 276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s----------------------~d~~~l~s~s~D 333 (340)
T d1tbga_ 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD 333 (340)
T ss_dssp EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe----------------------CCCCEEEEEccC
Confidence 9999999999999999999999999999999999999999999996 788999999999
Q ss_pred cccceec
Q 001363 708 NKSEVEK 714 (1092)
Q Consensus 708 ~~i~lw~ 714 (1092)
|.|++||
T Consensus 334 g~v~iWd 340 (340)
T d1tbga_ 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-31 Score=290.01 Aligned_cols=330 Identities=16% Similarity=0.225 Sum_probs=262.2
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
...++|+||++.|.+ +++++|+ +||||+.||+|+|||+.+++.+.+ +.+|...|.+++|
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~ 65 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQM 65 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEE
T ss_pred CcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEEe
Confidence 455789999999975 4777888 689999999999999999998865 7789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+|+ +|++|+.|+.+++|+........ ....+...+....+.+ . .++.+..|+.+.+|+..+++....+..+
T Consensus 66 ~~~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 136 (342)
T d2ovrb2 66 RDN--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGH 136 (342)
T ss_dssp ETT--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred CCC--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeecc
Confidence 975 99999999999999998764332 3444555565555443 3 5788899999999999999988887766
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
......... ....+++++.|+.|++||.........+..+...+. .+++++.++++++. ++.|++||..+
T Consensus 137 ~~~~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~----dg~i~~~d~~~ 206 (342)
T d2ovrb2 137 VAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSL----DTSIRVWDVET 206 (342)
T ss_dssp SSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEET----TSCEEEEETTT
T ss_pred cccceeecc----ccceeeeecCCCeEEEeecccceeeEEEcCcccccc--cccCCCCEEEEEeC----CCeEEEeeccc
Confidence 555444332 345789999999999999998888888877766554 45568899999986 56699999999
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
++.+..+.+|. ..+.++.+++ +++++++.|+.|++||....+....+..+.. ......++.++++++++++.||
T Consensus 207 ~~~~~~~~~~~---~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~s~Dg 280 (342)
T d2ovrb2 207 GNCIHTLTGHQ---SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDDG 280 (342)
T ss_dssp CCEEEEECCCC---SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECSSEEEEEETTS
T ss_pred ceeeeEecccc---cceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccce-eeeceeecccCCCeeEEEcCCC
Confidence 99999998887 7888877765 6899999999999999999988888765432 1233445556678999999999
Q ss_pred eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001363 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~ 724 (1092)
.|++||+.+++.+..+...
T Consensus 281 ~i~iwd~~tg~~i~~~~~~------------------------------------------------------------- 299 (342)
T d2ovrb2 281 TVKLWDLKTGEFIRNLVTL------------------------------------------------------------- 299 (342)
T ss_dssp EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred EEEEEECCCCCEEEEEecc-------------------------------------------------------------
Confidence 9999999988776554311
Q ss_pred ccccCCccccccEEEEEEecCCcEEEEeecCCe----eEEEeecC
Q 001363 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR 765 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----i~~w~~~~ 765 (1092)
...+|...|.+++|+|++..+++++.||+ +++||++.
T Consensus 300 ----~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 300 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ----cCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 01126677899999999998899888885 88888754
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.3e-31 Score=284.05 Aligned_cols=293 Identities=12% Similarity=0.101 Sum_probs=225.9
Q ss_pred CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCcee
Q 001363 610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1092)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 689 (1092)
|+..+.+.+| ...|.+++|+|++++|++|+.||.|++||+.+++....+.
T Consensus 2 g~~~~~~~GH--~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~---------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP---------------------------- 51 (299)
T ss_dssp TEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS----------------------------
T ss_pred CccceEcCCC--CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc----------------------------
Confidence 4566777766 4579999999999999999999999999998876554332
Q ss_pred ecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcC
Q 001363 690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 769 (1092)
Q Consensus 690 ~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~ 769 (1092)
..|...|.+++|+|+++ +++++.|+.+++|+.......
T Consensus 52 -----------------------------------------~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~ 89 (299)
T d1nr0a2 52 -----------------------------------------DVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVD 89 (299)
T ss_dssp -----------------------------------------CSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSC
T ss_pred -----------------------------------------CCCCCcEEEEEeeccce-eecccceeeEEEeccCCcccc
Confidence 12667788899999987 566777889999986543210
Q ss_pred cCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEE
Q 001363 770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 849 (1092)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l 849 (1092)
... ... ..+...+.++++++++++++++.++.+.+|+... ..... ....+.++
T Consensus 90 -----------------~~~-~~~-----~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~ 142 (299)
T d1nr0a2 90 -----------------SSK-AVA-----NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCV 142 (299)
T ss_dssp -----------------TTS-CCE-----EECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEE
T ss_pred -----------------ccc-ccc-----cccccccccccccccccccccccccccccccccc--ccccc--cccccccc
Confidence 000 000 0256778899999999999999999999999643 22222 34568899
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEEcCCceeeE-eeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001363 850 AFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 928 (1092)
Q Consensus 850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 928 (1092)
+|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+.|++||+.++.... ....
T Consensus 143 ~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~--~~~~ 219 (299)
T d1nr0a2 143 ALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA--HTNS 219 (299)
T ss_dssp EECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES--CCCC
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence 9999 89999999999999999999877543 345699999999999999999999999999999998755322 2333
Q ss_pred CCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeee-ccCC-CCCEEEEEEecCCCEEEEEECCCcEEEE
Q 001363 929 PDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW-FPIS-SVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 929 ~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~-~~~h-~~~v~~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
..+|.. .|.+++|+|++++|++ +.|+.|++||+.++...... ...| ...|.++ +++++++|++++.||+|++|
T Consensus 220 ~~~h~~---~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iW 295 (299)
T d1nr0a2 220 WTFHTA---KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFW 295 (299)
T ss_dssp CCCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEE
T ss_pred cccccc---ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEE
Confidence 444443 7999999999999999 57899999999877544322 2334 4566666 45677899999999999999
Q ss_pred EcC
Q 001363 1006 EAS 1008 (1092)
Q Consensus 1006 d~~ 1008 (1092)
|+.
T Consensus 296 dl~ 298 (299)
T d1nr0a2 296 NVP 298 (299)
T ss_dssp ECC
T ss_pred ecc
Confidence 984
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-30 Score=288.53 Aligned_cols=320 Identities=20% Similarity=0.292 Sum_probs=249.5
Q ss_pred ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEE
Q 001363 433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 512 (1092)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~ 512 (1092)
....++||.+.|.+ +++++|+ +|+||+.||+|+|||+.++++++++.+|...|.+++|++ .+|++++.|+.++
T Consensus 8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~ 80 (342)
T d2ovrb2 8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK 80 (342)
T ss_dssp CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence 33478999999865 4677888 899999999999999999999999999999999999954 3899999999999
Q ss_pred EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE
Q 001363 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1092)
Q Consensus 513 vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 592 (1092)
+|+................+...... ...+..+.. +..+.+|+..+++....+.... .. .....+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~ 149 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHV---AA--VRCVQYDGRR 149 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCS---SC--EEEEEECSSC
T ss_pred ccccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeeccc---cc--ceeeccccce
Confidence 99998877776666666566554443 345555544 6679999999998877776544 22 2234455678
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeee
Q 001363 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 672 (1092)
+++++.|+.+++||......+..+..+. .....+++++.++++++.||.|++|++..++.+....
T Consensus 150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~----------- 214 (342)
T d2ovrb2 150 VVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT----------- 214 (342)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC-----------
T ss_pred eeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccceeeeEec-----------
Confidence 8999999999999999988888887553 3456677788999999999999999887654332211
Q ss_pred cCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEe
Q 001363 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 752 (1092)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 752 (1092)
T Consensus 215 -------------------------------------------------------------------------------- 214 (342)
T d2ovrb2 215 -------------------------------------------------------------------------------- 214 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC
Q 001363 753 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM 831 (1092)
Q Consensus 753 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~ 831 (1092)
+|...+.+++++ ++++++++ |+.|++||+.
T Consensus 215 -----------------------------------------------~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~ 245 (342)
T d2ovrb2 215 -----------------------------------------------GHQSLTSGMELK--DNILVSGNADSTVKIWDIK 245 (342)
T ss_dssp -----------------------------------------------CCCSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred -----------------------------------------------ccccceeEEecC--CCEEEEEcCCCEEEEEecc
Confidence 134444444443 45777776 6888888888
Q ss_pred CceeeEEecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec-----cccCCeEEEEEcCCCCEEEE
Q 001363 832 TFKTILTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSKRVTGLVFSDALNILVS 903 (1092)
Q Consensus 832 ~~~~~~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg~~l~s 903 (1092)
..+....+.. |...+.++++++ +++++|+.||.|++||+.+++.+..+. +|.+.|++++|+|++.+||+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~ 322 (342)
T d2ovrb2 246 TGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322 (342)
T ss_dssp TCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred cccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence 7777776654 445667777754 699999999999999999999887763 58889999999999999999
Q ss_pred EeCCCc----EEEEEcCC
Q 001363 904 SGGDAQ----IFVWDVDG 917 (1092)
Q Consensus 904 ~s~Dg~----I~iwd~~~ 917 (1092)
|+.||+ |++||++.
T Consensus 323 g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 323 GSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ECSSSSSCCEEEEEECCC
T ss_pred EeCCCCCeeEEEEEeCCC
Confidence 999996 99999975
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.8e-31 Score=295.75 Aligned_cols=306 Identities=13% Similarity=0.119 Sum_probs=236.7
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 606 (1092)
..+|++++|+|||++|++++. ++.|++||..+++ .+..+.+|. +.|.+++|+|++++|++++.|++|++||
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~---~~V~~l~fsp~~~~l~s~s~D~~i~vWd 79 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWT 79 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCC---CCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence 357999999999999999875 5679999998775 566778877 8999999999999999999999999999
Q ss_pred CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCC
Q 001363 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
+.++.....+....+...|.+++|+|+++.+++++.|+.+++|+...........
T Consensus 80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~------------------------- 134 (371)
T d1k8kc_ 80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK------------------------- 134 (371)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-------------------------
T ss_pred ecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc-------------------------
Confidence 9988877776665666679999999999999999999999999876543221110
Q ss_pred ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001363 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~ 766 (1092)
.....|...|.+++|+|+++++++++.||.+++|+....
T Consensus 135 -----------------------------------------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~ 173 (371)
T d1k8kc_ 135 -----------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173 (371)
T ss_dssp -----------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred -----------------------------------------ccccccccccccccccccccceeccccCcEEEEEeeccC
Confidence 000126678899999999999999999999999997654
Q ss_pred CcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCC
Q 001363 767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT 845 (1092)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~ 845 (1092)
..... .....|+............ .+|...|.+++|+|+|++|++++ |+.|++||+.+++.+..+..|..+
T Consensus 174 ~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 245 (371)
T d1k8kc_ 174 EVEER------PAPTPWGSKMPFGELMFES--SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245 (371)
T ss_dssp TTSCC------CCCBTTBSCCCTTCEEEEC--CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred ccccc------cccccccccccceeeeeec--cCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccccc
Confidence 32111 1112222222211111122 24888999999999999999998 799999999999999999999999
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEEcCC--ceee---------------------------------------Eeecc
Q 001363 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARS--SEVI---------------------------------------SKLEG 884 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~--~~~~---------------------------------------~~l~~ 884 (1092)
|.+++|+| ++++|++|. |+.+++|.... +... .....
T Consensus 246 v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (371)
T d1k8kc_ 246 LLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323 (371)
T ss_dssp EEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS
T ss_pred ceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceeccc
Confidence 99999999 888888665 77666665432 1110 00123
Q ss_pred ccCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcCC
Q 001363 885 HSKRVTGLVFSDAL----NILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 885 h~~~V~~l~~spdg----~~l~s~s~Dg~I~iwd~~~ 917 (1092)
|.+.|+++++.+++ ..++|+|.||.|+|||+++
T Consensus 324 H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 88999999998754 4689999999999999976
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=2e-30 Score=283.69 Aligned_cols=290 Identities=12% Similarity=0.173 Sum_probs=225.6
Q ss_pred CceEEeecCCCceEEEEEcCC-CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC-CCcEEEEEECC--CCCEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNV-GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSP--DGSLL 411 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d-g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~l~~sp--dg~~l 411 (1092)
.+++++|+|+|+. +|.++.+ ..|+.||......... ..+.+| ...|++++|+| +|++|
T Consensus 19 ~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~l 80 (325)
T d1pgua1 19 FTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQYL 80 (325)
T ss_dssp CCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCEE
T ss_pred CeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCEE
Confidence 5689999999995 5555433 3456666544332211 115566 56899999998 67899
Q ss_pred EEEeCCCEEEEEEccCCCcccce-----EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQ-----LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~-----~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
|+|+.||+|+|||+..++..... ..+..|.++|.+++|+++++.+..++++.++.+++|++++++++..+.+|..
T Consensus 81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 160 (325)
T d1pgua1 81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160 (325)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence 99999999999999876654322 1345688899999999999953333445678899999999999999999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCceEEEEEccC-CCEEEEEecCCCCceeEEEEeC
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~d-g~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
.|.+++|++.. ..++++++.||.+++||....+..... ..+...|.+++|+|+ +.++++++. ++.|++||.
T Consensus 161 ~v~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd~ 235 (325)
T d1pgua1 161 RINACHLKQSR-PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDG 235 (325)
T ss_dssp CEEEEEECSSS-SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEET
T ss_pred ccccccccccc-cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeeee
Confidence 99999997653 246889999999999998876655543 345667999999997 577888876 566999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEc---CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC-CCEEE
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GTLLA 638 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~ 638 (1092)
.+++.+..+.+|. ..+..+.|+ |++++|++++.|+.|+|||+++++++..+..+.+...+..+++.+. +.+++
T Consensus 236 ~~~~~~~~l~~~~---~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (325)
T d1pgua1 236 KSGEFLKYIEDDQ---EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312 (325)
T ss_dssp TTCCEEEECCBTT---BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred ccccccccccccc---cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEE
Confidence 9999999999877 444444443 6889999999999999999999999999887766544555555543 45889
Q ss_pred EEeCCCeEEEEEC
Q 001363 639 VIANENRIKILET 651 (1092)
Q Consensus 639 ~~~~dg~i~iw~~ 651 (1092)
+++.||.|++||+
T Consensus 313 s~s~dg~i~vwdl 325 (325)
T d1pgua1 313 SLSLDGTLNFYEL 325 (325)
T ss_dssp EEETTSCEEEEET
T ss_pred EEECCCEEEEEEC
Confidence 9999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-29 Score=276.65 Aligned_cols=286 Identities=13% Similarity=0.141 Sum_probs=218.8
Q ss_pred cEEEEEEecCCcEEEEeecCC-eeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCC-CCCeeEEEEec-
Q 001363 736 KISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS-QEAVPCFALSK- 812 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~-~~~v~~~~~s~- 812 (1092)
.+.+++|+|+|..++.++.+. .++.|+..... ...... +. +| ...|++++|+|
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~--------------------~~~~~~--~~--gh~~~~v~~v~fsP~ 74 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK--------------------VPPVVQ--FT--GHGSSVVTTVKFSPI 74 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCS--------------------SCSEEE--EC--TTTTSCEEEEEECSS
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC--------------------ccceEE--Ee--CCCCCCEEEEEEeeC
Confidence 456789999999988876553 34444422111 011111 11 24 56899999998
Q ss_pred -CCCEEEEEe-CCeEEEEEcCCceee--------EEecCCCCCeEEEEEcCCCCCEEEEEeC--CCcEEEEEcCCceeeE
Q 001363 813 -NDAYLFSAS-GGVISLYIVMTFKTI--------LTIMPPSPTATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVIS 880 (1092)
Q Consensus 813 -dg~~l~~~s-dg~i~iwd~~~~~~~--------~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~ 880 (1092)
++++|++++ ||+|+|||+..++.. ..+..|.+.|.+++|++ ++++|++++. ++.+++|+.++++.+.
T Consensus 75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
T d1pgua1 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG 153 (325)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence 678999998 799999998754322 33556888999999999 8888887764 6789999999999999
Q ss_pred eeccccCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC-CCEEEE-EeCC
Q 001363 881 KLEGHSKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHET 957 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spdg~~-l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~-~~d~ 957 (1092)
.+.+|...|.+++|+|++.+ +++++.|+.|++||+...+... ......++. ..|.+++|+|| +.++++ +.|+
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~ 228 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR 228 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccc
Confidence 99999999999999999875 7789999999999998755332 233333333 37999999997 577887 6889
Q ss_pred cEEEEEcCCceeeeeeccCCCCCEEEEEEe---cCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccce
Q 001363 958 HLAIYEAEELTCLKQWFPISSVPISQATFS---CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus 958 ~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs---~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
.|++||+.+++.+.. +.+|..++.++.|+ +||++|++++.|++|+|||+.+++.+..+.... +...+..+
T Consensus 229 ~i~iwd~~~~~~~~~-l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~ 301 (325)
T d1pgua1 229 KISCFDGKSGEFLKY-IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK------QQLGNQQV 301 (325)
T ss_dssp CEEEEETTTCCEEEE-CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT------TCGGGCEE
T ss_pred ceeeeeecccccccc-ccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC------CcccCeEE
Confidence 999999999998887 45787777777666 789999999999999999999999987776222 12223445
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1035 AIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1035 ~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
++.+.+ +.+|++|+.||+|++||+
T Consensus 302 ~~~~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 302 GVVATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEET
T ss_pred EEEECC--CCEEEEEECCCEEEEEEC
Confidence 555554 468999999999999996
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=3e-27 Score=267.72 Aligned_cols=368 Identities=11% Similarity=0.043 Sum_probs=265.7
Q ss_pred eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001363 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1092)
Q Consensus 348 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1092)
.++++.+.||+|.|||..+++.+.. +..| ..+..++|||||++|++++.|++|.+||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence 4578999999999999999999876 3344 4699999999999999999999999999998
Q ss_pred CCccc--ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEE
Q 001363 428 GSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505 (1092)
Q Consensus 428 ~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~ 505 (1092)
++... .+....+|.+.+.+.+|+|||++ ++++++.+++|++||.++++.+..+..|...+....+.+.
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~--------- 162 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE--------- 162 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC---------
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC---------
Confidence 76432 22223467778888899999995 4578899999999999999999999887766655444332
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001363 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1092)
Q Consensus 506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1092)
.....+.++|+|..++.... .++.|.+||..+++......... ...+..++
T Consensus 163 ------------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~--g~~~~~~~ 213 (432)
T d1qksa2 163 ------------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA--ERFLHDGG 213 (432)
T ss_dssp ------------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--CSSEEEEE
T ss_pred ------------------------CceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcc--cCccccce
Confidence 23345678999988776553 26679999998877655444322 25688999
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCC---CCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeeec
Q 001363 586 FDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG---LPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA 660 (1092)
Q Consensus 586 ~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~ 660 (1092)
|+|+++++++++ .++.+.++|..+++....+..... ........+...+...++.. .++.+.+|.......
T Consensus 214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~---- 289 (432)
T d1qksa2 214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH---- 289 (432)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----
T ss_pred ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc----
Confidence 999999888876 456789999999988887764321 11223333333344343332 255666665432210
Q ss_pred ccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEE
Q 001363 661 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 740 (1092)
Q Consensus 661 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l 740 (1092)
..+...+...
T Consensus 290 ----------------------------------------------------------------------~~~~~~v~~~ 299 (432)
T d1qksa2 290 ----------------------------------------------------------------------PDNAWKILDS 299 (432)
T ss_dssp ----------------------------------------------------------------------TTTBTSEEEE
T ss_pred ----------------------------------------------------------------------cccccEEEEE
Confidence 1144567778
Q ss_pred EEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE
Q 001363 741 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 820 (1092)
Q Consensus 741 ~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~ 820 (1092)
.+++++..+++++.+...++|...... .|......+++ ||++.++++
T Consensus 300 ~~~~~g~~~~~~s~p~~~~lw~~~~~~--------------------------------~~~~~~~sv~v-pDg~~la~~ 346 (432)
T d1qksa2 300 FPALGGGSLFIKTHPNSQYLYVDATLN--------------------------------PEAEISGSVAV-FDIKAMTGD 346 (432)
T ss_dssp EECSCSCCCCEECCTTCSEEEEECTTC--------------------------------SSHHHHTCEEE-EEGGGCCCS
T ss_pred EEcCCCCeEEEEecCCccceeecccCC--------------------------------CCCCeeeEEEE-Eechhhccc
Confidence 888888888888888888888643211 12223334555 899999999
Q ss_pred e-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe-----CCCcEEEEEcCCceeeEeeccc
Q 001363 821 S-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-----DDSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 821 s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-----~dg~v~iwd~~~~~~~~~l~~h 885 (1092)
+ |+.+++|++.++.. +..|...+.+++||| ||++|+++. .+|.|.|||..++++...+++.
T Consensus 347 s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 347 GSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp SSCCCEEEECHHHHHT---CCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred ccCCceEecccccccc---cCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 8 68999999876533 335777899999999 888775553 4689999999999998888753
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.4e-27 Score=252.30 Aligned_cols=269 Identities=11% Similarity=0.131 Sum_probs=213.3
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
+.+++|+||.+.|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~ 54 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDN 54 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEEC
T ss_pred ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEEe
Confidence 56789999999999999987 799999999999998754 3469999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
++++ .+++++.|+++++|++...+ ....+..+++++++. .+++ +.++.+.+|+..+++.+..+..+
T Consensus 55 ~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 120 (287)
T d1pgua2 55 SKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVL-TNDDDLLILQSFTGDIIKSVRLN 120 (287)
T ss_dssp CSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEE-ETTSEEEEEETTTCCEEEEEECS
T ss_pred cCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEE-eecccceeeeccceeeeeecccc
Confidence 9765 57889999999999986531 233467888999887 4554 45677999999999998888643
Q ss_pred CcCeEEEeecccCCccEEEEEecC-CeEEEEEcCCCCceEEec-CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
..+.++.. ++..+++++.+ +.+++|++.......... .+...+.+++|+|++.+|++++. ++.|++||.
T Consensus 121 -~~~~~~~~----~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~ 191 (287)
T d1pgua2 121 -SPGSAVSL----SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDL 191 (287)
T ss_dssp -SCEEEEEE----CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred -ceeeeeec----cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----cccccceee
Confidence 44544433 34566666666 579999987666555544 35668999999999999999986 556999999
Q ss_pred CCCeEEEE-EeeccccCCceEEEEEcCC----------CCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCCCceEEE
Q 001363 563 SEGAIKRT-YQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 563 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~----------~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
.+++.... +.+|. ..|.+++|+|. +.++++|+.|++|++||+++ ++.+..+..| ...|.+++|
T Consensus 192 ~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~~ 266 (287)
T d1pgua2 192 QSREVKTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLLW 266 (287)
T ss_dssp TTTEEEECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEEE
T ss_pred cccccccccccccc---cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCCeEEEEE
Confidence 99887653 45555 88999999874 46899999999999999977 4555555544 456999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEC
Q 001363 631 NKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
+|++ .+++++.|+.|++|++
T Consensus 267 ~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 267 ETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EETT-EEEEEETTSCEEEEEE
T ss_pred CCCC-EEEEEECCCeEEEEEE
Confidence 9986 5889999999999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.4e-25 Score=240.70 Aligned_cols=274 Identities=20% Similarity=0.285 Sum_probs=220.3
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
++...+|+..|+|++| ||+ +||+|+.||+|+|||+.+++.+.+ +.+|.+.|.+++|
T Consensus 8 i~~~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~-- 63 (293)
T d1p22a2 8 IHCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY-- 63 (293)
T ss_dssp EECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--
T ss_pred EeccCCCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--
Confidence 4556788889998765 787 699999999999999999998875 7789999999887
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce---eEEEec
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEG 483 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~ 483 (1092)
++++|++|+.|+.|++|++..+.... ....+.. ....+.+... .++++..++.+.+||..+... ...+..
T Consensus 64 ~~~~l~s~s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (293)
T d1p22a2 64 DERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVG 136 (293)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred ccceeecccccccccccccccccccc---ccccccc--cccccccccc--ceeecccccceeEeeccccccccccccccc
Confidence 67899999999999999999876443 2222322 2334445555 689999999999999887654 345567
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
|...+..+.+. ...+++++.|+.|++||.++.+....+..+...+..+.++ +..+++++. ++.|++||+.
T Consensus 137 ~~~~v~~~~~~----~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~ 206 (293)
T d1p22a2 137 HRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIE 206 (293)
T ss_dssp CSSCEEEEEEE----TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETT
T ss_pred cccccccceec----ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecc
Confidence 88888877663 2578999999999999999999888888888888776664 568888876 5679999999
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceEEEEeCCCCCCCCceEEEccCC
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------VQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
++..+..+.++. ..+.. +.+++.++++++.||.|++||+.. ...+..+..|. ..|.+++|+ +
T Consensus 207 ~~~~~~~~~~~~---~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~--~~V~~v~~d--~ 277 (293)
T d1p22a2 207 CGACLRVLEGHE---ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQFD--E 277 (293)
T ss_dssp TCCEEEEECCCS---SCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEEC--S
T ss_pred cceeeeeecccc---eeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC--CCEEEEEEc--C
Confidence 999999888876 56654 567788999999999999999743 34567776654 468899884 6
Q ss_pred CEEEEEeCCCeEEEEE
Q 001363 635 TLLAVIANENRIKILE 650 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~ 650 (1092)
++|++++.||+|++||
T Consensus 278 ~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 278 FQIVSSSHDDTILIWD 293 (293)
T ss_dssp SCEEECCSSSEEEEEC
T ss_pred CEEEEEecCCEEEEeC
Confidence 7899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2e-26 Score=247.17 Aligned_cols=271 Identities=10% Similarity=0.089 Sum_probs=218.3
Q ss_pred CceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccc
Q 001363 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 733 (1092)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~ 733 (1092)
.++++.+.+|...|++++++ | +++|+.||+|++|+..... ..|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s----------------------~----l~sgs~Dg~v~~Wd~~~~~-----------~~h 45 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVN----------------------P----LISGSYDGRIMEWSSSSMH-----------QDH 45 (287)
T ss_dssp EEEEEEECCCSSCEEEEETT----------------------T----TEEEETTSCEEETTTTEEE-----------CCC
T ss_pred cceeEEECCCCCceEEEEEC----------------------c----EEEEeCCCeEEEEECCCCC-----------CCC
Confidence 35778899999999999886 2 8999999999999976432 248
Q ss_pred cccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC
Q 001363 734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d 813 (1092)
...|.++++++++. +++++.|+.+++|++.... ....+.+++++++
T Consensus 46 ~~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~~~~---------------------------------~~~~~~~~~~~~~ 91 (287)
T d1pgua2 46 SNLIVSLDNSKAQE-YSSISWDDTLKVNGITKHE---------------------------------FGSQPKVASANND 91 (287)
T ss_dssp CSCEEEEECCSTTC-CEEEETTTEEEETTEEEEE---------------------------------CSSCEEEEEECSS
T ss_pred CCCEEEEEecCCCe-EEEEeeccccccccccccc---------------------------------cccceeeeeeccC
Confidence 88999999997765 7889999999999865321 3345778899999
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCceeeEeec-cccCCeEE
Q 001363 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLE-GHSKRVTG 891 (1092)
Q Consensus 814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~-~h~~~V~~ 891 (1092)
+..++++.++.+.+|+..+++.+..+..+ ..+ .++++ ++..+++++.++ .+++|++...+....+. .|.+.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~ 167 (287)
T d1pgua2 92 GFTAVLTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY 167 (287)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECS-SCE--EEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEE
T ss_pred CceEEEeecccceeeeccceeeeeecccc-cee--eeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeE
Confidence 99999988999999999999988887643 333 45666 566777777765 79999998776655554 48889999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC----------CCEEEE-EeCCcEE
Q 001363 892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD----------QTRFLL-VHETHLA 960 (1092)
Q Consensus 892 l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d----------g~~la~-~~d~~i~ 960 (1092)
++|+|++++|++++.||.|++||+.+++.. .....+|.. .|.+++|+|+ +.++++ +.|++|+
T Consensus 168 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~----~~~~~~h~~---~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~ 240 (287)
T d1pgua2 168 ISISPSETYIAAGDVMGKILLYDLQSREVK----TSRWAFRTS---KINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 240 (287)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEE----ECCSCCCSS---CEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred EEeccCccccccccccccccceeecccccc----ccccccccc---ccceeeecccccccccccCCCCeeEeecCCCeEE
Confidence 999999999999999999999999986532 223344443 7999999875 467887 6789999
Q ss_pred EEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 961 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
+||+.++........+|...|++++|+|++ .|+|++.||+|++|++
T Consensus 241 iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 241 IYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred EEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 999987555555577999999999999987 5889999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.4e-27 Score=258.72 Aligned_cols=297 Identities=9% Similarity=0.013 Sum_probs=216.5
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
++++.+++|++.|++|+|||+|+ +||+|+.||+|+|||++++....... ...+|..+|.+++|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~----------------~~~~h~~~V~~v~f 64 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLL----------------QSLRYKHPLLCCNF 64 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEE----------------EEEECSSCEEEEEE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEE----------------EecCCCCCEEEEEE
Confidence 35788999999999999999998 68999999999999998776443211 13369999999999
Q ss_pred CCC-CCEEEEEeCCCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001363 405 SPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1092)
Q Consensus 405 spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~- 481 (1092)
+|+ +.+|++|+.|+.|++|++..+.... ....+. .......+.+++. .+++++.|+++++||++++......
T Consensus 65 ~~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~ 139 (342)
T d1yfqa_ 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp EESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred eCCCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc--cccccccccccceeeccccccceeee
Confidence 986 5689999999999999999876544 233333 3344555666666 7999999999999998765433222
Q ss_pred ---ecCCcC--eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEc-cCCCEEEEEecCCC
Q 001363 482 ---EGHGAP--VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYS-ANGRRLFSCGTSKE 552 (1092)
Q Consensus 482 ---~~~~~~--v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~ 552 (1092)
..+... .....+ ..++..+++++.||.|++||+....... ........+.+..+. .++..+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--- 214 (342)
T d1yfqa_ 140 KNLNSNNTKVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI--- 214 (342)
T ss_dssp EESCSSSSSSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET---
T ss_pred cccccccccceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC---
Confidence 222222 222233 3355789999999999999998766433 233334445555554 46677777765
Q ss_pred CceeEEEEeCCCCeEE------EEE------eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 001363 553 GESFLVEWNESEGAIK------RTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~------~~~------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
++.+.+|+....... ..+ ..+..+...+.+++|+|++++|++|+.||.|++||+.+++.+..+..+.
T Consensus 215 -dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~ 293 (342)
T d1yfqa_ 215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred -CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 566888876543211 111 1112234678999999999999999999999999999999988875432
Q ss_pred CCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 621 GLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.+..++|+|+++++++++.|+.+++|...
T Consensus 294 ---~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 294 ---EDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred ---CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 35678999999999999999888877543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=8.3e-26 Score=256.90 Aligned_cols=366 Identities=9% Similarity=0.013 Sum_probs=246.7
Q ss_pred EEeecCCCc-eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001363 339 SMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 339 ~v~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
...+++|.+ .++++++.||+|+|||+.+++.+.+ +..| ..+..++|||||++|++++.|
T Consensus 23 ~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d 82 (426)
T d1hzua2 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRD 82 (426)
T ss_dssp SCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETT
T ss_pred cccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCC
Confidence 345666654 3457788899999999999998876 4445 469999999999999999999
Q ss_pred CEEEEEEccCCCccc--ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001363 418 HIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 418 ~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
++|++||+.+++... .+....+|.+.+.+++|+|||++ +++++..++.+++||..+++++..+.+|...+..+.+.+
T Consensus 83 ~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 161 (426)
T d1hzua2 83 ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161 (426)
T ss_dssp SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecC
Confidence 999999999987533 12223467788889999999995 456677899999999999999999988887777666644
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEeec
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGL 574 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~ 574 (1092)
.+. ... +.+++++..++.... +.+.+.+++...+.... ....+
T Consensus 162 ~~~-~~~--------------------------------i~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~ 205 (426)
T d1hzua2 162 EPR-VAA--------------------------------IIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGA 205 (426)
T ss_dssp CCC-EEE--------------------------------EEECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEEC
T ss_pred CCc-eeE--------------------------------EEECCCCCEEEEecC---CCCeEEEEEeccccceeeEEecc
Confidence 322 122 334444444444332 13345555554443222 22233
Q ss_pred cccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE-EE--EEeCCCeEEEEE
Q 001363 575 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LA--VIANENRIKILE 650 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~--~~~~dg~i~iw~ 650 (1092)
. ..+..+.|+|++++++++. .+..+.+++..+++.+................+...+.. +. ..+.|+.+.+|+
T Consensus 206 ~---~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~ 282 (426)
T d1hzua2 206 A---PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG 282 (426)
T ss_dssp C---SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred C---CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEee
Confidence 3 6788999999999988866 566789999999999888775544333333333332221 11 111233333333
Q ss_pred CCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCC
Q 001363 651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 730 (1092)
Q Consensus 651 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~ 730 (1092)
.... .
T Consensus 283 ~~~~------------------------------------------------------~--------------------- 287 (426)
T d1hzua2 283 TDPK------------------------------------------------------N--------------------- 287 (426)
T ss_dssp CCTT------------------------------------------------------T---------------------
T ss_pred cccc------------------------------------------------------c---------------------
Confidence 2211 0
Q ss_pred ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
|....+...... . +|...+..++|
T Consensus 288 ----------------------------------------------------~~~~~~~~~~~l--~--g~~~~v~~v~~ 311 (426)
T d1hzua2 288 ----------------------------------------------------HPQYAWKKVAEL--Q--GQGGGSLFIKT 311 (426)
T ss_dssp ----------------------------------------------------CTTTBTSEEEEE--E--CSSSCCCCEEC
T ss_pred ----------------------------------------------------cccccceEeEEE--e--cCCCceeEEEc
Confidence 000111111111 1 36777888999
Q ss_pred ecCCCEEEEE-------e-CCeEEEEEcCCceeeEEe---------cCCCCCeEEEEEcCCCCCEEEE-E----eCCCcE
Q 001363 811 SKNDAYLFSA-------S-GGVISLYIVMTFKTILTI---------MPPSPTATSLAFNPHDNNVIAI-G----MDDSTI 868 (1092)
Q Consensus 811 s~dg~~l~~~-------s-dg~i~iwd~~~~~~~~~~---------~~~~~~i~~l~~s~~d~~~las-g----~~dg~v 868 (1092)
+||+++|++. + +++|+|||+.+++...++ ..+...+.+++||| ||++++. + +.+|.|
T Consensus 312 sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i 390 (426)
T d1hzua2 312 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSAL 390 (426)
T ss_dssp CTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEE
T ss_pred CCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeE
Confidence 9999999853 2 578999999998876554 24566799999999 8876643 3 357889
Q ss_pred EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEE
Q 001363 869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 902 (1092)
+|||..+++....+.++. .++|+|++-+
T Consensus 391 ~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 391 VVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp EEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred EEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence 999999999999988775 3467777643
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6e-26 Score=255.33 Aligned_cols=292 Identities=12% Similarity=0.088 Sum_probs=212.7
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE---
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV--- 402 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l--- 402 (1092)
.....++|.+.|.++++++ + ++++|+.|++|+|||..+.+....... .. ....|...+..+
T Consensus 6 ~~~~~~~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~ 69 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDK----------SY---SHFVHKSGLHHVDVL 69 (393)
T ss_dssp EEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGG----------EE---EEECCTTCEEEEEEE
T ss_pred eeecCCcccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCcccce----------eE---eeeeccCCceEeeeE
Confidence 3466789999999999976 4 588999999999999877653221000 00 022344433322
Q ss_pred ---EECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEE-------cccccceeEEEEecCCC---cEEEEEEeCCCcEE
Q 001363 403 ---VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEI-------DAHVGNVNDLAFSAPCK---QISVITCGDDKTIK 468 (1092)
Q Consensus 403 ---~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~-------~~h~~~v~~~~~s~d~~---~l~l~s~~~d~~i~ 468 (1092)
..++ ++.++++++.||.|++|++..+......... ..+...+..++|.+++. ..++++++.|++++
T Consensus 70 ~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~ 149 (393)
T d1sq9a_ 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY 149 (393)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE
T ss_pred eeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEE
Confidence 2222 3467889999999999998866543322111 13455678888887642 12789999999999
Q ss_pred EEECCCCce------------------eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE------
Q 001363 469 VWDAVTGSR------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------ 524 (1092)
Q Consensus 469 vwd~~~~~~------------------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------ 524 (1092)
+||+..... ......+...+.+++|++ ++ +|++|+.||+|++||+.+.+....
T Consensus 150 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~ 226 (393)
T d1sq9a_ 150 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHS 226 (393)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred EEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeecccccccccccccc
Confidence 999743210 111123456688888865 44 899999999999999998876553
Q ss_pred ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-------------eccccCCceEEEEEcCCCC
Q 001363 525 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-------------GLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 525 ~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~ 591 (1092)
+..|..+|.+++|+|||++|++++.++. .+.|++||+.+++.+..+. +|. ..|.+++|+|+++
T Consensus 227 l~~h~~~V~~l~~spdg~~l~sgs~D~t-~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~---~~V~~l~fspd~~ 302 (393)
T d1sq9a_ 227 MINNSNSIRSVKFSPQGSLLAIAHDSNS-FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGE 302 (393)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETT-EEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEEECSSSS
T ss_pred cccccceEEEcccccccceeeeecCCCC-cceeeecccccceeeeeeccccccccceeeeeccc---CceeeeccCCCCC
Confidence 3457789999999999999999987432 4679999999999888775 454 8899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCC--CCceEEEccCCCEEEEE
Q 001363 592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP--ENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~~~ 640 (1092)
+|++++.|++|++||+++++++.++..|.... ....++|+|++..++++
T Consensus 303 ~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred eeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence 99999999999999999999999998774321 12358899999877644
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.3e-25 Score=252.46 Aligned_cols=272 Identities=11% Similarity=0.109 Sum_probs=201.1
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc---cceEEEcccccceeEEEEe---c-CC-CcEEEEEEe
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFS---A-PC-KQISVITCG 462 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s---~-d~-~~l~l~s~~ 462 (1092)
..++|.+.|.++++++ ++|++++.|++|+|||..+.+.. ........|...+..+... + ++ ...++++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 3678999999999875 69999999999999998765431 1222233444433322221 1 11 112678999
Q ss_pred CCCcEEEEECCCCceeEEE----------ecCCcCeEEEeecccCC---ccEEEEEecCCeEEEEEcCCCCc--------
Q 001363 463 DDKTIKVWDAVTGSRTYSF----------EGHGAPVYSLCPHAKEN---IHFIFSISVDGKIKAWLYDSLGA-------- 521 (1092)
Q Consensus 463 ~d~~i~vwd~~~~~~~~~~----------~~~~~~v~~i~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~-------- 521 (1092)
.||.|++|++..+.....+ ..+...+..+++.+..+ +.++++++.||.+++|++.....
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~ 166 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence 9999999997654332211 12344566676655432 57899999999999999853321
Q ss_pred ----------eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc---ccCCceEEEEEcC
Q 001363 522 ----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFDT 588 (1092)
Q Consensus 522 ----------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~ 588 (1092)
......+...+.+++|+|++ ++++++. ++.|++||+.+++.+..+.... .|...|.+++|+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred eccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccceEEEccccc
Confidence 00112234458899999998 7788765 7789999999999887665322 2348999999999
Q ss_pred CCCEEEEEeCCCc---EEEEECCCCceEEEEeCC-----------CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAG-----------GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 589 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++++|++|+.|++ |++||+++++.+..+... +|...|.+++|+|++++|++++.|++|++||+.++
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence 9999999998874 899999999998887532 34567999999999999999999999999999999
Q ss_pred ceeeecccccCceee
Q 001363 655 NSVDAAGVLSDNLRK 669 (1092)
Q Consensus 655 ~~~~~~~~~~~~v~~ 669 (1092)
+++..+.+|.+.|..
T Consensus 322 ~~~~~l~gH~~~v~~ 336 (393)
T d1sq9a_ 322 ERITTLNMHCDDIEI 336 (393)
T ss_dssp EEEEEEECCGGGCSS
T ss_pred CEEEEECCcCCcccC
Confidence 999999999988853
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=9.7e-25 Score=233.97 Aligned_cols=271 Identities=16% Similarity=0.254 Sum_probs=219.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..+|...|+|++| ||++||+|+.||+|+|||+.+++.++ ++.+|.+.|.+++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 5568889998764 79999999999999999999987665 78899999999887 566 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEccCCCEEEEEe
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
+..+........+......... ....++++..++.+++|+........ ....+...+..+.+. ...+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceec--cccccccc
Confidence 9999888877665555544332 34589999999999999998766433 445566677666655 45566666
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
. ++.+++||..+++.+..+.++. ..+..+.++ +..+++++.||.|++||+.+...+.....+.. ...
T Consensus 156 ~----d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~ 222 (293)
T d1p22a2 156 G----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE----LVR 222 (293)
T ss_dssp T----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEE
T ss_pred C----CCceeeecCCCCcEEEEEcccc---cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce----eee
Confidence 4 6779999999999999998877 777777765 56899999999999999999999988875533 234
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCC---------CceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCc
Q 001363 629 CFNKNGTLLAVIANENRIKILETPE---------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 699 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 699 (1092)
.+++++.+|++++.||.|++||+.. ...+..+.+|...|.+++++ ++
T Consensus 223 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d------------------------~~ 278 (293)
T d1p22a2 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EF 278 (293)
T ss_dssp EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SS
T ss_pred eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc------------------------CC
Confidence 5678899999999999999999653 24567778888888877664 56
Q ss_pred cceeeccccccceec
Q 001363 700 PEISVEAENKSEVEK 714 (1092)
Q Consensus 700 ~l~s~~~d~~i~lw~ 714 (1092)
++++++.|++|++||
T Consensus 279 ~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 279 QIVSSSHDDTILIWD 293 (293)
T ss_dssp CEEECCSSSEEEEEC
T ss_pred EEEEEecCCEEEEeC
Confidence 799999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.5e-26 Score=251.36 Aligned_cols=265 Identities=10% Similarity=-0.016 Sum_probs=197.9
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
+..+|++.|++|+|+|++++||+|+.||+|+|||+.++..........+|.++|.+++|+|++.. +|++|+.|+.|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence 37789999999999999999999999999999999887655444445579999999999998654 79999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe----cC--CCCceEEEEEccCCCEE
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----DA--PGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~--~~~~i~~~~~s~dg~~l 544 (1092)
++..+........+...+....+.. .+...+++++.++.+++||++........ .. .........+.+++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred ecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 9999888777766655544443332 24568999999999999998754433221 11 12244567788889999
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceE------EEEe
Q 001363 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLL------TTID 617 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~------~~~~ 617 (1092)
++++. ++.|++||+.++...............+.+..+. .++..+++++.||.+.+|+....... ....
T Consensus 164 ~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~ 239 (342)
T d1yfqa_ 164 IVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp EEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred eeecC----CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence 99876 6679999998776544433333223455555554 45678899999999999987653211 1111
Q ss_pred -------CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001363 618 -------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 618 -------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
...+...+.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~ 290 (342)
T d1yfqa_ 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec
Confidence 11233457899999999999999999999999999887766553
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=7.6e-27 Score=259.54 Aligned_cols=316 Identities=15% Similarity=0.091 Sum_probs=220.5
Q ss_pred eEEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001363 338 MSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 338 ~~v~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 416 (1092)
..-.||| ||+ ++|+++. |.|.|||+.++..+. + +|...|.+++|||||++|++++.
T Consensus 6 ~~~~fSP~dG~-~~a~~~~-g~v~v~d~~~~~~~~--------------------~-~~~~~v~~~~~spDg~~l~~~~~ 62 (360)
T d1k32a3 6 FAEDFSPLDGD-LIAFVSR-GQAFIQDVSGTYVLK--------------------V-PEPLRIRYVRRGGDTKVAFIHGT 62 (360)
T ss_dssp GEEEEEECGGG-CEEEEET-TEEEEECTTSSBEEE--------------------C-SCCSCEEEEEECSSSEEEEEEEE
T ss_pred hcccccCCCCC-EEEEEEC-CeEEEEECCCCcEEE--------------------c-cCCCCEEEEEECCCCCEEEEEEc
Confidence 3467999 999 5677654 899999999887653 2 59999999999999999998765
Q ss_pred CC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec
Q 001363 417 KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 417 d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 494 (1092)
+. .|++||+++++.. .+..|...|.+++|+|||+ +|++++.++.+++|++.+++....+..|...+.+++|+
T Consensus 63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 136 (360)
T d1k32a3 63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 136 (360)
T ss_dssp TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred CCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence 53 7999999987543 4678999999999999999 89999999999999999999999999999999999995
Q ss_pred ccCCccEEEEEe----------cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 495 AKENIHFIFSIS----------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 495 ~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
+ ||++|+.+. .++.+++|++.+.+.. ....+...+..++|+|||++|++++. ++.+.+||...
T Consensus 137 p--dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~ 209 (360)
T d1k32a3 137 D--NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVV 209 (360)
T ss_dssp T--TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSS
T ss_pred c--ceeeeeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCCCCEEEEEeC----CCceEcccccc
Confidence 5 677887653 3456999999876543 44456667889999999999999876 45588898765
Q ss_pred CeEE-------EEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 565 GAIK-------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 565 ~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
.... ..+..+. ..+..+.|++++..+.++..+.. +..++...+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 265 (360)
T d1k32a3 210 LNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD--------------------- 265 (360)
T ss_dssp SCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC---------------------
T ss_pred cceeeccccceEEEeccc---CccccceECCCcCcccccceeecccccceeecccCcCc---------------------
Confidence 5432 1122222 33333445555554443322211 1111111111
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
.......++.+..+..... ++++.++++++.++.+++
T Consensus 266 ---~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~i~~ 302 (360)
T d1k32a3 266 ---YRMIIPLESSILIYSVPVH----------------------------------------GEFAAYYQGAPEKGVLLK 302 (360)
T ss_dssp ---EEEEEECSSEEEEEECCCC----------------------------------------CSHHHHHHCCCCCEEEEE
T ss_pred ---eeEeeecCCCceEEEEEec----------------------------------------CCCeeEEEecCCCCEEEE
Confidence 1111111111111111000 234556667777777788
Q ss_pred eccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001363 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1092)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~ 766 (1092)
||+...+. ..+.+.|.+++|+|||++|++++.||.|++|++..+
T Consensus 303 ~d~~~~~~----------~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 303 YDVKTRKV----------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346 (360)
T ss_dssp EETTTCCE----------EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred EECCCCeE----------EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence 87654321 124567899999999999999999999999998654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=2.4e-25 Score=251.99 Aligned_cols=352 Identities=9% Similarity=0.050 Sum_probs=259.0
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEeCC-CCCCCCceEEE
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG-GGLPENPRICF 630 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~-~~~~~v~~v~~ 630 (1092)
++.|.+||..+++.+..+..+. .+..++|+|||+++++++.|+++++||+.+++. ...+... .+...+.+.+|
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g~----~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~ 116 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME 116 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence 6779999999999999998754 689999999999999999999999999988764 3333322 11122344567
Q ss_pred ccCCCEE-EEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccc
Q 001363 631 NKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1092)
Q Consensus 631 s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 709 (1092)
+|||++| ++++.++.+++||..+++.+..+..+...+....+.
T Consensus 117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~------------------------------------ 160 (432)
T d1qksa2 117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH------------------------------------ 160 (432)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE------------------------------------
T ss_pred CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc------------------------------------
Confidence 7899986 677889999999999998887766544433222222
Q ss_pred cceeccccccCccccccccCCccccccEEEEEEecCCcEEEEe-ecCCeeEEEeecCCCcCcCcccccccCCccccCCCC
Q 001363 710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 788 (1092)
Q Consensus 710 i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g 788 (1092)
+......+.++++|..++.+ ..++.+.+|+.....
T Consensus 161 -----------------------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~--------------------- 196 (432)
T d1qksa2 161 -----------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN--------------------- 196 (432)
T ss_dssp -----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS---------------------
T ss_pred -----------------------CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC---------------------
Confidence 33456678899999876544 456888888754321
Q ss_pred CceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC-----CCCCeEEEEEcCCCCCEEEE
Q 001363 789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAI 861 (1092)
Q Consensus 789 ~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~las 861 (1092)
......+ .+...+..++|+|||+++++++ ++.+.++|..+++.+..+.. |........+.. .+...++
T Consensus 197 -~~~~~~i---~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~ 271 (432)
T d1qksa2 197 -NLKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWAT 271 (432)
T ss_dssp -EEEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEE
T ss_pred -cceEEEE---cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceecc
Confidence 1111111 1445678999999999998887 47899999999988776542 334455556655 5555555
Q ss_pred Ee-CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001363 862 GM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 862 g~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
.. .++.|.+|+..... ...|...|....++|++..+++++.+.+.++|+..+.. .+.. ...
T Consensus 272 ~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-----------~~~~---~~~ 333 (432)
T d1qksa2 272 SHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-----------PEAE---ISG 333 (432)
T ss_dssp EBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-----------SSHH---HHT
T ss_pred cccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-----------CCCC---eee
Confidence 43 37889999876543 35678889999999999999999999999999876522 1111 133
Q ss_pred EEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE-----CCCcEEEEEcCCCceEE
Q 001363 941 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus 941 ~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-----~Dg~i~vwd~~~~~~~~ 1014 (1092)
++++ ||++.+++ +.|+.+++|++.++..+ ..|...|.+++|||||++|+.+. .+|.|.|||..++++..
T Consensus 334 sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~ 408 (432)
T d1qksa2 334 SVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH 408 (432)
T ss_dssp CEEE-EEGGGCCCSSSCCCEEEECHHHHHTC----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred EEEE-EechhhcccccCCceEeccccccccc----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence 4555 99999998 67899999998766433 35677899999999999887664 46889999999999987
Q ss_pred eec
Q 001363 1015 RIL 1017 (1092)
Q Consensus 1015 ~~~ 1017 (1092)
.+.
T Consensus 409 ~i~ 411 (432)
T d1qksa2 409 VIK 411 (432)
T ss_dssp EEC
T ss_pred Eec
Confidence 775
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=1.6e-26 Score=256.83 Aligned_cols=327 Identities=10% Similarity=-0.006 Sum_probs=230.3
Q ss_pred EEEEcc-CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCC
Q 001363 534 RMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKV 610 (1092)
Q Consensus 534 ~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~ 610 (1092)
.-.||| ||+++++++ .+.|++||..++..++. +|. ..|.+++|+|||++|++++.+. .|++||..++
T Consensus 7 ~~~fSP~dG~~~a~~~-----~g~v~v~d~~~~~~~~~--~~~---~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~ 76 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-----RGQAFIQDVSGTYVLKV--PEP---LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG 76 (360)
T ss_dssp EEEEEECGGGCEEEEE-----TTEEEEECTTSSBEEEC--SCC---SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC
T ss_pred cccccCCCCCEEEEEE-----CCeEEEEECCCCcEEEc--cCC---CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC
Confidence 356999 999999986 45699999998887654 455 7899999999999998866543 7999999988
Q ss_pred ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceee
Q 001363 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 690 (1092)
+...... +...+.+++|+|+|++|++++.++.+++|+..+++....+..
T Consensus 77 ~~~~~~~---~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 125 (360)
T d1k32a3 77 KAEKFEE---NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---------------------------- 125 (360)
T ss_dssp CEEECCC---CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----------------------------
T ss_pred cEEEeeC---CCceEEeeeecccccccceeccccccccccccccceeeeeec----------------------------
Confidence 7664432 334689999999999999999999999999987654433321
Q ss_pred cCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCc
Q 001363 691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 770 (1092)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~ 770 (1092)
+...+.+++|+|+|++|+.+..++...
T Consensus 126 ------------------------------------------~~~~~~~~~~spdg~~la~~~~~~~~~----------- 152 (360)
T d1k32a3 126 ------------------------------------------REAMITDFTISDNSRFIAYGFPLKHGE----------- 152 (360)
T ss_dssp ------------------------------------------SSSCCCCEEECTTSCEEEEEEEECSST-----------
T ss_pred ------------------------------------------ccccccchhhccceeeeeeeccccccc-----------
Confidence 223344566666666665544331100
Q ss_pred CcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEE
Q 001363 771 STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSL 849 (1092)
Q Consensus 771 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l 849 (1092)
+.+. ++.+++||+.+++.... ..+...+..+
T Consensus 153 -----------------------------------------------~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~ 184 (360)
T d1k32a3 153 -----------------------------------------------TDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAP 184 (360)
T ss_dssp -----------------------------------------------TCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEE
T ss_pred -----------------------------------------------eeeccccceeeeccccCceeee-cccccccccc
Confidence 0011 34688999988776544 4467788999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEEcCCcee-------eEeeccccCCeEEEEEcCCCCEEEEEeCCCc---EEEEEc--CC
Q 001363 850 AFNPHDNNVIAIGMDDSTILIYNARSSEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQ---IFVWDV--DG 917 (1092)
Q Consensus 850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~-------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~---I~iwd~--~~ 917 (1092)
+|+| |+++|++++.++.+.+|+...... ...+..|...+..+.|++++..++++..+.. .++|.+ ..
T Consensus 185 ~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (360)
T d1k32a3 185 AFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP 263 (360)
T ss_dssp EECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC
T ss_pred cccC-CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCc
Confidence 9999 899999999999999999765432 3334456666777788888888776654432 233433 33
Q ss_pred CceeeeeeeecCCCCcCCCCCceEEEEccCCC---EEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEE
Q 001363 918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT---RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 993 (1092)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~---~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 993 (1092)
+.. ..+....+ .+..+.+.+.+. +++. +.++.+++||+.+++.. .|.+.|.+++|||||++|
T Consensus 264 ~~~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~v~~~~~SpDG~~l 329 (360)
T d1k32a3 264 GDY---RMIIPLES------SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-----EVKNNLTDLRLSADRKTV 329 (360)
T ss_dssp BCE---EEEEECSS------EEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-----EEEEEEEEEEECTTSCEE
T ss_pred Cce---eEeeecCC------CceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-----EecCCcCEEEECCCCCEE
Confidence 221 11222222 233444444433 3444 35678999999887643 245579999999999999
Q ss_pred EEEECCCcEEEEEcCCCceEEeec
Q 001363 994 FTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 994 ~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
++++.||.|++||++.++...++.
T Consensus 330 ~~~~~Dg~i~v~d~~~~~~~~~~~ 353 (360)
T d1k32a3 330 MVRKDDGKIYTFPLEKPEDERTVE 353 (360)
T ss_dssp EEEETTSCEEEEESSCTTSCEECC
T ss_pred EEEECCCeEEEEECCCCCcceEEE
Confidence 999999999999999998876654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=1.5e-24 Score=246.49 Aligned_cols=361 Identities=8% Similarity=0.054 Sum_probs=242.2
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1092)
++.|.+.++..+. ..++.|++||..+++.+.++..+. .+..++|+|||+++++++.|+++++||+.+++.....
T Consensus 26 ~~~d~~~~~~V~~--~~dg~v~vwD~~t~~~~~~l~~g~----~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~ 99 (426)
T d1hzua2 26 NDLDLPNLFSVTL--RDAGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 99 (426)
T ss_dssp SCCCGGGEEEEEE--TTTTEEEEEETTTCSEEEEEECCS----SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred ccCCCCeEEEEEE--cCCCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE
Confidence 4455443332222 237789999999999999998765 5899999999999999999999999999998765443
Q ss_pred e--CC-CCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecC
Q 001363 617 D--AG-GGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1092)
Q Consensus 617 ~--~~-~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1092)
. .. ++...+.+++|+|||++++++ ..++.+++||..++........+...+....+.
T Consensus 100 ~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~------------------- 160 (426)
T d1hzua2 100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH------------------- 160 (426)
T ss_dssp EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE-------------------
T ss_pred EEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeec-------------------
Confidence 2 21 111224456778899987555 578999999999998887776655544333332
Q ss_pred CCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeEEEeecCCCcCcC
Q 001363 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLS 771 (1092)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~~w~~~~~~~~~~ 771 (1092)
+......+.+++++..++....+ +.+.+++....
T Consensus 161 ----------------------------------------~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~----- 195 (426)
T d1hzua2 161 ----------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI----- 195 (426)
T ss_dssp ----------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSS-----
T ss_pred ----------------------------------------CCCceeEEEECCCCCEEEEecCCCCeEEEEEeccc-----
Confidence 22234455667777666555443 44444432211
Q ss_pred cccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCC--CCCeE
Q 001363 772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPP--SPTAT 847 (1092)
Q Consensus 772 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~--~~~i~ 847 (1092)
........ ++...+..++|+|++++++++. +..+.+++..+++.+...... .....
T Consensus 196 -----------------~~~~~~~~---~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (426)
T d1hzua2 196 -----------------DNLTVTSI---GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 255 (426)
T ss_dssp -----------------SSCEEEEE---ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSC
T ss_pred -----------------cceeeEEe---ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccc
Confidence 10111111 2567788999999999999887 477999999999988766432 22223
Q ss_pred EEEEcCCCCCEE--EEEeCCCcEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEE-------EeCCCcEE
Q 001363 848 SLAFNPHDNNVI--AIGMDDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVS-------SGGDAQIF 911 (1092)
Q Consensus 848 ~l~~s~~d~~~l--asg~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s-------~s~Dg~I~ 911 (1092)
...+.......+ +..+.|+.+.+|+... ++....+.+|...+..++|+||+++|++ ++.|++|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~ 335 (426)
T d1hzua2 256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 335 (426)
T ss_dssp CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEE
T ss_pred eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEE
Confidence 333333122222 2234567777777654 4678889999999999999999999994 55688999
Q ss_pred EEEcCCCceeeee-eeecCCCCcCCCCCceEEEEccCCCEEEEE------eCCcEEEEEcCCceeeeeeccCCCCCEEEE
Q 001363 912 VWDVDGWGIQTCR-SLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFPISSVPISQA 984 (1092)
Q Consensus 912 iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~dg~~la~~------~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l 984 (1092)
|||+.+++..... .+.....+......+.+++|||||++++++ .++.|+|||..+++....+ .++.
T Consensus 336 vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i-~~~~------ 408 (426)
T d1hzua2 336 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV-KDPR------ 408 (426)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE-CCTT------
T ss_pred EEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEE-CCCC------
Confidence 9999987643321 111111122222468999999999987542 3678999999999987763 3332
Q ss_pred EEecCCCEEE
Q 001363 985 TFSCDCRMVF 994 (1092)
Q Consensus 985 ~fs~dg~~l~ 994 (1092)
.++|+|+|-+
T Consensus 409 ~~tp~Gk~~~ 418 (426)
T d1hzua2 409 LITPTGKFNV 418 (426)
T ss_dssp CCSEEEEEEH
T ss_pred ccCCCceEeE
Confidence 3568887744
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.90 E-value=7e-21 Score=204.79 Aligned_cols=275 Identities=12% Similarity=0.104 Sum_probs=217.8
Q ss_pred eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE-EEeCCCEEEEEEcc
Q 001363 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-VAYSKHIVQLYAYH 426 (1092)
Q Consensus 348 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la-s~~~d~~i~iwd~~ 426 (1092)
|+.++++.|++|.|||+++++.+.+.+ ....+..++|||||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~--------------------~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIP--------------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE--------------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEE--------------------CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 566788899999999999998776422 335678999999999885 55678999999999
Q ss_pred CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEE-EEE
Q 001363 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI 505 (1092)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~ 505 (1092)
+++.+. .+..|. .+..++|++++.. +++++..++.+.+|+..+++....+..+ .....+++++ ++..+ +++
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--dg~~~~~~~ 134 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeec--CCCeeeeee
Confidence 987655 455555 4688999999986 5667778889999999999998888755 4566777755 55554 566
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001363 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1092)
Q Consensus 506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1092)
..++.+.+|+..+......+.... .+..++++|+++.++++..+ ...+.+|+....+........ ..+..++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 206 (301)
T d1l0qa2 135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVE----AAPSGIA 206 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECS----SEEEEEE
T ss_pred ccccceeeeeccccceeeecccCC-CceEEEeeccccceeeeccc---ccccccccccceeeeeccccc----CCcceee
Confidence 678899999999887777666543 56789999999999888652 456888888888777766654 3577899
Q ss_pred EcCCCCEEEEEe---CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCceeeecc
Q 001363 586 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 586 ~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
+++++..+++++ .++.|++||..+++.+..+..+. .+..++|+|||++| ++++.++.|.+||+.+++.+..+.
T Consensus 207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 999999887754 34689999999999998887643 36899999999987 566778999999999998777664
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=4.7e-20 Score=198.21 Aligned_cols=268 Identities=14% Similarity=0.172 Sum_probs=204.2
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE-EEeCCCeEEEEECCCCceeeecccccCceeeeee
Q 001363 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1092)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 672 (1092)
++++.|++|.+||+.+++.+.++.... .+..++|+|||++|+ +++.++.|++||+.+++.+..+.
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g~---~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~----------- 71 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP----------- 71 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----------
T ss_pred EEECCCCEEEEEECCCCeEEEEEECCC---CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-----------
Confidence 456789999999999999999988653 357899999999875 55678999999988664332211
Q ss_pred cCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEe
Q 001363 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 752 (1092)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 752 (1092)
T Consensus 72 -------------------------------------------------------------------------------- 71 (301)
T d1l0qa2 72 -------------------------------------------------------------------------------- 71 (301)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEc
Q 001363 753 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIV 830 (1092)
Q Consensus 753 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~ 830 (1092)
....+..+++++++..++++. ++.+.+|+.
T Consensus 72 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (301)
T d1l0qa2 72 ------------------------------------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT 103 (301)
T ss_dssp ------------------------------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ------------------------------------------------ccccccccccccccccccccccccceeeeccc
Confidence 111234667777777666554 467899999
Q ss_pred CCceeeEEecCCCCCeEEEEEcCCCCCEE-EEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC-C
Q 001363 831 MTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-A 908 (1092)
Q Consensus 831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-g 908 (1092)
.+++....+.. .....+++|+| ++..+ +++..++.+.+|+..+++.+..+..+ ..+..++++|+++.+++++.+ +
T Consensus 104 ~~~~~~~~~~~-~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 180 (301)
T d1l0qa2 104 TSNTVAGTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSM 180 (301)
T ss_dssp TTTEEEEEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTT
T ss_pred ccceeeeeccc-cccceEEEeec-CCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccccc
Confidence 99988888774 45678999999 66655 56667889999999999988888754 458899999999988887765 5
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-Ee---CCcEEEEEcCCceeeeeeccCCCCCEEEE
Q 001363 909 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH---ETHLAIYEAEELTCLKQWFPISSVPISQA 984 (1092)
Q Consensus 909 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~---d~~i~lwd~~~~~~~~~~~~~h~~~v~~l 984 (1092)
.+.+|+....+... ..... ..+..++|++++..+++ +. ++.|++||+.+++.+..+. +...+.++
T Consensus 181 ~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~v 249 (301)
T d1l0qa2 181 SISVIDTVTNSVID--TVKVE-------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--VGPDPAGI 249 (301)
T ss_dssp EEEEEETTTTEEEE--EEECS-------SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--CCSSEEEE
T ss_pred ccccccccceeeee--ccccc-------CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc--CCCCEEEE
Confidence 67777777654322 12111 13678999999998876 32 3579999999999887643 34578999
Q ss_pred EEecCCCEE-EEEECCCcEEEEEcCCCceEEeec
Q 001363 985 TFSCDCRMV-FTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 985 ~fs~dg~~l-~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
+|||||++| ++++.|++|++||+.+++++.++.
T Consensus 250 a~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 250 AVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 999999987 567789999999999999998875
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=6.3e-21 Score=208.86 Aligned_cols=309 Identities=8% Similarity=0.022 Sum_probs=205.5
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
+|+++++.|++|+|||+++++.+..+ ....+...+.+++|+|||++ ++++++.++.|.+||+.+++.+..+..+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 58999999999999999998766532 23344556889999999994 34677889999999999999998887654332
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC--------CCceeEEEE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------EGESFLVEW 560 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------~~~~~i~iw 560 (1092)
.... +..++|+||+++++++.... ..+..+.+|
T Consensus 80 ~~~~---------------------------------------~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (337)
T d1pbyb_ 80 RVKS---------------------------------------LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp EEEC---------------------------------------TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred cccc---------------------------------------eeeEEEcCCCcEEEEeecCCcceeeeccccccceeec
Confidence 1110 11244555555554443210 124568899
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1092)
|..+++....+.... .+..++|+|+++++++++. .+.+||..+++....+..+.. .....++|++..+...
T Consensus 121 d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 191 (337)
T d1pbyb_ 121 DAETLSRRKAFEAPR----QITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW---EAETYAQPDVLAVWNQ 191 (337)
T ss_dssp ETTTTEEEEEEECCS----SCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTT---TTTTBCCCBCCCCCCC
T ss_pred cccCCeEEEeccccC----CceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCc---cccceecCCcceeecc
Confidence 999999988887644 5778999999999999864 477899999998888876533 2333445544332221
Q ss_pred eC-CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001363 641 AN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 641 ~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~ 719 (1092)
.. .+....+... . ..+.........++.+.+|+...
T Consensus 192 ~~~~~~~~~~~~~-------------------~----------------------~~~~~~~~~~~~~~~~~~~~~~~-- 228 (337)
T d1pbyb_ 192 HESSGVMATPFYT-------------------A----------------------RKDIDPADPTAYRTGLLTMDLET-- 228 (337)
T ss_dssp CTTTTEEEEEEEE-------------------E----------------------BTTSCTTSGGGEEEEEEEEETTT--
T ss_pred ccccceeeeeeee-------------------e----------------------eeccceeeecccCccEEEEEcCC--
Confidence 11 1111111100 0 01111122222222333333210
Q ss_pred CccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCC
Q 001363 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 799 (1092)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 799 (1092)
..+....+.
T Consensus 229 ---------------~~~~~~~~~-------------------------------------------------------- 237 (337)
T d1pbyb_ 229 ---------------GEMAMREVR-------------------------------------------------------- 237 (337)
T ss_dssp ---------------CCEEEEEEE--------------------------------------------------------
T ss_pred ---------------CcEEEEEec--------------------------------------------------------
Confidence 001111111
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001363 800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1092)
.+...+..+++++++.+++++ ++.+++||+.+++.+..+. +...+.+++|+| ||++|++++.|++|+|||..+++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 238 IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEE
Confidence 145567788899999988755 5899999999999998886 566789999999 8999999999999999999999998
Q ss_pred Eeecc
Q 001363 880 SKLEG 884 (1092)
Q Consensus 880 ~~l~~ 884 (1092)
.++.-
T Consensus 315 ~~i~~ 319 (337)
T d1pbyb_ 315 GQVDL 319 (337)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88764
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=2.3e-21 Score=212.33 Aligned_cols=317 Identities=10% Similarity=0.044 Sum_probs=219.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE-EEeCCCeEEEEECCCCceeeecccccCceee
Q 001363 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 669 (1092)
+++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.+++.+.....+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~-- 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-- 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--
Confidence 579999999999999999999999998766555678999999999875 55678999999999987776554322111
Q ss_pred eeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEE
Q 001363 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1092)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 749 (1092)
+...+..++|+|+++.+
T Consensus 80 ---------------------------------------------------------------~~~~~~~v~~s~dg~~l 96 (337)
T d1pbyb_ 80 ---------------------------------------------------------------RVKSLFGAALSPDGKTL 96 (337)
T ss_dssp ---------------------------------------------------------------EEECTTCEEECTTSSEE
T ss_pred ---------------------------------------------------------------cccceeeEEEcCCCcEE
Confidence 11223346777888877
Q ss_pred EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEE
Q 001363 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYI 829 (1092)
Q Consensus 750 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd 829 (1092)
+++..+.....|..... ...+.+|+..++....... ....+..++|+|||+++++++ +.+.+||
T Consensus 97 ~~~~~~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~-~~~~~~d 160 (337)
T d1pbyb_ 97 AIYESPVRLELTHFEVQ----------PTRVALYDAETLSRRKAFE-----APRQITMLAWARDGSKLYGLG-RDLHVMD 160 (337)
T ss_dssp EEEEEEEEECSSCEEEC----------CCEEEEEETTTTEEEEEEE-----CCSSCCCEEECTTSSCEEEES-SSEEEEE
T ss_pred EEeecCCcceeeecccc----------ccceeeccccCCeEEEecc-----ccCCceEEEEcCCCCEEEEEc-CCcceee
Confidence 77766554444332211 1234556666666554443 345677899999999998875 4578899
Q ss_pred cCCceeeEEecCCCCCeEEEEEcCCCCCEEEE-EeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC
Q 001363 830 VMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 908 (1092)
Q Consensus 830 ~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg 908 (1092)
..+++....+..+.. .....++| ++..+.. +...+...+++ .....+.......+.++
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 219 (337)
T d1pbyb_ 161 PEAGTLVEDKPIQSW-EAETYAQP-DVLAVWNQHESSGVMATPF-------------------YTARKDIDPADPTAYRT 219 (337)
T ss_dssp TTTTEEEEEECSTTT-TTTTBCCC-BCCCCCCCCTTTTEEEEEE-------------------EEEBTTSCTTSGGGEEE
T ss_pred eecCcEEEEeecCCc-cccceecC-Ccceeeccccccceeeeee-------------------eeeeeccceeeecccCc
Confidence 999998888765432 22334455 3322221 11112222111 12223333344445567
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEec
Q 001363 909 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSC 988 (1092)
Q Consensus 909 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~ 988 (1092)
.+.+|+...+........... ..+..++++|++.++++. ++.+++||+.+++.+.... +...+.+++|||
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~ 289 (337)
T d1pbyb_ 220 GLLTMDLETGEMAMREVRIMD-------VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP--LPHSYYSVNVST 289 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECS-------SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECT
T ss_pred cEEEEEcCCCcEEEEEecCCC-------cceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc--CCCCEEEEEECC
Confidence 799999988764432222211 247788999999988764 5899999999999988754 456789999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceEEeeccc
Q 001363 989 DCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus 989 dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
||++|++++.|+.|+|||+.+++.+.++...
T Consensus 290 dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence 9999999999999999999999999888743
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=4.3e-21 Score=211.08 Aligned_cols=323 Identities=10% Similarity=0.013 Sum_probs=214.8
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
++|+++++||++++.+++|.+||+.+++.++ ++. .|...+.+++|+|||++ ++++++.++.|++||+.+++.+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence 4789999999999999999999999987655 444 45567889999999995 457778899999999999998887
Q ss_pred EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC--------C
Q 001363 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------E 552 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------~ 552 (1092)
+........... .+..++|+|||++++++.... .
T Consensus 78 ~~~~~~~~~~~~--------------------------------------~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~ 119 (346)
T d1jmxb_ 78 ANLSSVPGEVGR--------------------------------------SMYSFAISPDGKEVYATVNPTQRLNDHYVV 119 (346)
T ss_dssp EESCCSTTEEEE--------------------------------------CSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred ecccccccccCC--------------------------------------ceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence 754322111000 112355666666555443210 1
Q ss_pred CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
.+..+.+|+..+++....+..+.. ...+..+.+++++..+++ ++.+.+|+..+++.+..+..+.. ...+.++|
T Consensus 120 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 192 (346)
T d1jmxb_ 120 KPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW---NRKGYSAP 192 (346)
T ss_dssp CCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC---CCTTBCCC
T ss_pred CcceEEEEecccceeeeEEEeeec-cCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCC---ccceEEec
Confidence 245688899888776655544331 234556667777765544 25689999999999888876533 45566777
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001363 633 NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 633 ~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
++..+..... ++.+.+++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 214 (346)
T d1jmxb_ 193 DVLYFWPHQSPRHEFSMLYTIA---------------------------------------------------------- 214 (346)
T ss_dssp BCCCCCCCCCTTCEEEEEEEEE----------------------------------------------------------
T ss_pred cccEEEEEecCCCceEeeeeee----------------------------------------------------------
Confidence 7765543332 33333332110
Q ss_pred eeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCce
Q 001363 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791 (1092)
Q Consensus 712 lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 791 (1092)
.+.+....+.+...++.+.+|++.. +...
T Consensus 215 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 243 (346)
T d1jmxb_ 215 -----------------------------RFKDDKQDPATADLLYGYLSVDLKT----------------------GKTH 243 (346)
T ss_dssp -----------------------------EC-------CCCEEEEEEEEEETTT----------------------CCEE
T ss_pred -----------------------------eeccCceeEeeccCCceEEEEECCC----------------------CceE
Confidence 0011111122222223334433322 1111
Q ss_pred eeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001363 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1092)
..... .+...+..+.+++++.+++...++.+.+||..+++.+..+. +...+.+++|+| |+++|++++.||.|++|
T Consensus 244 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~ 318 (346)
T d1jmxb_ 244 TQEFA---DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVF 318 (346)
T ss_dssp EEEEE---ECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEE
T ss_pred EEEee---cccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEE
Confidence 11100 25667788899999999998888999999999999988876 455789999999 89999999999999999
Q ss_pred EcCCceeeEeeccccC
Q 001363 872 NARSSEVISKLEGHSK 887 (1092)
Q Consensus 872 d~~~~~~~~~l~~h~~ 887 (1092)
|+.+++.+.++..+.+
T Consensus 319 D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 319 NPDTLEKVKNIKLPGG 334 (346)
T ss_dssp ETTTTEEEEEEECSSS
T ss_pred ECccCCEEEEEECCCC
Confidence 9999999998885444
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=1.4e-21 Score=215.05 Aligned_cols=327 Identities=9% Similarity=-0.026 Sum_probs=216.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE-EeCCCeEEEEECCCCceeeeccc
Q 001363 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 584 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
++|+++++++++++.+++|.+||+.+++.+.++..+.. ..+..++|+|||+++++ +..++.|.+||+.+++....+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 46889999999999999999999999999998875433 24679999999998755 45789999999998876654432
Q ss_pred ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEE
Q 001363 663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742 (1092)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 742 (1092)
..... .+...+..++|
T Consensus 81 ~~~~~----------------------------------------------------------------~~~~~~~~v~~ 96 (346)
T d1jmxb_ 81 SSVPG----------------------------------------------------------------EVGRSMYSFAI 96 (346)
T ss_dssp CCSTT----------------------------------------------------------------EEEECSSCEEE
T ss_pred ccccc----------------------------------------------------------------ccCCceEEEEE
Confidence 11110 01112334667
Q ss_pred ecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC
Q 001363 743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG 822 (1092)
Q Consensus 743 s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd 822 (1092)
+|||++++++..+.....|..... ...+.+|+..++......... .....+..+.+++++++++. +
T Consensus 97 s~DG~~l~v~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~ 162 (346)
T d1jmxb_ 97 SPDGKEVYATVNPTQRLNDHYVVK----------PPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVA--G 162 (346)
T ss_dssp CTTSSEEEEEEEEEEECSSCEEEC----------CCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEE--S
T ss_pred ecCCCEEEEEecCCcceeeeeccC----------cceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEe--C
Confidence 777776666554322111111000 011222222222211111100 12334556677888876654 4
Q ss_pred CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEE-EEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEE
Q 001363 823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNIL 901 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 901 (1092)
+.+.+|++.+++.+..+..+ .....++++| ++..+ +.+..++.+.+++.. ..+.+....+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 223 (346)
T d1jmxb_ 163 PDIYKMDVKTGKYTVALPLR-NWNRKGYSAP-DVLYFWPHQSPRHEFSMLYTI-----------------ARFKDDKQDP 223 (346)
T ss_dssp SSEEEECTTTCCEEEEECST-TCCCTTBCCC-BCCCCCCCCCTTCEEEEEEEE-----------------EEC-------
T ss_pred CcceEEEccCCCEEEEEecC-CCccceEEec-cccEEEEEecCCCceEeeeee-----------------eeeccCceeE
Confidence 56899999999998888754 3456677888 55444 444444555554321 2223445566
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCE
Q 001363 902 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI 981 (1092)
Q Consensus 902 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v 981 (1092)
+++..++.+.+|++.++......... +. ..+..+.+++++.+++...++.+.+||..+++.+..... ...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~ 294 (346)
T d1jmxb_ 224 ATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL--DHTY 294 (346)
T ss_dssp CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC--SSCC
T ss_pred eeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC--CCCE
Confidence 67777888999999987644322211 11 247889999999999887788999999999998887543 4568
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001363 982 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 982 ~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
.+++|||||++|++++.|+.|++||+.+++.+.++.
T Consensus 295 ~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 999999999999999999999999999999998887
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.84 E-value=8.9e-18 Score=186.50 Aligned_cols=333 Identities=11% Similarity=0.023 Sum_probs=222.7
Q ss_pred cCCCCcEEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE------
Q 001363 393 RDPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC------ 461 (1092)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~------ 461 (1092)
..+..++..++++|||+.+++.. ..+.|.+||..+++.+. ++..+.. ..++|+|||++ ++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~--~~~a~SpDG~~--l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFL--PNPVAAHSGSE--FALASTSFSR 89 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCC--ccEEEcCCCCE--EEEEeecCCc
Confidence 35788999999999999998752 34579999999997665 4545543 37999999994 5444
Q ss_pred ----eCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001363 462 ----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1092)
Q Consensus 462 ----~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1092)
..++.|.+||..+++.+..+..+......+...+ ..+.|
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~ 132 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNAN 132 (373)
T ss_pred ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEEE
Confidence 3467899999999999888776655544332211 23678
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEE
Q 001363 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTI 616 (1092)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~ 616 (1092)
++|++.++....+ .+..+.+|+..+++..... ....++.++|+++.+ ++.+.|+.+.+|+...+......
T Consensus 133 s~dg~~~~v~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~ 203 (373)
T d2madh_ 133 TPNNADLLFFQFA--AGPAVGLVVQGGSSDDQLL-------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL 203 (373)
T ss_pred EeCCCcEEEEEEc--CCCceEEeeccCCeEEEEe-------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEE
Confidence 8888887766543 2456888988877654433 345678899998766 56889999999999988877665
Q ss_pred eCCC----CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecC
Q 001363 617 DAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1092)
Q Consensus 617 ~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1092)
.... .........+++++. ++..+.++.+.+|+...........
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~------------------------------- 251 (373)
T d2madh_ 204 VGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAP------------------------------- 251 (373)
T ss_pred eeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEe-------------------------------
Confidence 4321 111233455556554 4455677889999877653221110
Q ss_pred CCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCc
Q 001363 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1092)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~ 772 (1092)
|+. +........+.|.+...++.+.++...
T Consensus 252 --------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~------------- 281 (373)
T d2madh_ 252 --------------------IDA-----------------LSGGRKADTWRPGGWQQVAYLKSSDGI------------- 281 (373)
T ss_pred --------------------ecc-----------------ccCcEEeeeeccCcceeeEEecCCCeE-------------
Confidence 000 011111222233332222222222111
Q ss_pred ccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEE
Q 001363 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF 851 (1092)
Q Consensus 773 ~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 851 (1092)
..+.+++..++... ++.+.+||..+++.+..+. +...+.+++|
T Consensus 282 -----------------------------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~ 325 (373)
T d2madh_ 282 -----------------------------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISV 325 (373)
T ss_pred -----------------------------------EEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEE
Confidence 11223333444443 6889999999999998876 5677899999
Q ss_pred cCCCCC--EEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCC
Q 001363 852 NPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 897 (1092)
Q Consensus 852 s~~d~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd 897 (1092)
+| ||+ ++++++.|+.|++||+.+++.+..+.+|....+.|++.++
T Consensus 326 sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 326 AQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 99 776 4578899999999999999999999988888888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.82 E-value=1.3e-17 Score=185.20 Aligned_cols=306 Identities=12% Similarity=0.022 Sum_probs=213.2
Q ss_pred ccCCCCceEEeecCCCceEEEEE----cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg----~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
..+..++..++++|||++++++. +..+.|.+||..+++.+.. +..+.. ..++|||
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~Sp 75 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAH 75 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcC
Confidence 46777999999999999766542 2346799999999998865 333433 3699999
Q ss_pred CCCEEEEEe----------CCCEEEEEEccCCCcccceEEEcccccc-------eeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 407 DGSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHVGN-------VNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 407 dg~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~~~-------v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
||++|++++ .++.|.+||..+++.+. .+..+... ...+.|++|++.+++.....++.+.+
T Consensus 76 DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~ 152 (373)
T d2madh_ 76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGL 152 (373)
T ss_pred CCCEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEE
Confidence 999999875 35789999999987655 33333332 24589999999755666667788999
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEccCCCE
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGRR 543 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg~~ 543 (1092)
|+..+++...... ...++.+++.+. ..+++.+.||.+.+|+............. ........+++++.+
T Consensus 153 ~~~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T d2madh_ 153 VVQGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI 227 (373)
T ss_pred eeccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE
Confidence 9988877655443 345666655432 46688999999999999887665543221 122344566666666
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEe--ecc-------ccCCceEEEEEcCCCCEEE----------EEeCCCcEEE
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQ--GLQ-------LQHNSVSVVHFDTAKDQIL----------AAGDDHVIKI 604 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~-------~~~~~v~~~~~~~~~~~l~----------~~s~dg~i~i 604 (1092)
++... ++.+.+|+..++....... ... ........+++++++..++ ....++.+.+
T Consensus 228 ~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~ 302 (373)
T d2madh_ 228 VWPVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred EEecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence 55432 4558888877765432221 111 0012234455666655444 4556778999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCE--EEEEeCCCeEEEEECCCCceeeecccccCceeeeeec
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN 673 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 673 (1092)
||..+++.+..+.... .+..++|+|||+. +++++.|+.|++||..+++.+..+..+...-..+++.
T Consensus 303 ~d~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~ 370 (373)
T d2madh_ 303 VTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM 370 (373)
T ss_pred EECCCCcEEEEecCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence 9999999998886543 4789999999984 4678889999999999999999988776666655554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=1.3e-17 Score=183.75 Aligned_cols=298 Identities=14% Similarity=0.097 Sum_probs=200.0
Q ss_pred CceEEeecCCCceEEEEE----cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 336 SPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg----~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
++.-.+.+|||++++++. ..+++|.+||..+++.+.+ +..+.. ..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g~~--~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFL--PNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSS--CEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECCCC--CceEEcCCCCEE
Confidence 455567799999765553 2356799999999988764 222333 369999999999
Q ss_pred EEEe----------CCCEEEEEEccCCCcccceEEEcccc----cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001363 412 GVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 412 as~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
++.+ .++.|++||..+++.+........+. .....++|++|+++++++..+.+..+.+||..+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 8753 47889999999987665332211121 234568999999965555556778999999999999
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec------CCCCceEEEEEccCCCEEEEEecCC
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------APGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+..+..+....... . .....++.+.||...++............ .+...+....+++++..++.++.
T Consensus 142 ~~~~~~~~~~~~~~----~-~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (355)
T d2bbkh_ 142 KRMLDVPDCYHIFP----T-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 214 (355)
T ss_dssp EEEEECCSEEEEEE----E-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred eeEEecCCcceEee----c-CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence 88887554322111 1 11234555566665555544433322211 12223455677888888887764
Q ss_pred CCceeEEEEeCCCCeEEE--EEeecc-------ccCCceEEEEEcCCCCEEEEEeCC----------CcEEEEECCCCce
Q 001363 552 EGESFLVEWNESEGAIKR--TYQGLQ-------LQHNSVSVVHFDTAKDQILAAGDD----------HVIKIWDMNKVQL 612 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~--~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~d----------g~i~iwd~~~~~~ 612 (1092)
++.+++|+...++... ....+. ........+++++++..++....+ ..|.+||..+++.
T Consensus 215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 5679999998775432 222111 001223457899999988876533 4699999999999
Q ss_pred EEEEeCCCCCCCCceEEEccCCC--EEEEEeCCCeEEEEECCCCceeeecccccCc
Q 001363 613 LTTIDAGGGLPENPRICFNKNGT--LLAVIANENRIKILETPESNSVDAAGVLSDN 666 (1092)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 666 (1092)
+..+.... .+.+++|+|||+ ++++++.|+.|++||..+++.+..+..+...
T Consensus 293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~ 345 (355)
T d2bbkh_ 293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 345 (355)
T ss_dssp EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCC
Confidence 88886543 368999999998 4556677999999999999998887755443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=1e-17 Score=184.62 Aligned_cols=330 Identities=12% Similarity=0.044 Sum_probs=200.5
Q ss_pred EEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEE--------EeCCC
Q 001363 399 VNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT--------CGDDK 465 (1092)
Q Consensus 399 V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s--------~~~d~ 465 (1092)
+...+.+|||+++++.. .+..|.+||..+++.+. ++..+ .+..++|||||+++++++ ++.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTD 78 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence 33446789999998763 45679999999997665 34333 344799999999644432 34578
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
.|++||..+++.+..+..+......+.. ....++|+++|++++
T Consensus 79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~s~dg~~~~ 121 (355)
T d2bbkh_ 79 YVEVFDPVTLLPTADIELPDAPRFLVGT-------------------------------------YPWMTSLTPDGKTLL 121 (355)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSC-------------------------------------CGGGEEECTTSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCcceeecCC-------------------------------------CCceEEEecCCCeeE
Confidence 8999999999988877655433321110 112367899999888
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeecccc----CCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCC
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
.+... ....+.+|+..+++.+..+...... ......+.+++++..++... .++.+.+++...... .
T Consensus 122 v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------~ 192 (355)
T d2bbkh_ 122 FYQFS--PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------E 192 (355)
T ss_dssp EEECS--SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------T
T ss_pred EecCC--CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------e
Confidence 77543 3567899999999988877653300 01122334444444443322 223333333322211 1
Q ss_pred CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc--cccCceeeeeecCCCccccccccCCceeecCCCCCCC
Q 001363 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG--VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 698 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 698 (1092)
....+....+++++..++.++.++.+++|+...+....... .+........+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 246 (355)
T d2bbkh_ 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW-------------------------- 246 (355)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE--------------------------
T ss_pred ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeee--------------------------
Confidence 22235567888889999999999999999988653221100 00000000000
Q ss_pred ccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCccccccc
Q 001363 699 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKV 778 (1092)
Q Consensus 699 ~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~ 778 (1092)
.......+++++++..++....++...
T Consensus 247 ----------------------------------~p~~~~~~~~~~d~~~~~~~~~~~~~~------------------- 273 (355)
T d2bbkh_ 247 ----------------------------------RPGGWQQVAYHRALDRIYLLVDQRDEW------------------- 273 (355)
T ss_dssp ----------------------------------EECSSSCEEEETTTTEEEEEEEECCTT-------------------
T ss_pred ----------------------------------eccceEEEEEeCCCCeEEEEeccCCce-------------------
Confidence 000111234444444443332221000
Q ss_pred CCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-
Q 001363 779 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN- 857 (1092)
Q Consensus 779 ~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~- 857 (1092)
......+.|.+||..+++.+..+. +...+.+++|+| |++
T Consensus 274 --------------------------------------~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~ 313 (355)
T d2bbkh_ 274 --------------------------------------RHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKP 313 (355)
T ss_dssp --------------------------------------CTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECC-SSSC
T ss_pred --------------------------------------eecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcC-CCCe
Confidence 000012468999999999888776 345688999999 776
Q ss_pred -EEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCC
Q 001363 858 -VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 898 (1092)
Q Consensus 858 -~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 898 (1092)
+++++..|+.|++||+.+++.+.++.++......+.+.++|
T Consensus 314 ~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 314 LLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred EEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence 45677889999999999999999998776666666665543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=6.1e-16 Score=168.28 Aligned_cols=284 Identities=14% Similarity=0.149 Sum_probs=188.4
Q ss_pred eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEcc
Q 001363 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH 426 (1092)
Q Consensus 348 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~ 426 (1092)
.++++++.|++|+||++++...+.... ...|.+.|..++|||||++|++++ .|+.|++|++.
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~-----------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~ 67 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQ-----------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEE-----------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEEE-----------------EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence 356888899999999998665443211 224788999999999999996665 58999999998
Q ss_pred CCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-CCCcEEEEECCCCceeEE--EecCCcCeEEEeecccCCccEEE
Q 001363 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIF 503 (1092)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~ 503 (1092)
.+...........+...+..++|+|||+ +|++++ .++.|.+|+......... ...+...+.++.+++ ++++++
T Consensus 68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~ 143 (333)
T d1ri6a_ 68 PDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLW 143 (333)
T ss_dssp TTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEE
T ss_pred CCCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeee--cceeee
Confidence 7654433222223445678899999999 455555 577899999877655433 345666777788854 566666
Q ss_pred EEe-cCCeEEEEEcCCCCceEE------ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeE--EEEEe
Q 001363 504 SIS-VDGKIKAWLYDSLGARVD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQ 572 (1092)
Q Consensus 504 s~~-~dg~i~vwd~~~~~~~~~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~ 572 (1092)
.++ .+..|.+|+......... ..........++|++++..++..... .....+|+.. .... .....
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEESSCTTSCCEEEEEEE
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccc---cCceEEEeecccccceeeeeeee
Confidence 666 456799999877554331 22234456889999999998876543 3335555543 2222 11221
Q ss_pred e---ccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEe-CCCCCCCCceEEEccCCCEEEEEeC-CCeE
Q 001363 573 G---LQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIAN-ENRI 646 (1092)
Q Consensus 573 ~---~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i 646 (1092)
. ..........+++++++++++.. ..++.+.+|++.......... .......+..++|+|||++|++++. ++.|
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v 300 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI 300 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence 1 11122456778999999987765 467889999887543322221 1111234678999999999887754 6899
Q ss_pred EEEEC--CCCc
Q 001363 647 KILET--PESN 655 (1092)
Q Consensus 647 ~iw~~--~~~~ 655 (1092)
.+|++ .++.
T Consensus 301 ~v~~id~~tG~ 311 (333)
T d1ri6a_ 301 SVYEIVGEQGL 311 (333)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCc
Confidence 99955 4443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=4.5e-16 Score=169.29 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=111.7
Q ss_pred EEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC
Q 001363 501 FIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578 (1092)
Q Consensus 501 ~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 578 (1092)
.+++++.|++|++|+++...... ....+...+..++|+|||++|++++. .++.|++|++........+..+....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeecccC
Confidence 45778899999999998765433 22356678899999999999977663 25679999987665444444433233
Q ss_pred CceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC-CCeEEEEECCCC
Q 001363 579 NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETPES 654 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~ 654 (1092)
..+..++|+|||+++++++ .++.+.+|+..............+...+.++.++|+++++++++. +..+.+|+....
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~ 160 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 160 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence 5677899999999999987 477899999887766655544344456788999999998888775 456788876543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=1.5e-14 Score=159.39 Aligned_cols=291 Identities=11% Similarity=0.012 Sum_probs=194.3
Q ss_pred CCCCceEEeecCCCceEEE--EEcCCCc--EEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 333 GSSSPMSMDFHPVQHTLLL--VGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~lla--sg~~dg~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
+.+....++.++|++...+ ....+++ |.+||..+++.+.. ..++... .++|+|||
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg 76 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG 76 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence 4556677788899885333 3444554 66779999987764 3334444 58999999
Q ss_pred CEEEEEe----------CCCEEEEEEccCCCcccceEEEcccc-------cceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 409 SLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV-------GNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 409 ~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
++|++.+ .|+.|.+||..+++.+.. +..+. .....++|+|||++ ++++...++.+.+||
T Consensus 77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d 152 (368)
T d1mdah_ 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLS 152 (368)
T ss_dssp SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEE
T ss_pred CEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEE
Confidence 9999864 367899999999876553 32221 12346899999996 334445689999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe------cCCCCceEEEEEccCCCEEE
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------DAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+.+++.+..+..+..... .+. ....++..+.||.+.+|++......... ..+...+....+.+++..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~----~~~-~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (368)
T d1mdah_ 153 VPGASDDQLTKSASCFHI----HPG-AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227 (368)
T ss_dssp ETTTEEEEEEECSSCCCC----EEE-ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred CCCCcEeEEeeccCcceE----ccC-CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE
Confidence 999999988876654422 112 2246777888999999988766544322 12223445677888887766
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEE--eecc-------ccCCceEEEEEcCCCCEEEEEeCC---------CcEEEEEC
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTY--QGLQ-------LQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDM 607 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~--~~~~-------~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~ 607 (1092)
..+ +.+++++...+...... .... ........+++++++..++....+ ..|.+||.
T Consensus 228 ~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~ 301 (368)
T d1mdah_ 228 AVA------SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp CBS------SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred ecC------CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence 542 22555665544433221 1110 001123357789998887765322 35899999
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCE--EEEEeCCCeEEEEECCCCceeeeccc
Q 001363 608 NKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
.+++.+..+.... .+..++|+|||+. ++++..++.|++||..+++.+..+..
T Consensus 302 ~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 302 SVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp SSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred CCCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence 9999888776442 3678999999973 45666789999999999988887764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.59 E-value=3e-13 Score=154.38 Aligned_cols=220 Identities=13% Similarity=0.089 Sum_probs=138.7
Q ss_pred EEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC--
Q 001363 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-- 416 (1092)
Q Consensus 339 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-- 416 (1092)
.+.|.+|+. ++.. .|+.+.+||+.+++.... +....+..|...|.++.|||||++||+++.
T Consensus 21 ~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~ 83 (470)
T d2bgra1 21 SLRWISDHE-YLYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (470)
T ss_dssp CCEECSSSE-EEEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred CCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence 477999998 4553 578999999999986542 111225567789999999999999998853
Q ss_pred -------CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC----
Q 001363 417 -------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG---- 485 (1092)
Q Consensus 417 -------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---- 485 (1092)
++.+.+||+++++.. .+..|...+..+.|||||+ .++.. .++.+.+|+..+++..+....+.
T Consensus 84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~ 156 (470)
T d2bgra1 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (470)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence 467899999997643 3668889999999999999 46554 47789999999887765432221
Q ss_pred --------------cCeEEEeecccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 486 --------------APVYSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 486 --------------~~v~~i~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
+....+.| ++||+.|+....|.+ +..|.+...... .........+.+...+..
T Consensus 157 ~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~------- 224 (470)
T d2bgra1 157 YNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV------- 224 (470)
T ss_dssp EESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC-------
T ss_pred cccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc-------
Confidence 22334456 567888988876644 544433211100 000111222222222211
Q ss_pred CCCceeEEEEeCCCCeEEEEEeecc--------ccCCceEEEEEcCCCCEEEE
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQ--------LQHNSVSVVHFDTAKDQILA 595 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~ 595 (1092)
.....+.+|++.++........+. .....+..+.|.+++..++.
T Consensus 225 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 276 (470)
T d2bgra1 225 -NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ 276 (470)
T ss_dssp -CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred -CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence 124457888887765443322211 11234567888888765554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=1.4e-13 Score=151.52 Aligned_cols=314 Identities=13% Similarity=-0.010 Sum_probs=192.9
Q ss_pred eEEEEEccCCCEEE-EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----------CCC
Q 001363 532 CTRMAYSANGRRLF-SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDH 600 (1092)
Q Consensus 532 i~~~~~s~dg~~l~-~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg 600 (1092)
...++..++++... +......+...+++||..+++.+....++. .. .++|+|||+.+++.+ .|+
T Consensus 22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF---LS--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT---TC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC---CC--cceECCCCCEEEEEcccCccccccccCC
Confidence 33445677888643 323344556779999999999999888765 33 588999999998754 367
Q ss_pred cEEEEECCCCceEEEEeCCCCC-----CCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeeecccccCceeeeeecC
Q 001363 601 VIKIWDMNKVQLLTTIDAGGGL-----PENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1092)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 674 (1092)
.|++||..+++.+..+..+... .....++|+|||++++++. .++.+.+||+.+++....+..+..... .|
T Consensus 97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~ 172 (368)
T d1mdah_ 97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HP 172 (368)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC----EE
T ss_pred eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE----cc
Confidence 8999999999999888654321 2245799999999998876 579999999999887776654332211 10
Q ss_pred CCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec
Q 001363 675 ISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 754 (1092)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 754 (1092)
.+ ....+.+ ++||+.++....++....|... ......+...+....+.+++..+.. .
T Consensus 173 ~~-------~~~~v~~----~~Dg~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~--~ 229 (368)
T d1mdah_ 173 GA-------AATHYLG----SCPASLAASDLAAAPAAAGIVG----------AQCTGAQNCSSQAAQANYPGMLVWA--V 229 (368)
T ss_dssp EE-------TTEEECC----CCTTSCEEEECCSSCCCCEECC----------CCSCTTSCBCSCCEEETTTTEEEEC--B
T ss_pred CC-------CceEEEE----cCCCCEEEEEecCCceeeeeee----------cccccccccceeecccccCcEEEEe--c
Confidence 00 0001111 3444444444333333333211 1111123333445566777654433 3
Q ss_pred CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--C--------Ce
Q 001363 755 NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--G--------GV 824 (1092)
Q Consensus 755 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--d--------g~ 824 (1092)
++.+.++++.... +.+++...+......... ........+++++++..+.+.. + ..
T Consensus 230 ~~~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~ 295 (368)
T d1mdah_ 230 ASSILQGDIPAAG------------ATMKAAIDGNESGRKADN--FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295 (368)
T ss_dssp SSCCEEEECCSSC------------CEEECCCCSSCTHHHHTT--EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred CCCEEEEeecCCc------------eEEEeecccccceeeeee--ecCCCceeEEEcCCCCEEEEEecCCCceeecCCce
Confidence 4555665554332 122222221110000000 0112234588999998876653 1 24
Q ss_pred EEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC--EEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEE
Q 001363 825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894 (1092)
Q Consensus 825 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 894 (1092)
|.+||..+++.+.++. +...+.+++|+| |++ +++++..|+.|++||..+++.+..+..... -..|++
T Consensus 296 v~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~ 364 (368)
T d1mdah_ 296 TSSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV 364 (368)
T ss_dssp EEEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred EEEEECCCCcEeEEec-CCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence 9999999999888776 345788999999 665 356777889999999999999999885433 344443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.56 E-value=6.2e-14 Score=160.24 Aligned_cols=377 Identities=11% Similarity=0.022 Sum_probs=214.2
Q ss_pred EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc--ccCCceEEEEEcCCCCEEEEEeC---------CCcE
Q 001363 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGD---------DHVI 602 (1092)
Q Consensus 534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~---------dg~i 602 (1092)
.+.|.+|++++... ++.+.+||..+++....+..+. .+...|.++.|+||+++|+.++. ++.+
T Consensus 21 ~~~W~~d~~~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~ 94 (470)
T d2bgra1 21 SLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (470)
T ss_dssp CCEECSSSEEEEES------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred CCEeCCCCEEEEEc------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence 46788999877642 3459999999999877666543 22357899999999999998753 5678
Q ss_pred EEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccc
Q 001363 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1092)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (1092)
.+||+.+++... +..+ ...+..+.|||||+.+|... ++.+++|+..++............+
T Consensus 95 ~l~d~~~~~~~~-l~~~--~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~--------------- 155 (470)
T d2bgra1 95 DIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI--------------- 155 (470)
T ss_dssp EEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT---------------
T ss_pred EEEECCCCcccc-cccC--CccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCc---------------
Confidence 999999987543 3332 34578999999999999865 5789999998886555433211111
Q ss_pred ccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCC-eeEEE
Q 001363 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMW 761 (1092)
Q Consensus 683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-~i~~w 761 (1092)
...+..| |... ....+....+.|||||+.++....|. .+..|
T Consensus 156 ------------------~~~g~~d-----~~~~--------------~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~ 198 (470)
T d2bgra1 156 ------------------IYNGITD-----WVYE--------------EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI 198 (470)
T ss_dssp ------------------EEESBCC-----HHHH--------------HHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred ------------------ccccccc-----eeee--------------eeecCCccccEECCCCCccceeEecCCcCceE
Confidence 0111100 0000 00122334578999999999887663 35555
Q ss_pred eecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--
Q 001363 762 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI-- 839 (1092)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~-- 839 (1092)
.+..... .. ........+.+...+... .+..+.+|++.++......
T Consensus 199 ~~~~~~~-----------------~~------------~~~~~~~~~~~~~~g~~~---~~~~~~v~~~~~~~~~~~~~~ 246 (470)
T d2bgra1 199 EYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTNATS 246 (470)
T ss_dssp EEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEEGGGCCSSSCCCE
T ss_pred EEEeecc-----------------CC------------CCCCeeeeeccccccccC---CcceEEEEECCCcceeeeccc
Confidence 5432110 00 011111112221111100 1235778888766543221
Q ss_pred ---------cCCCCCeEEEEEcCCCCCEEEEEe-CCC---c--EEEEEcCCceeeEeec-------------cccCCeEE
Q 001363 840 ---------MPPSPTATSLAFNPHDNNVIAIGM-DDS---T--ILIYNARSSEVISKLE-------------GHSKRVTG 891 (1092)
Q Consensus 840 ---------~~~~~~i~~l~~s~~d~~~lasg~-~dg---~--v~iwd~~~~~~~~~l~-------------~h~~~V~~ 891 (1092)
......+..+.|.+ ++.+++... ..+ . +..+|..++....... .|....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~-- 323 (470)
T d2bgra1 247 IQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE-- 323 (470)
T ss_dssp EEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC--
T ss_pred cccCCccccCCCCceEEEEEEcC-CCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCC--
Confidence 11223467788888 666555432 222 2 3344555555432221 122222
Q ss_pred EEEcCCC--CEEEEEeCCCcEEEE--EcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-E-e-C---CcEEE
Q 001363 892 LVFSDAL--NILVSSGGDAQIFVW--DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-H-E---THLAI 961 (1092)
Q Consensus 892 l~~spdg--~~l~s~s~Dg~I~iw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~-d---~~i~l 961 (1092)
..|++++ .+++.+..||...|| +..++. ......+.. .|..+ ++++++.+.. + . + ..-.|
T Consensus 324 ~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-----~~~lt~g~~----~v~~~-~~~d~~~iyf~a~~~~~~p~~~~l 393 (470)
T d2bgra1 324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-----CTFITKGTW----EVIGI-EALTSDYLYYISNEYKGMPGGRNL 393 (470)
T ss_dssp CEECTTSSEEEEEEECTTSCEEEEEEETTCSC-----CEESCCSSS----CEEEE-EEECSSEEEEEESCGGGCTTCBEE
T ss_pred ceeeecCCCcEEEEeccCcCceeEEEeccCCc-----eeeeccCCe----eEEEE-EEECCCEEEEEEecCCCCcceEEE
Confidence 3344443 445667778766555 444433 222223333 35555 5555665533 3 2 2 12244
Q ss_pred E--EcCCceeeee---eccCCCCCEEEEEEecCCCEEEE-EE--CCCcEEEEEcCCCceEEeec
Q 001363 962 Y--EAEELTCLKQ---WFPISSVPISQATFSCDCRMVFT-SF--VDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 962 w--d~~~~~~~~~---~~~~h~~~v~~l~fs~dg~~l~t-~~--~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
| ++..+..... ...+|...+.+++|||||++++. ++ ..-.+.+|+..+|+.+..+.
T Consensus 394 y~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le 457 (470)
T d2bgra1 394 YKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (470)
T ss_dssp EEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence 4 4443332222 23468889999999999999773 33 33458999999999987775
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.55 E-value=2.7e-15 Score=162.43 Aligned_cols=329 Identities=9% Similarity=-0.005 Sum_probs=199.0
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001363 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 534 (1092)
++.++|++.+|.|+|||+.+++.++++.. |++.+. . ..|..+.+.+++. ..........|......
T Consensus 11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~--~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~ 76 (441)
T d1qnia2 11 YYGFWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSA--T-GWGITNESKEILG--GDQQYLNGDCHHPHISM 76 (441)
T ss_dssp EEEEEECBTTCCEEEEEETTTEEEEEECS---------SSBCTT--T-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEE
T ss_pred EEEEEeCCCCCcEEEEeCCCCcEEEEEEe---------EcCCCC--E-EEEECCccceEEe--cccccccCcccCCCcce
Confidence 34688999999999999999999988852 333221 1 1111111111110 00111111223333444
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE--EEEEeCCC------------
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ--ILAAGDDH------------ 600 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~s~dg------------ 600 (1092)
...+|||++|++... .+.+|.++|+.+++....+.-.. ...+..++|+|+++. ++..+++.
T Consensus 77 t~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~ 151 (441)
T d1qnia2 77 TDGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL 151 (441)
T ss_dssp ETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred ecccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence 556899999988763 36689999999999888776433 367899999999884 44444432
Q ss_pred -----cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe-EEEEECCCCceeeecccccCceeeeeecC
Q 001363 601 -----VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR-IKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1092)
Q Consensus 601 -----~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 674 (1092)
.+..+|..+.+...++...+. ...++|+|+|+++++.+.+.. +..++..+....
T Consensus 152 ~~~~~~~~~iD~~t~~v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~----------------- 211 (441)
T d1qnia2 152 DNSYTMFTAIDAETMDVAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR----------------- 211 (441)
T ss_dssp GGEEEEEEEEETTTCSEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB-----------------
T ss_pred ccccceEEeecCccceeeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCcceE-----------------
Confidence 245688888888887776543 678999999999998876532 111111111000
Q ss_pred CCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec
Q 001363 675 ISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 754 (1092)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 754 (1092)
..+.+.+. -..++++++|+++.. +.
T Consensus 212 ---------------------------------d~i~v~n~---------------------p~~~~~~~dGk~~~v-~~ 236 (441)
T d1qnia2 212 ---------------------------------DWVVVFNV---------------------ERIAAAVKAGNFKTI-GD 236 (441)
T ss_dssp ---------------------------------CEEEEEEH---------------------HHHHHHHHTTCCBCC-TT
T ss_pred ---------------------------------EEEEeCCc---------------------cceEEEecCCCEEEe-CC
Confidence 00111110 011234556664432 23
Q ss_pred CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC
Q 001363 755 NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT 832 (1092)
Q Consensus 755 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~ 832 (1092)
++.+.++.... ...+.... -......+.++|||+++++++ ++++.+||+.+
T Consensus 237 ~~v~vvd~~~~----------------------~~v~~~IP-----vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 237 SKVPVVDGRGE----------------------SEFTRYIP-----VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp CCCCEEECSSS----------------------CSSEEEEC-----CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred CCcEEEEcccC----------------------CceEEEEe-----CCCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence 34444433211 11122221 122345789999999998876 69999999875
Q ss_pred ceee--------EEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc----------eeeEee-----cccc
Q 001363 833 FKTI--------LTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS----------EVISKL-----EGHS 886 (1092)
Q Consensus 833 ~~~~--------~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~----------~~~~~l-----~~h~ 886 (1092)
.+.. ..+. ...-.....+|++ ++..+.+...|..|..|++... ..+..+ .||.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~ 368 (441)
T d1qnia2 290 LDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN 368 (441)
T ss_dssp HHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEE
T ss_pred hhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCC
Confidence 3311 1111 1112345568999 8888999999999999998521 233444 5788
Q ss_pred CCeEEEEEcCCCCEEEEEe
Q 001363 887 KRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s 905 (1092)
..+.+.+++|||++|++++
T Consensus 369 ~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 369 HASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EETTTTSTTCCCCEEEEEE
T ss_pred ccccccccCCCCcEEEecC
Confidence 8888889999999999994
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.52 E-value=2.3e-15 Score=163.06 Aligned_cols=360 Identities=10% Similarity=0.002 Sum_probs=218.7
Q ss_pred CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Q 001363 345 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 424 (1092)
Q Consensus 345 dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd 424 (1092)
|+-+.+++|+.+|.|+||++.+++.+.. + + .|+|++... .|..+.+.+++.
T Consensus 9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~-------------------I-----p----Vfspd~~~g-~g~~~es~~vl~ 59 (441)
T d1qnia2 9 DEYYGFWSGGHQGEVRVLGVPSMRELMR-------------------I-----P----VFNVDSATG-WGITNESKEILG 59 (441)
T ss_dssp CSEEEEEECBTTCCEEEEEETTTEEEEE-------------------E-----C----SSSBCTTTC-TTTSHHHHHHHC
T ss_pred CCEEEEEeCCCCCcEEEEeCCCCcEEEE-------------------E-----E----eEcCCCCEE-EEECCccceEEe
Confidence 4446688899999999999999988764 1 1 278887642 232222222221
Q ss_pred ccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcCeEEEeecccCCccEEE
Q 001363 425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIF 503 (1092)
Q Consensus 425 ~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~ 503 (1092)
++.... .-..|.-......++|||++ ++++...+++|.++|++++++...+.- +...+..++|++.+.-.+++
T Consensus 60 --~~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~ 133 (441)
T d1qnia2 60 --GDQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF 133 (441)
T ss_dssp --SSSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred --cccccc---cCcccCCCcceecccCCCCE-EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEE
Confidence 111111 12235555667778999995 456677889999999999998887753 56678889997655544666
Q ss_pred EEecCC-----------------eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 504 SISVDG-----------------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 504 s~~~dg-----------------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
..+.+. .+..+|..+.+........ .....+.++|||+++++.+.+.+ .+..++..+..
T Consensus 134 ~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse---~~~~id~~t~~ 209 (441)
T d1qnia2 134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSE---RAVDLAGTMRN 209 (441)
T ss_dssp EEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTT---CCSSHHHHTCS
T ss_pred eccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCC---ceEEEeccCcc
Confidence 555442 2355777776665544433 34677999999999988775332 13333444443
Q ss_pred EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE-EeCCCe
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENR 645 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~ 645 (1092)
....+.... ....+.+.|+|+++.. +.++.+.+++......+..+..... ...+.++|||+++++ +..+++
T Consensus 210 ~~d~i~v~n----~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~t 281 (441)
T d1qnia2 210 DRDWVVVFN----VERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPT 281 (441)
T ss_dssp SBCEEEEEE----HHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSB
T ss_pred eEEEEEeCC----ccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCc
Confidence 333332221 1223456788887655 4467888888888788888876533 578999999998765 456899
Q ss_pred EEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccc
Q 001363 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~ 725 (1092)
+.+||+.... ..+.+......++...+
T Consensus 282 vsv~d~~k~~--~~~~~~~~~~~~~~~~~--------------------------------------------------- 308 (441)
T d1qnia2 282 VSVIAIDKLD--DLFEDKIELRDTIVAEP--------------------------------------------------- 308 (441)
T ss_dssp EEEEEGGGHH--HHTTTSSCGGGGEEECC---------------------------------------------------
T ss_pred EEEEEeehhh--hHhhccCCcceEEEeec---------------------------------------------------
Confidence 9999987421 11111111111111100
Q ss_pred cccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001363 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1092)
Q Consensus 726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v 805 (1092)
...-.....+|.++|..+.+..-|..+..|++........+.. .-.+|+.. .... ..+|...+
T Consensus 309 ------~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~----~~~v~~~~------~v~y-~~GH~~~~ 371 (441)
T d1qnia2 309 ------ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDR----VNYIRQKL------DVQY-QPGHNHAS 371 (441)
T ss_dssp ------BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCC----CCCEEEEE------ECSS-CEEEEEET
T ss_pred ------ccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCC----CceeEecc------cccc-CCCCCccc
Confidence 0011234457899998888888899999999753211111110 11112100 0000 11477777
Q ss_pred eEEEEecCCCEEEEEe
Q 001363 806 PCFALSKNDAYLFSAS 821 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s 821 (1092)
.+.+++|||++|++++
T Consensus 372 ~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 372 LTESRDADGKWLVVLS 387 (441)
T ss_dssp TTTSTTCCCCEEEEEE
T ss_pred cccccCCCCcEEEecC
Confidence 7788999999999995
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.25 E-value=1.1e-08 Score=110.58 Aligned_cols=161 Identities=13% Similarity=0.131 Sum_probs=103.1
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceee--EEe--cCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcC
Q 001363 803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTI--LTI--MPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR 874 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~--~~~--~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~ 874 (1092)
..+.+++|+|||+++++++ .+.|.+|+... +... ... .......+.++|+| +++++.+.. .+++|.+|++.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence 3467899999999999887 36788887653 2221 222 22346789999999 777775544 57899999997
Q ss_pred CceeeEeec-------------------cccCCeEEEEEcCCCCEEEEEeC-C-----CcEEEEEcCCCc-eeeeeeeec
Q 001363 875 SSEVISKLE-------------------GHSKRVTGLVFSDALNILVSSGG-D-----AQIFVWDVDGWG-IQTCRSLQT 928 (1092)
Q Consensus 875 ~~~~~~~l~-------------------~h~~~V~~l~~spdg~~l~s~s~-D-----g~I~iwd~~~~~-~~~~~~~~~ 928 (1092)
.++...... .+......+.++|||++|+++.+ + +.|..|++.... ......+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 654321110 12223567899999999887643 2 237777776532 222112211
Q ss_pred CCCCcCCCCCceEEEEcc-CCCEEEEE--eCCcEEEEEcCCc
Q 001363 929 PDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEEL 967 (1092)
Q Consensus 929 ~~~~~~~~~~v~~l~~s~-dg~~la~~--~d~~i~lwd~~~~ 967 (1092)
.... ......++|+| +|++|+++ .++.|.+|++...
T Consensus 304 ~~~~---G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 304 TPTS---GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSC---CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEcC---CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 1111 12456799998 89988875 5688999987543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.23 E-value=3.2e-09 Score=114.96 Aligned_cols=254 Identities=10% Similarity=0.109 Sum_probs=151.8
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC-ceeeEEe-cCCCCCeEEEEEcCCCCCEE--EEEe-CCCcEEEEEcCC
Q 001363 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTI-MPPSPTATSLAFNPHDNNVI--AIGM-DDSTILIYNARS 875 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-~~~~~~~-~~~~~~i~~l~~s~~d~~~l--asg~-~dg~v~iwd~~~ 875 (1092)
....+..++|++++++|.++..+.+..|.+.. +...... .........+++++ +++.+ +++. ..+.|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence 34456779999999999988888888887653 2222221 12234456788888 67643 3322 235565554422
Q ss_pred -c------------ee---eE-eeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCC-ceeeeeeeecCCCCcCCC
Q 001363 876 -S------------EV---IS-KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGW-GIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 876 -~------------~~---~~-~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~ 936 (1092)
+ +. .. .-......+.+++|+|||+++++++. ...|.+|++... ............. .
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g 192 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----G 192 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----T
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----C
Confidence 1 10 00 01112234789999999998888764 346888876543 2222222222211 1
Q ss_pred CCceEEEEccCCCEEEEE--eCCcEEEEEcCCceeeeeec------------------cCCCCCEEEEEEecCCCEEEEE
Q 001363 937 PSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWF------------------PISSVPISQATFSCDCRMVFTS 996 (1092)
Q Consensus 937 ~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~~~~~~------------------~~h~~~v~~l~fs~dg~~l~t~ 996 (1092)
.....++|+|||+++.+. .+++|.+|++..+....... ..+......+.++|||++|+++
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 357899999999998875 45789999987654221100 0112345678999999999887
Q ss_pred EC-C-----CcEEEEEcCCCceEEeec-cccccCCCCccccccceEEEECCCCCCEEEEE-eCCCcEEEEecCCCC
Q 001363 997 FV-D-----GTLSIHEASNLEVQCRIL-STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG-LTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 997 ~~-D-----g~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~-~~dg~v~~w~~~~~~ 1064 (1092)
.. + +.|..|++.....+.+.. .......+ -.+..++++|.++.+|+++ ..++.|.+|++....
T Consensus 273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 53 2 237788876543332222 11111111 2355688998667766555 577899999986544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.9e-09 Score=118.97 Aligned_cols=374 Identities=9% Similarity=-0.002 Sum_probs=207.7
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe---------CCCcEEEEE
Q 001363 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---------DDHVIKIWD 606 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s---------~dg~i~iwd 606 (1092)
.|.+++.++.. +.++.|.+||..+++....+.........+....|+||+++++... ..+.+.++|
T Consensus 23 ~W~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYR-----EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCC-----CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEE-----eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 57777776543 2245699999998877555555443344677788999999988764 357789999
Q ss_pred CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCC
Q 001363 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
+.++..............+....|||||+.+|... ++.|.+.+..++...+........
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~-------------------- 156 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEG-------------------- 156 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTT--------------------
T ss_pred ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcc--------------------
Confidence 99988655444333334566789999999998876 467888887766444332211100
Q ss_pred ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeEEEeecC
Q 001363 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPR 765 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~~w~~~~ 765 (1092)
.+..|-.| |-.+. .-...-.++.|||||+.|+....| ..+..+.++.
T Consensus 157 -------------~i~nG~~d-----~vyee--------------e~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~ 204 (465)
T d1xfda1 157 -------------VIYNGLSD-----WLYEE--------------EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT 204 (465)
T ss_dssp -------------TEEEEECC-----HHHHH--------------TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred -------------eeeccccc-----hhhhh--------------hhccccceEEECCCCCeEEEEEecccccceeeccc
Confidence 00000000 10000 000111356678888877776543 5555555543
Q ss_pred CCc-----------CcCcccccccCCccccCCCCCceeeecCCC--CCCCCCeeEEEEecCCCEEEEEeC-----CeEEE
Q 001363 766 NDL-----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTD--SNSQEAVPCFALSKNDAYLFSASG-----GVISL 827 (1092)
Q Consensus 766 ~~~-----------~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~--~~~~~~v~~~~~s~dg~~l~~~sd-----g~i~i 827 (1092)
... ...|.......+.++++.++.......... .....-+..+.|++++++++...+ ..+.+
T Consensus 205 ~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~ 284 (465)
T d1xfda1 205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (465)
T ss_dssp CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred ccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEE
Confidence 211 111222222345566665554222111110 012223677899999987777642 24888
Q ss_pred EEcCCceeeEEecCCC-CC----eEEEEEcCCCCCEEE---EEeCCC--cEEEEEcC------CceeeEeeccccCCeEE
Q 001363 828 YIVMTFKTILTIMPPS-PT----ATSLAFNPHDNNVIA---IGMDDS--TILIYNAR------SSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 828 wd~~~~~~~~~~~~~~-~~----i~~l~~s~~d~~~la---sg~~dg--~v~iwd~~------~~~~~~~l~~h~~~V~~ 891 (1092)
+|..++++...+.... .. -....|++ |++.++ ....+| .++...+. .++.+..+....-.|..
T Consensus 285 ~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~ 363 (465)
T d1xfda1 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK 363 (465)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred EcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEE
Confidence 9999988765543222 11 23467899 665332 222333 34433322 23444555544555666
Q ss_pred E-EEcCCCCEEE-EEeCCC--cEEEEEcC--CCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCC----cEEE
Q 001363 892 L-VFSDALNILV-SSGGDA--QIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAI 961 (1092)
Q Consensus 892 l-~~spdg~~l~-s~s~Dg--~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~----~i~l 961 (1092)
+ +|.++++.+. ++..++ .-.||.+. ++.. ..++....... ....++.|||+|++++....+ .+.+
T Consensus 364 i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~~~---~~~~~~~~S~~~~y~v~~~s~~~~P~~~~ 438 (465)
T d1xfda1 364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTV 438 (465)
T ss_dssp EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred EEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccCCC---CCEEEEEECCCCCEEEEEeecCCCCeEEE
Confidence 4 6888877765 443332 23455543 3221 12222211111 246789999999999874322 4777
Q ss_pred EEcCCceeeeee
Q 001363 962 YEAEELTCLKQW 973 (1092)
Q Consensus 962 wd~~~~~~~~~~ 973 (1092)
++..+++.+..+
T Consensus 439 ~~~~~~~~~~~L 450 (465)
T d1xfda1 439 HNTTDKKKMFDL 450 (465)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEEEEE
Confidence 777777766653
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.5e-08 Score=104.83 Aligned_cols=238 Identities=10% Similarity=0.131 Sum_probs=143.4
Q ss_pred cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCC---EEEEEEccCCCcccce
Q 001363 358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH---IVQLYAYHGGSDARQQ 434 (1092)
Q Consensus 358 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~---~i~iwd~~~~~~~~~~ 434 (1092)
.|.|-|...+.... +..+...+.+.+|||||++||...... .+.+.+..++...
T Consensus 20 ~l~i~d~dG~~~~~--------------------l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--- 76 (269)
T d2hqsa1 20 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--- 76 (269)
T ss_dssp EEEEEETTSCSCEE--------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred EEEEEcCCCCCcEE--------------------EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---
Confidence 57777877555443 334567788999999999999875433 4666676665422
Q ss_pred EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE--ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCe--
Q 001363 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK-- 510 (1092)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~-- 510 (1092)
.+..+.+......|+|||+.+. .....++...++ ........... ..........+... ....+++...+|.
T Consensus 77 -~~~~~~~~~~~~~~spdg~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 152 (269)
T d2hqsa1 77 -QVASFPRHNGAPAFSPDGSKLA-FALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPD-SQNLAFTSDQAGRPQ 152 (269)
T ss_dssp -EEECCSSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTT-SSEEEEEECTTSSCE
T ss_pred -EEeeeecccccceecCCCCeee-EeeecCCccceeecccccccceeee-eccccccccccccc-cccceecccccCCce
Confidence 3456778888999999999632 233333333333 22222222222 22222223333332 2234555555665
Q ss_pred EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001363 511 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1092)
Q Consensus 511 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1092)
|.+.++...... .............++|+++.++...... +...+.+.+...+..... . .. .......|+|||
T Consensus 153 i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~-~~---~~~~~p~~SPDG 225 (269)
T d2hqsa1 153 VYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVL-S-ST---FLDETPSLAPNG 225 (269)
T ss_dssp EEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCCEEEC-C-CS---SSCEEEEECTTS
T ss_pred Eeeeecccccce-eeecccccccccccccccceeEEEeecC-CceeeeEeecccccceEe-e-cC---ccccceEECCCC
Confidence 444455444332 3344455677889999999999877543 356677778776654322 2 22 456778899999
Q ss_pred CEEEEEeC---CCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 591 DQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 591 ~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
+.|+..+. ...++++++..+.... +.... ..+...+|||
T Consensus 226 ~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~--g~~~~p~WSP 267 (269)
T d2hqsa1 226 TMVIYSSSQGMGSVLNLVSTDGRFKAR-LPATD--GQVKFPAWSP 267 (269)
T ss_dssp SEEEEEEEETTEEEEEEEETTSCCEEE-CCCSS--SEEEEEEECC
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEE-EeCCC--CcEEeEEeCC
Confidence 99876543 3468899998766544 33222 2356778887
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.10 E-value=2.4e-08 Score=105.00 Aligned_cols=246 Identities=11% Similarity=0.039 Sum_probs=160.9
Q ss_pred cCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
+.-|.+.+..+...+ .+..++++|||+ |+++...+++|..|+.... ... +......+
T Consensus 14 ~~~~~~v~~~~p~~~-~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~-~~~--------------------~~~~~~~~ 70 (302)
T d2p4oa1 14 ELAPAKIITSFPVNT-FLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI--------------------HATVEGKV 70 (302)
T ss_dssp CCCCEEEEEEECTTC-CEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE--------------------EEECSSEE
T ss_pred cCCcccEEEECCCCC-CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCC-EEE--------------------EEcCCCCc
Confidence 334455566665544 688999999998 7888888999988886543 221 22355789
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
.+++|+|||+++++...++.+..|+......................+++.++++ ++++.+.++.+..+|..++....
T Consensus 71 ~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~ 148 (302)
T d2p4oa1 71 SGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSI 148 (302)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEE
T ss_pred ceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCccee
Confidence 9999999999999988888888888765433222111223445678999999998 78888888999999988775433
Q ss_pred EEec--------C--CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEccCCCEEEEE
Q 001363 480 SFEG--------H--GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 480 ~~~~--------~--~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
.... + ......+.+ . ++.++++.+..+.|..++......... ..........+++.++|+..++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~ngi~~--~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~ 225 (302)
T d2p4oa1 149 WLEHPMLARSNSESVFPAANGLKR--F-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT 225 (302)
T ss_dssp EEECGGGSCSSTTCCSCSEEEEEE--E-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred EecCCccceeeccCcccccccccc--c-CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEE
Confidence 2221 1 112334443 2 235667777888888888765443221 11122334579999999976665
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE---cCCCCEEEEEeCC
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF---DTAKDQILAAGDD 599 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~s~d 599 (1092)
.. .+.|..++... +......... ......+++| ++|++.|++++..
T Consensus 226 ~~----~~~V~~i~p~G-~~~~~~~~~~-~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 226 HI----YNSVVRIAPDR-STTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp BT----TCCEEEECTTC-CEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cC----CCcEEEECCCC-CEEEEEecCC-CCCCceEEEEcCCCCCCCEEEEECCC
Confidence 43 45588888754 3333332221 1246789999 6788888776644
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=1.2e-07 Score=97.84 Aligned_cols=237 Identities=15% Similarity=0.095 Sum_probs=146.0
Q ss_pred CCCcceeeecccCCCCceEEeecCCCceEEEEEcCCC--cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCc
Q 001363 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1092)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~ 398 (1092)
+......+.+..+...+...+|||||++|+.+....+ .+.+.+..++.... +..+...
T Consensus 25 d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 84 (269)
T d2hqsa1 25 DYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRH 84 (269)
T ss_dssp ETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSC
T ss_pred cCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eeeeecc
Confidence 3344445555556678899999999997655544433 36666666655432 4457788
Q ss_pred EEEEEECCCCCEEEEEeC-CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--EEEEECCCC
Q 001363 399 VNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTG 475 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~ 475 (1092)
.....|||||+.++.... ++...++......... .....+........+++++.. .+++...++. |.+.++..+
T Consensus 85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~ 161 (269)
T d2hqsa1 85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGG 161 (269)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSS
T ss_pred cccceecCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeeecccc
Confidence 899999999999988754 3333333333222111 122334445556678888875 4455555554 555565555
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEe-cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
... .+..+........++ +++..++..+ ..+...+|..+...................|||||+.|+..+.. .+.
T Consensus 162 ~~~-~~~~~~~~~~~~~~s--pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~~~ 237 (269)
T d2hqsa1 162 APQ-RITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-GMG 237 (269)
T ss_dssp CCE-ECCCSSSEEEEEEEC--TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-TTE
T ss_pred cce-eeecccccccccccc--cccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC-CCC
Confidence 433 333344445555664 4566666554 44555666555444444555555667788999999999877643 346
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
..|+++++..+...+ +.... +.+...+|+|
T Consensus 238 ~~l~~~~~dg~~~~~-lt~~~---g~~~~p~WSP 267 (269)
T d2hqsa1 238 SVLNLVSTDGRFKAR-LPATD---GQVKFPAWSP 267 (269)
T ss_dssp EEEEEEETTSCCEEE-CCCSS---SEEEEEEECC
T ss_pred cEEEEEECCCCCEEE-EeCCC---CcEEeEEeCC
Confidence 789999998776543 44334 5677888988
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.96 E-value=7.2e-08 Score=98.57 Aligned_cols=238 Identities=9% Similarity=-0.028 Sum_probs=149.0
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
....++++++|+.+++..+..+.+..++..+...... ..+-......++++++|+++++..
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v~d~ 75 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTDF 75 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEEEET
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEEeee
Confidence 4589999999985555555567777776654432211 111123456789999999887777
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
..+.+++++-.++..+. .. ........+++.++++ ++++-.....+..++...................+++.+
T Consensus 76 ~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~ 149 (260)
T d1rwia_ 76 NNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN 149 (260)
T ss_dssp TTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT
T ss_pred eeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceeeecC
Confidence 77777766655543222 11 2234578899999998 666666667777777555432221112223456777754
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
++.++++...++.|..++.+.................+++.++|+.+++... .+.|..++...... ..+....
T Consensus 150 --~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~~-~~~~~~~ 222 (260)
T d1rwia_ 150 --SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTS-TVLPFTG 222 (260)
T ss_dssp --TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSCC-EECCCCS
T ss_pred --CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCeE-EEEccCC
Confidence 6678888888899999987765544433334456688999999987776643 55688887655432 2222111
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
......++++++++.+++-..++.|+.++.
T Consensus 223 --~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 223 --LNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp --CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred --CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 245688999999887776566666665554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.96 E-value=1.3e-07 Score=96.68 Aligned_cols=238 Identities=10% Similarity=0.052 Sum_probs=153.7
Q ss_pred CCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001363 801 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
+......++++++|...++.. .+.+..++...................+++++ +++++++....+.+++++-.++..
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence 445668999999999776654 36676666554332222222234567899999 888888777777777776655554
Q ss_pred eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCC
Q 001363 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 957 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~ 957 (1092)
+....+ .....++++.++++++++-.....+..++....... .....+.. ....++++++|+++++ ..++
T Consensus 91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~----~~~~~~~~----~p~~i~~~~~g~~~v~~~~~~ 161 (260)
T d1rwia_ 91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VLPFTGLN----DPDGVAVDNSGNVYVTDTDNN 161 (260)
T ss_dssp ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE----ECCCCSCC----SCCEEEECTTCCEEEEEGGGT
T ss_pred eeeeee-eeecccccccccceeEeeccccccccccccccceee----eeeecccC----CcceeeecCCCCEeeeccccc
Confidence 444333 345789999999998887766777777776653311 11111211 3578999999998777 4667
Q ss_pred cEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEE
Q 001363 958 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1037 (1092)
Q Consensus 958 ~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1037 (1092)
.|..++........ +..........+++.++|.++++....+.|..++....... .+. . ..--.|..++
T Consensus 162 ~i~~~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~------~---~~~~~P~~i~ 230 (260)
T d1rwia_ 162 RVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP------F---TGLNTPLAVA 230 (260)
T ss_dssp EEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC------C---CSCCCEEEEE
T ss_pred cccccccccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc------c---CCCCCeEEEE
Confidence 89999976544332 23344566789999999998888877888888876654322 111 0 1112466789
Q ss_pred ECCCCCCEEEEEeCCCcEEEEec
Q 001363 1038 AHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1038 ~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
+++ ++.++++-..+++|+..+.
T Consensus 231 ~d~-~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 231 VDS-DRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp ECT-TCCEEEEEGGGTEEEEECC
T ss_pred EeC-CCCEEEEECCCCEEEEEeC
Confidence 998 4677777666676665554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.91 E-value=2.6e-07 Score=96.94 Aligned_cols=240 Identities=13% Similarity=0.137 Sum_probs=154.6
Q ss_pred CeeEEEEecCCCEEEEEe--------CCeEEEEEcCCceeeEEecCC----CCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001363 804 AVPCFALSKNDAYLFSAS--------GGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--------dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1092)
....++|.++|+++++.. +++|..||..++......... ......++|.+ ++..|+++...+.+..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence 356789999999887653 356888898877654433221 23457899999 78877778777778889
Q ss_pred EcCCceeeEeecccc----CCeEEEEEcCCCCEEEEEeC---------------CCcEEEEEcCCCceeeeeeeecCCCC
Q 001363 872 NARSSEVISKLEGHS----KRVTGLVFSDALNILVSSGG---------------DAQIFVWDVDGWGIQTCRSLQTPDGV 932 (1092)
Q Consensus 872 d~~~~~~~~~l~~h~----~~V~~l~~spdg~~l~s~s~---------------Dg~I~iwd~~~~~~~~~~~~~~~~~~ 932 (1092)
+..++.......... .....+++.++|++.+|-.. +|.|..++.+. +.. .......
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~--~~~~~~~-- 172 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMI--QVDTAFQ-- 172 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEE--EEEEEES--
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-cee--EeeCCcc--
Confidence 987654222111111 13577999999999887532 22343343332 211 1111111
Q ss_pred cCCCCCceEEEEccCCC----EEEEE--eCCcEEEEEcCCceeee------eeccCCCCCEEEEEEecCCCEEEEEECCC
Q 001363 933 MTLAPSETHIQFHKDQT----RFLLV--HETHLAIYEAEELTCLK------QWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 933 ~~~~~~v~~l~~s~dg~----~la~~--~d~~i~lwd~~~~~~~~------~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
....++|+|++. .|.++ ..+.|..||+.....+. .+...+......+++..+|+..++....+
T Consensus 173 -----~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g 247 (314)
T d1pjxa_ 173 -----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp -----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred -----eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence 245799999875 44443 55778888875332221 11112234567899999999888887889
Q ss_pred cEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCC-EEEEEeCCCcEEEEecCCCCC
Q 001363 1001 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1001 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~-~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
.|.+||.+++.....+.... -.+.+++|.| |++ ++++.+.+|.|...++..++.
T Consensus 248 ~I~~~dp~~g~~~~~i~~p~----------~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 248 HIEVFGPDGGQPKMRIRCPF----------EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRNGK 302 (314)
T ss_dssp EEEEECTTCBSCSEEEECSS----------SCEEEEEECT-TSSEEEEEETTTTEEEEEECSSCBC
T ss_pred EEEEEeCCCCEEEEEEECCC----------CCEEEEEEeC-CCCEEEEEECCCCcEEEEECCCCCh
Confidence 99999999888766654211 1345788998 455 667777889999998877664
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.89 E-value=1.6e-07 Score=98.40 Aligned_cols=235 Identities=10% Similarity=0.037 Sum_probs=148.8
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee-eE
Q 001363 803 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-IS 880 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~ 880 (1092)
..+..++++|||+++++.. +++|..|+... + ...+......+.+++|++ +++++++...++.+..|+...... ..
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence 3578899999999988876 68888888553 3 334444667899999999 889999988888888888754321 11
Q ss_pred ee--ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC--CCcCCCCCceEEEEccCCCEEEE--E
Q 001363 881 KL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD--GVMTLAPSETHIQFHKDQTRFLL--V 954 (1092)
Q Consensus 881 ~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~s~dg~~la~--~ 954 (1092)
.+ .........+++.++++++++.+.++.+..++..++.......-.... ...........++++ +..+.. .
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence 22 124456889999999999999888998888888876432211111000 111101123455554 455544 4
Q ss_pred eCCcEEEEEcCCceeeeee-ccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccc
Q 001363 955 HETHLAIYEAEELTCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1033 (1092)
Q Consensus 955 ~d~~i~lwd~~~~~~~~~~-~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1033 (1092)
..+.|..++.......... ...+......++|++||+++++...++.|..++....... ..... .....+
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~-~~~~~--------~~~~~p 253 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTI-IAQAE--------QGVIGS 253 (302)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEE-EECGG--------GTCTTE
T ss_pred CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEE-EEecC--------CCCCCc
Confidence 5677888887654332211 1112345677999999998888888899988876643222 11100 111246
Q ss_pred eEEEE---CCCCCCEEEEEeCC
Q 001363 1034 HAIAA---HPLKPTQFAVGLTN 1052 (1092)
Q Consensus 1034 ~~~~~---~p~d~~~l~~~~~d 1052 (1092)
.+++| .| |++.|.+++..
T Consensus 254 t~vafg~~~~-D~~~Lyvtt~~ 274 (302)
T d2p4oa1 254 TAVAFGQTEG-DCTAIYVVTNG 274 (302)
T ss_dssp EEEEECCSTT-TTTEEEEEECT
T ss_pred eEEEEcCCCC-CCCEEEEECCC
Confidence 67889 44 56666665543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.88 E-value=1.4e-06 Score=89.82 Aligned_cols=242 Identities=12% Similarity=0.136 Sum_probs=162.1
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC--CCCCCCCeeEEEEec
Q 001363 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT--DSNSQEAVPCFALSK 812 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~--~~~~~~~v~~~~~s~ 812 (1092)
.....++++++|+.+++-..+..|++|+.+. ..+..+... ..+.......+++.+
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-----------------------~~~~~~~~~~~~~~~~~~p~~~~~~~ 79 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-----------------------RFKFQFGECGKRDSQLLYPNRVAVVR 79 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTS-----------------------CEEEEECCBSSSTTCBSSEEEEEEET
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCCC-----------------------CEEEEecccCCCcccccccccccccc
Confidence 3467899999999777767778888886321 111111000 001222344566665
Q ss_pred CCC-EEEEEe--CCeEEEEEcCCceeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee--cccc
Q 001363 813 NDA-YLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHS 886 (1092)
Q Consensus 813 dg~-~l~~~s--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~ 886 (1092)
+.. ++++.. ++.|..++. .++....+.. .......+++.+ ++.++++....+.+.+++.. ++.+..+ ..+.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~ 156 (279)
T d1q7fa_ 80 NSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHL 156 (279)
T ss_dssp TTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTC
T ss_pred cccccceeccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccc
Confidence 544 444443 356777776 4666666543 345678999999 88888888878889898865 5656554 3466
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-E-eCCcEEEEEc
Q 001363 887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEA 964 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~i~lwd~ 964 (1092)
.....+++.++++.+++....+.|++||....... .+. ..+.. .....+++.++|+++++ . .+..|.+|+.
T Consensus 157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~---~~g-~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 157 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLR---QIG-GEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp SSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEE---EES-CTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred cccceeeeccceeEEeeeccccceeeeecCCceee---eec-ccccc---cCCcccccccCCeEEEEECCCCcEEEEECC
Confidence 77889999999999999888999999998763211 111 12222 25789999999998887 3 3456999984
Q ss_pred CCceeeeeeccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 965 EELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 965 ~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
+|+.+..+... .......+++.+||.+++ +..+.+|++|+.....
T Consensus 230 -~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 230 -DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA 275 (279)
T ss_dssp -TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred -CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence 57766664332 244688999999997555 5678999999988764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.88 E-value=6.5e-07 Score=93.82 Aligned_cols=246 Identities=14% Similarity=0.091 Sum_probs=154.1
Q ss_pred CceEEeecCCCceEEEEEcC-------CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 336 SPMSMDFHPVQHTLLLVGTN-------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~-------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
....++|.|||+ ++++... +++|..||..++.......- ...........++|.++|
T Consensus 19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~~dg 82 (314)
T d1pjxa_ 19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCDRDA 82 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEECSSS
T ss_pred CCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECC---------------ccccCCCcceeEEEeCCC
Confidence 566789999998 4444322 36788899888765432100 011112346789999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeC---------------CCcEEEEEC
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---------------DKTIKVWDA 472 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~---------------d~~i~vwd~ 472 (1092)
..|+++...+.|...+..++..........+.. ...+.++|.++|. +.++-.. +|.|..++.
T Consensus 83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~ 160 (314)
T d1pjxa_ 83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEee
Confidence 988888877778888887653211000011111 1357899999998 5665321 234544543
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCc---cEEEEEecCCeEEEEEcCCCCceE------EecCC-CCceEEEEEccCCC
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENI---HFIFSISVDGKIKAWLYDSLGARV------DYDAP-GLGCTRMAYSANGR 542 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~-~~~i~~~~~s~dg~ 542 (1092)
.++..... ..-..-+.++|++..++ .+.++-+..+.|..||+....... .+... ......+++..+|+
T Consensus 161 -dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 161 -DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp -TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred -cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence 34433322 23334467788775543 245555778889999876544322 11111 22456899999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE-EEeCCCcEEEEECC
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMN 608 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~ 608 (1092)
..++... .+.|.+||..++..+..+.... ....+++|.|+++.|+ +.+.+|.|...++.
T Consensus 239 lyVa~~~----~g~I~~~dp~~g~~~~~i~~p~---~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 239 LLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEcC----CCEEEEEeCCCCEEEEEEECCC---CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 7776543 5569999999888777666544 5788999999987654 45567878777764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.86 E-value=1.5e-06 Score=89.41 Aligned_cols=240 Identities=10% Similarity=0.100 Sum_probs=160.9
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEE-eCCCcEEEEEcCC
Q 001363 804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIG-MDDSTILIYNARS 875 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~ 875 (1092)
....++++++|+++++-. .+.|++||.+ ++.+..+... ......+++.++.+.++++. +.++.|..++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 457899999999776654 5889999965 6666666321 11345667665344455443 344577777764
Q ss_pred ceeeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-
Q 001363 876 SEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 953 (1092)
Q Consensus 876 ~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~- 953 (1092)
++....+. ........+++.++|+++++....+.+.+++....... .+... .+. .....+++.++|+++++
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~---~~g~~-~~~---~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH---KFGCS-KHL---EFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE---EEECT-TTC---SSEEEEEECSSSEEEEEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceee---ccccc-ccc---cccceeeeccceeEEeee
Confidence 55555553 35566789999999999888887788888886652211 11111 111 25788999999988877
Q ss_pred EeCCcEEEEEcCCceeeeeec-cCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEEcCCCceEEeeccccccCCCCccccc
Q 001363 954 VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV 1031 (1092)
Q Consensus 954 ~~d~~i~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~t~~~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1031 (1092)
...+.|++||.. |+.+..+- .++......+++.++|+.+++-+. +++|.+|+ .+|+.+..+.... ..-
T Consensus 175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~--------~~~ 244 (279)
T d1q7fa_ 175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV--------KHA 244 (279)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS--------CCS
T ss_pred ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC--------CCC
Confidence 456789999975 55555542 234556889999999998777543 45799998 4588776665211 112
Q ss_pred cceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1032 YPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1032 ~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
.+..+++.| |+. |++++.++.|++|+..--.
T Consensus 245 ~p~~vav~~-dG~-l~V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 245 QCFDVALMD-DGS-VVLASKDYRLYIYRYVQLA 275 (279)
T ss_dssp CEEEEEEET-TTE-EEEEETTTEEEEEECSCCC
T ss_pred CEeEEEEeC-CCc-EEEEeCCCeEEEEEeeeec
Confidence 456788888 454 6667789999999985443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.9e-06 Score=95.63 Aligned_cols=228 Identities=10% Similarity=0.074 Sum_probs=138.5
Q ss_pred eecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-----
Q 001363 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY----- 415 (1092)
Q Consensus 341 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~----- 415 (1092)
.|.+++.+ +. -..+|.|.+||+.+++....... -.-....+....|||||++++...
T Consensus 23 ~W~~~~~~-~~-~~~~g~i~~~~~~~~~~~~l~~~----------------~~~~~~~~~~~~~SpD~~~vl~~~~~~~~ 84 (465)
T d1xfda1 23 KWISDTEF-IY-REQKGTVRLWNVETNTSTVLIEG----------------KKIESLRAIRYEISPDREYALFSYNVEPI 84 (465)
T ss_dssp CBSSSSCB-CC-CCSSSCEEEBCGGGCCCEEEECT----------------TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred EEeCCCcE-EE-EeCCCcEEEEECCCCCEEEEEcC----------------ccccccccceeEECCCCCeEEEEEcccce
Confidence 57788873 33 34568999999998875432110 011233667788999999998874
Q ss_pred ----CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-cCCcCe--
Q 001363 416 ----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPV-- 488 (1092)
Q Consensus 416 ----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v-- 488 (1092)
..+.+.++|+.++.... +.........+....|||||+. ++-.. ++.|.+.+..++..++... +..+.|
T Consensus 85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~n 160 (465)
T d1xfda1 85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYN 160 (465)
T ss_dssp SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred eEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceeec
Confidence 34678999999876432 1112233456777899999996 43333 6678888887776655442 222212
Q ss_pred ---------------EEEeecccCCccEEEEEecC-C---------------------------------eEEEEEcCCC
Q 001363 489 ---------------YSLCPHAKENIHFIFSISVD-G---------------------------------KIKAWLYDSL 519 (1092)
Q Consensus 489 ---------------~~i~~~~~~~~~~l~s~~~d-g---------------------------------~i~vwd~~~~ 519 (1092)
.++.| ++||+.|+....| . .+.++|+...
T Consensus 161 G~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~ 238 (465)
T d1xfda1 161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (465)
T ss_dssp EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred cccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCC
Confidence 23334 6688888876432 2 2334444443
Q ss_pred CceEEecCC------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce----EEEEEcCC
Q 001363 520 GARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV----SVVHFDTA 589 (1092)
Q Consensus 520 ~~~~~~~~~------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v----~~~~~~~~ 589 (1092)
......... ..-+..+.|+++++.++...........+.++|..+|+....+.... ...| ....|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~--~~wv~~~~~~p~~~~d 316 (465)
T d1xfda1 239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSKD 316 (465)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECTT
T ss_pred cEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC--CceEeccCCceeEccC
Confidence 332221111 11256789999998776655434445578899999998876665433 1222 23578889
Q ss_pred CCEEE
Q 001363 590 KDQIL 594 (1092)
Q Consensus 590 ~~~l~ 594 (1092)
|+.++
T Consensus 317 g~~~~ 321 (465)
T d1xfda1 317 GRKFF 321 (465)
T ss_dssp SCSEE
T ss_pred CCeeE
Confidence 87543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.76 E-value=3.7e-06 Score=88.22 Aligned_cols=231 Identities=9% Similarity=0.083 Sum_probs=147.7
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC----CcEEEEEcCCcee
Q 001363 804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV 878 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~ 878 (1092)
.+..++|.++|+++++-. +++|..|+..+.+....+.........+++++ |++++++...+ +.+...+..++..
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence 456899999998666553 68899999887776666655666788999999 88887765432 3455555555544
Q ss_pred eEeecc--ccCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCE
Q 001363 879 ISKLEG--HSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 879 ~~~l~~--h~~~V~~l~~spdg~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
...... -......+++.++|++.++.... +.+..++.+...... ..... .....++|+||++.
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~--~~~~~-------~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKV 190 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSE
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEE--Eeecc-------ceeeeeeeccccce
Confidence 333322 12346789999999988765332 224444444322111 11111 13567999999997
Q ss_pred EEEE--eCCcEEEEEcCCc-eeeee------eccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccc
Q 001363 951 FLLV--HETHLAIYEAEEL-TCLKQ------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1092)
Q Consensus 951 la~~--~d~~i~lwd~~~~-~~~~~------~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~ 1021 (1092)
|.++ ..+.|..|++... ..... ...........+++.++|++.++....+.|.+|+- .|+.+.++.....
T Consensus 191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~ 269 (319)
T d2dg1a1 191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR 269 (319)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence 7653 5678999987632 11111 01111234678999999998888888999999994 7888888764332
Q ss_pred cCCCCccccccceEEEECCCCCCEEEEEe
Q 001363 1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050 (1092)
Q Consensus 1022 ~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1050 (1092)
.+ .....+.+++|.|. ...+++..
T Consensus 270 ~~----~~~~~~~~~~~~~~-~~~~~~t~ 293 (319)
T d2dg1a1 270 DE----GHMLRSTHPQFIPG-TNQLIICS 293 (319)
T ss_dssp GG----TCSCBCCEEEECTT-SCEEEEEE
T ss_pred CC----CcCceeeeEEEeCC-CCEEEEEc
Confidence 11 12334568899884 45555444
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.56 E-value=4.7e-05 Score=79.49 Aligned_cols=234 Identities=10% Similarity=0.010 Sum_probs=145.4
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC----CCcEEEEEC
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDA 472 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d~~i~vwd~ 472 (1092)
..+..++|.++|++.++-...+.|..|+.++++... .+.........++|++||+ ++++... .+.+...+.
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~---~~~~~~~~p~gla~~~dG~--l~va~~~~~~~~~~i~~~~~ 114 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATE 114 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECT
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE---EEeCCCCCeeEEEECCCCC--EEEEecCCCccceeEEEEcC
Confidence 345679999999977777788899999988765333 2334455678999999998 5555432 234555555
Q ss_pred CCCceeEEEecC--CcCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001363 473 VTGSRTYSFEGH--GAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 473 ~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1092)
.++......... ....+.+++ .++|.+.++.... +.+..++.+... ...+...-.....++|+||++.|
T Consensus 115 ~~~~~~~~~~~~~~~~~~nd~~~--d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 115 NGDNLQDIIEDLSTAYCIDDMVF--DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVL 191 (319)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEE--CTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEE
T ss_pred CCceeeeeccCCCcccCCcceeE--EeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceE
Confidence 555444333221 223566666 4466666554321 224444433322 22222222245679999999987
Q ss_pred EEEecCCCCceeEEEEeCCCC-eEEEEE----eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 545 FSCGTSKEGESFLVEWNESEG-AIKRTY----QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
+.+.. ..+.|+.|++... ...... ............+++.++|+..++....+.|.+||. .|+.+..+..+
T Consensus 192 yvad~---~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P 267 (319)
T d2dg1a1 192 WVTET---TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 267 (319)
T ss_dssp EEEEG---GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred EEecc---cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCC
Confidence 76643 2557888886532 211111 111111134678999999998888888999999995 68888888765
Q ss_pred C----CCCCCceEEEccCCCEEEEEeC
Q 001363 620 G----GLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 620 ~----~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
. ....+.+++|.+++..+++.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 268 GRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 3 2234679999998877776654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.53 E-value=5.2e-06 Score=85.49 Aligned_cols=236 Identities=12% Similarity=0.049 Sum_probs=128.2
Q ss_pred eecCC--CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC-C
Q 001363 341 DFHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-K 417 (1092)
Q Consensus 341 ~~spd--g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-d 417 (1092)
..||| |++++.+. ++.|.+.|+.+++... ++.+.+.+...+|||||++||.... +
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 46899 99766664 3678888999887654 5667788999999999999997642 1
Q ss_pred -----CEEEEEEccCCCcccceE---EEcccccceeEEEEecCCCcEEEEEEeC------CCcEEEEECCCCceeEEEec
Q 001363 418 -----HIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 418 -----~~i~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~ 483 (1092)
..|.+++..+++..+... ............+|+|||+ .++.... ...+...+...+.....
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 137 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPL--- 137 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEEC---
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEe---
Confidence 247777777775432100 0112223456789999999 4544322 12345555554443221
Q ss_pred CCcCeEEEeecccCCccEEEEEecCC-----------eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDG-----------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
+........+ ..++..++....+. ......... .................++++ .++... +..
T Consensus 138 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~ 211 (281)
T d1k32a2 138 NLGPATHILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGH--RIYFIT-DID 211 (281)
T ss_dssp CSCSCSEEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETT--EEEEEE-CTT
T ss_pred cCCccceeee--cCCCeEEEeeccccceeeeeccCCcceeeeeccc-cceeeccCCccccceeeeecc--ccceec-ccc
Confidence 1222212111 11222222221111 011111111 111122222233344445554 333333 234
Q ss_pred CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001363 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1092)
+...|+++|+.+++..+...... .. ...|+|||+.|+.. .++.|+++|+.+++....
T Consensus 212 ~~~~l~~~d~~g~~~~~lt~~~~---~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 212 GFGQIYSTDLDGKDLRKHTSFTD---YY--PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp SSCEEEEEETTSCSCEECCCCCS---SC--EEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred cccceEEEeCCCCceEEeecCCC---cc--cccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 46679999998776544322211 22 34689999988764 467899999988876543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.30 E-value=0.00035 Score=71.60 Aligned_cols=216 Identities=9% Similarity=0.021 Sum_probs=141.9
Q ss_pred EEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001363 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1092)
Q Consensus 446 ~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 525 (1092)
...|.+.... ++.+--..+.|..||.++++.. .+. ....+.++++. .++.++++ +.+ .+.++|..+++.....
T Consensus 22 gp~wd~~~~~-l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~--~dg~l~va-~~~-gl~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 22 GPTFDPASGT-AWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKI--SDSKQLIA-SDD-GLFLRDTATGVLTLHA 94 (295)
T ss_dssp EEEEETTTTE-EEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred CCeEECCCCE-EEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEe--cCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence 3567775553 3444446788999998888643 332 34567777764 45555554 554 5788998887655433
Q ss_pred cC----CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCC
Q 001363 526 DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH 600 (1092)
Q Consensus 526 ~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg 600 (1092)
.. ....+..+.+.|+|+..++..........-.+|....++........ .....++|+++++.++. -+..+
T Consensus 95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----~~~Ng~~~s~d~~~l~~~dt~~~ 170 (295)
T d2ghsa1 95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----SIPNSICFSPDGTTGYFVDTKVN 170 (295)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----SSEEEEEECTTSCEEEEEETTTC
T ss_pred eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----CCcceeeecCCCceEEEeecccc
Confidence 22 12357889999999987765543322333455666667665555443 35678999999987655 45678
Q ss_pred cEEEEECCC------CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeec
Q 001363 601 VIKIWDMNK------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN 673 (1092)
Q Consensus 601 ~i~iwd~~~------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 673 (1092)
.|+.+++.. ++........+.......+++..+|++.++....+.|..|+. .++.+..+......+++++|.
T Consensus 171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence 888888643 122222222222234578999999998888888899999994 677888887777778888886
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.22 E-value=4.6e-05 Score=78.07 Aligned_cols=229 Identities=13% Similarity=0.105 Sum_probs=124.4
Q ss_pred cccccCCccccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCC-----cEEEEecCCCCeeEEeeeeeeeccccc
Q 001363 310 MFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG-----DTGLWDVNSGQKLFIRNFKVWDIGACS 384 (1092)
Q Consensus 310 ~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg-----~i~iwd~~~~~~~~~~~~~~~d~~~~~ 384 (1092)
.|.+.+..|+.++.....+.|..+.+.+...+|||||++++.+...++ .|.+++..+++.......
T Consensus 16 ~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~--------- 86 (281)
T d1k32a2 16 IFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF--------- 86 (281)
T ss_dssp EEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC---------
T ss_pred EEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeec---------
Confidence 355555567777777777888888888999999999997665544332 477788887765531000
Q ss_pred ceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEE
Q 001363 385 MLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 458 (1092)
Q Consensus 385 ~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l 458 (1092)
..............+|+|||+.|+..... ..+...+..++... ..+...... .+.+++.. .+
T Consensus 87 ----~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~-~~ 154 (281)
T d1k32a2 87 ----SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV------PLNLGPATH-ILFADGRR-VI 154 (281)
T ss_dssp ----CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE------ECCSCSCSE-EEEETTEE-EE
T ss_pred ----CCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE------EecCCccce-eeecCCCe-EE
Confidence 00011233456778999999999986432 23555565554311 122333333 34455553 33
Q ss_pred EEEeCCC-----------cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCC--eEEEEEcCCCCceEEe
Q 001363 459 ITCGDDK-----------TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDY 525 (1092)
Q Consensus 459 ~s~~~d~-----------~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~ 525 (1092)
+....+. ...+.....+...... .+........+ .++ .++.....++ .|.++|++........
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~lt 230 (281)
T d1k32a2 155 GRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVI--VGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT 230 (281)
T ss_dssp EESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEE--ETT-EEEEEECTTSSCEEEEEETTSCSCEECC
T ss_pred EeeccccceeeeeccCCcceeeeeccccceeecc-CCccccceeee--ecc-ccceecccccccceEEEeCCCCceEEee
Confidence 3332221 1122222222222222 22222222222 222 2333333443 4666677766655433
Q ss_pred cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001363 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
...... ...|+|||+.|+... ++.|+++|+.+++..+.
T Consensus 231 ~~~~~~--~~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 231 SFTDYY--PRHLNTDGRRILFSK-----GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp CCCSSC--EEEEEESSSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred cCCCcc--cccCcCCCCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence 322223 346899999988754 34599999998876544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.19 E-value=0.00045 Score=70.69 Aligned_cols=223 Identities=14% Similarity=0.062 Sum_probs=145.7
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
-+..|++....|..+--..+.|.-||..+++... |. ....+.++++.++|.++++ +.+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~~---------------~~~~~~~i~~~~dg~l~va-~~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------HA---------------LPFMGSALAKISDSKQLIA-SDD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------EE---------------CSSCEEEEEEEETTEEEEE-ETT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------EE---------------CCCCcEEEEEecCCCEEEE-EeC
Confidence 3567887555466666567899999999886432 11 2357889999999977765 455
Q ss_pred CEEEEEEccCCCcccceEEEcc--cccceeEEEEecCCCcEEEEEEeC----CCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 418 HIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
| +.++|..+++... +..... ....++.+.+.|+|+ +.++... .+.-.+|.+..++....+.. -..-+.+
T Consensus 79 g-l~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~ 153 (295)
T d2ghsa1 79 G-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI 153 (295)
T ss_dssp E-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred c-cEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence 4 8999999886322 111111 123688999999998 4444322 23456777677765544433 3345677
Q ss_pred eecccCCcc-EEEEEecCCeEEEEEcCCCCc------eE--EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 492 CPHAKENIH-FIFSISVDGKIKAWLYDSLGA------RV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 492 ~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~------~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
++++ ++. ++++-+..+.|..++++.... .. ...........+++..+|+..++... .+.|..||.
T Consensus 154 ~~s~--d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp 227 (295)
T d2ghsa1 154 CFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT 227 (295)
T ss_dssp EECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT
T ss_pred eecC--CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC
Confidence 7754 444 556667788899998754321 11 22334456788999999987776543 446999996
Q ss_pred CCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEe
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 597 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s 597 (1092)
.|+.+..+.-.. ..+++++|. ++.+.|++.+
T Consensus 228 -~G~~~~~i~lP~---~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 228 -DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp -TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEE
T ss_pred -CCcEeeEecCCC---CceEEEEEeCCCCCEEEEEE
Confidence 688888887654 568999996 6777776644
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.90 E-value=0.0027 Score=71.47 Aligned_cols=373 Identities=12% Similarity=0.088 Sum_probs=191.6
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEecCCc----------Ce-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001363 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGA----------PV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1092)
Q Consensus 458 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----------~v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 526 (1092)
++.++.++.|.-+|.++|+.+.++..... .+ ..+.+ ....++.++.|+.+.-.|..+++......
T Consensus 80 vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~v~~~t~~g~l~alda~tG~~~W~~~ 155 (573)
T d1kb0a2 80 MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (573)
T ss_dssp EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceE----ECCcEEEEecccceeeeccccccceeccc
Confidence 66677788999999999999988752211 01 01111 12367788889999888988888776543
Q ss_pred CCCC---ce--EEEEEccCCCEEEEEec--CCCCceeEEEEeCCCCeEEEEEeecccc----------------------
Q 001363 527 APGL---GC--TRMAYSANGRRLFSCGT--SKEGESFLVEWNESEGAIKRTYQGLQLQ---------------------- 577 (1092)
Q Consensus 527 ~~~~---~i--~~~~~s~dg~~l~~~~~--~~~~~~~i~iwd~~~~~~~~~~~~~~~~---------------------- 577 (1092)
.... .+ +....-.++ .++++.. .....+.|+-+|..+|+.+-.+......
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~ 234 (573)
T d1kb0a2 156 TFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (573)
T ss_dssp TTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred CccCCcceEEeecceEEEec-cEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence 2211 11 111111133 3444332 1223567999999999998776432100
Q ss_pred ------CCce-EEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCceEEEEeCCCCC-------CC
Q 001363 578 ------HNSV-SVVHFDTAKDQILAAGD-------------------DHVIKIWDMNKVQLLTTIDAGGGL-------PE 624 (1092)
Q Consensus 578 ------~~~v-~~~~~~~~~~~l~~~s~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~ 624 (1092)
...+ ...++.++...++.+.. ...|.-.|.++++.....+...+. ..
T Consensus 235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~ 314 (573)
T d1kb0a2 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (573)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence 0111 13456677666665431 124667788888887766543211 11
Q ss_pred CceEEEccCC---CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 625 NPRICFNKNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 625 v~~v~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
........++ ..++.++.+|.+.++|..+++.+............ .+.. .+..+
T Consensus 315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~-~~~~----------------------~~~~~ 371 (573)
T d1kb0a2 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS-GYDK----------------------HGKPI 371 (573)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE-EECT----------------------TSCEE
T ss_pred eeecceecCCCceeeeeeccccceeEEecccccccccccccccccccc-cccc----------------------cccee
Confidence 1112222333 35777888999999999999877654422111100 0000 00000
Q ss_pred eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001363 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 781 (1092)
+.... ..........+.......-...+++|+...++....+....++.............
T Consensus 372 -----------~~~~~-~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~------- 432 (573)
T d1kb0a2 372 -----------GIAAA-RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPG------- 432 (573)
T ss_dssp -----------ECGGG-GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTT-------
T ss_pred -----------eeeec-cccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCC-------
Confidence 00000 00000000111100111112457888888888777775555544322111000000
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCe-EEEEEcCCCCCEEE
Q 001363 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIA 860 (1092)
Q Consensus 782 ~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~d~~~la 860 (1092)
.+..+. ..... .+ +++.-.....-|.+.-||+.+++.+.+........ ..++. .+.+|+
T Consensus 433 --~~~~g~------------~~~~~--~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lst---agglVF 492 (573)
T d1kb0a2 433 --KPQSGT------------GWNTA--KF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT---AGNVVF 492 (573)
T ss_dssp --STTGGG------------TCCCC--EE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEE
T ss_pred --cccccc------------ccccc--cc-cccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEE---cCCEEE
Confidence 000000 00000 00 00000000012578889999999887765432211 22333 456888
Q ss_pred EEeCCCcEEEEEcCCceeeEeecc----ccCCeEEEEEcCCCCE
Q 001363 861 IGMDDSTILIYNARSSEVISKLEG----HSKRVTGLVFSDALNI 900 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~~~~l~~----h~~~V~~l~~spdg~~ 900 (1092)
+|+.||.++.+|.++|+.+.++.- +..+ +.|..||+.
T Consensus 493 ~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQ 533 (573)
T d1kb0a2 493 QGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQ 533 (573)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEE
T ss_pred EECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEE
Confidence 899999999999999999988763 2233 455568864
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.89 E-value=0.008 Score=67.25 Aligned_cols=201 Identities=11% Similarity=0.001 Sum_probs=118.9
Q ss_pred CCCcEEEEEEeCCCcEEEEEC-CCCceeEEEecCCcC----e-------EEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001363 452 PCKQISVITCGDDKTIKVWDA-VTGSRTYSFEGHGAP----V-------YSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1092)
Q Consensus 452 d~~~l~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~----v-------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 519 (1092)
+|. ++++.+.++.|...|. ++|+.+.++...... . ..+++. +..++.++.||.+.-.|.+++
T Consensus 62 ~g~--vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG 135 (571)
T d2ad6a1 62 GDM--MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTG 135 (571)
T ss_dssp TTE--EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTC
T ss_pred CCE--EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhh
Confidence 454 3343334678888887 479998877421110 0 112221 246788899999999999998
Q ss_pred CceEEecCCC----CceEEEEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccc-----------------
Q 001363 520 GARVDYDAPG----LGCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL----------------- 576 (1092)
Q Consensus 520 ~~~~~~~~~~----~~i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~----------------- 576 (1092)
+......... ..+++.-.-.++..++ +.... ...+.|+-+|..+|+.+-.+.....
T Consensus 136 ~~~w~~~~~~~~~~~~~t~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~ 214 (571)
T d2ad6a1 136 KINWEVEVCDPKVGSTLTQAPFVAKDTVLM-GCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEE-ECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred hhhccccccccccccceeecCeEeCCeEEE-eeccccccccCcEEEEECCCCcEEEEEeccCCccccccccccccccccc
Confidence 8776543321 1111111122344333 33211 1356799999999999877653210
Q ss_pred -----------------cCCce-EEEEEcCCCCEEEEEeC----------------CCcEEEEECCCCceEEEEeCCCCC
Q 001363 577 -----------------QHNSV-SVVHFDTAKDQILAAGD----------------DHVIKIWDMNKVQLLTTIDAGGGL 622 (1092)
Q Consensus 577 -----------------~~~~v-~~~~~~~~~~~l~~~s~----------------dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1092)
....+ ...++.++...++.+.. ...+.-.|.++|+.+...+...+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D 294 (571)
T d2ad6a1 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred CcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcc
Confidence 00111 23466777777766543 345778899999999887753221
Q ss_pred -------CCCceEEEccCCC---EEEEEeCCCeEEEEECCCCceeee
Q 001363 623 -------PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDA 659 (1092)
Q Consensus 623 -------~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~ 659 (1092)
..........+++ .++.++.+|.+.++|..+++.+..
T Consensus 295 ~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence 1111222233444 467788899999999999987754
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.88 E-value=0.016 Score=57.35 Aligned_cols=242 Identities=11% Similarity=-0.004 Sum_probs=149.7
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcc--cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
|.+|+.+.. +.|+-.+++..... .....+..+...+..++|.+..+. ++.+-..++.|+..++..+.....+....
T Consensus 1 ~~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~ 78 (263)
T d1npea_ 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL 78 (263)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred CCEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEecc
Confidence 345555433 45777777654321 122234445556888999988775 44555667889998987665554444444
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
..+..+++.... +.+.++-...+.|.+.+++.................+++.|...+++...... ....|..-++...
T Consensus 79 ~~p~~iAvD~~~-~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-~~~~I~r~~~dG~ 156 (263)
T d1npea_ 79 GSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT 156 (263)
T ss_dssp CCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred ccccEEEEeccC-CeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC-CCcEEEEecCCCC
Confidence 567888885433 34445556678999999987766554444445788999999888777654321 2334555565544
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
......... ......+++.+.++.|+.+ ...+.|...++........+.... ....+++. ++.+..+-...+
T Consensus 157 ~~~~i~~~~---~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~-~~~lYwtd~~~~ 229 (263)
T d1npea_ 157 NRRILAQDN---LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTN 229 (263)
T ss_dssp CCEEEECTT---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTT
T ss_pred Cceeeeeec---ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE-CCEEEEEECCCC
Confidence 333222221 2467889999888888666 467789999987655544443322 23567765 344444444668
Q ss_pred eEEEEECCCCceeeec
Q 001363 645 RIKILETPESNSVDAA 660 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~ 660 (1092)
.|...+..+++.....
T Consensus 230 ~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 230 SVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCccceEE
Confidence 8888888877665543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.85 E-value=0.0015 Score=69.96 Aligned_cols=285 Identities=9% Similarity=-0.031 Sum_probs=142.9
Q ss_pred CceEEeecCCCceEEEEEcCC-----C------cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNV-----G------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d-----g------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+...+...+|+ +++.|+.+ + .+.+||..++.-... ......|.......++
T Consensus 21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~----------------~~~~~~~~~~~~~~~~ 83 (387)
T d1k3ia3 21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR----------------TVTVTKHDMFCPGISM 83 (387)
T ss_dssp CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC----------------EEEECSCCCSSCEEEE
T ss_pred ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeec----------------CCCCCCcccceeEEEE
Confidence 444555567887 66666642 1 367888887753321 0112234334456788
Q ss_pred CCCCCEEEEEeCC-CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC------CcEEEEECCCCce
Q 001363 405 SPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSR 477 (1092)
Q Consensus 405 spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~~~~~ 477 (1092)
.+||++++.|+.+ ..+.+||..++.-.. ...+... ..-..++..+||+ +++.|+.+ ..+.+||..+.+-
T Consensus 84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~-r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCCcEEEeecCCCcceeEecCccCcccc-ccccccc-ccccceeeecCCc--eeeeccccccccccceeeeecCCCCce
Confidence 9999999998655 579999998754221 1111111 1224567788998 67777643 3689999888754
Q ss_pred eEEEec---------CCcCe----EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--C------CCceEEEE
Q 001363 478 TYSFEG---------HGAPV----YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P------GLGCTRMA 536 (1092)
Q Consensus 478 ~~~~~~---------~~~~v----~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~------~~~i~~~~ 536 (1092)
...-.. +...+ ....+ ...++..++.+...+.+.+++..+......... . ...-.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (387)
T d1k3ia3 160 TSLPNAKVNPMLTADKQGLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 238 (387)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eecCCCcccccccccccceeeccceeEEE-EeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence 321100 00000 00001 122455666666666666666554432221100 0 00112222
Q ss_pred E-ccCCCEEEEEecCCCC----ceeEEEEeC---CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---------
Q 001363 537 Y-SANGRRLFSCGTSKEG----ESFLVEWNE---SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------- 599 (1092)
Q Consensus 537 ~-s~dg~~l~~~~~~~~~----~~~i~iwd~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------- 599 (1092)
+ ..+++.++.++..... .....+.+. ..................-.+....++++.+++|+.+
T Consensus 239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~ 318 (387)
T d1k3ia3 239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318 (387)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence 2 3467777777643211 111222222 1111111111100001122345566888888887743
Q ss_pred --CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 600 --HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 600 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.++.+||..+.+....-........-....+.+||+.++.|+.
T Consensus 319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1478899888765433222111111123446789999999874
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.82 E-value=0.0078 Score=67.61 Aligned_cols=203 Identities=11% Similarity=0.048 Sum_probs=119.5
Q ss_pred EEEEEeCCCcEEEEEC-CCCceeEEEecCCc----C------e-EEEeeccc--CCccEEEEEecCCeEEEEEcCCCCce
Q 001363 457 SVITCGDDKTIKVWDA-VTGSRTYSFEGHGA----P------V-YSLCPHAK--ENIHFIFSISVDGKIKAWLYDSLGAR 522 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~----~------v-~~i~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~ 522 (1092)
++++.+.++.+...|. ++|+.+.++..... . + +.+++... ....+++.++.|+.|.-.|..+++..
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~ 144 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence 3444555667777776 57888877642111 0 1 22333222 22347889999999999999999888
Q ss_pred EEecCCCC----ceEEEEEccCCCEEEEEecC--CCCceeEEEEeCCCCeEEEEEeeccc--------------------
Q 001363 523 VDYDAPGL----GCTRMAYSANGRRLFSCGTS--KEGESFLVEWNESEGAIKRTYQGLQL-------------------- 576 (1092)
Q Consensus 523 ~~~~~~~~----~i~~~~~s~dg~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~-------------------- 576 (1092)
..+..... .+++--.--++ .++.+... ....+.|+-+|..+|+++-.+.....
T Consensus 145 w~~~~~d~~~~~~~t~~P~v~~~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~ 223 (596)
T d1w6sa_ 145 WKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQK 223 (596)
T ss_dssp EEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCT
T ss_pred ccccccccccccccccCCcEECC-eEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccccc
Confidence 76643221 11111111133 34444321 12357899999999999877643210
Q ss_pred --------------cCC-ceEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEeCCCCCC--
Q 001363 577 --------------QHN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP-- 623 (1092)
Q Consensus 577 --------------~~~-~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~-- 623 (1092)
... .-..+++.+....++.+..+ ..+.-.|..+|+....++...+..
T Consensus 224 ~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd 303 (596)
T d1w6sa_ 224 GLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWD 303 (596)
T ss_dssp THHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccC
Confidence 001 12234667777777776432 347788999999988776432211
Q ss_pred -----CCceEEE-ccCC---CEEEEEeCCCeEEEEECCCCceeeec
Q 001363 624 -----ENPRICF-NKNG---TLLAVIANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 624 -----~v~~v~~-s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1092)
....+.. ..+| +.++....+|.+.++|..+++.+...
T Consensus 304 ~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~ 349 (596)
T d1w6sa_ 304 YAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (596)
T ss_dssp CCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence 1111111 2244 36777888999999999999877543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.77 E-value=0.03 Score=62.69 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=45.4
Q ss_pred CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 957 ~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
|.|.-||..+|+.+-+... ..++.+-.++..|.+++.|+.||.++-+|..+|+.+.++....
T Consensus 453 G~l~A~D~~TG~~~W~~~~--~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~ 514 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ceEEEEeCCCCceecccCC--CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC
Confidence 5677888888887655332 2233333345567888899999999999999999999987444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.025 Score=56.03 Aligned_cols=239 Identities=9% Similarity=-0.040 Sum_probs=142.8
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc----eeEEEecCC
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSFEGHG 485 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~ 485 (1092)
+|+.+... .|+..++.+.... .+......+.+++|.+..+. +..+-..++.|.--++.... ....+....
T Consensus 3 fLl~s~~~-~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 3 YLFFTNRH-EVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp EEEEECBS-SEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECCC-eEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 44444433 3888888765422 23234456778999988774 34444456677766664321 112222233
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
..+..+++.+.. +.+.++-...+.|.+.+++.................+++.|...+|+..... ....|...++...
T Consensus 77 ~~p~glAvD~~~-~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs 153 (266)
T d1ijqa1 77 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (266)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceEEEeecc-ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC--CCcceeEeccCCC
Confidence 456677775443 3455555677889999998776666555555667889999977777665422 2345777776554
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
......... ......+++.+.++.|+.+ ...+.|...++....................+++. ++.+..+-..++
T Consensus 154 ~~~~l~~~~---~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~ 229 (266)
T d1ijqa1 154 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (266)
T ss_dssp CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred ceecccccc---cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCC
Confidence 443333222 2457889999988877776 45678998898765554444433332334466665 334444444667
Q ss_pred eEEEEECCCCceeeecc
Q 001363 645 RIKILETPESNSVDAAG 661 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~ 661 (1092)
.|...+..++.....+.
T Consensus 230 ~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 230 AIFSANRLTGSDVNLLA 246 (266)
T ss_dssp EEEEEETTTCCCCEEEE
T ss_pred eEEEEECCCCcceEEEE
Confidence 88888877765554444
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.75 E-value=0.013 Score=65.38 Aligned_cols=194 Identities=13% Similarity=0.120 Sum_probs=119.9
Q ss_pred CeEEEEEcCCceeeEEecCCC------------------------------CCe-EEEEEcCCCCCEEEEEeC-------
Q 001363 823 GVISLYIVMTFKTILTIMPPS------------------------------PTA-TSLAFNPHDNNVIAIGMD------- 864 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~~~~~~~------------------------------~~i-~~l~~s~~d~~~lasg~~------- 864 (1092)
|.|.-+|..+|+.+-++..-. ..+ ..+++.+ ...++..+..
T Consensus 178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~ 256 (560)
T d1kv9a2 178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNR 256 (560)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCH
T ss_pred ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCccccc
Confidence 679999999999988764210 011 2256666 5555554332
Q ss_pred ------------CCcEEEEEcCCceeeEeeccccCCeE---------EEEEcCCC---CEEEEEeCCCcEEEEEcCCCce
Q 001363 865 ------------DSTILIYNARSSEVISKLEGHSKRVT---------GLVFSDAL---NILVSSGGDAQIFVWDVDGWGI 920 (1092)
Q Consensus 865 ------------dg~v~iwd~~~~~~~~~l~~h~~~V~---------~l~~spdg---~~l~s~s~Dg~I~iwd~~~~~~ 920 (1092)
...|.-.|+++|+.+..++.....+. -+....++ +.++.++.+|.+.++|-.+++.
T Consensus 257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~ 336 (560)
T d1kv9a2 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (560)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence 23577778999998776654222221 12222244 3677788999999999999875
Q ss_pred eeeeeeecC-----------------------------CCCcCCCCCceEEEEccCCCEEEE-Ee---------------
Q 001363 921 QTCRSLQTP-----------------------------DGVMTLAPSETHIQFHKDQTRFLL-VH--------------- 955 (1092)
Q Consensus 921 ~~~~~~~~~-----------------------------~~~~~~~~~v~~l~~s~dg~~la~-~~--------------- 955 (1092)
......... .+... ...-...+++|+..++.+ ..
T Consensus 337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~G-g~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~ 415 (560)
T d1kv9a2 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG-AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (560)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC-SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred cccccccccccccccChhhccccccccccccccceeeeecccc-ccccccccccCCCCeeecccccccceeecccccccc
Confidence 432211100 00000 001135678888887776 22
Q ss_pred ---------------------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEE
Q 001363 956 ---------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus 956 ---------------------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1014 (1092)
.+.+.-||+.+|+.+-+...+ .+..+-.++-.|.++++|+.||.++-+|..+|+.+.
T Consensus 416 ~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW 493 (560)
T d1kv9a2 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (560)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeE
Confidence 145778899999887664432 222222345567788899999999999999999999
Q ss_pred eecccc
Q 001363 1015 RILSTA 1020 (1092)
Q Consensus 1015 ~~~~~~ 1020 (1092)
++....
T Consensus 494 ~~~l~~ 499 (560)
T d1kv9a2 494 QFEAQS 499 (560)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 988443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.71 E-value=0.012 Score=65.77 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=51.9
Q ss_pred CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCe-EEEEEcCCCC-E
Q 001363 823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-I 900 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~-~ 900 (1092)
|.+.-||+.+++.+.+...... ...-.++- .+.++++|+.||.++-+|..+|+.+.++.-..+.. .-+.+..||+ +
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~-~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccCCCC-CCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 4678899999998876543221 11111222 35588889999999999999999998876322111 1145556885 5
Q ss_pred EEEEe
Q 001363 901 LVSSG 905 (1092)
Q Consensus 901 l~s~s 905 (1092)
++..+
T Consensus 516 v~v~a 520 (560)
T d1kv9a2 516 VAIMA 520 (560)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.70 E-value=0.03 Score=55.18 Aligned_cols=223 Identities=13% Similarity=0.059 Sum_probs=139.2
Q ss_pred CCCcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
+...+..++|.+..+.|.... .++.|+..++.++.... .+......+..+++..-+.. +.++-...+.|.+.++.
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~d 109 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMD 109 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEecC
Confidence 445688899998887777664 56778888887654322 23233346788999876664 44455667899999987
Q ss_pred CCceeEEEecCCcCeEEEeecccCCccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.......+.........+++.|.. +.++.+-...+ .|..-+++...........-.....+++.+.++.|+.+..
T Consensus 110 g~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~-- 186 (263)
T d1npea_ 110 GTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA-- 186 (263)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET--
T ss_pred CceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC--
Confidence 665433333334567888886643 33444433323 3444456555444444334446678999998888877642
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
+.+.|...+.........+.+.. ....+++. +.+|+... ..+.|...|..+++.+..+..... .....++.
T Consensus 187 -~~~~I~~~~~~g~~~~~v~~~~~----~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v 258 (263)
T d1npea_ 187 -GTHRAECLNPAQPGRRKVLEGLQ----YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITI 258 (263)
T ss_dssp -TTTEEEEEETTEEEEEEEEECCC----SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEE
T ss_pred -CCCEEEEEECCCCCeEEEECCCC----CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEE
Confidence 35678888887665544444433 34567765 45565554 678899999999988776643332 23445554
Q ss_pred cc
Q 001363 631 NK 632 (1092)
Q Consensus 631 s~ 632 (1092)
.+
T Consensus 259 ~~ 260 (263)
T d1npea_ 259 AL 260 (263)
T ss_dssp EC
T ss_pred eC
Confidence 43
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.68 E-value=0.014 Score=62.80 Aligned_cols=249 Identities=12% Similarity=0.063 Sum_probs=136.4
Q ss_pred CceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.+..+++||||++++.+-+.+| .+++.|+.+|+.+.. .+ . ......++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i-----------------~--~~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL-----------------E--RVKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE-----------------E--EECSCCEEECTTSSEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-cc-----------------c--cccccceEEcCCCCEE
Confidence 3456678999997666655444 599999999986642 11 1 0112458999999988
Q ss_pred EEEeCC----------------CEEEEEEccCCCcccceEEEcccc--cceeEEEEecCCCcEEEEEEe-CCCcEEEE--
Q 001363 412 GVAYSK----------------HIVQLYAYHGGSDARQQLEIDAHV--GNVNDLAFSAPCKQISVITCG-DDKTIKVW-- 470 (1092)
Q Consensus 412 as~~~d----------------~~i~iwd~~~~~~~~~~~~~~~h~--~~v~~~~~s~d~~~l~l~s~~-~d~~i~vw-- 470 (1092)
+....+ ..|..|.+.++..-. ...+.... ..+..+..++|++++++.+.. .+....+|
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 765432 257777777654322 11233333 346677889999963333332 23344444
Q ss_pred ECCCCc--------eeEEEecCCcCeEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCCCCceEEEE
Q 001363 471 DAVTGS--------RTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMA 536 (1092)
Q Consensus 471 d~~~~~--------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~ 536 (1092)
|+.... ....+.........+.. .++.+++... .++.|...++..... ...+..+...+..-.
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~ 341 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN---EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE---ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred eCCCcccccccccceeEeecccccceEEEec---CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence 433221 11222222222222211 1222333322 235666667665433 222333444454445
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCce
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 612 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 612 (1092)
++..+.+|+..... ++...|++++..++.......... +.+..+...++...+...- .-.+++-+|+.+++.
T Consensus 342 ~~~~~~~lvl~~~~-~~~~~l~v~~~~~~~~~~~~~~~~---~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 342 ACVRSNFLVLCYLH-DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTEEEEEEEE-TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEECCEEEEEEEc-CCEeEEEEEECCCCcEEEecCCCC---ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 55556666655432 357789999999887765544333 5566555556655544322 336788899988754
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.68 E-value=0.0057 Score=65.18 Aligned_cols=125 Identities=10% Similarity=0.163 Sum_probs=79.4
Q ss_pred ceEEEEEccCCCEEEEEecCCC-------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-CcE
Q 001363 531 GCTRMAYSANGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-HVI 602 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-g~i 602 (1092)
++...+...+|+.++.++...+ ....+.+||+.+++..........+.......++.+++..++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 3444555668888887774321 12247799999886543322222111233456788999888887654 689
Q ss_pred EEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC------CeEEEEECCCCce
Q 001363 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETPESNS 656 (1092)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iw~~~~~~~ 656 (1092)
.+||..+......-..... ..-..++..+||++++.++.+ ..+.+||..+.+.
T Consensus 101 ~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp EEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred eEecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence 9999988776543322222 223467778899999998753 4688999887754
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.65 E-value=0.0055 Score=63.00 Aligned_cols=198 Identities=11% Similarity=0.114 Sum_probs=125.2
Q ss_pred EEEEec---CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcCeEEEeecccCCccEEEEEecCC------------
Q 001363 446 DLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDG------------ 509 (1092)
Q Consensus 446 ~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg------------ 509 (1092)
.+.|.. ||++ +++.-..+.+|-+-|+++.++.+.+.. ....+..+.....++..+++.++.+.
T Consensus 89 ~~S~TdGtyDGry-lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d 167 (459)
T d1fwxa2 89 HMSFTEGKYDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 167 (459)
T ss_dssp EEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccccCCccceeE-EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence 455544 7886 566777889999999999998775543 23445556665566667888776633
Q ss_pred ------eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC-----------CceeEEEE------------
Q 001363 510 ------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-----------GESFLVEW------------ 560 (1092)
Q Consensus 510 ------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-----------~~~~i~iw------------ 560 (1092)
.+.++|..+.+........ .....+.+++||+++++.+.+.+ ....+.++
T Consensus 168 ~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 168 VANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp GG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred hhhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence 3567788776665544332 24557899999999988764321 11223333
Q ss_pred -----------eCCCC---eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------eE
Q 001363 561 -----------NESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ------------LL 613 (1092)
Q Consensus 561 -----------d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~------------~~ 613 (1092)
|.... ..++.+... .....+.++|||+++++++ .+.++.|+|+++-. ..
T Consensus 247 k~~eingV~VVD~~~~~~~~v~~yIPVp----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~ 322 (459)
T d1fwxa2 247 DYQELNGVKVVDGRKEASSLFTRYIPIA----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 322 (459)
T ss_dssp CSEEETTEEEEECSGG--CSSEEEEEEE----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred CcEEeCCceeecccccCCcceeEEEecC----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence 32211 111122221 3456789999999998865 78999999986411 11
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
..... + ..-...+|+.+|.-..+..-|..|.-|++.
T Consensus 323 ~e~el--g-lgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 323 AEPEL--G-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp ECCBC--C-SCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred eeccc--C-cCccccccCCCceEEEEeeccceEEEEecc
Confidence 11111 1 123567888888766666779999999985
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.65 E-value=0.084 Score=58.91 Aligned_cols=382 Identities=11% Similarity=0.053 Sum_probs=192.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCc--------Ce-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--------PV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--------~v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 527 (1092)
.++.++.++.|.-.|.++|+.+.++..... .+ ..+++ .+..++.++.|+.+.-.|..+++.......
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~----~~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE----eCCceEEecCCCeEEEecccccceeeeecc
Confidence 466777889999999999999988742210 01 11122 124678889999999899998887654332
Q ss_pred CCCc----e--EEEEEcc--CCCEEEEEecCC---CCceeEEEEeCCCCeEEEEEeeccc--------------------
Q 001363 528 PGLG----C--TRMAYSA--NGRRLFSCGTSK---EGESFLVEWNESEGAIKRTYQGLQL-------------------- 576 (1092)
Q Consensus 528 ~~~~----i--~~~~~s~--dg~~l~~~~~~~---~~~~~i~iwd~~~~~~~~~~~~~~~-------------------- 576 (1092)
.... . ....+.+ .+..++..+... ...+.|.-+|..+|+.+-.+.....
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 1110 0 0011111 233333332211 2245688899999988776543220
Q ss_pred -----------------cCCce-EEEEEcCCCCEEEEEeC------------------------CCcEEEEECCCCceEE
Q 001363 577 -----------------QHNSV-SVVHFDTAKDQILAAGD------------------------DHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 577 -----------------~~~~v-~~~~~~~~~~~l~~~s~------------------------dg~i~iwd~~~~~~~~ 614 (1092)
....+ ..+++.+....++.+.. ...+.-.|..+|+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 00111 23567777777776541 2346778899999888
Q ss_pred EEeCCCCCCCC-------ceEEEc-cCCC---EEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccc
Q 001363 615 TIDAGGGLPEN-------PRICFN-KNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 615 ~~~~~~~~~~v-------~~v~~s-~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1092)
.++...+.... ..+.+. .++. .++..+.++.+.++|..+++.+....................
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~------ 379 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG------ 379 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC------
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccc------
Confidence 77654321111 111121 1332 566678899999999999987765443333332222211100
Q ss_pred cCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001363 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~ 763 (1092)
.........+ .....+.... ......|.......-...++.|+...+++...+....+|..
T Consensus 380 ---~~~~~~~~~~--~~~~~~~~~~--------------~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~ 440 (582)
T d1flga_ 380 ---RPVEREGQRP--PLPEPGQKHG--------------KAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTE 440 (582)
T ss_dssp ---CEEECTTCSC--CCCCTTCSSC--------------CCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEEC
T ss_pred ---cceecccccc--cccccccccc--------------ceEEECCCccCCcccccceecCCCCceeeeccccccccccc
Confidence 0000000000 0000000000 00000111001111223467777666666655533333321
Q ss_pred cCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCC
Q 001363 764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 842 (1092)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~ 842 (1092)
.... ..+. .........-+- ... .|.+.-+|+.+++.+.+...+
T Consensus 441 ~~~~------------------~~g~------------~~~~~~~~~~~~-----~~~~~G~l~AiD~~TG~i~W~~~~~ 485 (582)
T d1flga_ 441 EVSY------------------TKGS------------AYLGMGFRIKRM-----YDDHVGSLRAMDPVSGKVVWEHKEH 485 (582)
T ss_dssp CCCC------------------CTTS------------CCCCEEEEEEES-----CSSCSEEEEEECTTTCCEEEEEEES
T ss_pred cccc------------------cccc------------cccccCcccccc-----ccCCCCeEEEEcCCCCcEEeecCCC
Confidence 1100 0000 000001111000 001 367888999999888776543
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCCC-EEEEE
Q 001363 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALN-ILVSS 904 (1092)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~-~l~s~ 904 (1092)
..... -.++. .+.++++|+.||.++-+|.++|+.+.+++-.... -.-+.|..||+ +++..
T Consensus 486 ~p~~~-g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 486 LPLWA-GVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp SCCCS-CCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCcc-ceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 32221 11223 4568888999999999999999999887632211 11156667885 44443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.60 E-value=0.036 Score=61.68 Aligned_cols=116 Identities=6% Similarity=-0.107 Sum_probs=65.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceee
Q 001363 891 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 970 (1092)
Q Consensus 891 ~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~ 970 (1092)
..+++|+..++.....+....+....... ..+... ....+...+..........|.|.-+|+.+|+.+
T Consensus 390 ~~a~dP~~~~~yv~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~ 457 (571)
T d2ad6a1 390 VDSYDPESRTLYAGLNHICMDWEPFMLPY---------RAGQFF---VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK 457 (571)
T ss_dssp BCEEETTTTEEEEEEECEEEEEEECCCCC---------CTTSCC---CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred cceECCCCceEEEeccccccccccccccc---------cCCccc---cccceeeccccCCcccCCcccEEEeccCCCcee
Confidence 36788998888887776544333222100 000000 111222222211111112356888888888877
Q ss_pred eeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
-+...+. +..+-..+-.|.++++++.||.++-+|.++|+.+.++....
T Consensus 458 W~~~~~~--~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~ 505 (571)
T d2ad6a1 458 WTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eEcCCCC--CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCC
Confidence 6543322 11111223356688889999999999999999999887433
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.57 E-value=0.0021 Score=66.15 Aligned_cols=196 Identities=10% Similarity=0.067 Sum_probs=126.5
Q ss_pred EEEEe---cCCCEEEEEe--CCeEEEEEcCCceeeEEecC-CCCCeEEEEEcCC-CCCEEEEEeCCC-------------
Q 001363 807 CFALS---KNDAYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPH-DNNVIAIGMDDS------------- 866 (1092)
Q Consensus 807 ~~~~s---~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~-d~~~lasg~~dg------------- 866 (1092)
.+.+. +||+++.+.. +++|.+.|+.+.++.+.... ....+..+...++ ...+++.++.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 44454 4899999997 58899999999998665443 3345666665431 455777766532
Q ss_pred -----cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEEc-----------
Q 001363 867 -----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDV----------- 915 (1092)
Q Consensus 867 -----~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg---------------~I~iwd~----------- 915 (1092)
.+.++|..+.+...++.- .+....+++++||+++++.+.+. .+.+++.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 367889999888776653 34567799999999999887532 1333332
Q ss_pred ------------CCCc-eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eCCcEEEEEcCCceeee--------e
Q 001363 916 ------------DGWG-IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLK--------Q 972 (1092)
Q Consensus 916 ------------~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~~~--------~ 972 (1092)
.... ......+.... ....+.++|||++++++ -+.++.|+|++.-.... .
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVpK-------sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred cEEeCCceeecccccCCcceeEEEecCC-------CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence 2100 00011122222 34579999999999995 57899999996422110 0
Q ss_pred --eccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001363 973 --WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 973 --~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
-.....-....-+|..+|.-..|---|..|.-|++...
T Consensus 321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred EEeecccCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence 01112455667789888865555668999999998543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.52 E-value=0.12 Score=57.51 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=46.3
Q ss_pred CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 957 ~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
|.|.-+|+.+|+.+-+...++ ++.+-..+..|..+++|+.||.++-+|.++|+.+.++....
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~ 527 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCC
Confidence 467778888888876644332 23322345677888899999999999999999999988433
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.48 E-value=0.054 Score=52.40 Aligned_cols=229 Identities=12% Similarity=0.112 Sum_probs=143.2
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
.-.+|..+ +||.-+ ..++.|+|+++.+.++.+.+ ..+|..-.|-.+. .|+-.+ +..
T Consensus 68 AIMhP~~~-IiALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~ta 123 (327)
T d1utca2 68 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA 123 (327)
T ss_dssp EEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEESSSS-EEEEEC-SSE
T ss_pred hhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEEc--------------------CCCcEEEEecCCC-EEEEEc-CCc
Confidence 34568887 566544 46899999999988876432 3578888887654 444443 345
Q ss_pred EEEEEccCCCcccceEEEccccc----ceeEEEEecCCCcEEEEEE------eCCCcEEEEECCCCceeEEEecCCcCeE
Q 001363 420 VQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITC------GDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~l~l~s~------~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
|+=|++++... +...+..|.. .|..-..+++.+++ +++| +-.|.+.+|..+.+ .-+.++||.+...
T Consensus 124 VYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~ 199 (327)
T d1utca2 124 VYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 199 (327)
T ss_dssp EEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEE
T ss_pred eEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeE
Confidence 99999965442 3334555543 56677788899863 3333 12367889996654 4567888887776
Q ss_pred EEeecccCCcc-EEEEEe---cCCeEEEEEcCCCCc---e-----EEecCC----CCceEEEEEccCCCEEEEEecCCCC
Q 001363 490 SLCPHAKENIH-FIFSIS---VDGKIKAWLYDSLGA---R-----VDYDAP----GLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 490 ~i~~~~~~~~~-~l~s~~---~dg~i~vwd~~~~~~---~-----~~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
.+.+....... +++.+. ..+.+++.++..... . ..+..+ ..-..++..|+.-..++..+.
T Consensus 200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK---- 275 (327)
T d1utca2 200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 275 (327)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec----
Confidence 66654332222 333322 236788888866321 1 111111 223456777877777777764
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1092)
.|.++++|+.++.++..-+-.. ..|...+-..+..-+++...+|.|.
T Consensus 276 ~G~i~lyDleTgt~i~~nRIs~---~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 276 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CcEEEEEEcccccEEEEeecCC---CceEEeccCCCCceEEEECCCCeEE
Confidence 7789999999999987766544 5666555555555666666666554
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.41 E-value=0.017 Score=64.67 Aligned_cols=189 Identities=12% Similarity=0.045 Sum_probs=103.5
Q ss_pred eEEEEEcCCceeeEEecCCCC---------CeEEEEEcC--CCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC-----
Q 001363 824 VISLYIVMTFKTILTIMPPSP---------TATSLAFNP--HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----- 887 (1092)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~~~---------~i~~l~~s~--~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~----- 887 (1092)
.|...|..+++....++.... ......... .....++.++.+|.++++|..+|+.+........
T Consensus 284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~ 363 (573)
T d1kb0a2 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (573)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence 356667777776655443211 111222222 1124677888999999999999987654321100
Q ss_pred ------------------------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCC
Q 001363 888 ------------------------------RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 937 (1092)
Q Consensus 888 ------------------------------~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 937 (1092)
.-..++++|+..++.....+....++.....+... ...+......
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~ 438 (573)
T d1kb0a2 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ-----AGPGKPQSGT 438 (573)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC-----CCTTSTTGGG
T ss_pred cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeeccccccccc-----CCCCcccccc
Confidence 01124677777777777766666666554422111 0000000000
Q ss_pred CceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001363 938 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
......+ +++.-.....-|.+.-||+.+|+.+-+...+ .+...-..+-.|.+|++|+.||.++.+|..+|+.+.++.
T Consensus 439 ~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~--~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~ 515 (573)
T d1kb0a2 439 GWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (573)
T ss_dssp TCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCC--CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence 0000000 0000000011256788888888887664332 222222345578899999999999999999999999987
Q ss_pred ccc
Q 001363 1018 STA 1020 (1092)
Q Consensus 1018 ~~~ 1020 (1092)
...
T Consensus 516 ~~~ 518 (573)
T d1kb0a2 516 TGT 518 (573)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.078 Score=52.20 Aligned_cols=240 Identities=9% Similarity=-0.040 Sum_probs=144.8
Q ss_pred EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEccC
Q 001363 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHG 427 (1092)
Q Consensus 349 llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~ 427 (1092)
||.+-. ..|+-.++.+..... +......+.+++|.+..+.|.-.. ..+.|.--++..
T Consensus 4 Ll~s~~--~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~ 61 (266)
T d1ijqa1 4 LFFTNR--HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61 (266)
T ss_dssp EEEECB--SSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred EEEECC--CeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecC
Confidence 444432 458888887655332 222445678999999888887664 456677666654
Q ss_pred CCcccceE-EEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEE-
Q 001363 428 GSDARQQL-EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI- 505 (1092)
Q Consensus 428 ~~~~~~~~-~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~- 505 (1092)
........ .+......+..+++.+.++. +.++-...+.|.+.++........+.........+++++. .|.++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~~ 139 (266)
T d1ijqa1 62 AHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDW 139 (266)
T ss_dssp ------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEecc
Confidence 22111111 12233345778999877775 4455566788999998877665555555566788888654 33444443
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001363 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1092)
Q Consensus 506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1092)
+..+.|...+++...........-.....+++.+.++.|+.+.. ..+.|...++............. .......++
T Consensus 140 ~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~-~~~~p~~la 215 (266)
T d1ijqa1 140 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLA 215 (266)
T ss_dssp SSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEE
T ss_pred CCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCC-cccccEEEE
Confidence 23456766676655544444444456789999999888887743 25578888886654433333322 113355666
Q ss_pred EcCCCCEEEEE-eCCCcEEEEECCCCceEEEEeC
Q 001363 586 FDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 586 ~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
+. +.+|+.+ ..++.|...+..++.....+..
T Consensus 216 v~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 216 VF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence 65 3455554 4667888888877776665543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.07 E-value=0.072 Score=57.05 Aligned_cols=248 Identities=9% Similarity=0.003 Sum_probs=126.7
Q ss_pred CCCcEEEEEECCCCCEEEEE-eCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-------
Q 001363 395 PGVSVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG------- 462 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~------- 462 (1092)
+.-.+..+++|||++++|.+ +.+ ..+++.|+.+|+.+.. .+. ......++|++|++. ++.+.-
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~-~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG-MFYNAYPQQDGKS 197 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE-EEEEECCCCSSCC
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--ccc--cccccceEEcCCCCE-EEEEEeccccCcc
Confidence 33445567889999999976 222 3799999999875432 121 112357899999995 223321
Q ss_pred --------CCCcEEEEECCCCcee--EEEecCCcC--eEEEeecccCCccEEEEEec---CCeEEEE--EcCCCCc----
Q 001363 463 --------DDKTIKVWDAVTGSRT--YSFEGHGAP--VYSLCPHAKENIHFIFSISV---DGKIKAW--LYDSLGA---- 521 (1092)
Q Consensus 463 --------~d~~i~vwd~~~~~~~--~~~~~~~~~--v~~i~~~~~~~~~~l~s~~~---dg~i~vw--d~~~~~~---- 521 (1092)
....|..|.+.+...- ..+.....+ +..+.. +.++++++.... ++...+| |+.....
T Consensus 198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~--s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~ 275 (430)
T d1qfma1 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (430)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccCCcceEEEEECCCCccccccccccccCCceEEeeec--cCCcceeeEEeeccCCccEEEEEeeCCCccccccc
Confidence 1225777887776432 333333333 333333 556667654332 3334444 4432211
Q ss_pred ----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEE
Q 001363 522 ----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1092)
Q Consensus 522 ----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1092)
............ ... .+|..++.-+.....++.|...++..... ...+-.+. ...+..-.+...+.+|+.
T Consensus 276 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~--~~~~~~~~~~~~~~~lvl 351 (430)
T d1qfma1 276 ILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH--EKDVLEWVACVRSNFLVL 351 (430)
T ss_dssp SCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCC--SSCEEEEEEEETTTEEEE
T ss_pred ccceeEeecccccceE-EEe-cCCceeecccCcccccceeEEecCCCCccccceEEeccc--CcceeeeEEEEECCEEEE
Confidence 111111122222 222 23344444333333456677777765432 12222221 134444344444556665
Q ss_pred Ee-CCC--cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC----CeEEEEECCCCc
Q 001363 596 AG-DDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 655 (1092)
Q Consensus 596 ~s-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~~ 655 (1092)
.. .++ .|++++..++.......... ..+..+...++...+.....+ .++.-+|+.+++
T Consensus 352 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 352 CYLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 43 444 47889998887765544332 223334434555544443332 678888887764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.92 E-value=0.21 Score=48.29 Aligned_cols=258 Identities=11% Similarity=0.124 Sum_probs=143.2
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
...|.+.|+..+.......- ...+.-.+|..+.++.-+ ..++.+||+++.+.+........ |.--.|-.
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi------~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~---VvfWkWis- 112 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWIS- 112 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEESS-
T ss_pred CceEEEEECCCCCcceeccc------chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC---cEEEEecC-
Confidence 56788899876653322211 223445788887776655 56899999999999999887643 55566654
Q ss_pred CCEEEEEeCCCeEEEEECCCC-ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 634 GTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 634 ~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
.+.|+..+. ..++-|+++.. .+...+..|..
T Consensus 113 ~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~----------------------------------------------- 144 (327)
T d1utca2 113 LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSS----------------------------------------------- 144 (327)
T ss_dssp SSEEEEECS-SEEEEEESSSSCCCEEEEECCGG-----------------------------------------------
T ss_pred CCEEEEEcC-CceEEEcccCCCCchhhhhhccc-----------------------------------------------
Confidence 445555554 58999998532 12211111110
Q ss_pred eccccccCccccccccCCccccccEEEEEEecCCcEEEEeec-------CCeeEEEeecCCCc-CcCcccccccCCcccc
Q 001363 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-------NGVHLMWRWPRNDL-TLSTEATTKVPPRLYQ 784 (1092)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~ 784 (1092)
-....|-....+++.++++..+- .|.+.+|..+.... ..+|...
T Consensus 145 -------------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa--------- 196 (327)
T d1utca2 145 -------------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA--------- 196 (327)
T ss_dssp -------------------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEE---------
T ss_pred -------------------ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceee---------
Confidence 01223444445555555443321 25566666544311 0111110
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---e-----eEEe-cC---CCCCeEEEEEc
Q 001363 785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---T-----ILTI-MP---PSPTATSLAFN 852 (1092)
Q Consensus 785 ~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---~-----~~~~-~~---~~~~i~~l~~s 852 (1092)
+.....+.+..+...+.|++. .+ ...++++|.++.+.. . ...+ -. ..+-..++.+|
T Consensus 197 -----~F~~~~~~g~~~~~~lf~fa~--r~-----~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs 264 (327)
T d1utca2 197 -----SFAQFKMEGNAEESTLFCFAV--RG-----QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 264 (327)
T ss_dssp -----EEEEECCTTCSSCEEEEEEEE--EE-----TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE
T ss_pred -----eeEEEEcCCCCCCceEEEEEE--CC-----CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee
Confidence 122222222112222222221 10 013678898886421 1 1111 11 23456788888
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEE
Q 001363 853 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911 (1092)
Q Consensus 853 ~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 911 (1092)
+ .-.++..-+.-|.+++||++++.++..-+--.+.|...+-..+..=++....+|.|.
T Consensus 265 ~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 265 E-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp T-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred c-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 8 667888999999999999999999877665666666555555544555555666554
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.14 E-value=0.0019 Score=47.75 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhcc
Q 001363 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSS 59 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1092)
++|+-+=|++||..+||.+++.+|.+|..+.++ ...-...+|+-+|..++.+-.+
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK 63 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence 678999999999999999999999999988765 5666677888888888776444
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.81 E-value=2.3 Score=42.55 Aligned_cols=198 Identities=12% Similarity=0.127 Sum_probs=113.4
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEc------CCCCCEEEEEe--CCC--cEEEEEcCC-ceeeE
Q 001363 813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN------PHDNNVIAIGM--DDS--TILIYNARS-SEVIS 880 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s------~~d~~~lasg~--~dg--~v~iwd~~~-~~~~~ 880 (1092)
+..+++... .+-|.+||++ |+.++.+. .+.+..+..- . ...-+++++ .++ +|.+|.+.. ...+.
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~-~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNG-KKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETT-EEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCC-cceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 344555444 3559999985 77777764 3455554432 2 223344454 223 677887753 22333
Q ss_pred eeccc-------cCCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEcCCCc--eeeeeeeecCCCCcCCCCCceEEEEccC
Q 001363 881 KLEGH-------SKRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 881 ~l~~h-------~~~V~~l~~--spd-g~-~l~s~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
.+... ...+..+|+ ++. |. +++....+|.+..|.+.... ......++.+.-. ..+..|++.+.
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde 190 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCC
Confidence 33321 124677777 664 44 45666778999988874321 1222333333222 25889999999
Q ss_pred CCEEEEEeCC-cEEEEEcC-----CceeeeeeccC-CCCCEEEEEEe--cCCC-EEEEEE-CCCcEEEEEcCC-CceEEe
Q 001363 948 QTRFLLVHET-HLAIYEAE-----ELTCLKQWFPI-SSVPISQATFS--CDCR-MVFTSF-VDGTLSIHEASN-LEVQCR 1015 (1092)
Q Consensus 948 g~~la~~~d~-~i~lwd~~-----~~~~~~~~~~~-h~~~v~~l~fs--~dg~-~l~t~~-~Dg~i~vwd~~~-~~~~~~ 1015 (1092)
...|.++.++ .+..+++. .+..+.....+ ....+-.++.- .++. ||++++ .+++..|||..+ ...+.+
T Consensus 191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~ 270 (353)
T d1h6la_ 191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD 270 (353)
T ss_dssp TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence 9999998654 45555543 12222221222 25677777643 3433 555444 678999999987 477777
Q ss_pred ecc
Q 001363 1016 ILS 1018 (1092)
Q Consensus 1016 ~~~ 1018 (1092)
|..
T Consensus 271 F~i 273 (353)
T d1h6la_ 271 FQI 273 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.34 E-value=2.3 Score=42.73 Aligned_cols=160 Identities=9% Similarity=0.104 Sum_probs=90.5
Q ss_pred eeEEEEecCCCcEEEEEEe------------CCCcEEEEECCCCcee-EEEecCCc-------CeEEEeecccCCcc-EE
Q 001363 444 VNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRT-YSFEGHGA-------PVYSLCPHAKENIH-FI 502 (1092)
Q Consensus 444 v~~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~~~~~-~~~~~~~~-------~v~~i~~~~~~~~~-~l 502 (1092)
--+++..|||. .+++++ ..|.|.++|+.+.... ..+..... ....+.+....++. +|
T Consensus 37 ~EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L 114 (340)
T d1v04a_ 37 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 114 (340)
T ss_dssp CCEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence 34567777776 444443 1488999998765432 22221111 12333333334444 34
Q ss_pred EEEe---cCCeEEEEEcCCCCceEE----ecC-CCCceEEEEEccCCCEEEEEecC-------------CCCceeEEEEe
Q 001363 503 FSIS---VDGKIKAWLYDSLGARVD----YDA-PGLGCTRMAYSANGRRLFSCGTS-------------KEGESFLVEWN 561 (1092)
Q Consensus 503 ~s~~---~dg~i~vwd~~~~~~~~~----~~~-~~~~i~~~~~s~dg~~l~~~~~~-------------~~~~~~i~iwd 561 (1092)
++.. ...+|.++++........ ... .......+++..+|..+++--.. +...+.+.-||
T Consensus 115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 4442 456788888765554332 222 22357889999999888873210 11234455565
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~ 611 (1092)
.. +......+. ...+.++++|++++|+++ +..+.|++|++....
T Consensus 195 ~~--~~~~~~~~l----~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 195 PN--DVRVVAEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp SS--CEEEEEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CC--ceEEEcCCC----CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 43 333233332 467899999999888765 467789999887543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.63 E-value=1.4 Score=44.69 Aligned_cols=186 Identities=7% Similarity=-0.029 Sum_probs=105.6
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
...-+++++....+++++.++ +.+.....-...... ........... .-..|..++|+.|
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~-----------~~~~~~~~~~~------~ip~v~~vafs~d-- 97 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS-----------DSTPLTFKWEK------EIPDVIFVCFHGD-- 97 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS-----------SSCCCCCSEEE------ECTTEEEEEEETT--
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhc-----------cCCCCcceecc------CCCCeEEEEeeCC--
Confidence 455678888888788777775 445443211000000 00000001111 1225788999755
Q ss_pred EEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc-----ccCCeE
Q 001363 816 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-----HSKRVT 890 (1092)
Q Consensus 816 ~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-----h~~~V~ 890 (1092)
.++...++.+..++..+.............+..+..+| ..++....+|.+.++++..++......+ -.+.+.
T Consensus 98 ~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~ 174 (381)
T d1xipa_ 98 QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL 174 (381)
T ss_dssp EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCce
Confidence 57777778888888876554444444456788888887 3566677899999999988764322211 235688
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEE-EcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 891 GLVFSDALNILVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 891 ~l~~spdg~~l~s~s~Dg~I~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
+++|++.|+.++++..++ ..+- ++.. ...+..+... ...+.++.|-.+..++++
T Consensus 175 ~v~ws~kgkq~v~~~g~~-~q~k~~i~~-----~~~~~~p~~~---~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 175 AVLLKDRSFQSFAWRNGE-MEKQFEFSL-----PSELEELPVE---EYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp EEEETTSCEEEEEEETTE-EEEEEEECC-----CHHHHTSCTT---TSEEEEEEESSSSEEEEE
T ss_pred EEEEeCCcEEEEEeCCCc-eeeccCCCC-----ccccCCCcCC---CcceeEEEEecCceEEEE
Confidence 888888888887764332 1111 1111 0111111111 124778888877777776
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.28 E-value=2.3 Score=43.16 Aligned_cols=183 Identities=10% Similarity=0.081 Sum_probs=108.2
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCc-----------eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001363 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTF-----------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~-----------~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1092)
....-+++++...+++.|+...+.|..++.- ...... .-..|..++|+. | .|++. .++.+..+
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~-d--~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG-D--QVLVS-TRNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET-T--EEEEE-ESSEEEEE
T ss_pred cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC-C--EEEEE-eCCCEEEE
Confidence 3456788999888888888777888775321 111111 123689999975 3 45544 45668888
Q ss_pred EcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEE
Q 001363 872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 872 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 951 (1092)
+..+-........-..++..+.++|. .++....++.+.++++..+..... ..... .....+.+.+++|++.|+.+
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~--~~~v~-~~~~~~~~~~v~ws~kgkq~ 185 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL--AQNVT-SFDVTNSQLAVLLKDRSFQS 185 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE--EESEE-EEEECSSEEEEEETTSCEEE
T ss_pred EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccc--cCCcc-eEEecCCceEEEEeCCcEEE
Confidence 77664333333334566888888775 566677889999999988753321 11000 00111357888899888888
Q ss_pred EEEeCCcEEEE-EcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001363 952 LLVHETHLAIY-EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 952 a~~~d~~i~lw-d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
+++..+...+- ++.....+.. .......|.++.|..+..++++-+
T Consensus 186 v~~~g~~~q~k~~i~~~~~~~~-p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 186 FAWRNGEMEKQFEFSLPSELEE-LPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp EEEETTEEEEEEEECCCHHHHT-SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEeCCCceeeccCCCCccccCC-CcCCCcceeEEEEecCceEEEEEC
Confidence 88644433332 1111111110 011345788999988777777653
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.84 E-value=5.3 Score=39.83 Aligned_cols=193 Identities=15% Similarity=0.167 Sum_probs=107.2
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc----cCCccEEEEEe--cC--CeEEEEEcCCCCceE-EecC
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA----KENIHFIFSIS--VD--GKIKAWLYDSLGARV-DYDA 527 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~----~~~~~~l~s~~--~d--g~i~vwd~~~~~~~~-~~~~ 527 (1092)
+++....++-|.+||+ .|+.++.+. .+.++.+.... ......++.++ .+ .+|.+|.+....... .+..
T Consensus 42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 5666666767999997 488887664 35566655321 12222344444 22 358888776433322 2222
Q ss_pred C-------CCceEEEEE--ccC-CCEEEEEecCCCCceeEEEEeC---CCC----eEEEEEeeccccCCceEEEEEcCCC
Q 001363 528 P-------GLGCTRMAY--SAN-GRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK 590 (1092)
Q Consensus 528 ~-------~~~i~~~~~--s~d-g~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1092)
. ...+..+|+ ++. |...+.... . .+.+..|.+ ..+ +.++.+.. ...+..|.+....
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k--~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde~ 191 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-K--EGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDEY 191 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-S--SSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETTT
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEc-C--CceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCCC
Confidence 1 123566776 554 544444432 2 445666544 333 33444443 2578999999999
Q ss_pred CEEEEEeCCCcEEEEECCC-----CceEEEEeCCCCCCCCceEEEc--cC--CCEEEEEeCCCeEEEEECCCC-ceeee
Q 001363 591 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFN--KN--GTLLAVIANENRIKILETPES-NSVDA 659 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--~~--~~~l~~~~~dg~i~iw~~~~~-~~~~~ 659 (1092)
..|+.+-++..+..++.+. +..+.......-...+-.++.- ++ |-++++.-.+++..+|+.... ..+..
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~ 270 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD 270 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence 9999999887776666542 2222222221122345566543 23 334444445789999998764 34433
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=1.4 Score=43.03 Aligned_cols=225 Identities=11% Similarity=0.064 Sum_probs=106.2
Q ss_pred CeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCC---------CcEEEEEcCCceee--EeeccccCCe
Q 001363 823 GVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARSSEVI--SKLEGHSKRV 889 (1092)
Q Consensus 823 g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~~~~~--~~l~~h~~~V 889 (1092)
..+.+||..+++- +..+..+...-..+.+ ++++++.|+.. ..+.+||..+.+.. ..+..-...-
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~ 95 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 95 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEE---CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence 3588999887643 3223322222222222 45666666531 36778888765432 2221111111
Q ss_pred EEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-e-----CCc
Q 001363 890 TGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-----ETH 958 (1092)
Q Consensus 890 ~~l~~spdg~~l~s~s~Dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-----d~~ 958 (1092)
.++. .+++.++.++.++. ...++..+............ .. -.++. ..++.+++.+ . ...
T Consensus 96 ~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--r~-----~~~~~-~~~~~~~~~GG~~~~~~~~~ 165 (288)
T d1zgka1 96 GVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR--RI-----GVGVA-VLNRLLYAVGGFDGTNRLNS 165 (288)
T ss_dssp EEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC--CB-----SCEEE-EETTEEEEECCBCSSCBCCC
T ss_pred eccc--cceeeEEecceecccccceeeeeccccCccccccccccc--cc-----cceee-eeeecceEecCcccccccce
Confidence 2222 25666666655443 44566666442221111110 00 11222 2344444443 2 245
Q ss_pred EEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeeccccccCCCCccccccc
Q 001363 959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1033 (1092)
Q Consensus 959 i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1033 (1092)
+..||..+.+............-.+ ....+++.++.++.+ .....+|..+......- ..+.. .. .
T Consensus 166 ~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~----r~-~ 235 (288)
T d1zgka1 166 AECYYPERNEWRMITAMNTIRSGAG-VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA----PMKHR----RS-A 235 (288)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC----CCSSC----CB-S
T ss_pred EEEeecccccccccccccccccccc-ccceeeeEEEecCccccccccceeeeeecceeeeccc----CccCc----cc-c
Confidence 8889987765443221111111112 223456666666655 34667777766544211 11111 11 1
Q ss_pred eEEEECCCCCCEEEEEeCCCc-----EEEEecCCCCCccccCCCCC
Q 001363 1034 HAIAAHPLKPTQFAVGLTNGE-----VYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus 1034 ~~~~~~p~d~~~l~~~~~dg~-----v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
.+++.. ++++++.|+.++. |.+||+.. .+|...++..
T Consensus 236 ~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p 277 (288)
T d1zgka1 236 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVTRMT 277 (288)
T ss_dssp CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEECS
T ss_pred eEEEEE--CCEEEEEecCCCCeecceEEEEECCC--CEEEECCCCC
Confidence 223333 3688888876653 67888854 4688775543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.91 E-value=4.7 Score=42.22 Aligned_cols=113 Identities=11% Similarity=0.082 Sum_probs=63.0
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC---CCEEEEE-e------
Q 001363 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLLV-H------ 955 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d---g~~la~~-~------ 955 (1092)
-...++|+|.|||++|++--..|.|++++..+++.....-+........-......++|+|+ ..++..+ .
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 35678999999999998765579999998887664432222111111111135778999986 3444331 0
Q ss_pred -C----Cc--EEEEEcCCce-------ee-eeeccCCCCCEEEEEEecCCCEEEEEEC
Q 001363 956 -E----TH--LAIYEAEELT-------CL-KQWFPISSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 956 -d----~~--i~lwd~~~~~-------~~-~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
+ +. +..+...... .+ .............|.|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 1 11 2233322211 11 1111111234568999999998887764
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.27 E-value=5.9 Score=35.33 Aligned_cols=153 Identities=8% Similarity=0.056 Sum_probs=85.4
Q ss_pred cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE--EEecCCcCeEEE--------eecccCCccEEEEEec-CCe
Q 001363 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGAPVYSL--------CPHAKENIHFIFSISV-DGK 510 (1092)
Q Consensus 442 ~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~i--------~~~~~~~~~~l~s~~~-dg~ 510 (1092)
-+|.++++ |++. .+.+|+......+|-++.|+... .+.+ -+.|+.+ .+. .++..-++++.. .|.
T Consensus 104 vRI~S~~y--ddk~-vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI~~d~I~G~g~~-~g~~~sfF~adl~SG~ 178 (313)
T d2hu7a1 104 MRILSGVD--TGEA-VVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFF-GGGRVSLFTSNLSSGG 178 (313)
T ss_dssp BEEEEEEE--CSSC-EEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEE-ETTEEEEEEEETTTEE
T ss_pred EEEEEeee--cCce-EEEecccCCceEEEEEeCCceeeeccCCC-cceEEeccCCeEEEEeee-cCCcceEEEEecccCC
Confidence 34555554 5665 67777777778888888886533 2221 1223333 221 111122333333 555
Q ss_pred EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE-Eeecc---ccCCceEEEEE
Q 001363 511 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQ---LQHNSVSVVHF 586 (1092)
Q Consensus 511 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~---~~~~~v~~~~~ 586 (1092)
+++++ ...+.++...+.++.+. ++.-..-. +....-+|+++++..+. +.... ...-.|.-+-+
T Consensus 179 lri~t-----------pkeGS~~~ay~~~gnKV-~sdyEt~g-Esywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y 245 (313)
T d2hu7a1 179 LRVFD-----------SGEGSFSSASISPGMKV-TAGLETAR-EARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGY 245 (313)
T ss_dssp EEEEC-----------CSSEEEEEEEECTTSCE-EEEEEESS-CEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEE
T ss_pred EEEec-----------CCCCcccceeEccCcee-eeccCCCC-ceEEEEEecccCceeeeecCcccceeecceEEEeeee
Confidence 55553 34456666666666555 55444333 34444669987765432 22211 01234555678
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceEE
Q 001363 587 DTAKDQILAAGDDHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 587 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1092)
.|+++.++.+-.||.-++|. +|+.+.
T Consensus 246 ~Pdd~L~iiakrdG~s~lF~--nGk~in 271 (313)
T d2hu7a1 246 LPDGRLAVVARREGRSAVFI--DGERVE 271 (313)
T ss_dssp CTTSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred CCCCcEEEEEecCCchheee--cceEec
Confidence 99999989999999999887 455543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.50 E-value=5.2 Score=41.89 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=38.2
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee--Eeec------cccCCeEEEEEcCC
Q 001363 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLE------GHSKRVTGLVFSDA 897 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~------~h~~~V~~l~~spd 897 (1092)
...++|+|.| |++++++--..|.|++++..+++.. ..+. .-.+....|+|+|+
T Consensus 27 ~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 4678999999 8888886655799999998776532 2221 12346788999985
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.97 E-value=7.4 Score=34.67 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=98.6
Q ss_pred EEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee--Eeecccc-------CCeEEEEE
Q 001363 825 ISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHS-------KRVTGLVF 894 (1092)
Q Consensus 825 i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h~-------~~V~~l~~ 894 (1092)
+.+-++.....-..+.... -.|.+++.. |.+.+++|+....+.+|-++.|+.. ..+.+.+ +-|..+.+
T Consensus 84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~ 161 (313)
T d2hu7a1 84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF 161 (313)
T ss_dssp EEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred EEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence 4455554222223333333 456677765 6789999999999999999988743 3333321 22333332
Q ss_pred -cCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE----eCCcEEEEEcCCce
Q 001363 895 -SDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELT 968 (1092)
Q Consensus 895 -spdg~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~~i~lwd~~~~~ 968 (1092)
.+..+-++++.- .|.++|++-..| .+.....+++++. ++. .+....-+|.++++
T Consensus 162 ~~g~~~sfF~adl~SG~lri~tpkeG-------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~ 221 (313)
T d2hu7a1 162 FGGGRVSLFTSNLSSGGLRVFDSGEG-------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGS 221 (313)
T ss_dssp EETTEEEEEEEETTTEEEEEECCSSE-------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred ecCCcceEEEEecccCCEEEecCCCC-------------------cccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence 222233444443 455555554442 3667777888777 432 22233356888776
Q ss_pred eeeeeccCC------CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceE
Q 001363 969 CLKQWFPIS------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus 969 ~~~~~~~~h------~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~ 1013 (1092)
.-+.-+++. .-.|+-+-+.||+++++.+-.||.-+++. +|+.+
T Consensus 222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~i 270 (313)
T d2hu7a1 222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERV 270 (313)
T ss_dssp EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEE
T ss_pred eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEe
Confidence 555434332 45677777999999988899999999986 55554
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.17 E-value=5.1 Score=38.72 Aligned_cols=186 Identities=11% Similarity=0.012 Sum_probs=88.4
Q ss_pred CCCEEEEEe-----C-----CeEEEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEEcCC
Q 001363 813 NDAYLFSAS-----G-----GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARS 875 (1092)
Q Consensus 813 dg~~l~~~s-----d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~ 875 (1092)
++++++.|+ + ..+.+||..+.+.... +......-.++.+ ++++++.|+.++ ....++..+
T Consensus 50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~---~~~i~~~gg~~~~~~~~~~~~~~~~~ 126 (288)
T d1zgka1 50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER 126 (288)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecccc---ceeeEEecceecccccceeeeecccc
Confidence 566666553 1 3477888876544322 2211112223333 566666665544 344566665
Q ss_pred ceeeEeec--cccCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC
Q 001363 876 SEVISKLE--GHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 876 ~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
..-...-. ........+. .+++.++.++.+ ..+..||...++........... ...+. ...++
T Consensus 127 ~~~~~~~~~~~~r~~~~~~~--~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~-~~~~~ 196 (288)
T d1zgka1 127 DEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR-------SGAGV-CVLHN 196 (288)
T ss_dssp TEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC-------BSCEE-EEETT
T ss_pred Cccccccccccccccceeee--eeecceEecCcccccccceEEEeecccccccccccccccc-------ccccc-cceee
Confidence 44221111 1111111122 244556655543 34788888775533321111111 11122 22344
Q ss_pred CEEEE-EeC-----CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCC-----cEEEEEcCCCce
Q 001363 949 TRFLL-VHE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEV 1012 (1092)
Q Consensus 949 ~~la~-~~d-----~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg-----~i~vwd~~~~~~ 1012 (1092)
.+++. +.+ .....||..+.+....-. ....+....+...++++++.|+.++ .+.+||+.+...
T Consensus 197 ~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 270 (288)
T d1zgka1 197 CIYAAGGYDGQDQLNSVERYDVETETWTFVAP-MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 270 (288)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred eEEEecCccccccccceeeeeecceeeecccC-ccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence 44444 322 357788887665443211 1122222222334788888887654 378899998753
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.84 E-value=0.68 Score=39.88 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=47.0
Q ss_pred hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccc
Q 001363 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHEL 129 (1092)
Q Consensus 72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 129 (1092)
++|.|+-+.|+||+..|...+|..++++.-..+.....+++++|..+....+..+++.
T Consensus 45 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~ 102 (149)
T d2nxpa1 45 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNET 102 (149)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHH
Confidence 8999999999999999999999999998655554445677888888877766655543
|