Citrus Sinensis ID: 001367
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1091 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WV90 | 1120 | Topless-related protein 1 | yes | no | 0.959 | 0.934 | 0.544 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.984 | 0.949 | 0.538 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.971 | 0.933 | 0.498 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.957 | 0.923 | 0.467 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.967 | 0.953 | 0.468 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.263 | 0.211 | 0.274 | 8e-19 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.428 | 0.306 | 0.214 | 1e-14 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.467 | 0.405 | 0.222 | 9e-14 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.231 | 0.340 | 0.254 | 2e-11 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.460 | 0.298 | 0.225 | 3e-11 |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function desciption |
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Score = 1185 bits (3066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 612/1123 (54%), Positives = 781/1123 (69%), Gaps = 76/1123 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD KA++IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C+L G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
Q T SP + W S S + AVS ++L P+ +A +D P D
Sbjct: 240 QPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPSGD 299
Query: 268 SDILSEKS-PVRILNEQASTV-----TYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321
SD +S+++ P+ I +E + V T+PG ++ + F++ D
Sbjct: 300 SDHVSKRTRPMGISDEVSLGVNMLPMTFPG-----------QAHGHNQTFKAP-----DD 343
Query: 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIG 381
PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L + FKVWD+
Sbjct: 344 LPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLS 402
Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHV
Sbjct: 403 KCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHV 462
Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501
G VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI F
Sbjct: 463 GGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQF 522
Query: 502 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561
IFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+GESF+VEWN
Sbjct: 523 IFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWN 582
Query: 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621
ESEGA+KRTYQG S+ VV FDT K++ LAAGDD IK WDM+ +QLLT IDA GG
Sbjct: 583 ESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGG 640
Query: 622 LPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN------- 673
L +PRI FNK G+LLAV AN+N IK++ + + LS K ++N
Sbjct: 641 LQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVER 700
Query: 674 PISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVK 732
P S V+ G+ NG N DVKP I+ E+ +KS+V K PS+C+SL LP ++
Sbjct: 701 PASVVSIPGM-NGDSRN---MVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMR 756
Query: 733 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV 792
KISRL + N G AI ALASN +HL+W+W RND + +AT +PP+ +QP G M
Sbjct: 757 VTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASG-ILMT 815
Query: 793 NDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNP 852
ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P
Sbjct: 816 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 875
Query: 853 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 912
DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW
Sbjct: 876 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVW 935
Query: 913 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 972
+ DGW Q + LQ P G T + S+T +QFH+DQ FL+VHET LAIYE +L C+KQW
Sbjct: 936 NTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW 995
Query: 973 FPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV 1030
P+ S+ PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S +V
Sbjct: 996 -PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNV 1054
Query: 1031 YPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1073
+P IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1055 HPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1177 bits (3045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/1143 (53%), Positives = 786/1143 (68%), Gaps = 69/1143 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD KA++IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
Q T SP + W S S + AVS A++L P+ A ++D P D
Sbjct: 240 QPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSAD 299
Query: 268 SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
S+ +S+++ P+ I +E V +S +S ++ F++ D PKTV
Sbjct: 300 SEHVSKRTRPMGISDEVNLGVNMLPMS------FSGQAHGHSPAFKAP-----DDLPKTV 348
Query: 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 386
A+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L + FKVWD+ CSM
Sbjct: 349 ARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMP 407
Query: 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
+ ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND
Sbjct: 408 LQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVND 467
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
++FS P KQ+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS +
Sbjct: 468 ISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTA 527
Query: 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566
+DGKIKAWLYD++G+RVDYDAPG CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA
Sbjct: 528 LDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGA 587
Query: 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ VQLLT ID GGL +P
Sbjct: 588 VKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASP 645
Query: 627 RICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPI-----STVTG 680
RI FNK G+LLAV NEN IKI+ + + +S K ++N I + T
Sbjct: 646 RIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATS 705
Query: 681 AGIANGSVS-------NEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSK 730
AG A+ S + N D + DVKP I+ E+ +KS++ K + PS+C+SL LP
Sbjct: 706 AGHADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPEN 765
Query: 731 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 790
++ KISRL + N G AI ALASN +HL+W+W RN+ + +AT +PP+ +QP G
Sbjct: 766 LRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASG-IL 824
Query: 791 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF 850
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF
Sbjct: 825 MTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 884
Query: 851 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 910
+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+
Sbjct: 885 HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944
Query: 911 VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK 970
VW+ DGW Q + L P G APS+T +QFH+DQ FL+VHET LAIYE +L C+K
Sbjct: 945 VWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMK 1004
Query: 971 QWFPISSV-PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1029
QW S+ PI+ ATFSCD ++V+ SF+D T+ + ++NL ++CR+ +AYL + S +
Sbjct: 1005 QWAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN 1064
Query: 1030 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDR 1087
V+P IAAHP +P FAVGL++G V++ EP E W V PP E PT+ S G
Sbjct: 1065 VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGAS 1124
Query: 1088 AMD 1090
A D
Sbjct: 1125 ASD 1127
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/1159 (49%), Positives = 746/1159 (64%), Gaps = 99/1159 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F ++ H LE+ES F+F+M++FED + G+W+DVE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD D AKA++IL K+LK F+ NEELFKE+ LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L + R++E LSKY GD SAR M+ ELK++IEANP+ + KL+FPS+K RLR LINQSL
Sbjct: 121 LTNFRENEQLSKY-GDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239
Query: 225 QTTQSPSSWNFSSSMLTDSA----VSFVALSLSDPTNKAVTM---DRPE----------- 266
Q T +P + + + M S VS + L P N AV+M +RP
Sbjct: 240 QPTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAP-NSAVSMLKRERPRSPPTNSLSMDY 298
Query: 267 ---DSD-ILSEKSPVRI------LNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
DS+ +L P I L VTYPG QS
Sbjct: 299 QTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPG--------------------QSHAH 338
Query: 317 TSFS--DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374
++S D PK V++ L +GS+ SMDFHPVQ T+LLVGTN+GD +W+V S +KL R+
Sbjct: 339 ATYSTDDLPKNVSRILSQGSAI-KSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRS 397
Query: 375 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
FKVWD+ C++ + +L + +VNRVVWSPDG LLGVAYSKHIV +Y+YHGG D R
Sbjct: 398 FKVWDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNH 457
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
LEIDAH GNVNDLAFS P +Q+ V+TCG+DKTIKVWDAVTG++ ++FEGH APVYS+CPH
Sbjct: 458 LEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPH 517
Query: 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
KENI FIFS +VDGKIKAWLYD++G+RVDYDAPG CT MAY A+G RLFSCGTSKEGE
Sbjct: 518 QKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGE 577
Query: 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
SF+VEWNESEGA+KRTY GL + SV VV FDT K++ L AGD+ +K WDM+ V LL+
Sbjct: 578 SFIVEWNESEGAVKRTYLGLGKR--SVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLS 635
Query: 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKL 670
+ A GGLP +P + NK GTLLAV +N IKIL E +S+ G+ S
Sbjct: 636 STAAEGGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPG 695
Query: 671 SV--NPI-------STVTGAGIANGSVS---------NEDPKE--DVKPEISVEAENKSE 710
SV PI ++ TG ++ G S N D + DVKP I+ +AE
Sbjct: 696 SVAKGPIVGTFGTPNSSTGMSLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKT 755
Query: 711 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 770
+ + S+ ++L LP + ++ +L Y N G AI ALA N H +W+W +++ L
Sbjct: 756 WKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLL 815
Query: 771 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM 830
+A + VPP+L+QP G M NDT + N ++ VPCFALSKND+Y+ SASGG ISL+ +M
Sbjct: 816 GKANSNVPPQLWQPSSG-VLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMM 874
Query: 831 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 890
TFKT+ T M P P ATSLAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH KRVTG
Sbjct: 875 TFKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTG 934
Query: 891 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 950
L FS+ LN+LVSSG D+Q+ VW +DGW Q + +Q P G + T +QFH+DQ
Sbjct: 935 LAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHV 994
Query: 951 LLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009
L+VH + LAIYEA +L +KQW P SS ++ A +SCD + ++ +F DG++SI A+ L
Sbjct: 995 LVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTL 1054
Query: 1010 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV- 1068
+++CRI +YL P+ VYP +AAHP +P QFAVGLT+G V+VIEP P W +
Sbjct: 1055 QLKCRIGPNSYL-PSNPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGIS 1113
Query: 1069 LPPDEIVGDQPTSTSEGDR 1087
PP+ G +S D+
Sbjct: 1114 APPENGAGPSVSSAPGSDQ 1132
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1008 bits (2606), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/1122 (46%), Positives = 729/1122 (64%), Gaps = 77/1122 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+ L G+W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M ELK++IEANP+ + KL FPS K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
NWQH C NP+PNPDI TLF+DH C ++ LP PS++
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFLDHSCSPSN---GARALTPVNLPVAAVARPSNFVPLGVHG 236
Query: 234 -NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGV 292
F S+ + +A +++P + S +++ SP + Q + + +P
Sbjct: 237 GPFQSNPAPAPNANALAGWMANPNPSSSV-----PSGVVA-ASPFPMQPSQVNELKHPRA 290
Query: 293 SLKNIPDYSPKSSLKKEMFQ----------------SFGETSFSDFPKTVAQTLIEGSSS 336
++ +S+ +++ + S S D P+ V T+ +GS
Sbjct: 291 PSNSLGLMDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV 350
Query: 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396
+SMDFHP HTLL VG + G+ LW+V S +K+ FK+W++ ACS++F+ ++V++P
Sbjct: 351 -ISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPS 409
Query: 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 456
+SV RV WSPDG+LLGV+++KH++ +YAY GSD RQ LEIDAHVG VNDLAF+ P KQ+
Sbjct: 410 ISVTRVAWSPDGNLLGVSFTKHLIHVYAYQ-GSDLRQHLEIDAHVGCVNDLAFAHPNKQM 468
Query: 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 516
V+TCGDDK IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLY
Sbjct: 469 CVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLY 527
Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
D++G+RVDYDAPG CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G
Sbjct: 528 DNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLG--F 585
Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636
+ S VV FDT +++ LA G+D+ IK W+M+ LLT ++A GGLP PR+ FNK+G L
Sbjct: 586 RKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNL 645
Query: 637 LAV---------IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687
LAV +AN + ++ L E+ S +A+ D K+S + +++ I G
Sbjct: 646 LAVTTADNGFKILANTDGLRTLRAFEARSFEASKASID--MKVSTSAMASSISPAI--GK 701
Query: 688 VSNEDPKEDVKPEI---SVEAENKS----------EVEKPL----FARPSECQSLLLP-S 729
+ + D +P +EA +++ + KPL P++C+ + +P S
Sbjct: 702 IEHMDAGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDS 761
Query: 730 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 789
K +K++RL Y N G + AL SNGV +W+W RN+ + +AT V P+ +QP G
Sbjct: 762 KDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG-L 820
Query: 790 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA 849
M ND + N + +VPC ALSKND+Y+ SA GG +SL+ +MTFK + T MPP P +T LA
Sbjct: 821 LMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLA 879
Query: 850 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 909
F+P DNN+IAIGM+DS+I IYN R EV +KL+GH K +TGL FS ALNILVSSG DAQ+
Sbjct: 880 FHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQL 939
Query: 910 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 969
F W D W + ++Q P G + +T +QFH DQ + L+ HET LAIY+A ++ C+
Sbjct: 940 FFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECI 997
Query: 970 KQWFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL-RPTTS 1026
+W P ++ PI+ A++SC+ ++V+ SF DG +++ +A +L ++CRI +AY+ +PT +
Sbjct: 998 HKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPN 1057
Query: 1027 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV 1068
++P I AHP +P Q AVGL++G V VIEP+E W V
Sbjct: 1058 SAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/1126 (46%), Positives = 710/1126 (63%), Gaps = 70/1126 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F ES H LE+ES F+F+ K+F++ +L G+W+DVE YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD + AKA+ IL +DL+ F+ NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L + R++E LSKY GD +AR M+ ELK++IEANP+ + KL FP+++ RLR LINQSL
Sbjct: 121 LQNFRENEQLSKY-GDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
NWQH C NP+PNPDI TLF DH C L + + P T P+++
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQ---PVTTLTKPAAYPSLGPHV 236
Query: 234 ------------NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILN 281
+S M S S V ++ P M +P++ + IL
Sbjct: 237 PFPPGPAAANAGALASWMAAASGASAVQAAVVTP----ALMPQPQNQ--------MSILK 284
Query: 282 EQASTVTYPGVSLKNIPDYS------PKSSLKKEMFQSFGET---SFSDFPKTVAQTLIE 332
+ PG+ PD+ P S+++ + + + S D P A L +
Sbjct: 285 RPRTPPATPGIVDYQNPDHELMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQ 344
Query: 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392
GS+ SM+F+P+Q+TLLLVG+ G+ LW++ + ++L R FK+WD+ CS F+ +
Sbjct: 345 GSTV-TSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403
Query: 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 452
++ +SV RV WSPDG+ +GVA++KH++QLYA+ G +D RQ EIDAHVG VNDLAF+ P
Sbjct: 404 KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463
Query: 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 512
+Q+ VITCGDDK IKVWD V+G + ++FEGH APVYS+CPH KENI FIFS ++DGKIK
Sbjct: 464 NRQLCVITCGDDKLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522
Query: 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
AWLYD+LG+RVDYDAPG CTRM YSA+G RLFSCGTSK+G+SFLVEWNESEG+IKRTY+
Sbjct: 523 AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582
Query: 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632
+ Q VV FDT+K+ LA G+D IK WDMN + +LT+ DA GGLP P + FNK
Sbjct: 583 --EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNK 640
Query: 633 NGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIA--NGSVS 689
+G LLAV +N KIL P S+ A + + V+ V GA +A N V
Sbjct: 641 DGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVD-FKAVPGAPVASVNCKVE 699
Query: 690 NEDP---------KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV-KANKISRL 739
P + K I + + PS+C LP + K+ +L
Sbjct: 700 RGSPVRHSQMLNGVDPSKSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQL 759
Query: 740 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 799
Y N G I AL SNG+ +W+W N+ S +AT V P+ +QP G M ND + N
Sbjct: 760 LYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSG-LLMTNDVSGVN 818
Query: 800 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 859
+ A PC ALSKND+Y+ SA+GG +SL+ +MTFK + T MPP P +T LAF+P DNNVIA
Sbjct: 819 LENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIA 878
Query: 860 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 919
IGM+DSTI IYN R EV SKL+GH KR+TGL FS ALNILVSSG DAQI W +D W
Sbjct: 879 IGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEK 938
Query: 920 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV- 978
+ ++Q P G A +T +QFH DQ R L+VHET LA+++A ++ C++QW P S+
Sbjct: 939 RKSVAIQMPAG--KAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLS 996
Query: 979 -PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1037
PIS A ++C+ ++++T+F DG + + +A +L ++CRI +AYL L P +AA
Sbjct: 997 APISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQGNQGLS--PLVVAA 1054
Query: 1038 HPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTS 1083
HP P QFAVGL +G V ++EP E W ++PP E + + P++TS
Sbjct: 1055 HPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAI-NSPSTTS 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 146/331 (44%), Gaps = 44/331 (13%)
Query: 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI--GA 382
T QTL SS +S+ F P V + GD + K+WD G
Sbjct: 958 TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000
Query: 383 CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG 442
C T + G SV V +SPDG + ++++ G+ Q LE H G
Sbjct: 1001 C-----TQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGT-CTQTLE--GHGG 1052
Query: 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIH 500
V + FS ++++ + DD TIK+WDAV+G+ T + EGHG V+S+ P +
Sbjct: 1053 WVQSVVFSPDGQRVA--SGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR--- 1107
Query: 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
+ S S+DG IK W S + G +A+S +G+R+ S + + W
Sbjct: 1108 -VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRV----ASGSIDGTIKIW 1162
Query: 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620
+ + G +T +G V V F ++ + D IKIWD T++ G
Sbjct: 1163 DAASGTCTQTLEG---HGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHG 1219
Query: 621 GLPENPRICFNKNGTLLAVIANENRIKILET 651
G ++ + F+ +G +A +++N IKI +T
Sbjct: 1220 GWVQS--VAFSPDGQRVASGSSDNTIKIWDT 1248
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 115/537 (21%), Positives = 218/537 (40%), Gaps = 69/537 (12%)
Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 458
VN V +S DG +L V+L+ G + H V + FS + +
Sbjct: 909 VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKT---FKGHTSRVRSVVFSP--NSLML 963
Query: 459 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
+ D+T+++WD +G Y F+GH VYS+ + ++ + + S D ++ W D
Sbjct: 964 ASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW--DI 1019
Query: 519 LGARVDYDAPG-LGCTR-MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
++ Y G C R + +S++G L S + + W+ S G T QG
Sbjct: 1020 SSSQCFYIFQGHTSCVRSVVFSSDGAML----ASGSDDQTVRLWDISSGNCLYTLQG--- 1072
Query: 577 QHNS-VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNG 634
H S V V F + + GDD ++++WD++ L T+ G R + F+ NG
Sbjct: 1073 -HTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQ---GYTSWVRFLVFSPNG 1128
Query: 635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPK 694
LA +++ +++ + + ++ + ++ +P GA +A+GS
Sbjct: 1129 VTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSP----DGATLASGSGDQTVRL 1184
Query: 695 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 754
D+ S+C +L N + +N G + + +S+
Sbjct: 1185 WDIS--------------------SSKCLYILQGHTSWVNSV---VFNPDGSTLASGSSD 1221
Query: 755 GVHLMWRWPRNDLTLSTEA-TTKVPPRLYQP-----RHGPQFMVNDTTDSNSQEAVPCF- 807
+W + + + T+ V ++ P G D +S + + F
Sbjct: 1222 QTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQ 1281
Query: 808 ---------ALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 857
A + + + L S SG + L+ + + K + T + +S+ F+P D +
Sbjct: 1282 GHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSP-DGTM 1340
Query: 858 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 914
+A G DD T+ +++ S E + GH+ V ++FS IL S GD + +W +
Sbjct: 1341 LASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSI 1397
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 121/544 (22%), Positives = 224/544 (41%), Gaps = 34/544 (6%)
Query: 374 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
+ +VW++ + +L + R V VV+SPDG +L + V+L++ G +
Sbjct: 665 HVRVWEVKSGKLLL---ICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIK- 720
Query: 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
+ H V +AF + ++ + DKTIK+WD G+ + GH V C
Sbjct: 721 --TLTGHEHEVFSVAFHPDGETLA--SASGDKTIKLWDIQDGTCLQTLTGHTDWVR--CV 774
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-MAYSANGRRLFSCGTSKE 552
+ + + S + D IK W S G + G R +A+SA+G+ L S
Sbjct: 775 AFSPDGNTLASSAADHTIKLWDV-SQGKCLRTLKSHTGWVRSVAFSADGQTL----ASGS 829
Query: 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612
G+ + WN G +TY G NSV + + +++ D IK+WD
Sbjct: 830 GDRTIKIWNYHTGECLKTYIG---HTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHIC 886
Query: 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672
+ T+ G E + F+ +G LA ++ + +++ + A +D ++
Sbjct: 887 IKTLH--GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAF 944
Query: 673 NPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 732
+P + +G + +V D + IS + + F+ S Q+L S
Sbjct: 945 SPDRQILASGSNDKTVKLWDWQ--TGKYISSLEGHTDFIYGIAFSPDS--QTLASASTDS 1000
Query: 733 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV 792
+ ++ ++ Q I ++ V+ + P+ + + A V +L+ G
Sbjct: 1001 SVRLWNISTGQCFQ-ILLEHTDWVYAVVFHPQGKIIATGSADCTV--KLWNISTGQCL-- 1055
Query: 793 NDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAFN 851
T S + + A S + L SAS + L+ T + + + S S F+
Sbjct: 1056 --KTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFS 1113
Query: 852 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 911
P + +IA D T+ I++ + + + L GH+ V + FS IL S+ D + +
Sbjct: 1114 P-NGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRI 1172
Query: 912 WDVD 915
WDV+
Sbjct: 1173 WDVN 1176
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 22/275 (8%)
Query: 375 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
VWD+ + L D V V +SPDG+LL V+L+ + A ++
Sbjct: 483 IHVWDVASGDELHTLEGHTD---WVRAVAFSPDGALLASGSDDATVRLWDV---AAAEER 536
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
+ H V D+AFS S++ G D T ++W+ TG+ +GH VY++
Sbjct: 537 AVFEGHTHYVLDIAFS---PDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVA- 592
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
+ + S S DG I+ W + R AP +A+S +G L
Sbjct: 593 -FSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHG-----S 646
Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
+S + W+ + G T++G + V V F + + DD I++WD+ +
Sbjct: 647 DSTVHLWDVASGEALHTFEG---HTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEH 703
Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
TT++ G P + + F+ GT LA + + I+I
Sbjct: 704 TTLE-GHTEPVH-SVAFHPEGTTLASASEDGTIRI 736
|
May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 142/629 (22%), Positives = 253/629 (40%), Gaps = 127/629 (20%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+V V +SPDG + S ++L+ G+ + I H VN++ FS K ++
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDGKNLA 1171
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAW- 514
+ D +IK+WD +G + GH A V ++ P + I + S D +K W
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQT----IAAGSEDKTVKLWH 1225
Query: 515 -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569
L +L D+ +++S +G+ L S K + W ++G + +
Sbjct: 1226 RQDGKLLKTLNGHQDW------VNSLSFSPDGKTLASASADKT----IKLWRIADGKLVK 1275
Query: 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629
T +G ++SV V+F + I +A D+ IK+W+ + ++L T GG+ +
Sbjct: 1276 TLKG---HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VN 1329
Query: 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI---STVTGAGIANG 686
F + ++A + +N I++ + P + ++ VL+ N +V+ + S + AG A+G
Sbjct: 1330 FLPDSNIIASASLDNTIRLWQRPLISPLE---VLAGNSGVYAVSFLHDGSIIATAG-ADG 1385
Query: 687 SVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL--LPSKVKANKISRLTYNNG 744
++ S+ SLL LP G
Sbjct: 1386 NIQ---------------------------LWHSQDGSLLKTLP---------------G 1403
Query: 745 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 804
+AI+ ++ P+ DL S A V ++++ R G D+ V
Sbjct: 1404 NKAIYGISFT--------PQGDLIASANADKTV--KIWRVRDGKALKTLIGHDNE----V 1449
Query: 805 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 863
S + L SAS + L+ V K T+ + ++F+P D +IA
Sbjct: 1450 NKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSP-DGKIIASASA 1508
Query: 864 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV-DGWGIQT- 921
D TI ++++ S +I L H+ V + F+ ++L S+ D + +W DG + T
Sbjct: 1509 DKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHTF 1568
Query: 922 -------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP 974
S +PDG + SE D+T + + HL LT L P
Sbjct: 1569 SGHSNVVYSSSFSPDGRYIASASE-------DKTVKIWQIDGHL-------LTTL----P 1610
Query: 975 ISSVPISQATFSCDCRMVFTSFVDGTLSI 1003
+ A FS D + + + +D T I
Sbjct: 1611 QHQAGVMSAIFSPDGKTLISGSLDTTTKI 1639
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1091 | ||||||
| 224141931 | 1109 | predicted protein [Populus trichocarpa] | 0.975 | 0.959 | 0.585 | 0.0 | |
| 356550630 | 1132 | PREDICTED: topless-related protein 1-lik | 0.956 | 0.921 | 0.555 | 0.0 | |
| 357455301 | 1134 | WD repeat-containing protein, putative [ | 0.956 | 0.920 | 0.551 | 0.0 | |
| 357455305 | 1149 | WD repeat-containing protein, putative [ | 0.956 | 0.908 | 0.551 | 0.0 | |
| 357455303 | 1112 | WD repeat-containing protein, putative [ | 0.956 | 0.938 | 0.557 | 0.0 | |
| 356526242 | 1133 | PREDICTED: protein TOPLESS-like [Glycine | 0.959 | 0.924 | 0.553 | 0.0 | |
| 356554802 | 1136 | PREDICTED: topless-related protein 1-lik | 0.967 | 0.928 | 0.549 | 0.0 | |
| 357458875 | 1138 | WD repeat-containing protein, putative [ | 0.960 | 0.920 | 0.552 | 0.0 | |
| 297839887 | 1120 | hypothetical protein ARALYDRAFT_895943 [ | 0.953 | 0.928 | 0.548 | 0.0 | |
| 24461849 | 1127 | CTV.2 [Citrus trifoliata] | 0.955 | 0.924 | 0.553 | 0.0 |
| >gi|224141931|ref|XP_002324314.1| predicted protein [Populus trichocarpa] gi|222865748|gb|EEF02879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1219 bits (3153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/1103 (58%), Positives = 784/1103 (71%), Gaps = 39/1103 (3%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
M+ L KDLV LI QFL+EEGF E+A MLERES +YF MKFFEDMI G W++ E+YLS F
Sbjct: 1 MAALCKDLVLLISQFLDEEGFKETARMLERESGYYFSMKFFEDMIRSGNWDEAERYLSCF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TK+DDNRYSTKIYFEIRKQ F E LD + +KAL+IL KDLK FAP NEEL KE+ LLT
Sbjct: 61 TKLDDNRYSTKIYFEIRKQKFLEVLDNDERSKALDILMKDLKAFAPDNEELLKEMTLLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++IRDHE LS Y DA SARK MM+ELK++IEANP+L+ KL+FP+I RLRRLINQSL
Sbjct: 121 LNNIRDHESLS-MYSDAESARKVMMVELKKVIEANPLLRDKLEFPNIANHRLRRLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQETD---FSGQSSESNALPPQTTQ----SPSSW 233
NWQH+HCA PQPNPDI TLFVDH+C +D FS +S+SN LP QTT + S+
Sbjct: 180 NWQHMHCAYPQPNPDIRTLFVDHICVPIPSDDHLFSA-ASDSNPLPSQTTSMLVSTSSAS 238
Query: 234 NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILS-------EKSPVRILNEQAST 286
N +SS S++S ALSL PTN + E +LS + + +L E +T
Sbjct: 239 NSTSSSEAHSSISSEALSLGVPTNIGSFIVVIEKKLLLSLTIYSMFVAAMIEVL-EDNTT 297
Query: 287 VTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS-----DFPKTVAQTLIEGSSSPMSMD 341
V G+ I + S+ +F F S D PK V + L EGSS P SMD
Sbjct: 298 VNDSGIPKNRIVNLKRPSNEASLIFHFFLLKHCSVNISDDLPKNVFRILNEGSS-PTSMD 356
Query: 342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401
FHP + T+LLVGT VGD GLW+V+SG+ L RNFKVWDI ACSM+FK L++DP VSVNR
Sbjct: 357 FHPEKQTVLLVGTTVGDIGLWEVSSGESLLSRNFKVWDIAACSMMFKATLLKDPSVSVNR 416
Query: 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461
V WSP+G L GVAYSKH+VQ+Y+Y+ DARQQLEIDAHVG VNDL FSAP KQ+ VITC
Sbjct: 417 VAWSPEGGLFGVAYSKHLVQIYSYNEAKDARQQLEIDAHVGGVNDLTFSAPEKQLLVITC 476
Query: 462 GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 521
GDDK +K WDA G + Y+FEGH APVYSLCP++K N+HF+F+ SV+G IK WLYD+LGA
Sbjct: 477 GDDKIVKAWDATDGVKMYTFEGHDAPVYSLCPYSKGNVHFVFATSVNGNIKVWLYDNLGA 536
Query: 522 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 581
RVDYDAPGLGCT MAYS + RRLFSCGTS GESFLVEW++SEGAIKRTY G LQ NS
Sbjct: 537 RVDYDAPGLGCTSMAYSGD-RRLFSCGTSGSGESFLVEWDDSEGAIKRTYLG--LQKNSS 593
Query: 582 SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641
SVV FD K+Q+LAAGD+HVIKIWDMNK++L TTIDA GGLP NP + FNK GTLLAV A
Sbjct: 594 SVVQFDIMKNQVLAAGDEHVIKIWDMNKIELFTTIDAEGGLPANPCVRFNKEGTLLAVSA 653
Query: 642 NENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNE-------D 692
N+N+IKIL S + L D+ R +S IS A A+ +V+ +
Sbjct: 654 NDNKIKILAKDGSLQSLHTTENCLDDDFRLVS-EAISKGACAQDADEAVAKQCFNLLQNG 712
Query: 693 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 752
+ VK +I+ + PS+CQ L LPS +KANKISRL YNN G +I AL
Sbjct: 713 NLKAVKSKITGKDTKSKSGRLIELNSPSQCQILRLPSHMKANKISRLIYNNAGNSILALT 772
Query: 753 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812
SN HL W+WP+ND LS A KV P+L+QPR M ND T SN +E VPCFALS+N
Sbjct: 773 SNATHLYWKWPQNDFDLSDTAAAKVSPQLWQPRSYSGLMTNDLTGSNPEETVPCFALSRN 832
Query: 813 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 872
D+YL S+SGG ISLY ++ FKT+L+IM P P AT +AF+P DNN++AIG D+STILIYN
Sbjct: 833 DSYLMSSSGGRISLYNLLKFKTMLSIMQPPPAATCIAFHPQDNNILAIGRDNSTILIYNV 892
Query: 873 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 932
RS++VI+ LEGHSKRV+GL FS+ LN+LVSSG DAQIFVW+V+GW Q LQ PDG +
Sbjct: 893 RSAKVITILEGHSKRVSGLAFSNDLNLLVSSGADAQIFVWNVEGWYKQRSTFLQIPDGRI 952
Query: 933 TLAPS-ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCR 990
+ S +THIQFH++QT FL VHETHLAIYEA +L C+KQW P + PIS ATFSCD +
Sbjct: 953 PFSLSTDTHIQFHQNQTEFLSVHETHLAIYEARKLECVKQWIPGDFATPISHATFSCDGQ 1012
Query: 991 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1050
MV+ SF+DG +SI +AS+ ++ C+I TAYL PT+S L VYP AIAAHP +P QFAVGLT
Sbjct: 1013 MVYASFLDGLVSIFDASDFQLYCQINPTAYLFPTSS-LGVYPIAIAAHPQEPNQFAVGLT 1071
Query: 1051 NGEVYVIEPNEPGDTWAVLPPDE 1073
+G V V EP W++L DE
Sbjct: 1072 DGGVIVFEPPISAGKWSMLTADE 1094
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1218 bits (3151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 634/1141 (55%), Positives = 786/1141 (68%), Gaps = 98/1141 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
Q T +P + W + + + AVS A+ L P+ A ++D P D
Sbjct: 240 QPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGD 299
Query: 268 SDILSEKS-PVRILNE-----QASTVTYPGVSLK---NIPDYSPKSSLKKEMFQSFGETS 318
SD +S+++ P+ + +E + T+PG N PD
Sbjct: 300 SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHGQAFNAPD------------------- 340
Query: 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW 378
D PKT ++L +GSS PMSMDFHPVQ TLLLVGTNVGD LW+V S ++L +RNFKVW
Sbjct: 341 --DLPKTAMRSLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVW 397
Query: 379 DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID 438
D+ ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG D Q LEID
Sbjct: 398 DLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEID 457
Query: 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 498
AHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KEN
Sbjct: 458 AHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKEN 517
Query: 499 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558
I FIFS ++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSKEGES +V
Sbjct: 518 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIV 577
Query: 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618
EWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+DA
Sbjct: 578 EWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDA 635
Query: 619 GGGLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKL 670
GGLP +PRI FNK+G LLAV ANEN IKIL + NS+ S+ + K
Sbjct: 636 DGGLPASPRIRFNKDGALLAVSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKP 695
Query: 671 SVNPI----------------STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEK- 713
++NPI S+V NG N DVKP IS E+ +KS++ K
Sbjct: 696 TINPISAAAAAATSAALAERASSVVAITAMNGDARNLG---DVKPRISEESNDKSKIWKL 752
Query: 714 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 773
PS+C+SL LP V+ NKISRL Y N G AI ALASN +HL+W+W RND + +A
Sbjct: 753 TEINEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKA 812
Query: 774 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 833
T V P+L+QP G M ND TD+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFK
Sbjct: 813 TASVQPQLWQPSSG-ILMTNDITDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK 871
Query: 834 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 893
T+ T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL F
Sbjct: 872 TMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAF 931
Query: 894 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 953
S LN+LVSSG DAQI VW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+V
Sbjct: 932 SHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVV 991
Query: 954 HETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1012
HET LAIYEA +L CLKQWFP SS PIS ATFSCD ++++ SF+D T+ + SNL ++
Sbjct: 992 HETQLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLR 1051
Query: 1013 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1072
CRI +AYL + S +V P IAAHP +P QFAVGL++G V+V EP+E W V PP
Sbjct: 1052 CRINPSAYLSASVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPI 1110
Query: 1073 E 1073
E
Sbjct: 1111 E 1111
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455301|ref|XP_003597931.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486979|gb|AES68182.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1202 bits (3111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/1142 (55%), Positives = 780/1142 (68%), Gaps = 98/1142 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239
Query: 225 QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
Q T +P + M + V+ ++S + PTN +V D
Sbjct: 240 QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 297
Query: 264 RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
P DSD +S+++ P+ + +E + T+PG Q+F
Sbjct: 298 YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 339
Query: 317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376
S D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 340 NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 398
Query: 377 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436
VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 399 VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 458
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 459 IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 518
Query: 497 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556
ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES
Sbjct: 519 ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 578
Query: 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616
+VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+
Sbjct: 579 IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 636
Query: 617 DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 667
DA GGLP +PRI FNK G+LLAV ANEN IKI L + E++S DA+ S+ +
Sbjct: 637 DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 695
Query: 668 RKLSVNPI--------------STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEK 713
K +NP+ S+V NG V N D+KP IS E+ +KS++ K
Sbjct: 696 TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLG---DIKPRISEESNDKSKIWK 752
Query: 714 -PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 772
PS C+SL LP + KISRL Y N G AI ALASN +HL+W+W RND S +
Sbjct: 753 LTEINEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGK 812
Query: 773 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF 832
AT VPP+L+QP G M ND D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTF
Sbjct: 813 ATASVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTF 871
Query: 833 KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 892
KT+ T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL
Sbjct: 872 KTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLA 931
Query: 893 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952
FS LN+LVSSG D QIFVW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+
Sbjct: 932 FSHVLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLV 991
Query: 953 VHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1011
VHET LAIYEA +L CLKQWFP ++ PIS ATFSCD ++F SF+D T+ + ASNL +
Sbjct: 992 VHETQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRL 1051
Query: 1012 QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1071
+CRI +AYL S ++ P IAAHP +P QFAVGL++G V+V EP E W V PP
Sbjct: 1052 RCRINPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPP 1111
Query: 1072 DE 1073
E
Sbjct: 1112 IE 1113
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455305|ref|XP_003597933.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486981|gb|AES68184.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1202 bits (3110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/1142 (55%), Positives = 780/1142 (68%), Gaps = 98/1142 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 16 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 75
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 76 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 135
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 136 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 194
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 195 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 254
Query: 225 QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
Q T +P + M + V+ ++S + PTN +V D
Sbjct: 255 QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 312
Query: 264 RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
P DSD +S+++ P+ + +E + T+PG Q+F
Sbjct: 313 YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 354
Query: 317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376
S D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 355 NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 413
Query: 377 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436
VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 414 VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 473
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 474 IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 533
Query: 497 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556
ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES
Sbjct: 534 ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 593
Query: 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616
+VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+
Sbjct: 594 IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 651
Query: 617 DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 667
DA GGLP +PRI FNK G+LLAV ANEN IKI L + E++S DA+ S+ +
Sbjct: 652 DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 710
Query: 668 RKLSVNPI--------------STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEK 713
K +NP+ S+V NG V N D+KP IS E+ +KS++ K
Sbjct: 711 TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLG---DIKPRISEESNDKSKIWK 767
Query: 714 -PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 772
PS C+SL LP + KISRL Y N G AI ALASN +HL+W+W RND S +
Sbjct: 768 LTEINEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGK 827
Query: 773 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF 832
AT VPP+L+QP G M ND D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTF
Sbjct: 828 ATASVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTF 886
Query: 833 KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 892
KT+ T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL
Sbjct: 887 KTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLA 946
Query: 893 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952
FS LN+LVSSG D QIFVW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+
Sbjct: 947 FSHVLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLV 1006
Query: 953 VHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1011
VHET LAIYEA +L CLKQWFP ++ PIS ATFSCD ++F SF+D T+ + ASNL +
Sbjct: 1007 VHETQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRL 1066
Query: 1012 QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1071
+CRI +AYL S ++ P IAAHP +P QFAVGL++G V+V EP E W V PP
Sbjct: 1067 RCRINPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPP 1126
Query: 1072 DE 1073
E
Sbjct: 1127 IE 1128
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455303|ref|XP_003597932.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486980|gb|AES68183.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1202 bits (3110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/1120 (55%), Positives = 773/1120 (69%), Gaps = 76/1120 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239
Query: 225 QTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKS-PVRILNE- 282
Q T +P + M + V+ S+S + + P D +S+++ P+ + +E
Sbjct: 240 QPTPAPVPMPLAGWMSNPTPVAHP--SVSGGGAIGLGVGGPSMPDHISKRTRPIGMSDEG 297
Query: 283 ----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPM 338
+ T+PG Q+F S D PKTV +TL +G SSPM
Sbjct: 298 NLPVNVLSATFPG----------------HGHGQAF--NSPDDLPKTVLRTLNQG-SSPM 338
Query: 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398
SMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFKVWD+ ACSM F+ ALV+DP VS
Sbjct: 339 SMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVS 398
Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 458
VNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ V
Sbjct: 399 VNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCV 458
Query: 459 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
ITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+
Sbjct: 459 ITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDN 518
Query: 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG + +
Sbjct: 519 LGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR- 577
Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+DA GGLP +PRI FNK G+LLA
Sbjct: 578 -SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGSLLA 636
Query: 639 VIANENRIKI---------LETPESNSVDAAGVLSDNLRKLSVNPI-------------- 675
V ANEN IKI L + E++S DA+ S+ + K +NP+
Sbjct: 637 VSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAMTKPIINPMSVATAATSAALERA 695
Query: 676 STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKAN 734
S+V NG V N D+KP IS E+ +KS++ K PS C+SL LP +
Sbjct: 696 SSVAAITGMNGDVRNLG---DIKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENARVT 752
Query: 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 794
KISRL Y N G AI ALASN +HL+W+W RND S +AT VPP+L+QP G M ND
Sbjct: 753 KISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATASVPPQLWQPSSG-ILMTND 811
Query: 795 TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 854
D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P D
Sbjct: 812 INDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQD 871
Query: 855 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 914
NN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS LN+LVSSG D QIFVW+
Sbjct: 872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADGQIFVWNT 931
Query: 915 DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP 974
DGW Q R LQ P G A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP
Sbjct: 932 DGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFP 991
Query: 975 I-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1033
++ PIS ATFSCD ++F SF+D T+ + ASNL ++CRI +AYL S ++ P
Sbjct: 992 RDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCRINPSAYLSANVSSSNIQPL 1051
Query: 1034 AIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1073
IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1052 VIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1091
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/1139 (55%), Positives = 785/1139 (68%), Gaps = 92/1139 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
Q T +P + W + + + +AVS A+ L P+ A ++D P
Sbjct: 240 QPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSG 299
Query: 267 DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS 320
DSD +++++ P+ I +E + T+PG + Q+F
Sbjct: 300 DSDHVAKRTRPMGISDEVNLPVNVLSATFPG---------------HGQHSQAFNAPD-- 342
Query: 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 380
D PKTV +TL +GSS PMSMDFHP+Q +LLLVGT+VGD LW+V S ++L RNFKVWD+
Sbjct: 343 DIPKTVVRTLNQGSS-PMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDL 401
Query: 381 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 440
ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAH
Sbjct: 402 SACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAH 461
Query: 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 500
VG VNDLAFS P KQ+ VITCGDDKTIKVWDA +G++ Y+FEGH APVYS+CPH KENI
Sbjct: 462 VGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQ 521
Query: 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
FIFS ++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+GES +VEW
Sbjct: 522 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEW 581
Query: 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620
NESEGA+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ VQLLTT+DA G
Sbjct: 582 NESEGAVKRTYQG--FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADG 639
Query: 621 GLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSV 672
GLP +PRI FNK+GTLLAV ANEN IKIL + NS+ A S+ L K ++
Sbjct: 640 GLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTI 699
Query: 673 NPI----------------STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEK-PL 715
NPI S+V NG N DVKP IS E+ +KS++ K
Sbjct: 700 NPISAAAAAATSAALAERASSVVAIAGMNGDTRNLG---DVKPRISEESNDKSKIWKLTE 756
Query: 716 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 775
S+C+SL LP V+ KISRL Y N G AI ALASN +HL+W+W RN+ S +AT
Sbjct: 757 INEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATA 816
Query: 776 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 835
+ P+L+QP G M ND DSN ++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 817 TLQPQLWQPSSG-ILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 875
Query: 836 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 895
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 876 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 935
Query: 896 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 955
LN+LVSSG DAQI VW+ DGW Q R LQ P G A S+T +QFH+DQ +FL+VHE
Sbjct: 936 VLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHE 995
Query: 956 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1014
T LAIYEA +L LKQWFP SS PIS ATFSCD ++VF SF+D T+ + ASNL ++CR
Sbjct: 996 TQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLRCR 1055
Query: 1015 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1073
I ++YL P + ++ P IAAHP +P QFA+GL++G V+V EP E W V PP E
Sbjct: 1056 INPSSYL-PASVSSNIQPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPIE 1113
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1196 bits (3093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/1133 (54%), Positives = 773/1133 (68%), Gaps = 78/1133 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FE+ KQ + EALD HD +KA+ IL KDLK FA N+ELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY D SAR M++ELK++IEANP+ KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKYC-DTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC-QLQETD--------FSGQSSESNALPPQTTQSP- 230
NWQH C NP+PNPDI TLFVDH C QL G ++ PP P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPF 239
Query: 231 -----------SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
+ W + + + VS A+ L P+ A ++D P D
Sbjct: 240 QPSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAALKHPRTPPTYPSVDYPSGD 299
Query: 268 SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
SD +S+++ P+ + +E V + P Q+F D PKT
Sbjct: 300 SDHVSKRTRPMGMSDEVNLPVNVLSATF-------PGHGHGHGHGQAFNAP--DDLPKTA 350
Query: 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 386
+TL +G SSPMSMDFHPVQ TLLLVGTNVGD LW+V S ++L +RNFKVWD+ ACSM
Sbjct: 351 MRTLNQG-SSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMP 409
Query: 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
F+ ALV+DPGVSV RV+WSPDG+L GVAYS+HIVQ+Y+YH G D +Q LEIDAHVG VND
Sbjct: 410 FQAALVKDPGVSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVND 469
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
LAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KENI FIFS +
Sbjct: 470 LAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTA 529
Query: 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566
+DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+ ES +VEWNESEGA
Sbjct: 530 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGA 589
Query: 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
+KRTYQG + S+ V FDT K++ LAAGDD IK WDM+ +QLLTT+DA GGLP +P
Sbjct: 590 VKRTYQG--FRKRSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSP 647
Query: 627 RICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPIS-- 676
RI FNK+G LLAV A EN IKIL + NS+ S+ + K ++NPIS
Sbjct: 648 RIRFNKDGALLAVSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAA 707
Query: 677 --------------TVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEK-PLFARPSE 721
+V G NG N DVKP IS E+ +KS++ K PS+
Sbjct: 708 AAAATSAALGERALSVVGINAMNGDARNLG---DVKPRISEESNDKSKIWKLTEINEPSQ 764
Query: 722 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 781
C+SL LP V+ NKISRL Y N G AI ALASN +HL+W+W RND + +A+ V P+L
Sbjct: 765 CRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQL 824
Query: 782 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 841
+QP G M ND TDSN+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP
Sbjct: 825 WQPSSG-ILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPP 883
Query: 842 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 901
P A LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS LN+LV
Sbjct: 884 PPAANFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLV 943
Query: 902 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 961
SSG DAQI VW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHET LAIY
Sbjct: 944 SSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIY 1003
Query: 962 EAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1020
EA +L CLKQWFP SS PIS ATFSCD ++++ SF+D T+ + SNL +QCRI +AY
Sbjct: 1004 EATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAY 1063
Query: 1021 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1073
L + S +V P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1064 LSASVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIE 1115
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1193 bits (3087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/1140 (55%), Positives = 784/1140 (68%), Gaps = 92/1140 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPPQTTQSP- 230
NWQH C NP+PNPDI TLFVDH C + G ++ PP P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPF 239
Query: 231 -----------SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
+ W + + + +AVS A+ L P+ ++D P
Sbjct: 240 QPNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGALKHPRTPPINPSVDYPSG 299
Query: 267 DSDILSEKS-PVRILNEQASTV-----TYPGVSLK---NIPDYSPKSSLKKEMFQSFGET 317
DSD +++++ P+ I +E V T+PG N PD P
Sbjct: 300 DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHSQAFNAPDDLP--------------- 344
Query: 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKV 377
PKTV +TL +GSS PMSMDFHPVQ +LLLVGTNVG LW+V S +KL RNFKV
Sbjct: 345 ----LPKTVTRTLNQGSS-PMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKV 399
Query: 378 WDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI 437
WD+ ACSM F+ ALV+DP VSVNRV+WSPDG+L GVAYS+HIVQ+Y+YH G D RQ LEI
Sbjct: 400 WDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEI 459
Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497
DAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDAV+G++ Y+FEGH APVYS+CPH KE
Sbjct: 460 DAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKE 519
Query: 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557
NI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES +
Sbjct: 520 NIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSI 579
Query: 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+D
Sbjct: 580 VEWNESEGAVKRTYQGFRKR--SMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVD 637
Query: 618 AGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNLR 668
A GGLP +PRI FNK+GTLLAV AN+N IKI L T E+NS+ A S+ +
Sbjct: 638 ADGGLPASPRIRFNKDGTLLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASE-MA 696
Query: 669 KLSVNPISTVT----------GAGIANGSVSNEDPKE--DVKPEISVEAENKSEVEK-PL 715
K ++N +S+ + +A + N D + DVKP IS EA +KS++ K
Sbjct: 697 KPTINSMSSAAAATSAALAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTE 756
Query: 716 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 775
PS C+SL LP V+ NKISRL Y N G AI ALASN +HL+W+WPRN+ S +A
Sbjct: 757 INEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANA 816
Query: 776 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 835
VP +L+QP G M ND DSN +++VPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 817 SVPAQLWQPSSG-ILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 875
Query: 836 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 895
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 876 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 935
Query: 896 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 955
LN+LVSSG DAQI VW+ DGW Q R LQ P G A S+T +QFH+DQ +FL+VHE
Sbjct: 936 VLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHE 995
Query: 956 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1014
T LAI+EA +L CLKQW P SS PIS ATFSCD ++++ SF+D T+ + ASNL ++CR
Sbjct: 996 TQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCR 1055
Query: 1015 ILSTAYLRPTTSC-LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1073
I AYL + S +V P IAAHP + QFAVGL++G V+V EP E W V PP+E
Sbjct: 1056 INPPAYLPASVSSNSNVQPLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNE 1115
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839887|ref|XP_002887825.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] gi|297333666|gb|EFH64084.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1191 bits (3080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/1130 (54%), Positives = 782/1130 (69%), Gaps = 90/1130 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD KA+ IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C+L G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSL-------------SDPTNKAVTMDRPE 266
Q T SP + W S S + AVS A++L + PTN AV D P
Sbjct: 240 QPTPSPVPTPLAGWMSSPSSVPHPAVSGGAIALGAPSIQAALKHPRTPPTNSAV--DYPS 297
Query: 267 -DSDILSEKS-PVRILNEQASTV-----TYPGVSLKN-----IPDYSPKSSLKKEMFQSF 314
DSD +S+++ P+ I +E + V T+PG + + +PD
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKVPD--------------- 342
Query: 315 GETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374
D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L +
Sbjct: 343 ------DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKT 395
Query: 375 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
FKVWD+ CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct: 396 FKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQH 455
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + ++FEGH APVYS+CPH
Sbjct: 456 LEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRHTFEGHEAPVYSICPH 515
Query: 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
KENI FIFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+GE
Sbjct: 516 YKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGE 575
Query: 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
SF+VEWNESEGA+KRTYQG S+ VV FDT K++ LAAGDD IK WDM+ +QLLT
Sbjct: 576 SFIVEWNESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLT 633
Query: 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673
IDA GGL +PRI FNK G+LLAV AN+N IK++ + + LS K ++N
Sbjct: 634 AIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAIN 693
Query: 674 -------PISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEK-PLFARPSECQSL 725
P S V+ G+ NG N DVKP I+ E+ +KS+V K PS+C+SL
Sbjct: 694 SIPVAERPASVVSIPGM-NGDSRN---MVDVKPVITEESNDKSKVWKLTELGEPSQCRSL 749
Query: 726 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 785
LP ++A KISRL + N G AI ALASN +HL+W+W RND + +AT VPP+ +QP
Sbjct: 750 RLPENMRATKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASVPPQQWQPA 809
Query: 786 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTA 845
G M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P A
Sbjct: 810 SG-ILMTNDVVETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAA 868
Query: 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 905
T LAF+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG
Sbjct: 869 TFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGA 928
Query: 906 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 965
DAQ+ VW+ DGW Q + LQ P G T A S+T +QFH+DQ FL+VHET LAIYE +
Sbjct: 929 DAQLCVWNTDGWEKQKSKVLQIPQGRSTSALSDTRVQFHQDQVHFLVVHETQLAIYETTK 988
Query: 966 LTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1023
L C+KQW P+ SS PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL
Sbjct: 989 LECMKQW-PVRESSAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPA 1047
Query: 1024 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1073
+ S +V+P IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1048 SLSNSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 1190 bits (3079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/1131 (55%), Positives = 783/1131 (69%), Gaps = 89/1131 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W+DVE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD AKA+ IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K N SL
Sbjct: 121 LENFRENEQLSKY-GDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSL 171
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 172 NWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPF 231
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPE------------- 266
Q T +P + W + +T AVS A+ L P+ A + P
Sbjct: 232 QPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291
Query: 267 DSDILSEKS-PVRILNEQASTVTYPGVSLKNIP-DYSPKSSLKKEMFQSFGETSFSDFPK 324
DSD LS+++ P+ I +E N+P + P S Q+F ++ D PK
Sbjct: 292 DSDHLSKRTRPIGISDE------------INLPVNVLPVSFTGHSHSQAF--SAPEDLPK 337
Query: 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS 384
TV +TL +GSS PMSMDFHPVQ TLLLVGTNVGD GLW+V S ++L +RNFKVWD+GACS
Sbjct: 338 TVTRTLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 396
Query: 385 MLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV 444
M + ALV+DPGVSVNRV+WSPDGSL GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG V
Sbjct: 397 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 456
Query: 445 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS 504
ND+AFS P KQ+ VITCGDDKTIKVWDA G++ Y FEGH APVYS+CPH KENI FIFS
Sbjct: 457 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS 516
Query: 505 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564
++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+GESF+VEWNESE
Sbjct: 517 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESE 576
Query: 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624
GA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ VQLLT+IDA GGLP
Sbjct: 577 GAVKRTYQGFRKR--SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA 634
Query: 625 NPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPIS 676
+PRI FNK+G LLAV N+N IKIL T + N A S+N K +++PIS
Sbjct: 635 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPIS 693
Query: 677 -----TVTGAGIANGSVS-------NEDPKE--DVKPEISVEAENKSEVEK-PLFARPSE 721
T AG+A+ + S N D + DVKP I+ E+ +KS+V K + P++
Sbjct: 694 AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 753
Query: 722 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 781
C+SL LP ++A KISRL + N G AI ALASN +HL+W+W R + S +AT V P+L
Sbjct: 754 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 813
Query: 782 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 841
+QP G M ND TDSN +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP
Sbjct: 814 WQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP 872
Query: 842 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 901
P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GHSKR+TGL FS ALN+LV
Sbjct: 873 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 932
Query: 902 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 961
SSG D+Q+ VW DGW Q R LQ P G A S+T +QFH+DQ FL+VHET LAI+
Sbjct: 933 SSGADSQLCVWGSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 992
Query: 962 EAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1020
E +L C+KQW P SS PI+ ATFSCD ++V+ F+D T+ + A+NL+++CRI +AY
Sbjct: 993 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1052
Query: 1021 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1071
L P +V+P IAAHP +P +FA+GL++G V+V EP E W V PP
Sbjct: 1053 L-PAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1102
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1091 | ||||||
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.735 | 0.716 | 0.561 | 1.50000000019e-314 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.791 | 0.763 | 0.536 | 4.69999999998e-313 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.648 | 0.625 | 0.493 | 7e-270 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.321 | 0.474 | 0.361 | 8.1e-86 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.557 | 0.445 | 0.235 | 7.8e-17 | |
| MGI|MGI:1918511 | 476 | Poc1b "POC1 centriolar protein | 0.231 | 0.531 | 0.244 | 3.5e-14 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.187 | 0.665 | 0.243 | 8.4e-14 | |
| TAIR|locus:2172432 | 523 | AT5G43920 "AT5G43920" [Arabido | 0.168 | 0.351 | 0.264 | 9.9e-14 | |
| FB|FBgn0040066 | 361 | wds "will die slowly" [Drosoph | 0.187 | 0.567 | 0.247 | 1.1e-13 | |
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.187 | 0.613 | 0.243 | 1.2e-13 |
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2336 (827.4 bits), Expect = 1.5e-314, Sum P(2) = 1.5e-314
Identities = 464/827 (56%), Positives = 591/827 (71%)
Query: 255 PTNKAVTMDRPE-DSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQS 313
P+N AV D P DSD +S+++ ++++ S GV++ +P P + Q+
Sbjct: 288 PSNSAV--DYPSGDSDHVSKRTRPMGISDEVSL----GVNM--LPMTFPGQAHGHN--QT 337
Query: 314 FGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIR 373
F D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L +
Sbjct: 338 FKAPD--DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQK 394
Query: 374 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
FKVWD+ CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct: 395 TFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQ 454
Query: 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CP
Sbjct: 455 HLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICP 514
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
H KENI FIFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+G
Sbjct: 515 HYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDG 574
Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
ESF+VEWNESEGA+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ +QLL
Sbjct: 575 ESFIVEWNESEGAVKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLL 632
Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSV 672
T IDA GGL +PRI FNK G+LLAV AN+N IK++ + + LS K ++
Sbjct: 633 TAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAI 692
Query: 673 NPISTVTG-AGIANGSVSNEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLP 728
N I V A + + N D + DVKP I+ E+ +KS+V K PS+C+SL LP
Sbjct: 693 NSIPMVERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752
Query: 729 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 788
++ KISRL + N G AI ALASN +HL+W+W RND + +AT +PP+ +QP G
Sbjct: 753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812
Query: 789 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 848
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT L
Sbjct: 813 -LMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 871
Query: 849 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 908
AF+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ
Sbjct: 872 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 931
Query: 909 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 968
+ VW+ DGW Q + LQ P G T + S+T +QFH+DQ FL+VHET LAIYE +L C
Sbjct: 932 LCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLEC 991
Query: 969 LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1026
+KQW P+ S+ PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S
Sbjct: 992 MKQW-PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLS 1050
Query: 1027 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1073
+V+P IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1051 NSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2329 (824.9 bits), Expect = 4.7e-313, Sum P(2) = 4.7e-313
Identities = 480/895 (53%), Positives = 608/895 (67%)
Query: 223 PPQTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPV 277
P Q T SP + W S S + AVS A++L P+ A + P +
Sbjct: 238 PFQPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYP 296
Query: 278 RILNEQASTVTYP-GVSLK-NIP-DYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGS 334
+E S T P G+S + N+ + P S + S + D PKTVA+TL +GS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
S PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L + FKVWD+ CSM + ALV++
Sbjct: 357 S-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK 454
P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND++FS P K
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNK 475
Query: 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
Q+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAW
Sbjct: 476 QLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535
Query: 515 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574
LYD++G+RVDYDAPG CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQG
Sbjct: 536 LYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634
+ S+ VV FDT K++ LAAGDD IK WDM+ VQLLT ID GGL +PRI FNK G
Sbjct: 596 HKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEG 653
Query: 635 TLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTV-----TGAGIANGSV 688
+LLAV NEN IKI+ + + +S K ++N I+ T AG A+ S
Sbjct: 654 SLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSA 713
Query: 689 S-------NEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLPSKVKANKISR 738
+ N D + DVKP I+ E+ +KS++ K + PS+C+SL LP ++ KISR
Sbjct: 714 NVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISR 773
Query: 739 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 798
L + N G AI ALASN +HL+W+W RN+ + +AT +PP+ +QP G M ND ++
Sbjct: 774 LIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI-LMTNDVAET 832
Query: 799 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 858
N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+I
Sbjct: 833 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 892
Query: 859 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 918
AIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DGW
Sbjct: 893 AIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWE 952
Query: 919 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV 978
Q + L P G APS+T +QFH+DQ FL+VHET LAIYE +L C+KQW S+
Sbjct: 953 KQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESL 1012
Query: 979 -PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1037
PI+ ATFSCD ++V+ SF+D T+ + ++NL ++CR+ +AYL + S +V+P IAA
Sbjct: 1013 APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAA 1072
Query: 1038 HPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDRAMD 1090
HP +P FAVGL++G V++ EP E W V PP E PT+ S G A D
Sbjct: 1073 HPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASD 1127
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1727 (613.0 bits), Expect = 7.0e-270, Sum P(2) = 7.0e-270
Identities = 363/736 (49%), Positives = 480/736 (65%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+ L G+W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M ELK++IEANP+ + KL FPS K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQ-------LQETDF--SGQSSESNALPPQTTQSPS 231
NWQH C NP+PNPDI TLF+DH C L + + + SN +P P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPF 239
Query: 232 SWNFSSSMLTDSAVSFVAL---SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVT 288
N + + ++ ++A S S P+ P ++E R + +
Sbjct: 240 QSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMD 299
Query: 289 YPGVSLKNIPDYSPKSSLKKEMF---QSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPV 345
Y + + + E+ S S D P+ V T+ +GS +SMDFHP
Sbjct: 300 YQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV-ISMDFHPS 358
Query: 346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405
HTLL VG + G+ LW+V S +K+ FK+W++ ACS++F+ ++V++P +SV RV WS
Sbjct: 359 HHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWS 418
Query: 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465
PDG+LLGV+++KH++ +YAY G SD RQ LEIDAHVG VNDLAF+ P KQ+ V+TCGDDK
Sbjct: 419 PDGNLLGVSFTKHLIHVYAYQG-SDLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDK 477
Query: 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525
IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD++G+RVDY
Sbjct: 478 LIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDY 536
Query: 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585
DAPG CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G + + S VV
Sbjct: 537 DAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKK--SAGVVQ 594
Query: 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645
FDT +++ LA G+D+ IK W+M+ LLT ++A GGLP PR+ FNK+G LLAV +N
Sbjct: 595 FDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNG 654
Query: 646 IKILETPES-NSVDAAGVLSDNLRKLSVN-PISTVTGAGI---ANGSVSNEDPKEDVKPE 700
KIL + ++ A S K S++ +ST A A G + + D +P
Sbjct: 655 FKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPT 714
Query: 701 -ISVEAENKSE-VEKP 714
I E S +EKP
Sbjct: 715 PIPNGIEAMSRTMEKP 730
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 8.1e-86, Sum P(2) = 8.1e-86
Identities = 132/365 (36%), Positives = 198/365 (54%)
Query: 719 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 778
PS+C +L+LP KI+RLTY+ G I ALA + H +W W + E
Sbjct: 375 PSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQNEFCKE-NVYPK 433
Query: 779 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 838
PRL+QP+ G + M N+ S Q++ CFA+ +YLFS SGG I+++ + F+ + +
Sbjct: 434 PRLHQPQSG-KTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEKVASF 489
Query: 839 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 898
P+P AT F P D ++A+G+DD +I I+ S +V KLEGH +++T L FS N
Sbjct: 490 GSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFN 547
Query: 899 ILVSSGGDAQIFVWDVDGWGIQTCR-SLQTPDGVMTLAPSE--THIQFHKDQTRFLLVHE 955
+LVSS D ++ +W W T + S + L + THIQF Q L+VH+
Sbjct: 548 VLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHD 607
Query: 956 THLAIYEAEELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1014
+ +YE L C QW P +S P I+ AT+S D +++ F G++ I ++ C+
Sbjct: 608 GWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQ 667
Query: 1015 ILSTAYLRPTTS--CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1072
I T++ + +TS L VYP +AAHP P Q + GL+NG+V V++P G W P
Sbjct: 668 INLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-WGEAAPL 726
Query: 1073 EIVGD 1077
E GD
Sbjct: 727 EDNGD 731
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
Identities = 165/700 (23%), Positives = 295/700 (42%)
Query: 300 YSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFH--PVQHTLLLVGTNVG 357
+SP+ S+ + +F ++ + +S PK V QT S+ +++ H PV+ +
Sbjct: 711 FSPEGSITRRIF-NYNLSGWSQLPK-VEQTW---SAEQQTLENHLGPVESVVFSPDGKQL 765
Query: 358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417
+G +D K+WD A L +T L G +V + +SPDG LL
Sbjct: 766 VSGSYD---------DTVKIWD-PATGELLQT-LDGHSG-TVESLAFSPDGKLLASGSYD 813
Query: 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477
+ + L+ G + Q E H ++ +AF+ K+++ + DD TIK+WD TG
Sbjct: 814 NTIDLWDSATG-ELLQTFE--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGEL 868
Query: 478 TYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTR 534
+ + H V S+ P K + S S+D IK W + + G G +
Sbjct: 869 QQTLDSHSQSVRSVAFSPDGK----LLASSSLDSTIKVW--NPATGELQQSLEGRSGWVK 922
Query: 535 -MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 593
+A+S +G++L S G+ K WN + G + +T +G SV V F Q+
Sbjct: 923 SVAFSPDGKKLAS-GSEKNTVKL---WNPATGELLQTLEG---HSQSVRSVAFSPDGKQL 975
Query: 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI--LET 651
++ D IK+W+ +L T G L + F+ +G L +++N IK+ L T
Sbjct: 976 ASSSSDTTIKLWNSTTGELQQTFK-GHDLWIRA-VAFSPDGKHLVSGSDDNTIKLWDLAT 1033
Query: 652 PE--------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSN--EDPKEDVK--- 698
E S SV A D+ + S + ST+ A G + E + V+
Sbjct: 1034 SELQQSLEDHSRSVHAVAFSPDDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVT 1093
Query: 699 --PEISVEAENKSEVEKPLFARP--SECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 754
P+ + A N + L+ P E Q L +++ + + ++ G+ + + +
Sbjct: 1094 FSPDGKLLASNSYDGTIKLW-NPLTGELQQTLTG---RSDWVDSVAFSPDGKQLASGYYD 1149
Query: 755 GVHLMWRWPRNDLTLSTEA-TTKVPPRLYQP-----RHGPQFMVNDTTDSNSQEAVPCF- 807
+W +L + E + ++ ++ P G D + E + F
Sbjct: 1150 STIKLWDSATGELLQTLEGHSDRIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFE 1209
Query: 808 ---------ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 857
A S + L S+S G I L+ +T + + T+ P +A S+AF+P N +
Sbjct: 1210 GHSKWVESVAFSPDGKLLASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRL 1269
Query: 858 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI--FVWDVD 915
++ + D+ I ++ + E++ L+GHSK V + ++I + Q +W
Sbjct: 1270 ASVDIFDTKI--WDPATGELLQALKGHSKWVWSRTGA-GISIFLDQWLCLQEKRILWLPQ 1326
Query: 916 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 955
+ C S+ DGV+ L S + F + RFL+ E
Sbjct: 1327 SYQ-PFCISVN--DGVLVLGHSSGRVSFIQGP-RFLIESE 1362
|
|
| MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 65/266 (24%), Positives = 108/266 (40%)
Query: 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486
G D + H + FS CKQI+ T D + +W +R Y + GH
Sbjct: 4 GLEDPILERSFKGHKAAITSADFSPNCKQIA--TASWDTFLMLWSLKPHARAYRYVGHKD 61
Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546
V SL + N+ + S S D ++ W+ D G ++ A + +SA+G+ L
Sbjct: 62 VVTSLQFSPQGNL--LASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLV- 118
Query: 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
T+ E +S V W+ +R L + V F I++ +D IKIWD
Sbjct: 119 --TASEDKSIKV-WSMFR---QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172
Query: 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 666
Q + G + FN NGT +A +++ +KI + + + V S
Sbjct: 173 TTNKQCVNNFSDSVGFANF--VDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG 230
Query: 667 LRKLSVNPISTVTGAGIANGSVSNED 692
+ LS +P+ ++G+V D
Sbjct: 231 VNCLSFHPLGNSLVTASSDGTVKMLD 256
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 53/218 (24%), Positives = 103/218 (47%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
|
|
| TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 9.9e-14, Sum P(3) = 9.9e-14
Identities = 54/204 (26%), Positives = 96/204 (47%)
Query: 7 DLVFLILQFLNEEGFTESAHMLERESRFYF---DMKFFEDMILDGKWEDVEQYLSSF--T 61
+ + +++Q L GF SA LE ES+ + D +F E +L G W+ Q L
Sbjct: 19 EFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDN 78
Query: 62 KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 121
+DD R +T +Y + KQ E L D++ ALN+L+K G E++ + ++
Sbjct: 79 SMDDTR-NTALYL-VFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYS 136
Query: 122 DDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLN 181
++ E+ + L R+ +++EL+++I PI+ I +RL L+ ++
Sbjct: 137 KEMESGEVDNCL---VLDLRRKLLVELEKLIPL-PIV--------IPERRLEHLVETAVM 184
Query: 182 WQHVHCANPQPNPDINTLFVDHVC 205
Q C + D +L+ DH C
Sbjct: 185 DQIDTCMYHN-SCDAVSLYKDHCC 207
|
|
| FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 54/218 (24%), Positives = 104/218 (47%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ + +
Sbjct: 74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
++ DDKT+KVW+ TG + +GH Y C + + I S S D ++ W
Sbjct: 130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVR 186
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 187 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 240
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 241 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 278
|
|
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 53/218 (24%), Positives = 103/218 (47%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WV90 | TPR1_ARATH | No assigned EC number | 0.5449 | 0.9596 | 0.9348 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1091 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-27 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 2e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-06 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 1e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-27
Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 47/324 (14%)
Query: 331 IEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT 389
++G + + F P L TG D KVWD+ +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLA--------TGSGD---------GTIKVWDL--ETGELLR 45
Query: 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 449
L V V S DG+ L S ++L+ G R + H V+ +AF
Sbjct: 46 TLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAF 101
Query: 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 509
S P +I + + DKTIKVWD TG + GH V S+ + F+ S S DG
Sbjct: 102 S-PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS--PDGTFVASSSQDG 157
Query: 510 KIKAWLYDSLGARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
IK W D + G +A+S +G +L S + G L W+ S G
Sbjct: 158 TIKLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKL--WDLSTGKC 211
Query: 568 KRTYQGLQLQH-NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
T +G H N V+ V F + + +D I++WD+ + + T+ N
Sbjct: 212 LGTLRG----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG----HTNS 263
Query: 627 --RICFNKNGTLLAVIANENRIKI 648
+ ++ +G LA + + I+I
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.1 bits (222), Expect = 1e-18
Identities = 90/420 (21%), Positives = 161/420 (38%), Gaps = 29/420 (6%)
Query: 291 GVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL 350
G SL ++ S SS + + S P + L S S+ F P LL
Sbjct: 22 GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LL 80
Query: 351 LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409
L G++ G LWD+++G+KL +L SV+++ SPDG+
Sbjct: 81 LSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHDSSVSKLALSSPDGN 123
Query: 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469
+ +A S + + + + ++ H +V LAFS P ++ D TIK+
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKL 182
Query: 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529
WD TG + GH PV SL + S S DG I+ W + +
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLSTGKLLRSTLSGH 241
Query: 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589
++S +G L S + + + + S L +SV V F
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT------LSGHSSSVLSVAFSPD 295
Query: 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKI 648
+ + D +++WD+ +LL+++ G + F+ +G+LL +++ I++
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355
Query: 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENK 708
+ + S N+ +S +P V +G +G+V D ++
Sbjct: 356 WDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 26/213 (12%)
Query: 804 VPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 862
V C A S + L + SG G I ++ + T + + T+ + +A + D +A G
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70
Query: 863 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 922
D TI +++ + E + L GH+ V+ + FS IL SS D I VWDV+ T
Sbjct: 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TG 125
Query: 923 RSLQT----PDGVMTLAPSETHIQF----HKDQTRFLLVHETHLAIYEAEELTCLKQWFP 974
+ L T D V ++A S F +D T + +++ C+
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGT----IK-----LWDLRTGKCVAT-LT 174
Query: 975 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007
+ ++ FS D + +S DGT+ + + S
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 18/208 (8%)
Query: 801 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 859
V A S + L S+S I ++ V T K + T+ + S+AF+P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 860 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWG 918
D TI +++ R+ + ++ L GH+ V + FS L+SS D I +WD+ G
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 919 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPI 975
+ T R +GV ++A S +LL + + +++ C++
Sbjct: 212 LGTLRG--HENGVNSVAFS---------PDGYLLASGSEDGTIRVWDLRTGECVQT-LSG 259
Query: 976 SSVPISQATFSCDCRMVFTSFVDGTLSI 1003
+ ++ +S D + + + DGT+ I
Sbjct: 260 HTNSVTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 2e-12
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 34 FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAK 92
+ + K ++IL G W++ ++LSS R S K+ FE+RKQ F E + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 801 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 859
V A S + L S+S G I L+ + T K + T+ S+AF+P + +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236
Query: 860 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913
G +D TI +++ R+ E + L GH+ VT L +S L S D I +WD
Sbjct: 237 -GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.9 bits (159), Expect = 6e-11
Identities = 70/359 (19%), Positives = 138/359 (38%), Gaps = 16/359 (4%)
Query: 664 SDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPS-EC 722
D++ ++ +P + +G ++G++ D K S+E + S V K + P
Sbjct: 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS 124
Query: 723 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 782
L S K+ L+ S V + P + L++ ++ +L+
Sbjct: 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLW 183
Query: 783 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMP 840
R G V A S + L ++ G I L+ + T K + + +
Sbjct: 184 DLRTGKPLSTLAGHTDP----VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239
Query: 841 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDALNI 899
+ +F+P D +++A G D TI +++ RS S ++ L GHS V + FS +
Sbjct: 240 GHSDSVVSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298
Query: 900 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA 959
L S D + +WD++ + + +L+ +G + + F D + +
Sbjct: 299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEG------PVSSLSFSPDGSLLVSGGSDDGT 352
Query: 960 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1018
I + T + +FS D R+V + DGT+ + + S + +
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.0 bits (154), Expect = 2e-10
Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 13/222 (5%)
Query: 810 SKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 868
+ S+ G + L+ + T K I T+ S + TSLAF+P + + D TI
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181
Query: 869 IYNARSSEVISKLEGHSKRVTGLVFS-DALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQ 926
+++ R+ + +S L GH+ V+ L FS D ++ S D I +WD+ +++ S
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241
Query: 927 TPDGVMTLAPSETHIQFHKDQTRFLLVHETH-LAIYEAEELTCLKQWFPISSVPISQATF 985
+ V + F D + + +++ + L + S + F
Sbjct: 242 SDSVVSS---------FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292
Query: 986 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1027
S D +++ + DGT+ + + ++ + + P +S
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.0 bits (154), Expect = 3e-10
Identities = 84/458 (18%), Positives = 172/458 (37%), Gaps = 71/458 (15%)
Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPVY 489
L + H ++ +AFS P ++ +++ D TIK+WD G + H + V
Sbjct: 56 LSSLLLRGHEDSITSIAFS-PDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS 113
Query: 490 SLCPHAKENIHFIFSIS-VDGKIKAW-LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547
L + + + + S +DG +K W L + T +A+S +G+ L S
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173
Query: 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWD 606
+ + W+ G T G + VS + F I + D I++WD
Sbjct: 174 SSLD---GTIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227
Query: 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SD 665
++ +LL + +G ++ F+ +G+LLA +++ I++ + S+S+ S
Sbjct: 228 LSTGKLLRSTLSG--HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 666 NLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 725
++ ++ +P + +G ++G+V L+ +
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVR-------------------------LWDLETGKLLS 320
Query: 726 LLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 784
L K +S L+++ +G + + +G +W + E
Sbjct: 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE------------ 368
Query: 785 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSP 843
V + S + + S S G + L+ + T + + +
Sbjct: 369 ---------------GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413
Query: 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881
TSL F+P D +A G D+TI +++ ++S
Sbjct: 414 RVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.6 bits (153), Expect = 3e-10
Identities = 86/471 (18%), Positives = 174/471 (36%), Gaps = 75/471 (15%)
Query: 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515
I ++ D + + D + GH + S+ + + S S DG IK W
Sbjct: 40 ILLLALLSDSLVSLPD----LSSLLLRGHEDSITSIAFS--PDGELLLSGSSDGTIKLWD 93
Query: 516 YDSLGARVD--YDAPGLGCTRMAY-SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
D+ + +++A S +G + +S +G + W+ S
Sbjct: 94 LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG--TVKLWDLSTPGKLIRT- 150
Query: 573 GLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631
L+ SV+ + F + + D IK+WD+ + L+T+ + + F+
Sbjct: 151 -LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS--LAFS 207
Query: 632 KNGTLLAVIANENR-IKI--LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688
+G LL + + I++ L T + +G + S + +G+ ++G++
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS--SDGTI 265
Query: 689 SNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 748
D + ++ + S + + ++ G+ +
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSS--------------------------VLSVAFSPDGKLL 299
Query: 749 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 808
+ +S+G +W DL ++ T + V +
Sbjct: 300 ASGSSDGTVRLW-----DLETGKLLSSL-------------------TLKGHEGPVSSLS 335
Query: 809 LSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST 866
S + + L S G I L+ + T K + T+ S S++F+P D V++ G D T
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDGT 393
Query: 867 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 917
+ +++ + ++ L+GH+ RVT L FS L S D I +WD+
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.7 bits (130), Expect = 2e-07
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 27/203 (13%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
+TL SSS +S+ F P LL G++ G LWD+ +G+ L K
Sbjct: 278 RTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK----------- 325
Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVND 446
V+ + +SPDGSLL S ++L+ + L+ NV
Sbjct: 326 ------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL----RTGKPLKTLEGHSNVLS 375
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
++FS + +S + D T+++WD TGS + +GH + V SL + S S
Sbjct: 376 VSFSPDGRVVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS--LASGS 431
Query: 507 VDGKIKAWLYDSLGARVDYDAPG 529
D I+ W + V + G
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 881 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 940
L+GH+ VT + FS +L + GD I VWD++ + T V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPV-------RD 56
Query: 941 IQFHKDQTRFLLVHETHLA-IYEAEELTCLKQWF----PISSVPISQATFSCDCRMVFTS 995
+ D T +++ E C++ +SSV FS D R++ +S
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-----AFSPDGRILSSS 111
Query: 996 FVDGTLSIHE 1005
D T+ + +
Sbjct: 112 SRDKTIKVWD 121
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 11/159 (6%)
Query: 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590
G T +A+S +G+ L + + W+ G + RT +G V V
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGT----IKVWDLETGELLRTLKGHTG---PVRDVAASADG 63
Query: 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKIL 649
+ + D I++WD+ + + T+ G + F+ +G +L+ + + IK+
Sbjct: 64 TYLASGSSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688
+ + +D + ++ +P T + +G++
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 40/180 (22%)
Query: 321 DFPKTVAQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---- 375
D T + G + S+ F P T + + G LWD+ +G+ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK--CVATLTGHT 177
Query: 376 ------------------------KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411
K+WD+ S +R VN V +SPDG LL
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
++++ G + H +V LA+S K+ + + D TI++WD
Sbjct: 235 ASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKR--LASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-06
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 874 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913
S E++ L+GH+ VT + FS L S D I +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 4 LNKDLVFLILQFLNEEGFTESAHMLERESRF 34
+L LIL++L G+ E+A L++ES
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 876 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913
+++ L+GH+ VT + FS N+L S D + VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
+ + H G V +AFS + + DD T++VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
+ H G V +AFS K + + DD TIK+WD
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 848 LAFNPHDNNVIAIGMDDSTILIYN-------ARSSEVISKLEGHSKRVTGLVF-SDALNI 899
+AFNP D + +D TI+ + S+ I L+GH+K+V + F A+N+
Sbjct: 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140
Query: 900 LVSSGGDAQIFVWDVD 915
L S+G D + VWDV+
Sbjct: 141 LASAGADMVVNVWDVE 156
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1091 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.98 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.89 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.79 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.79 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.77 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.77 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.77 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.76 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.75 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.73 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.72 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.71 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.7 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.68 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.68 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.65 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.65 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.64 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.64 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.64 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.63 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.62 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.61 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.61 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.59 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.59 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.58 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.56 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.55 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.54 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.53 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.53 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.52 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.52 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.52 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.52 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.5 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.49 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.48 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.46 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.46 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.44 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.43 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.43 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.41 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.4 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.39 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.38 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.38 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.38 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.35 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.35 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.33 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.32 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.32 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.32 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.3 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.28 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.27 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.26 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.22 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.22 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.16 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.15 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 99.04 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.03 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.0 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.99 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.98 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.95 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.95 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.93 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.91 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.91 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.91 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.84 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.83 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.81 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.79 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.77 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.75 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.74 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.74 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.71 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.7 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.69 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.68 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.66 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.66 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.65 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.63 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.59 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.58 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.58 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.58 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.57 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.57 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.57 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.55 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.55 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.53 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.52 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.52 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.5 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.46 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.46 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.45 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.45 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.42 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.39 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.39 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.38 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.38 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.29 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.29 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.2 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.2 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.18 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.18 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.1 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.09 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.07 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 98.06 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.04 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.03 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.0 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.98 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.95 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.92 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.9 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.88 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.88 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.87 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.87 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.86 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.86 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.85 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.8 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.77 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.73 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.72 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.71 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.71 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.68 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.62 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.6 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.55 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.52 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.5 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.49 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.46 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.46 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.37 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.35 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.3 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.2 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.18 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.17 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.15 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.09 | |
| PRK10115 | 686 | protease 2; Provisional | 97.03 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.0 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.99 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.97 | |
| PRK10115 | 686 | protease 2; Provisional | 96.95 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.91 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.88 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.86 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.85 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.81 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.8 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.78 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.75 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.71 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.71 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.7 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.69 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.65 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.61 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.53 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.43 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.28 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.22 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.16 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.14 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.06 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.05 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.04 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.04 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.9 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.85 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.84 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.76 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.69 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.59 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.59 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.57 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.54 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.49 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.18 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.13 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.91 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.87 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.72 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.68 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.47 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.39 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 94.35 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.3 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.23 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.96 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.94 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.91 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.73 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.71 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.64 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.51 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.41 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.2 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 92.91 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.75 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.75 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.66 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.49 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.17 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.91 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.52 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 91.33 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.32 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.15 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 91.12 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 91.07 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 91.06 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 90.89 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 90.82 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 90.73 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 90.69 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 90.56 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 90.53 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.36 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 90.28 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 89.99 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 89.88 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.82 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.34 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 89.18 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.17 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.01 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 88.98 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.93 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 88.58 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 88.34 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.1 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 87.94 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 87.02 | |
| PLN02153 | 341 | epithiospecifier protein | 87.0 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 86.9 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 86.79 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 86.58 | |
| PLN02193 | 470 | nitrile-specifier protein | 86.56 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 86.34 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 86.14 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 85.82 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 85.78 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 85.67 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 85.42 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 85.12 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 85.12 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 84.87 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 83.57 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 83.41 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 83.3 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 83.27 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 82.42 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 81.71 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 81.21 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 81.19 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 81.02 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 80.72 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 80.46 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 80.25 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-72 Score=553.19 Aligned_cols=492 Identities=21% Similarity=0.314 Sum_probs=415.7
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhh
Q 001367 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1091)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1091)
+.|++|++.|+|+++||.+|+.+||.|||+.+. .+.|.+++++|+|+.++..+..+. +++.+.+.++.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 569999999999999999999999999999874 899999999999999999998773 3334446679999999999
Q ss_pred hhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCCChHHHHHHHHHHHHhhhcCcccccc
Q 001367 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 161 (1091)
Q Consensus 82 lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 161 (1091)
||++..|...+|+.+||+...++. +..+++++|+.-+..++-....+... .-.....|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999888886 57788999988766544322222111 112356899999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCCCCCcccCCCCCCCCCCCCCCCCCCceeecCCCCC
Q 001367 162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 241 (1091)
Q Consensus 162 ~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sl~~dh~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 241 (1091)
+|++||++||+||++||+++|+||| ..+..|||.||.|.+ .+ +|+++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~q------ip~qt--------------- 216 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQ------IPSQT--------------- 216 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------cc------CCchh---------------
Confidence 9999999999999999999999999 566689999999988 44 34443
Q ss_pred CcccccccccCCCCCCccccccCCCCCCccccCccccccccCCCcccccCcccCCcCCCCCCcchhhhcccccCCcccCC
Q 001367 242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321 (1091)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsP~~~~~~~~~~~~~~~~~~~ 321 (1091)
T Consensus 217 -------------------------------------------------------------------------------- 216 (519)
T KOG0293|consen 217 -------------------------------------------------------------------------------- 216 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
.++|..|+++||.+.||++|+ +||+++.|.+..||++.....+.- ..++.+|..+|..
T Consensus 217 -----~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y 274 (519)
T KOG0293|consen 217 -----WQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY 274 (519)
T ss_pred -----hhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence 356789999999999999998 579999999999999876554221 1238899999999
Q ss_pred EEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe
Q 001367 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1091)
+.||||.+||++|+.|..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|++|..||+. |..+..+
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcc
Confidence 9999999999999999999999999998765331 24668999999999999 79999999999999955 5556666
Q ss_pred cCCC-cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 482 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 482 ~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
++-. ..|.++++ +.||.++++.+.|..|++++.++...+.. .....+|++++.|.|++++++.-. +..+.+|
T Consensus 350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~----~qei~LW 422 (519)
T KOG0293|consen 350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ----DQEIHLW 422 (519)
T ss_pred cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence 6543 56888888 56889999999999999999887665543 335568999999999999988765 4559999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc-CCCEEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV 639 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~ 639 (1091)
|++....++.+.||......|.++.-..+..++++||+|+.|+||+..+|+++..+.+|.. .|++|+|+| +..++|+
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFAS 500 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhc
Confidence 9999999999999996666677765566678999999999999999999999999998875 799999999 5678999
Q ss_pred EECCCeEEEEECC
Q 001367 640 IANENRIKILETP 652 (1091)
Q Consensus 640 ~~~dg~i~iwd~~ 652 (1091)
+++||+|+||...
T Consensus 501 asDDgtIRIWg~~ 513 (519)
T KOG0293|consen 501 ASDDGTIRIWGPS 513 (519)
T ss_pred cCCCCeEEEecCC
Confidence 9999999999765
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-63 Score=472.94 Aligned_cols=492 Identities=18% Similarity=0.278 Sum_probs=403.5
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhh
Q 001367 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1091)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 79 (1091)
-..+|||||+|||+|+.+++++++||+|+++++| ++.|-+.|.+|+||.++..+++| +++.+.+..||+|
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence 4569999999999999999999999999999997 89999999999999999999998 5555678899999
Q ss_pred hhhhhhcCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHhhcccccccchhccccccCCChHHHHHHHHHHHHhhhcCcc
Q 001367 80 NFFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPI 157 (1091)
Q Consensus 80 ~~lEll~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~ 157 (1091)
..|||+|.++...|..+||+. +.-+.+.+|++|-+|+.||..+.++..+.+. +..++.|+. .|.+.++.++-
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa---~IAQ~ls~EV~ 153 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRA---VIAQALSGEVH 153 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHH---HHHHHhcCceE
Confidence 999999999999999999983 3335667899999999999999999888732 245777774 44555554332
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCCCCCcccCCCCCCCCCCCCCCCCCCceeecC
Q 001367 158 LQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSS 237 (1091)
Q Consensus 158 ~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sl~~dh~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 237 (1091)
.+||+||+.||+||++||+++.+.|..+ ...||..-.-.+
T Consensus 154 --------VVppSRLlaLlGQaLKWQqHQGLLPPGt--~iDLFRGkAA~K------------------------------ 193 (508)
T KOG0275|consen 154 --------VVPPSRLLALLGQALKWQQHQGLLPPGT--TIDLFRGKAAMK------------------------------ 193 (508)
T ss_pred --------EcChHHHHHHHHHHhhhHhhcCCCCCCc--eeeeccchhhhh------------------------------
Confidence 3899999999999999999997766421 112222000000
Q ss_pred CCCCCcccccccccCCCCCCccccccCCCCCCccccCccccccccCCCcccccCcccCCcCCCCCCcchhhhcccccCCc
Q 001367 238 SMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGET 317 (1091)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsP~~~~~~~~~~~~~~~ 317 (1091)
...|..||.+..
T Consensus 194 ---------------------------------------------~~~Ee~~Pt~l~----------------------- 205 (508)
T KOG0275|consen 194 ---------------------------------------------DQEEERYPTQLA----------------------- 205 (508)
T ss_pred ---------------------------------------------hhHhhhchHHhh-----------------------
Confidence 001222443332
Q ss_pred ccCCCchheeeec-ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC
Q 001367 318 SFSDFPKTVAQTL-IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1091)
Q Consensus 318 ~~~~~p~~~~~~l-~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 396 (1091)
+.+ .|.+..+.|..|||||+ +|++|+.||.|.|||..+|+......++.- .-+.-+.
T Consensus 206 ----------r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAq-----------d~fMMmd 263 (508)
T KOG0275|consen 206 ----------RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ-----------DNFMMMD 263 (508)
T ss_pred ----------hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhh-----------cceeecc
Confidence 222 25556889999999999 679999999999999999998765433211 1145588
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
.+|.|+.||.|...||+|+.||.|+||.+.+|.+++..- +.|+..|+++.||.|+. .+++++.|.++++.-+.+|+
T Consensus 264 ~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK 339 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGK 339 (508)
T ss_pred cceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccch
Confidence 999999999999999999999999999999999998532 28999999999999999 69999999999999999999
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC--CcEEEEEEcCCC-CEEEEEecCCCC
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSANG-RRLFSCGTSKEG 553 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~d~-~~l~~~~~~~~~ 553 (1091)
+++.|+||..-|+...| .++|..+++++.||+|++|+..+.++..+++..+ .+|.++..-|.+ ..+++|..
T Consensus 340 ~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr---- 413 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR---- 413 (508)
T ss_pred hHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC----
Confidence 99999999999999999 5688999999999999999999999888776543 467787777744 56777754
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
.+++++.++. |+.++.+.......+...+++.+|.|.++++.++|+.++.|...+|++..++..+.. .+..++-+|.
T Consensus 414 sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPH 490 (508)
T KOG0275|consen 414 SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPH 490 (508)
T ss_pred CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcc
Confidence 5669998874 677888876554556777888999999999999999999999999999999998866 6789999999
Q ss_pred CCEEEEEECCCeEEEEE
Q 001367 634 GTLLAVIANENRIKILE 650 (1091)
Q Consensus 634 ~~~l~~~~~dg~i~iwd 650 (1091)
.+.+|+-+.||.+++|.
T Consensus 491 qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cchhhhhcccchhhhcC
Confidence 99999999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=498.24 Aligned_cols=576 Identities=18% Similarity=0.249 Sum_probs=494.8
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCce-eeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCC
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 418 (1091)
++||++|+ +|++... ..|.+-|+.+++.. .. .-..-...+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 5676653 45899999999873 21 0223557899999999999999999999
Q ss_pred EEEEEEeeCCcccceeEEEec-cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccC
Q 001367 419 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1091)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1091)
.+++|++.+|+.++ .++. |++||.-++|+|.|. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 4555 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CceEEEEEecCCeEEEEecCCCCc-eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc
Q 001367 498 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576 (1091)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 576 (1091)
+...|++|..|+++++||++.... ...+..|.+.+++++|++|+..+++++. +..+.+||+.+.+..+.+...+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999996655 6788899999999999999999999987 6679999998877777776644
Q ss_pred cccceEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 577 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 577 ~~~~v~~v~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
.+.++.+-++ +.+++++|.+|.+++||.++++.......... ..+..+...+....++..+.|..+.+||.
T Consensus 235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEc
Confidence 6777777777 67999999999999999999988766654432 34666676676677788888999999999
Q ss_pred CCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCcc
Q 001367 652 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 731 (1091)
Q Consensus 652 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 731 (1091)
++.+....+-|..+.|..+.|- .|+.+.++.++..+.+|+|+.. ...|..+ .+
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l--------------------G~e~~~laVATNs~~lr~y~~~---~~~c~ii----~G 363 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL--------------------GPEESHLAVATNSPELRLYTLP---TSYCQII----PG 363 (775)
T ss_pred cccEEehhhcCCchhheeeeec--------------------CCccceEEEEeCCCceEEEecC---CCceEEE----eC
Confidence 9999999999999999999885 7888999999999999999765 3344432 46
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
|...|.++....+|..|++++.|.++++|.++.+.. .....-...+|...|.+++++.
T Consensus 364 H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~----------------------~~~~~a~~~gH~~svgava~~~ 421 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS----------------------KSLCVAQANGHTNSVGAVAGSK 421 (775)
T ss_pred chhheeeeeecccCcEEEEecCCceEEEEEecCCcc----------------------hhhhhhhhcccccccceeeecc
Confidence 999999999888888999999999999998733211 0000111236999999999987
Q ss_pred CC-CEEEEEe-CCeEEEEEccCceeE---------EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee
Q 001367 812 ND-AYLFSAS-GGVISLYIVMTFKTI---------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 880 (1091)
Q Consensus 812 dg-~~la~~~-dg~i~iwd~~~~~~~---------~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~ 880 (1091)
.+ .++++++ |+++++|++...+.. .+...|...|.+++++| +.+++|+|+.|++.+||+++.+....+
T Consensus 422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~v 500 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGV 500 (775)
T ss_pred cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEE
Confidence 65 5777777 899999999762211 12346899999999999 889999999999999999999999999
Q ss_pred eccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEE
Q 001367 881 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 959 (1091)
Q Consensus 881 l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~ 959 (1091)
+.||...|.++.|+|..+.|||+|.|++|+||.+++ ..++++++||.. .|..+.|-.+|+.|++ ++||-++
T Consensus 501 LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred eeCCccceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEE
Confidence 999999999999999999999999999999999999 558999999998 8999999999999998 7999999
Q ss_pred EEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 960 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 960 vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
+|++++++|+.. +.+|+.+|++++-++++.+++||+.||.|.+|.=.+
T Consensus 573 lWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 573 LWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999999998 678999999999999999999999999999996444
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-56 Score=473.91 Aligned_cols=589 Identities=14% Similarity=0.184 Sum_probs=479.5
Q ss_pred ccc-CCcCCCCCCcchhhhcccccCCcccCCCchhe-e-eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC
Q 001367 292 VSL-KNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV-A-QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ 368 (1091)
Q Consensus 292 ~~~-~~~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~-~-~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~ 368 (1091)
++| |.-..|+++++.+...+... -..++.-+... + ..-.+-.+.+++++.+||++ .|++++...-+++|++.+|+
T Consensus 18 piYtGG~~~~s~nG~~L~t~~~d~-Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk 95 (775)
T KOG0319|consen 18 PIYTGGPVAWSSNGQHLYTACGDR-VIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGK 95 (775)
T ss_pred ceecCCceeECCCCCEEEEecCce-EEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccch
Confidence 344 44578888888876665431 01111112222 1 12235567999999999998 67888999999999999998
Q ss_pred ceeeeceeEEeccccccceeeeeecC-CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEE
Q 001367 369 KLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447 (1091)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~ 447 (1091)
.++. ++. |+.+|.-++|+|.|..||+|+.|+.++|||+..+.+.. .|+||.+.|.++
T Consensus 96 ~irs-------------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl 153 (775)
T KOG0319|consen 96 LIRS-------------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSL 153 (775)
T ss_pred HhHh-------------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEE
Confidence 8865 444 99999999999999999999999999999999987655 789999999999
Q ss_pred EEcCCCCceEEEEeeCCCcEEEEeCCCCc-eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec
Q 001367 448 AFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1091)
Q Consensus 448 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1091)
.|.|+-...+|++|+.|+++++||+.++. ++..+..|...|+++++. +|+..+++++.|..+.+||+..-+....+.
T Consensus 154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~--~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp 231 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFS--EDSLELLSVGRDKVIIVWDLVQYKKLKTLP 231 (775)
T ss_pred EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeec--cCCceEEEeccCcEEEEeehhhhhhhheec
Confidence 99999887689999999999999999654 488899999999999995 467899999999999999996555444433
Q ss_pred CCCCcEEEEEEcCC-----CCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCe
Q 001367 527 APGLGCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d-----~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~ 601 (1091)
. ...+.++.+-++ +.++++.+. ++.+++||..+++++....... ...+..+...+....++....|..
T Consensus 232 ~-ye~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQn 304 (775)
T KOG0319|consen 232 L-YESLESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQN 304 (775)
T ss_pred h-hhheeeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccce
Confidence 2 234556666666 668888875 7789999999998876655442 233666666677778888889999
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCCceEEE-ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccccc
Q 001367 602 IKIWDMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1091)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1091)
+.++|.++.++...+.+... .|..++| .|+.++++++++.+.+++|+..+..+. .+.+|.+.|.+++.
T Consensus 305 l~l~d~~~l~i~k~ivG~nd--EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~-------- 373 (775)
T KOG0319|consen 305 LFLYDEDELTIVKQIVGYND--EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDV-------- 373 (775)
T ss_pred EEEEEccccEEehhhcCCch--hheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeee--------
Confidence 99999999999888876543 6888886 467899999999999999999888766 78999999998874
Q ss_pred ccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCC-eEEEeecCceEEE
Q 001367 681 AGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLM 759 (1091)
Q Consensus 681 ~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~dg~i~v 759 (1091)
...|-++++++.|.++++|.++.+... ........+|.+.|.+++++..+. .+++++.|+++++
T Consensus 374 -------------~~~g~llat~sKD~svilWr~~~~~~~--~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 374 -------------WSSGDLLATGSKDKSVILWRLNNNCSK--SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred -------------cccCcEEEEecCCceEEEEEecCCcch--hhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 455678999999999999988422111 111122357999999999987764 6788889999999
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEe
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI 838 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~ 838 (1091)
|+++..+.... +. ..........|...|++++++|+.+++|+|+ |.+.+||+++.+....++
T Consensus 439 W~l~~s~~~~~--------~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL 501 (775)
T KOG0319|consen 439 WDLPKSKETAF--------PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL 501 (775)
T ss_pred ecCCCcccccc--------cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe
Confidence 99987322100 00 1111223345999999999999999999999 899999999999999999
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001367 839 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 918 (1091)
Q Consensus 839 ~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~ 918 (1091)
.+|...|.++.|+| ..+.+|+++.|++|+||.+.+..++.++.||...|..+.|-.+|+.|+|++.||.|++|++++++
T Consensus 502 sGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred eCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 99999999999999 88999999999999999999999999999999999999999999999999999999999999955
Q ss_pred eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCC
Q 001367 919 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 965 (1091)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~ 965 (1091)
|...++.|.. .|++++.+|.+.++++ +.|+.|.+|.=.+
T Consensus 581 -----C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 581 -----CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred -----hhhhhhhccc---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 7888999987 9999999999999998 6899999996444
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=424.29 Aligned_cols=575 Identities=15% Similarity=0.194 Sum_probs=463.6
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 417 (1091)
.-+.-.|.|..+|.+.+ ..|.+-++........ +.+|..+++-..|||.|-|+|+|...
T Consensus 22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred eEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCc
Confidence 34555788888888765 6788888887765543 77899999999999999999999999
Q ss_pred CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee--CCCcEEEEeCCCCceeEEecCCCcceEEEeecc
Q 001367 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1091)
|+|+|||....+.+. ..+++.-.++|.+++|+.|+++ ++..+ .++-.+++-.++|.-+..+.||...|+++.|-|
T Consensus 81 G~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kp 157 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKP 157 (603)
T ss_pred CcEEEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccC
Confidence 999999998754332 2357778899999999999995 44443 344455555568888999999999999999977
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
+.. -.++++++|+.|.+|+=...+-...+..|..-|.++.|+|||.++++.+. ++.+++||-.+|+.+..+....
T Consensus 158 sRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 158 SRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred CCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCC
Confidence 643 57999999999999976666666677888889999999999999999987 6679999999999999999666
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCC-CceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE-NPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
.|.+.|.+++|+||+..+++++.|.+++|||+.+.+++.++........ -..+.|- +..|++.+.+|.|.+++....
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 6679999999999999999999999999999999999999987654211 1233444 668999999999999999999
Q ss_pred CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccc
Q 001367 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 734 (1091)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 734 (1091)
.....+.+|...|++++. +++++++++++.||.|.-|+...+.... +....|..
T Consensus 311 ~~~~~i~GHnK~ITaLtv---------------------~~d~~~i~SgsyDG~I~~W~~~~g~~~~-----~~g~~h~n 364 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTV---------------------SPDGKTIYSGSYDGHINSWDSGSGTSDR-----LAGKGHTN 364 (603)
T ss_pred ChhheecccccceeEEEE---------------------cCCCCEEEeeccCceEEEEecCCccccc-----cccccccc
Confidence 999999999999999998 8889999999999999999987544332 23345899
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.|.+++.+..+. +++++.|.++++.++..+...... . .+ ......+++..+|+.
T Consensus 365 qI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 365 QIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDGG 418 (603)
T ss_pred eEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCCC
Confidence 999999988777 888899999998876543221000 0 01 123344899999998
Q ss_pred EEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCccee--eeeccccCCeEEEE
Q 001367 815 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHSKRVTGLV 892 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~--~~l~~h~~~V~~l~ 892 (1091)
.++.+.++.|.+..-.++ ..+.. ..-...++|++| ++..+|+|+.||.|+||.+..+... ..+..|.++|++++
T Consensus 419 ~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 419 TAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred EEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 888888777666652222 22222 344678999999 9999999999999999999876533 45667999999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeee
Q 001367 893 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 971 (1091)
Q Consensus 893 ~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~ 971 (1091)
+|||+.+||++...+.+.+||+.+.+... ....-|.. .|.+++|||+.+++|+ +-|..|.||+++.......
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHta---kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ 567 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHTA---KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII 567 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeeee---eEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence 99999999999999999999999966421 11112333 7999999999999999 5789999999998776666
Q ss_pred eecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 972 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 972 ~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
....|...|+.+.|-.+. .|++.+.|..|++|++.
T Consensus 568 iknAH~~gVn~v~wlde~-tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWLDES-TVVSSGQDANIKVWNVT 602 (603)
T ss_pred eccccccCceeEEEecCc-eEEeccCcceeEEeccc
Confidence 678898889999998655 68888999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=423.38 Aligned_cols=590 Identities=16% Similarity=0.205 Sum_probs=451.8
Q ss_pred CcccCC-cCCCCCCcchhhhcccccCCcccCCCchheeeecc-cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC
Q 001367 291 GVSLKN-IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ 368 (1091)
Q Consensus 291 ~~~~~~-~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~ 368 (1091)
+..|+. -++|+|++..+-..- -+...+-++.+....||. .+...|++++.||+|. +|++....|...+-++....
T Consensus 12 GTvyr~Gnl~ft~dG~sviSPv--GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~ 88 (893)
T KOG0291|consen 12 GTVYRAGNLVFTKDGNSVISPV--GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRS 88 (893)
T ss_pred cceeecCcEEECCCCCEEEecc--CCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccce
Confidence 444533 466777643222111 111233344444444553 5566999999999997 56666788999999988877
Q ss_pred ceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcc-----cceeEEEeccccC
Q 001367 369 KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGN 443 (1091)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~ 443 (1091)
.++.++ -+.+|.|+.|||||+++|+|.. +.+.||....... .....+..+|...
T Consensus 89 Vlh~f~--------------------fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fdd 147 (893)
T KOG0291|consen 89 VLHRFN--------------------FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDD 147 (893)
T ss_pred eeEEEe--------------------ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccc
Confidence 776533 3479999999999999999864 4699998865432 2234456789999
Q ss_pred eeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce--eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC---
Q 001367 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--- 518 (1091)
Q Consensus 444 v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--- 518 (1091)
|.++.|+.|.+ +|++|+.|.++++|+++..+- .+.+.+|...|.+..| ..+...+++.+.||.+.+|....
T Consensus 148 i~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 148 ITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPP 223 (893)
T ss_pred eeEEEeccCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCCc
Confidence 99999999999 899999999999999887665 5778999999998877 44567899999999999997761
Q ss_pred --------------------CCc-----------eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 519 --------------------LGA-----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 519 --------------------~~~-----------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
++. ..-+......+++.+|++..+.|+++.. .+...+|.+....+
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~l 299 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNL 299 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCceE
Confidence 111 0012223357899999999999999886 44588999999999
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeE
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1091)
++.+.-.. ..|..++|+..|.+++.|+ .-|.+.||+..+..-+...++|. ..+.+++++|||+++|+|++||.|
T Consensus 300 ih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 300 IHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred EEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcE
Confidence 99988766 7899999999999999976 45899999999887777666554 479999999999999999999999
Q ss_pred EEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceee
Q 001367 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 726 (1091)
Q Consensus 647 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 726 (1091)
+|||..++-++.++..
T Consensus 375 KvWn~~SgfC~vTFte---------------------------------------------------------------- 390 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTE---------------------------------------------------------------- 390 (893)
T ss_pred EEEeccCceEEEEecc----------------------------------------------------------------
Confidence 9999998877766554
Q ss_pred cCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeE
Q 001367 727 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 806 (1091)
Q Consensus 727 ~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 806 (1091)
|...|+.+.|+..|+.+++.+-||+++.||+... .+..++..+ ......|
T Consensus 391 -----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfRTft~P---~p~Qfsc 440 (893)
T KOG0291|consen 391 -----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFRTFTSP---EPIQFSC 440 (893)
T ss_pred -----CCCceEEEEEEecCCEEEEeecCCeEEeeeeccc----------------------ceeeeecCC---CceeeeE
Confidence 5556677777788888888888888888886542 223333322 3456689
Q ss_pred EEecCCCCEEEEEe-C-CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc-eeeeecc
Q 001367 807 FALSKNDAYLFSAS-G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG 883 (1091)
Q Consensus 807 l~~s~dg~~la~~~-d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-~~~~l~~ 883 (1091)
++..|.|..+..|+ | =.|.+|++++|+.+..+.+|.++|.+++|+| .+..||+|+.|.+|++||+-... .+.+++
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~- 518 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE- 518 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-
Confidence 99999999999888 4 3599999999999999999999999999999 89999999999999999987543 445555
Q ss_pred ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee----eeee-------c-cCCCcCCCCCceEEEEcCCCCEEE
Q 001367 884 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC----RSLQ-------T-PDGVMTLAPSETHIQFHKDQTRFL 951 (1091)
Q Consensus 884 h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~----~~~~-------~-~~~~~~~~~~i~~l~fs~dg~~la 951 (1091)
+...+.+++|+|||+.||+++-||.|.+||++.+..... .-+. . ...+.......+.+++|+||.+|+
T Consensus 519 i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~Il 598 (893)
T KOG0291|consen 519 IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCIL 598 (893)
T ss_pred eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEE
Confidence 677899999999999999999999999999986543210 0000 0 000111114689999999999999
Q ss_pred E-EecCeEEEEEcCCcceeeeeecC----------------------------------------------------C--
Q 001367 952 L-VHETHLAIYEAEELTCLKQWFPI----------------------------------------------------S-- 976 (1091)
Q Consensus 952 ~-~~d~~i~vwd~~~~~~~~~~~~~----------------------------------------------------h-- 976 (1091)
+ |..+.|++||+.++..++.+... +
T Consensus 599 AgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~r 678 (893)
T KOG0291|consen 599 AGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFR 678 (893)
T ss_pred ecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccC
Confidence 8 67789999999987665542111 0
Q ss_pred -ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEE
Q 001367 977 -SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1014 (1091)
Q Consensus 977 -~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~ 1014 (1091)
.-.|.++.|||.|+.+|.++..| +.||.+.+.-....
T Consensus 679 peIrv~sv~fsPtgraFAaatTEG-l~IYsld~~~~FDP 716 (893)
T KOG0291|consen 679 PEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDTTILFDP 716 (893)
T ss_pred ceEEEEEEEECCCcCeeeeecccc-eEEEecCCceEEcc
Confidence 22578899999999999999887 88999887655433
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=420.25 Aligned_cols=579 Identities=15% Similarity=0.218 Sum_probs=462.4
Q ss_pred EEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
.+.|++||..+++-..+ .|.++|+...+.... .-.+...|.+++.||+|. ++++....|...+-++.....++.
T Consensus 19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence 47899999999987544 599999988654321 225777899999999999 899999999999999888888887
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--------eeeecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
+. ...+|.++.|+| ||.+++.+ ..+.+.||....... ...+.++-..+.++.|+.|.+++++++.
T Consensus 93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr--- 165 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR--- 165 (893)
T ss_pred Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence 75 667899999955 66555554 567899997643322 2356677789999999999999999876
Q ss_pred CceEEEEEecCCcee--eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC---------------------
Q 001367 553 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--------------------- 609 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~--------------------- 609 (1091)
|..+++|++...+- ...+.+|. ..|..+.|..+...+++.+.||.+.+|....
T Consensus 166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 67799999887665 55566776 8999999999999999999999999997761
Q ss_pred --Cee---------EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccc
Q 001367 610 --VQL---------LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1091)
Q Consensus 610 --~~~---------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1091)
++. ....-.......+.+.+|++..+.|+++-..|.+.+|++..-..+..+.....+|..++++..|..
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDW 321 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDW 321 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCE
Confidence 110 011111112246889999999999999999999999999999999999998899999999655554
Q ss_pred ccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEE
Q 001367 679 TGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 758 (1091)
Q Consensus 679 ~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~ 758 (1091)
+++|+. .-|.+-+|+.. ...+.+..++|...+.+++++|||+++++++.||.|+
T Consensus 322 iA~g~~--------------------klgQLlVweWq------sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 322 IAFGCS--------------------KLGQLLVWEWQ------SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred EEEcCC--------------------ccceEEEEEee------ccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 444332 22678889865 3455667778999999999999999999999999999
Q ss_pred EeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEE
Q 001367 759 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 837 (1091)
Q Consensus 759 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~ 837 (1091)
||| ..+|.|+.++.- |...|+.+.|+..|+.+++.+ ||+|+.||+...+..++
T Consensus 376 vWn----------------------~~SgfC~vTFte----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 376 VWN----------------------TQSGFCFVTFTE----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred EEe----------------------ccCceEEEEecc----CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 887 466777877653 999999999999999999999 99999999999999999
Q ss_pred ecCCCC-CeEEEEEcCCCCcEEEEEeCCC-eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 838 IMPPSP-TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 838 ~~~~~~-~i~~l~~s~~~~~~la~g~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
+..+.. ...|++..| .|.++..|+.|. .|++|++++|+.+..+.||.++|.+++|+|+|..|||+|.|.+|++||+-
T Consensus 430 ft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 430 FTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred ecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 987654 568899999 888999999887 89999999999999999999999999999999999999999999999997
Q ss_pred CCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeee------cC-------------
Q 001367 916 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWF------PI------------- 975 (1091)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~------~~------------- 975 (1091)
..... ...++.. . .+..++|+|||+.||+ .-||+|.+||...+.....+- .+
T Consensus 509 ~s~~~-vEtl~i~---s----dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 509 SSSGT-VETLEIR---S----DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred ccCce-eeeEeec---c----ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 64211 1222222 1 4889999999999999 689999999998766553211 11
Q ss_pred CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccc-----------------------------------
Q 001367 976 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY----------------------------------- 1020 (1091)
Q Consensus 976 h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~----------------------------------- 1020 (1091)
.....+.+++|+||.++++|+....|.+|+++++.+++++.....
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i 660 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRI 660 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccc
Confidence 146789999999999999999999999999999998887763221
Q ss_pred ---cCCCC----c----ccccceeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 1021 ---LRPTT----S----CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1021 ---~~~~~----~----~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
+|... . .-.|....+.|+|. |+.++++++.|- .+|.+
T Consensus 661 ~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEGl-~IYsl 708 (893)
T KOG0291|consen 661 DIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEGL-LIYSL 708 (893)
T ss_pred cccCCccccCCccccccCceEEEEEEEECCC-cCeeeeecccce-EEEec
Confidence 11100 0 11466678999995 888999988884 34443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=404.33 Aligned_cols=541 Identities=12% Similarity=0.199 Sum_probs=433.5
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
...+.+|...++-..|||.|- ++|+|...|+|+|||....+.+....|+ .-.++|..++|++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence 456789999999999999996 7899999999999999876655543332 3457999999999
Q ss_pred CCCEEEEEECC--CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 407 DGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 407 dg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
|+++|++.++. +..+++-+++|..+. ++.||...|+++.|-|.-.. .++||++|++|.+|+-.--+...+++.|
T Consensus 114 ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH 189 (603)
T ss_pred CCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence 99999887643 233444444554444 68899999999999987665 8999999999999986666667788899
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec---CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
...|+++.|+ |||.++++++.||.+.+||=.+++....+. .|.+.|.+++|+||++.+++++. +.++++||
T Consensus 190 skFV~~VRys--PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWd 263 (603)
T KOG0318|consen 190 SKFVNCVRYS--PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWD 263 (603)
T ss_pred ccceeeEEEC--CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEE
Confidence 9999999995 578999999999999999999999888887 78899999999999999999987 56699999
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
+.+.++++++.....-......+.|. +..|++.+.+|+|.+++...+..+..+.+|.. .|++++.++++++|++|+
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGS 339 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeec
Confidence 99999999987654222333344454 67899999999999999999998888887755 799999999999999999
Q ss_pred CCCeEEEEECCCCCeeccc-ccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCc
Q 001367 642 NENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPS 720 (1091)
Q Consensus 642 ~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~ 720 (1091)
.||.|.-|+..++..-+.. .+|...|.+++.. +...+++.+.|.++++.++....-.
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~----------------------~~~~~~t~g~Dd~l~~~~~~~~~~t 397 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS----------------------ESGELFTIGWDDTLRVISLKDNGYT 397 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeec----------------------CCCcEEEEecCCeEEEEecccCccc
Confidence 9999999999988766554 6788888887753 2355778888999998876533322
Q ss_pred ccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCC
Q 001367 721 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 800 (1091)
Q Consensus 721 ~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1091)
....+.+. .....++..+++..++....++.+.+-+... +... .-
T Consensus 398 ~~~~~~lg-----~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~-----~~ 442 (603)
T KOG0318|consen 398 KSEVVKLG-----SQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI-----PI 442 (603)
T ss_pred ccceeecC-----CCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----cc
Confidence 22222222 2334888888887666666665555433211 1111 13
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeE--EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce
Q 001367 801 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 877 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~ 877 (1091)
.....++|++|+++.+|+|+ |+.|+||.+..+... ..+..|.++|++++||| |+.+||+|...+.+.+||+.+.+.
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred ccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCce
Confidence 45678999999999999998 799999999876543 34556999999999999 999999999999999999999876
Q ss_pred ee-eeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecC
Q 001367 878 IS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 956 (1091)
Q Consensus 878 ~~-~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~ 956 (1091)
.. .+.-|+.+|.+++|||+.+++||||-|-.|.||+++... ..+.....|.. .|..+.|-.+...+-+|.|-
T Consensus 522 ~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~----~~i~iknAH~~---gVn~v~wlde~tvvSsG~Da 594 (603)
T KOG0318|consen 522 KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA----KHIIIKNAHLG---GVNSVAWLDESTVVSSGQDA 594 (603)
T ss_pred ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh----hheEecccccc---CceeEEEecCceEEeccCcc
Confidence 43 344599999999999999999999999999999998743 22555556665 69999999888887789999
Q ss_pred eEEEEEcC
Q 001367 957 HLAIYEAE 964 (1091)
Q Consensus 957 ~i~vwd~~ 964 (1091)
.|++|.+.
T Consensus 595 ~iK~W~v~ 602 (603)
T KOG0318|consen 595 NIKVWNVT 602 (603)
T ss_pred eeEEeccc
Confidence 99999864
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-49 Score=416.08 Aligned_cols=569 Identities=16% Similarity=0.196 Sum_probs=446.2
Q ss_pred cCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEE
Q 001367 343 HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 422 (1091)
Q Consensus 343 spdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~i 422 (1091)
+..|+++.+ +.-..|.+||+.+|+...... .......|+|+.-+||.-.||+|..||.|+|
T Consensus 31 ~~~Gr~va~--~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVGYaDGsVqi 91 (888)
T KOG0306|consen 31 SGKGRAVAV--SALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVGYADGSVQI 91 (888)
T ss_pred cCCCcEEEE--eccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEEecCceEEe
Confidence 456885433 334789999999996554211 2234468999999999999999999999999
Q ss_pred EEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEE
Q 001367 423 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502 (1091)
Q Consensus 423 wd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 502 (1091)
|+..++... .++.||...|+.+.|...|. .|++||.|+.|.+||+-...-+..+.||...|+..-|. .+..++
T Consensus 92 f~~~s~~~~---~tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~--~~~~~l 164 (888)
T KOG0306|consen 92 FSLESEEIL---ITFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL--NGDSFL 164 (888)
T ss_pred eccCCCcee---eeecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc--CCCeEE
Confidence 999987433 37889999999999999999 89999999999999999888899999999999988874 345799
Q ss_pred EEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc------------eeeEE
Q 001367 503 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG------------AIKRT 570 (1091)
Q Consensus 503 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~------------~~~~~ 570 (1091)
++.+.|+.|++||+++..+..+...|...+.++++.+ +.+++++. ++.+.+|++... +....
T Consensus 165 vS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~ 238 (888)
T KOG0306|consen 165 VSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGT 238 (888)
T ss_pred EEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeeccce
Confidence 9999999999999999999999999999999999988 66777665 445999988211 01111
Q ss_pred EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEE-------------EE--eC-----------------
Q 001367 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT-------------TI--DA----------------- 618 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~-------------~~--~~----------------- 618 (1091)
+... ..+....+...++++++++-+.|..+.++.+.+.+.+. .. ..
T Consensus 239 ~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ 316 (888)
T KOG0306|consen 239 FIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET 316 (888)
T ss_pred eeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh
Confidence 2211 13445556677888899999999999999876532110 00 00
Q ss_pred CCCCCCCceEEEccCCC--EEEEEECCCeEEEEECCCCCee---------cccccccccceeeeeccccccccccccCCc
Q 001367 619 GGGLPENPRICFNKNGT--LLAVIANENRIKILETPESNSV---------DAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~ 687 (1091)
-.....+.++.+-|.++ ..++.-.++++.+|.++..... ..+.+|...|.++++
T Consensus 317 ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v--------------- 381 (888)
T KOG0306|consen 317 IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV--------------- 381 (888)
T ss_pred eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe---------------
Confidence 00012345666666442 2223366788888888763222 345688888998888
Q ss_pred ccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccc
Q 001367 688 VSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 767 (1091)
Q Consensus 688 ~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~ 767 (1091)
+.+...+++++. +++++|+..+. +|.... ..+.+.+..|.|.+++++.|..+|.+.+||+.....
T Consensus 382 ------S~d~~~~~Sga~-~SikiWn~~t~---kciRTi-----~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 382 ------SSDSILLASGAG-ESIKIWNRDTL---KCIRTI-----TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred ------ecCceeeeecCC-CcEEEEEccCc---ceeEEe-----ccccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 555566666655 89999998733 222221 345788999999999999999999999999765422
Q ss_pred ccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccC-----ceeE------
Q 001367 768 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT-----FKTI------ 835 (1091)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~-----~~~~------ 835 (1091)
+-+. ..|.+.+..++.+||++.+++++ |.+|++||..- |...
T Consensus 447 ----------------------~Eti----~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 447 ----------------------VETI----RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred ----------------------hhhh----hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 1111 14999999999999999999998 89999999752 2111
Q ss_pred --EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 836 --LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 836 --~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
+++ .-...|.|+.+|| |+++||++--|.+|+||-+++-+..-.+.||.-||.|+..|||+++++|||.|+.|++|-
T Consensus 501 ~~rtL-el~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 501 HTRTL-ELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred cceEE-eccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 122 2456899999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEE
Q 001367 914 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 992 (1091)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l 992 (1091)
++-|. |.+.+-+|.. .|.++.|-|+...+.+ |.|+.|+-||....++++. +.+|...|++++.+|+|.++
T Consensus 579 LdFGD-----CHKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-L~~H~~ev~cLav~~~G~~v 649 (888)
T KOG0306|consen 579 LDFGD-----CHKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-LDGHHSEVWCLAVSPNGSFV 649 (888)
T ss_pred cccch-----hhhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhhhhhee-eccchheeeeeEEcCCCCeE
Confidence 99866 5666777776 8999999998887777 7999999999999999988 67899999999999999999
Q ss_pred EEEEcCCcEEEEeCCCCceE
Q 001367 993 FTSFVDGTLSIHEASNLEVQ 1012 (1091)
Q Consensus 993 ~t~~~dg~v~iwd~~~~~~~ 1012 (1091)
++++.|.+|++|.......+
T Consensus 650 vs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 650 VSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred EeccCCceeEeeeccCccee
Confidence 99999999999997764443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=413.71 Aligned_cols=503 Identities=15% Similarity=0.232 Sum_probs=398.8
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
.+|+|++-+||.- +||+|-.||.|+||+..++..+.+ +.||..+|+++.|...|.+||+|
T Consensus 66 ~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaSG 125 (888)
T KOG0306|consen 66 AEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLASG 125 (888)
T ss_pred ceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEeec
Confidence 5899999999986 789999999999999998866544 88999999999999999999999
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
|.|+.|.+||+-...-+. .+.||...|+.+-|..+.+ ++++.+.|+.|++||+++..|..+...|.+.++.+++.
T Consensus 126 skDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~ 200 (888)
T KOG0306|consen 126 SKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLD 200 (888)
T ss_pred CCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEEe
Confidence 999999999998754333 6889999999999998777 89999999999999999999999999999999999995
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCce------------e-eecCCCCcEEEEEEcCCCCEEEEEecCC----------
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGAR------------V-DYDAPGLGCTRMAYSANGRRLFSCGTSK---------- 551 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~---------- 551 (1091)
+ ..+++++.|+.+++|++...... . ......+....+...++++++++-+.++
T Consensus 201 ~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~ 276 (888)
T KOG0306|consen 201 E----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSK 276 (888)
T ss_pred c----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCH
Confidence 4 58999999999999998210000 0 0011111222233333333333322211
Q ss_pred ----------------------------------------------------------------CCceEEEEEecCC-ce
Q 001367 552 ----------------------------------------------------------------EGESFLVEWNESE-GA 566 (1091)
Q Consensus 552 ----------------------------------------------------------------~~~~~i~iwd~~~-~~ 566 (1091)
-.++.+..|.+.. +.
T Consensus 277 ~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~ 356 (888)
T KOG0306|consen 277 EEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGK 356 (888)
T ss_pred HHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCC
Confidence 0023344444433 11
Q ss_pred e--------eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 567 I--------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 567 ~--------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
. ...+.+|. ..|.+++++.+...+++| ..+.+.+|+..+.+++.++... .+.+..|-|.+++++
T Consensus 357 ~~p~~~~~~~i~~~GHR---~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~Iv 428 (888)
T KOG0306|consen 357 TSPEADRTSNIEIGGHR---SDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYIV 428 (888)
T ss_pred CCccccccceeeeccch---hheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecCCCceEE
Confidence 1 12344555 899999999876555554 5678999999999999999765 478899999999999
Q ss_pred EEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccC
Q 001367 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFAR 718 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~ 718 (1091)
+|...|.+.+||+.+...+..++.|.+.++.++. +||++.+++++.|.+|++|++....
T Consensus 429 ~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~---------------------~pD~~g~vT~saDktVkfWdf~l~~ 487 (888)
T KOG0306|consen 429 LGTKNGELQVFDLASASLVETIRAHDGAIWSISL---------------------SPDNKGFVTGSADKTVKFWDFKLVV 487 (888)
T ss_pred EeccCCceEEEEeehhhhhhhhhccccceeeeee---------------------cCCCCceEEecCCcEEEEEeEEEEe
Confidence 9999999999999998888888888777777766 6666777777777777777754100
Q ss_pred CcccceeecCCccccccEEEEEEecC-CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCC
Q 001367 719 PSECQSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 797 (1091)
Q Consensus 719 ~~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1091)
. -|. .+.++..-.. .+.
T Consensus 488 ~----------------------~~gt~~k~lsl~~~------------------------------------rtL---- 505 (888)
T KOG0306|consen 488 S----------------------VPGTQKKVLSLKHT------------------------------------RTL---- 505 (888)
T ss_pred c----------------------cCcccceeeeeccc------------------------------------eEE----
Confidence 0 000 0000111000 111
Q ss_pred CCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc
Q 001367 798 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 876 (1091)
Q Consensus 798 ~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~ 876 (1091)
.-...|.|+.+||||++||++- |++|++|-+.+.+..-.+.+|.-+|.|+.+|| |++++++|+.|.+|++|-++-|.
T Consensus 506 -el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 506 -ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGD 583 (888)
T ss_pred -eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccch
Confidence 1467899999999999999997 99999999999999999999999999999999 99999999999999999999999
Q ss_pred eeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-Eec
Q 001367 877 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE 955 (1091)
Q Consensus 877 ~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d 955 (1091)
|...+-+|.+.|.++.|-|+..++.|+|.|+.|+-||-+. ...++.+.+|.. .|++++.+|+|.++++ ++|
T Consensus 584 CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 584 CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-----hhhheeeccchh---eeeeeEEcCCCCeEEeccCC
Confidence 9999999999999999999999999999999999999887 557888999987 8999999999999999 688
Q ss_pred CeEEEEEcCCcc
Q 001367 956 THLAIYEAEELT 967 (1091)
Q Consensus 956 ~~i~vwd~~~~~ 967 (1091)
..|++|......
T Consensus 656 ~sIRlwE~tde~ 667 (888)
T KOG0306|consen 656 KSIRLWERTDEI 667 (888)
T ss_pred ceeEeeeccCcc
Confidence 999999976543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=396.43 Aligned_cols=333 Identities=20% Similarity=0.318 Sum_probs=304.3
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
..|...+.||.++|.|++|||+|+ .||+|+.|.++++||+.+....++ .++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence 467788999999999999999998 569999999999999999887765 889999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC-----CCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-----d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||.|+|||+..+.++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987654 6889999999999965 556 7999999999999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEc-----------CCCC-----
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANGR----- 542 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-----------~d~~----- 542 (1091)
..+.+|+.+|+|++|- ++ .++++++.|++|++|+...+.....+.+|.+.|+.++.+ |.++
T Consensus 241 ~~lsgHT~~VTCvrwG--G~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWG--GE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEc--CC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 9999999999999983 23 499999999999999999988999999999999998877 2233
Q ss_pred --------------------EEEEEecCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCe
Q 001367 543 --------------------RLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1091)
Q Consensus 543 --------------------~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~ 601 (1091)
.|++++. +.++.+|+.... +++....+|+ ..|+.+.|+||++++++++.|..
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence 4888875 677999997644 5788888888 89999999999999999999999
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccc
Q 001367 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1091)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (1091)
|++|+..+|+.+..+.+|-. .|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.+
T Consensus 391 VkLW~g~tGk~lasfRGHv~--~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDw--------- 459 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGHVA--AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDW--------- 459 (480)
T ss_pred eeeeeCCCcchhhhhhhccc--eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEe---------
Confidence 99999999999999987744 7999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccCCCCCCCCCccccccccccccccc
Q 001367 682 GIANGSVSNEDPKEDVKPEISVEAENKSEVEK 713 (1091)
Q Consensus 682 ~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~ 713 (1091)
+|||+.+++|+.|+.+++|.
T Consensus 460 ------------spDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 460 ------------SPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ------------cCCCceeecCCCceEEEeec
Confidence 89999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=388.77 Aligned_cols=367 Identities=20% Similarity=0.293 Sum_probs=298.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77999999999999999999999999999999999975444 7899999999999999999 899999999999999
Q ss_pred CCCCcee-EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 472 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 472 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
.++|+++ ..+.+|...|++++|.|- -..|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence 9998876 678999999999998553 23466677777765
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
++.++|||+..+.++..+.+|. .+|+|+.|.-+ .++++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 5568999999999999999998 99999999865 4899999999999999999999999999887 7898888
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
+.|- .|=+|..|.+=+ ...... .....+.. ++-+
T Consensus 297 sTdy-~LRtgaf~~t~~--------~~~~~s----e~~~~Al~---rY~~------------------------------ 330 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHTGR--------KPKSFS----EEQKKALE---RYEA------------------------------ 330 (480)
T ss_pred cchh-hhhccccccccc--------cCCChH----HHHHHHHH---HHHH------------------------------
Confidence 7642 222333222111 100000 00000110 0000
Q ss_pred cccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCce
Q 001367 711 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 790 (1091)
Q Consensus 711 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1091)
+.-..+..+++++.|.++.+|+-...+. ++
T Consensus 331 -----------------------------~~~~~~erlVSgsDd~tlflW~p~~~kk---------------------pi 360 (480)
T KOG0271|consen 331 -----------------------------VLKDSGERLVSGSDDFTLFLWNPFKSKK---------------------PI 360 (480)
T ss_pred -----------------------------hhccCcceeEEecCCceEEEeccccccc---------------------ch
Confidence 0001234577777777777776322110 01
Q ss_pred eeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001367 791 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 869 (1091)
Q Consensus 791 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~i 869 (1091)
. .+ .+|..-|+.+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.++++
T Consensus 361 ~--rm--tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 361 T--RM--TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKV 435 (480)
T ss_pred h--hh--hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEE
Confidence 0 11 25999999999999999999999 99999999999999999999999999999999 9999999999999999
Q ss_pred EeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 870 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 870 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
|++.+.++...+.||.+.|.++.|+|||..+++++.|+.+++|.
T Consensus 436 w~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 436 WDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999995
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=365.11 Aligned_cols=624 Identities=14% Similarity=0.147 Sum_probs=414.3
Q ss_pred cEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE-
Q 001367 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1091)
Q Consensus 337 V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 415 (1091)
-..++.+|-.- ++|- -....|.+||+...+.-+ ++..|..+++|+|||++|+|+|+|-
T Consensus 40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence 34566667655 3332 223678999987765443 2666888999999999999999984
Q ss_pred -CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC--CCcEEEEeCCCCceeEEecCCCcceEEEe
Q 001367 416 -SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1091)
Q Consensus 416 -~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 492 (1091)
....++||++..-..+. ++..|...|+|++|+|.++ ++++.+. |-.|.+||++.......- .-...|..++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEE
Confidence 56689999999876444 7889999999999999999 7887765 556788987754333221 2345677888
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCCCceee---ecCCCCcEEEEEEcCCCCEEEEEecCC-CC--------ceEEEEE
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAPGLGCTRMAYSANGRRLFSCGTSK-EG--------ESFLVEW 560 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~s~d~~~l~~~~~~~-~~--------~~~i~iw 560 (1091)
| +++|.|+++.+ ...|++|.++....... +.+...-.-.+ .++.+++....-+ -. .|.+.-
T Consensus 173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~l---r~n~f~avaCg~gicAestfait~qGhLvE- 245 (1080)
T KOG1408|consen 173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNL---RFNEFLAVACGVGICAESTFAITAQGHLVE- 245 (1080)
T ss_pred E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhcccc---ccchhhhhhhcCcccccceEEEecccceee-
Confidence 8 67888888876 46899999887652221 11100000001 1112222111100 00 111111
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC---------------------
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--------------------- 619 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--------------------- 619 (1091)
..+.+++..+.... .....|++.+ .+++++|+.+|.|++|+..+-....+++..
T Consensus 246 -FSsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~ 320 (1080)
T KOG1408|consen 246 -FSSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESS 320 (1080)
T ss_pred -echhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccC
Confidence 11222222211111 1334566665 579999999999999998775544433211
Q ss_pred -CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecc---cccccccceeeeeccccccccccccCCcccCCCCCC
Q 001367 620 -GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA---AGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKE 695 (1091)
Q Consensus 620 -~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 695 (1091)
...+....+.|++....|.+...|..++|||+..-..+.. +-.|...|+.+..-|..-.- ......|
T Consensus 321 ~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~---------~~~aclp 391 (1080)
T KOG1408|consen 321 PAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHS---------PTAACLP 391 (1080)
T ss_pred cccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccC---------cccccCC
Confidence 1123445788999999999999999999999987654433 34577777777655421100 0000022
Q ss_pred CCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceee
Q 001367 696 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 775 (1091)
Q Consensus 696 ~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 775 (1091)
.+ .+++++.|++||+|+++.....+... ... -......+.+. |++..+...
T Consensus 392 ~~-cF~TCSsD~TIRlW~l~~ctnn~vyr--RNi--ls~~l~ki~y~-----------d~~~q~~~d------------- 442 (1080)
T KOG1408|consen 392 RG-CFTTCSSDGTIRLWDLAFCTNNQVYR--RNI--LSANLSKIPYE-----------DSTQQIMHD------------- 442 (1080)
T ss_pred cc-ceeEecCCCcEEEeecccccccceee--ccc--chhhhhcCccc-----------cCchhhhhh-------------
Confidence 22 37899999999999987522211100 000 00011111111 111110000
Q ss_pred ccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCC-
Q 001367 776 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH- 853 (1091)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~- 853 (1091)
...-++|-.... .......+.++++||+|++||+|+ .|.+++|++...+....+..|...|.|+.||..
T Consensus 443 -~~~~~fdka~~s--------~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~ 513 (1080)
T KOG1408|consen 443 -ASAGIFDKALVS--------TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV 513 (1080)
T ss_pred -ccCCcccccchh--------hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch
Confidence 000011111000 012567889999999999999998 599999999999999999999999999999853
Q ss_pred -CCcEEEEEeCCCeEEEEeccC-cceeeeeccccCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeeccC
Q 001367 854 -DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 929 (1091)
Q Consensus 854 -~~~~la~g~~dg~i~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg--~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 929 (1091)
..++||+++.|.-|.|||+.. ..+++++.+|+..|+++.|.-.| ..+++++.|+.|.+--..... .-.....
T Consensus 514 ~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~----~g~~f~r 589 (1080)
T KOG1408|consen 514 LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS----SGRLFPR 589 (1080)
T ss_pred hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc----Cceeccc
Confidence 357999999999999999965 46779999999999999998877 779999999987653332110 0011111
Q ss_pred CC-cCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCC--ccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 930 GV-MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 930 ~~-~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
++ ...-..+..++..|..+++++ +.|..|+|||+.+|+..+.+...| .+....+...|.|-|||+.+.|.++.++|
T Consensus 590 ~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred cccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEE
Confidence 11 111135889999999999998 789999999999999998876554 67778899999999999999999999999
Q ss_pred CCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 1006 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
..+|++++++.. |+..|+ -+.|.+ |=+.|++++.||+|++|.++-
T Consensus 670 f~sgEcvA~m~G--------HsE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 670 FVSGECVAQMTG--------HSEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eccchhhhhhcC--------cchhee--eeeecc-cchhheeecCCceEEEEECch
Confidence 999999988772 444454 356787 468899999999999999764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=352.60 Aligned_cols=509 Identities=15% Similarity=0.186 Sum_probs=379.4
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEc--CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~--~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
+.+..|..+++|+|||++|+ ++|+|- ....++||++.....+.+ +..|+-.|+|++|+
T Consensus 72 hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs 131 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS 131 (1080)
T ss_pred heecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence 45567888999999999998 568886 456799999998887765 67899999999999
Q ss_pred CCCCEEEEEECC--CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE----
Q 001367 406 PDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---- 479 (1091)
Q Consensus 406 pdg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~---- 479 (1091)
|.++|+++.+.. -.|.+||+....... -..-...|..++|+.||. |++|.+ ...|++|.++.++...
T Consensus 132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence 999999987654 467889887543221 123445799999999999 899888 5689999987665210
Q ss_pred ---------Ee------------------------cCC-----------------CcceEEEeecccCCceEEEEEecCC
Q 001367 480 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG 509 (1091)
Q Consensus 480 ---------~~------------------------~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~dg 509 (1091)
.+ .|| +....|++. +.++|++|+.+|
T Consensus 205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g 280 (1080)
T KOG1408|consen 205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG 280 (1080)
T ss_pred ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence 00 000 111223333 346899999999
Q ss_pred eEEEEecCCCCceeeecC--------------------C----CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 510 KIKAWLYDSLGARVDYDA--------------------P----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 510 ~i~iwd~~~~~~~~~~~~--------------------~----~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
.|++++..+.....++.- . -.....+.|++...+|.+... +..+++||++.-
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV 356 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence 999998765433222110 0 012457789998999988875 667999999875
Q ss_pred eeeEEEecccccccceEEEEEcCC-----------CCEEEEEeCCCeEEEEECCCCeeEEEE-------------e----
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI-------------D---- 617 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~-----------~~~l~~~s~dg~i~iwd~~~~~~~~~~-------------~---- 617 (1091)
..+......-.|...|+.+.--|- ...+++++.|++|++||++.+..-..+ .
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~ 436 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST 436 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence 544332222222355665544331 235889999999999999763211100 0
Q ss_pred ------------------CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccc
Q 001367 618 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1091)
Q Consensus 618 ------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1091)
.-+....+.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.|+.|+..
T Consensus 437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p---- 512 (1080)
T KOG1408|consen 437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFP---- 512 (1080)
T ss_pred hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCc----
Confidence 0011235789999999999999999999999999999999999999999999999632
Q ss_pred cccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCC--CeEEEeecCceE
Q 001367 680 GAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGVH 757 (1091)
Q Consensus 680 ~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~dg~i 757 (1091)
.-..++|++++.|.-|.++|+... ..+.....+|...|+++.|...| ..+++++.|..+
T Consensus 513 --------------~~~~kLLASasrdRlIHV~Dv~rn-----y~l~qtld~HSssITsvKFa~~gln~~MiscGADksi 573 (1080)
T KOG1408|consen 513 --------------VLTNKLLASASRDRLIHVYDVKRN-----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI 573 (1080)
T ss_pred --------------hhhhHhhhhccCCceEEEEecccc-----cchhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence 223578999999999999997632 22222335699999999999888 678999998766
Q ss_pred EEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEE
Q 001367 758 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTIL 836 (1091)
Q Consensus 758 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~ 836 (1091)
.+--... ..+|......... -....+..+++.|..+++++++ |..|+||++++++..+
T Consensus 574 mFr~~qk-------------------~~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 574 MFRVNQK-------------------ASSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred heehhcc-------------------ccCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 5422110 0111111110000 1345688999999999999998 8999999999999999
Q ss_pred EecC---CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 837 TIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 837 ~~~~---~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
.|++ |.+....+...| .|.|||+.+.|+++.++|+.+|+++.++.||...|+.+.|++|-+.|++++.||.|.||.
T Consensus 633 ~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 9985 556788899999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 001367 914 VDG 916 (1091)
Q Consensus 914 ~~~ 916 (1091)
+..
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 864
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=340.09 Aligned_cols=606 Identities=14% Similarity=0.149 Sum_probs=425.6
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC---EEEEEEC
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS 416 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~~ 416 (1091)
.+|.|.+ ++|.|. ...|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456666 346654 4889999977653333 2889999999999999888 8999999
Q ss_pred CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc--eeEEecCCCcceE--EEe
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVY--SLC 492 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~--~~~ 492 (1091)
|+.|++|.++. +.+.....+.+|...+.++. .... ...+...|+.+.+||.+..+ ++..+.-..+.+. +++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 33445556777766655554 3222 22223689999999985555 3333332233333 344
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCC--CceeeecCCCCcEEEEEEcCCCC---EEEEEecCCCCceEEEEEecCCce-
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA- 566 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~- 566 (1091)
+.+.++.-.++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++ .|.+|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 445444456677788888888865533 34557889999999999987554 444544 37889999764322
Q ss_pred --------------------eeEE----------EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeEE
Q 001367 567 --------------------IKRT----------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT 614 (1091)
Q Consensus 567 --------------------~~~~----------~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~ 614 (1091)
.... +.||. +.|.++.|+|.+..|++++.|.++.+|...+. -.+.
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~ 305 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD 305 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence 1111 22555 99999999999999999999999999987653 4443
Q ss_pred EEeCC---CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC---CeecccccccccceeeeeccccccccccccCCcc
Q 001367 615 TIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1091)
Q Consensus 615 ~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~ 688 (1091)
..... +.........|+|+++.+++-+..|..++|..... .....+.+|.+.|..++|
T Consensus 306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W---------------- 369 (764)
T KOG1063|consen 306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDW---------------- 369 (764)
T ss_pred EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeee----------------
Confidence 33322 12234678899999999999999999999994433 344567899999999999
Q ss_pred cCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccc-
Q 001367 689 SNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL- 767 (1091)
Q Consensus 689 ~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~- 767 (1091)
.|.|.++++.+.|.+-|+|-.- +....-..+. .++.|...+.++++-+....+++++....+|+|+.+..-.
T Consensus 370 -----~psGeflLsvs~DQTTRlFa~w-g~q~~wHEia-RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~ 442 (764)
T KOG1063|consen 370 -----DPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIA-RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK 442 (764)
T ss_pred -----cCCCCEEEEeccccceeeeccc-ccccceeeec-ccccccccceeeehccCCceeeecccceeeeeecCcHHHHH
Confidence 7888899999999999997754 1222223333 3357999999999999666688888899999999875422
Q ss_pred ---------------ccccceee-----------------------------ccCCccccCCCCCceeeec-----CCCC
Q 001367 768 ---------------TLSTEATT-----------------------------KVPPRLYQPRHGPQFMVND-----TTDS 798 (1091)
Q Consensus 768 ---------------~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~-----~~~~ 798 (1091)
.+.+.... .....+..+....+++... -+..
T Consensus 443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY 522 (764)
T KOG1063|consen 443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY 522 (764)
T ss_pred HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence 00000000 0000011111111111111 1226
Q ss_pred CCCCCeeEEEecCCCCEEEEEeC------CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEec
Q 001367 799 NSQEAVPCFALSKNDAYLFSASG------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~~la~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
||...|.+++.+|+|+++|+++. ..|++|+..+......+.+|.-.|+.++||| |+++|++.+.|.++.+|..
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeee
Confidence 89999999999999999999862 3599999999999999999999999999999 9999999999999999988
Q ss_pred cCcce----eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCC--
Q 001367 873 RSSEV----ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-- 946 (1091)
Q Consensus 873 ~~~~~----~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d-- 946 (1091)
..... ....+.|+.-|.++.|+||++++||+|.|++|++|........ .+... ........|+++++.|-
T Consensus 602 ~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~---~i~~~-a~~~~~~aVTAv~~~~~~~ 677 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDK---YISRF-ACLKFSLAVTAVAYLPVDH 677 (764)
T ss_pred ecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhh---hhhhh-chhccCCceeeEEeecccc
Confidence 65321 2346789999999999999999999999999999999875211 11110 11112236888888762
Q ss_pred --C-CEEEEE-ecCeEEEEEcCCccee-----------eeeecCCccCEEEEEEeeC----------CCEEEEEEcCCcE
Q 001367 947 --Q-TRFLLV-HETHLAIYEAEELTCL-----------KQWFPISSVPISQATFSCD----------CRMVFTSFVDGTL 1001 (1091)
Q Consensus 947 --g-~~la~~-~d~~i~vwd~~~~~~~-----------~~~~~~h~~~v~~v~fs~d----------g~~l~t~~~dg~v 1001 (1091)
. ..+++| ..|.|.+|....-... ..-..+|...|..+.|+|. ...|++|+.|.++
T Consensus 678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~v 757 (764)
T KOG1063|consen 678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESV 757 (764)
T ss_pred ccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeeccccee
Confidence 2 245556 6689999986511100 1112346888999999974 2357999999999
Q ss_pred EEEeCC
Q 001367 1002 SIHEAS 1007 (1091)
Q Consensus 1002 ~iwd~~ 1007 (1091)
+++++.
T Consensus 758 ri~nv~ 763 (764)
T KOG1063|consen 758 RIFNVD 763 (764)
T ss_pred EEeecc
Confidence 999864
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=334.87 Aligned_cols=345 Identities=19% Similarity=0.269 Sum_probs=289.8
Q ss_pred CchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCC--CCceeeeceeEEeccccccceeeeeecCCCccE
Q 001367 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1091)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1091)
+|....+.+. |..+|.+.+|+|-..-++|+|+.|-+.++|++.. ...... .++..|...--+ -...+..|
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q-----~~lrh~~~~~~~--s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ-----LVLRHCIREGGK--SVPSNKDV 238 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh-----hhhhhhhhhhcc--cCCccCCc
Confidence 5666667777 9999999999997765789999999999999874 111110 000111100000 01134689
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|+..+
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999988753 22 6788999999999999999 89999999999999999999999
Q ss_pred EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
.+.-|..+-..+.|-. ...+++.+.||.|+++.+....+..++.+|.++|.++.|.|.|..|++++. |+++++
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999998866677742 247999999999999999999999999999999999999999999999986 778999
Q ss_pred EecCCceeeEEEecccccccceEEEEEcCCC---------CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
|++........+..|. ..|..+.|+|.| ..+++++.|++|++||+..+.++..+..|.. +|++++|
T Consensus 386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEe
Confidence 9999999999999988 899999999975 4688999999999999999999999976654 7999999
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
+|+|+++|+|+.||.|.+|+.++++.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~------------------------------------------------- 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ------------------------------------------------- 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence 9999999999999999999999887665443
Q ss_pred cccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeec
Q 001367 711 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 711 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
..+.|..+.|+.+|..+.++..+|.+.+-|+
T Consensus 492 ---------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ---------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ---------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2345788899999999999999998888765
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=336.43 Aligned_cols=284 Identities=19% Similarity=0.249 Sum_probs=266.6
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC--C
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G 408 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 408 (1091)
.|.+.+|..+.||+|++ ++|||+.+|.++||+..++..+.. |.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 46778999999999998 789999999999999999876654 8899999999999996 6
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
..||+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876655 6889999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
.+++|. +||.++++|+.|..-+|||++++.++..+.+|..+|.++.|+|+|..|++|+. |++++|||++....+
T Consensus 307 ~~iaf~--~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQ--PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEec--CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 999995 57889999999999999999999999999999999999999999999999986 778999999999999
Q ss_pred EEEecccccccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 569 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
..+.+|. +-|+.|.|+| .|.+|++++.|++++||...++.+++.+.+|.. .|.++.+++|+..+++++.|.+++
T Consensus 381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence 9999988 9999999998 678899999999999999999999999998876 699999999999999999999999
Q ss_pred EEE
Q 001367 648 ILE 650 (1091)
Q Consensus 648 iwd 650 (1091)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=332.12 Aligned_cols=581 Identities=15% Similarity=0.145 Sum_probs=431.5
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCE
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1091)
..|..-|..++++.+.+.+..+||.+.-..+.. -..+...|+|++=..+--|.|++ ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCceEEEecC---cE
Confidence 556666666778888999999999988776653 23467889998876554444443 23
Q ss_pred EEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-cee----EEecCCCcceEEEeec
Q 001367 420 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~----~~~~~~~~~v~~~~~~ 494 (1091)
|.+|. .|+.++. .+.+|.+.|.-+.- -|. .++++..++.+.||+..++ +.+ .-++.....|+++. +
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 55554 3433333 45577777776643 466 6889999999999998874 221 11222223377664 4
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecc
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1091)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|.|.+++++.++.+..|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 4433357899999999999999999999999999999999999998888888876 677999999999999999876
Q ss_pred cccccceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeEEEEe-CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 575 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 575 ~~~~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
. +.|++++|..||+.+++ |+..|.+.+||++..+.+..+. .|. ..+....|.|....+++++.|+.+++|-.+
T Consensus 244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~--~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY--GSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc--CCcccceecCCCceEeeccCCCceeEEEee
Confidence 5 79999999999987655 6677999999999998887776 342 368899999999999999999998888666
Q ss_pred CC----CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecC
Q 001367 653 ES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 728 (1091)
Q Consensus 653 ~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 728 (1091)
++ +.++...+|..+-.+++|. ...|..+.+++.|++.+.+++......+....
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy--------------------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~--- 375 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFY--------------------GSQGHFILSAKQDRTLRSFSVISESQSQELGQ--- 375 (910)
T ss_pred CCCCcchheeeccCCCCCchheeee--------------------ccCcEEEEecccCcchhhhhhhHHHHhHhhcc---
Confidence 44 5566677899999999885 56788899999999999888643221111100
Q ss_pred CccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001367 729 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 808 (1091)
Q Consensus 729 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 808 (1091)
......++ .+.+.. ...+ .-.+|..++
T Consensus 376 ----------~~~~~~~k---------k~~~~~------------------------------~~~~----k~p~i~~fa 402 (910)
T KOG1539|consen 376 ----------LHNKKRAK---------KVNVFS------------------------------TEKL----KLPPIVEFA 402 (910)
T ss_pred ----------cccccccc---------cccccc------------------------------hhhh----cCCcceeee
Confidence 00000000 000000 0000 112333333
Q ss_pred ecCC----CCEEEEEe--CCeEEEEEccCcee-EEEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc
Q 001367 809 LSKN----DAYLFSAS--GGVISLYIVMTFKT-ILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 876 (1091)
Q Consensus 809 ~s~d----g~~la~~~--dg~i~iwd~~~~~~-~~~~-----~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~ 876 (1091)
+... -.-++++. +...+.|++..... ...+ +.....+++++.++ .|++.+.|...|.|-+|++++|-
T Consensus 403 ~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi 481 (910)
T KOG1539|consen 403 FENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGI 481 (910)
T ss_pred cccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCe
Confidence 3221 11223332 46788898876554 2222 22346899999999 99999999999999999999998
Q ss_pred eeeee---ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-
Q 001367 877 VISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 952 (1091)
Q Consensus 877 ~~~~l---~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~- 952 (1091)
....+ ..|.++|++++...-++.++|++.+|.+++||++.... +...+-. ..+.++..+.....+|+
T Consensus 482 ~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~l~----~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 482 HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLRLG----SSITGIVYHRVSDLLAIA 552 (910)
T ss_pred eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeeccC----CCcceeeeeehhhhhhhh
Confidence 88888 58999999999988889999999999999999998542 2222221 24778888888888888
Q ss_pred EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccce
Q 001367 953 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1032 (1091)
Q Consensus 953 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1032 (1091)
..|-.|+++|+.+.+.++. +.||+..|++++|||||++|++++.|++|++||+.++.++..+... ..+
T Consensus 553 ~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~~ 620 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SPC 620 (910)
T ss_pred cCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------Ccc
Confidence 5677899999999998888 5689999999999999999999999999999999999998766521 124
Q ss_pred eEEEeCCCCCCeEEEEecC-CcEEEEec
Q 001367 1033 HAIAAHPLKPTQFAVGLTN-GEVYVIEP 1059 (1091)
Q Consensus 1033 ~~~~~~p~d~~~l~~g~~d-g~v~~w~~ 1059 (1091)
..+.|+|+ |.+|+|+..| ..|++|.=
T Consensus 621 ~sls~SPn-gD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 621 TSLSFSPN-GDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eeeEECCC-CCEEEEEEecCceEEEEEc
Confidence 57899994 9999999999 68999974
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=329.91 Aligned_cols=285 Identities=17% Similarity=0.257 Sum_probs=266.8
Q ss_pred CCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1091)
|.+.+|..+.||+|++.||||+.+|.++||+..+...+. ++.||...|.++.|+|.....-++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456799999999999999999999999999999875444 78999999999999998422379999999999999999
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
+..++..+.+|...|..++|+| +|++|++++.|.+-++||++++.......+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999966 6689999999999999999999999999999999999999999999999987
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc-
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 632 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 632 (1091)
|..-++||+++|.++..+.+|. ..|.+|+|+|+|..+++||.|++++|||++..+.+.+++.|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 6678999999999999999988 9999999999999999999999999999999999999988866 689999998
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
.|.+|++++.|+++++|...+..+++.+.+|.+.|.++++ ++|++.+++++.|.++++|
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di---------------------s~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI---------------------SPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEe---------------------ccCCceEEEeccCceeeec
Confidence 7899999999999999999999999999999999999998 8899999999999999999
Q ss_pred c
Q 001367 713 K 713 (1091)
Q Consensus 713 ~ 713 (1091)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 6
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=301.19 Aligned_cols=295 Identities=17% Similarity=0.250 Sum_probs=268.6
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
...++|+||.+.|.++.|++|.+ .+++++.||.+.|||.-|...++. ++-....|..+||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~ 105 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAY 105 (343)
T ss_pred eeEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEE
Confidence 45589999999999999999998 569999999999999988877654 3446789999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCc---ccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1091)
+|.|+++|+|+-|+...||++.+.+ ..+...++.+|.+.+.++.|.+|+. |+|++.|.+..+||+++|+.+..|
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEe
Confidence 9999999999999999999998652 2344457889999999999999876 999999999999999999999999
Q ss_pred cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
.+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.+++|.|+|.-+++|+. ++..++||
T Consensus 183 ~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyD 257 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYD 257 (343)
T ss_pred cCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEe
Confidence 999999999999875 7789999999999999999999999999999999999999999999999986 77899999
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
++..+.+..+.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|+. .|.++..+|||.-+++|+
T Consensus 258 lRaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 258 LRADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGS 334 (343)
T ss_pred ecCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecc
Confidence 99999888887433 457899999999999999999999999999999999999998876 799999999999999999
Q ss_pred CCCeEEEEE
Q 001367 642 NENRIKILE 650 (1091)
Q Consensus 642 ~dg~i~iwd 650 (1091)
.|..++||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=301.20 Aligned_cols=298 Identities=20% Similarity=0.283 Sum_probs=256.0
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
+.-+|.+|+++|+.++..+.+..++.+++.|.++.+|++.......- .....+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEc
Confidence 45689999999999999999888999999999999999876532221 1122388999999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC-
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH- 484 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~- 484 (1091)
+||++.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ .+++|+.|.+|++||.. |.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence 999999999999999999999996554 6889999999999999999 69999999999999965 4555555443
Q ss_pred -CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 485 -~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
.+.|.+++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++++. ++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence 78999999999988899999999999999999999999999999999999999999999999875 6779999999
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-------CCCCceEEEccCCCE
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL 636 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~ 636 (1091)
.++.+..+... ..|.+++|+|+..+|+.+. +..|+|||++++..+..+..... .+...+++|++||..
T Consensus 223 ~~k~lysl~a~----~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 223 EGKNLYSLEAF----DIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred CCceeEeccCC----CeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence 99998887764 5899999999876655554 45599999999988877754322 233567899999999
Q ss_pred EEEEECCCeEEEEECC
Q 001367 637 LAVIANENRIKILETP 652 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~ 652 (1091)
|+.|..|+.|++|.+.
T Consensus 298 Lf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 298 LFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeeecCCcEEEEEee
Confidence 9999999999999864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=323.85 Aligned_cols=480 Identities=18% Similarity=0.290 Sum_probs=357.6
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
.+++..|++.|.++.|+|....+ .++-..|.|.|||.++...++. +.-...+|.+..|-+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~-la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfia 65 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWI-LAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIA 65 (794)
T ss_pred hhHhhccCCceeeeecCCCCceE-EEeeecCeeEEEecccceeeee-------------------eeecccchhhheeee
Confidence 35567799999999999999854 5667789999999999998875 333567999999999
Q ss_pred CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecCCC
Q 001367 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHG 485 (1091)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~ 485 (1091)
--+++++|+.|..|+||+..+++.++ .+..|.+.|.+++.+|... +++|+|.|-+|++||.+.+ .+.++|.||.
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 99999999999999999999987665 7899999999999999888 8999999999999999865 7789999999
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCC--CEEEEEecCCCCceEEEEEecC
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
.-|.+++|.|. |...+++++.|++|++|.+.+..+.+++.+|...|.++.+-+-| .+|++++. +..+.+||.+
T Consensus 141 HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQ 215 (794)
T KOG0276|consen 141 HYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQ 215 (794)
T ss_pred eEEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecc
Confidence 99999999986 55799999999999999999999999999999999999998755 58888875 7789999999
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1091)
+..+++++.||. ..|..++|+|.-..+++|++||+++||+..+.++..++..... .+.+++-.+.++.+++|.++
T Consensus 216 tk~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 216 TKSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred hHHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccC
Confidence 999999999999 8999999999999999999999999999999998888776544 68999999988999999998
Q ss_pred CeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcc-cccccccccccccccccCCccc
Q 001367 644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPE-ISVEAENKSEVEKPLFARPSEC 722 (1091)
Q Consensus 644 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l-~s~~~d~~i~~w~~~~~~~~~~ 722 (1091)
|.|.+ .+....+...+.... .+-|+..+.+.++... .+....--.||..+ ++.-.-|++
T Consensus 291 g~i~v-~lgreeP~vsMd~~g----KIiwa~~~ei~~~~~k--s~~~~~ev~DgErL~LsvKeLgs~------------- 350 (794)
T KOG0276|consen 291 GSVTV-KLGREEPAVSMDSNG----KIIWAVHSEIQAVNLK--SVGAQKEVTDGERLPLSVKELGSV------------- 350 (794)
T ss_pred CcEEE-EccCCCCceeecCCc----cEEEEcCceeeeeece--eccCcccccCCccccchhhhcccc-------------
Confidence 87765 333332222221111 1112111111110000 00000001111111 111111111
Q ss_pred ceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCC
Q 001367 723 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 802 (1091)
Q Consensus 723 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1091)
.-....++.+|+|+ +++.+.||...||.-- -|.- ..-+
T Consensus 351 ----------eiyPq~L~hsPNGr-fV~VcgdGEyiIyTal-----------------a~Rn--------------K~fG 388 (794)
T KOG0276|consen 351 ----------EIYPQTLAHSPNGR-FVVVCGDGEYIIYTAL-----------------ALRN--------------KAFG 388 (794)
T ss_pred ----------ccchHHhccCCCCc-EEEEecCccEEEEEee-----------------ehhh--------------cccc
Confidence 11234678899999 5555667787776410 0110 1345
Q ss_pred CeeEEEecCCCCEEEEE-eCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee
Q 001367 803 AVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l 881 (1091)
.-..++|++|....|+- +++.|+++ +.++..+.+..... +-.+. +|.+|.+.+ ++.+++||..+++.++++
T Consensus 389 ~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~---~e~i~--gg~Llg~~s-s~~~~fydW~~~~lVrrI 460 (794)
T KOG0276|consen 389 SGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS---AEGIF--GGPLLGVRS-SDFLCFYDWESGELVRRI 460 (794)
T ss_pred cceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc---eeeec--CCceEEEEe-CCeEEEEEcccceEEEEE
Confidence 56778899995555555 57889988 66777666653322 22222 566777665 557999999999999888
Q ss_pred ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 882 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 882 ~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
.-. ...+.|+.+|.+++.++.|. .++..+.
T Consensus 461 ~v~---~k~v~w~d~g~lVai~~d~S-fyil~~n 490 (794)
T KOG0276|consen 461 EVT---SKHVYWSDNGELVAIAGDDS-FYILKFN 490 (794)
T ss_pred eec---cceeEEecCCCEEEEEecCc-eeEEEec
Confidence 643 34588999999988887665 4555443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=315.02 Aligned_cols=558 Identities=13% Similarity=0.190 Sum_probs=412.2
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 410 (1091)
..+.+.|+|++=+.+-- ++|.| ..|.+|. .|+.+. .+..+|...|.-+. |=|.+
T Consensus 73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~------------------~~~~~~~a~v~~l~--~fGe~ 126 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIR------------------HTTLLHGAKVHLLL--PFGEH 126 (910)
T ss_pred CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEE------------------EEeccccceEEEEe--eecce
Confidence 46778999998877653 44443 4455554 444332 12556777776654 45889
Q ss_pred EEEEECCCEEEEEEeeCC-cccceeEEEe-ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 411 LGVAYSKHIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~-~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
++++..++.+.||+..++ +.......+. ...+.|+++. +|..--..++.|+.+|.+.+|++++++.+++++++...|
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I 205 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI 205 (910)
T ss_pred EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence 999999999999999985 2211111222 2222366654 554322258889999999999999999999999999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
+++.-+|. -..++.|..+|+|.++++...+.+..++...++|++++|..||..+.+.+. ..|.+.+||++..+.+
T Consensus 206 T~ieqsPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 206 TAIEQSPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLI 280 (910)
T ss_pred eEeccCCc--ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeee
Confidence 99876544 458999999999999999999999999988899999999999998877664 2567999999998887
Q ss_pred EEEe-cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC--C--eeEEEEeCCCCCCCCceEEEc-cCCCEEEEEEC
Q 001367 569 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V--QLLTTIDAGGGLPENPRICFN-KNGTLLAVIAN 642 (1091)
Q Consensus 569 ~~~~-~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~--~--~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~ 642 (1091)
.... .|. +.+....|.|....+++++.|+.+++|=.++ | +.++.-.+| ..+..++.|. .+|..+.+++.
T Consensus 281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH--s~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGH--SAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCC--CCCchheeeeccCcEEEEeccc
Confidence 7776 444 7889999999999999999999988885554 3 233333344 3466788887 68899999999
Q ss_pred CCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCccc
Q 001367 643 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 722 (1091)
Q Consensus 643 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~ 722 (1091)
|++++.+++.....-+.+..... .... +.+.+....
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~----------------------------~~~~---------kk~~~~~~~------- 391 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHN----------------------------KKRA---------KKVNVFSTE------- 391 (910)
T ss_pred CcchhhhhhhHHHHhHhhccccc----------------------------cccc---------ccccccchh-------
Confidence 99999888764322222111000 0000 011111100
Q ss_pred ceeecCCccccccEEEEEEecCC----CeEEEee-cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCC
Q 001367 723 QSLLLPSKVKANKISRLTYNNGG----QAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 797 (1091)
Q Consensus 723 ~~~~~~~~~~~~~i~~~~~s~dg----~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1091)
...-.+|..+++...- ..++++. .+...+.|++..... |+..... -+.
T Consensus 392 -------~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~-------------------G~~~L~~-~~~ 444 (910)
T KOG1539|consen 392 -------KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS-------------------GRHVLDP-KRF 444 (910)
T ss_pred -------hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc-------------------ccEEecC-ccc
Confidence 0012234444443321 1234443 456778888764321 1111110 001
Q ss_pred CCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEe---cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEecc
Q 001367 798 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 873 (1091)
Q Consensus 798 ~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~ 873 (1091)
......++++++++.|++.+.|. .|.|.+|++++|-....+ ..|..+|+.++... -++.+++++.+|-+.+||..
T Consensus 445 ~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 445 KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred cccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecC
Confidence 12457889999999999999997 699999999999998888 57999999999988 78899999999999999999
Q ss_pred CcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-
Q 001367 874 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 952 (1091)
Q Consensus 874 ~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~- 952 (1091)
+...+..+. -...++++..+.....+|.+..|-.|+++|..+ .+..+.+.||.. .|++++|||||++|++
T Consensus 524 ~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t-----~kvvR~f~gh~n---ritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 524 KKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT-----RKVVREFWGHGN---RITDMTFSPDGRWLISA 594 (910)
T ss_pred Ccceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchh-----hhhhHHhhcccc---ceeeeEeCCCCcEEEEe
Confidence 888777776 345588888888888999999999999999998 457778888887 9999999999999999
Q ss_pred EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-CcEEEEeCCC
Q 001367 953 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASN 1008 (1091)
Q Consensus 953 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-g~v~iwd~~~ 1008 (1091)
+.|++|++||+.++.++-.+.. ..+.+++.|||+|.+|||+..| .-|++|.-.+
T Consensus 595 smD~tIr~wDlpt~~lID~~~v--d~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLLV--DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred ecCCcEEEEeccCcceeeeEec--CCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 6899999999999999987654 6789999999999999999998 5699996443
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=292.30 Aligned_cols=287 Identities=15% Similarity=0.171 Sum_probs=266.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
+++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ ++++|+.|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 488999999999999999999999999999999998875433 4566778899999999999 89999999999999
Q ss_pred eCCCC------ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC-CCCE
Q 001367 471 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 543 (1091)
Q Consensus 471 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~ 543 (1091)
++.+. ...+.+.+|.+-+.++.|.. ...|++++.|.+..+||++++.....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 34577899999999999854 35899999999999999999999999999999999999999 9999
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
+++++. +...++||++.+..++.|.+|. ..|++++|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 999987 6679999999999999999999 999999999999999999999999999999999999998877778
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
.|++++||..|++|.+|..|.++.+||.-.++.+..+.+|...|.++.. +|||..+++|
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~---------------------s~DG~av~Tg 333 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV---------------------SPDGMAVATG 333 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE---------------------CCCCcEEEec
Confidence 8999999999999999999999999999999999999999999999998 8889999999
Q ss_pred cccccccccc
Q 001367 704 EAENKSEVEK 713 (1091)
Q Consensus 704 ~~d~~i~~w~ 713 (1091)
+.|.++|+|.
T Consensus 334 SWDs~lriW~ 343 (343)
T KOG0286|consen 334 SWDSTLRIWA 343 (343)
T ss_pred chhHheeecC
Confidence 9999999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=283.16 Aligned_cols=293 Identities=16% Similarity=0.268 Sum_probs=251.9
Q ss_pred CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEE
Q 001367 345 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 424 (1091)
Q Consensus 345 dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd 424 (1091)
|..-|||+++.|.+|++|...+|.+.++ +....+.|..+.+.||+++||+++... |++||
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD 67 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYD 67 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEE
Confidence 3446899999999999999999999876 444678999999999999999997665 99999
Q ss_pred eeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEE
Q 001367 425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS 504 (1091)
Q Consensus 425 ~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 504 (1091)
+.++..- ...++.+|.+.|+++.|..||+ .++|||+||+++|||++...+.+.++ |..+|+++.++|+ ...|++
T Consensus 68 ~~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn--QteLis 141 (311)
T KOG0315|consen 68 LNSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN--QTELIS 141 (311)
T ss_pred ccCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC--cceEEe
Confidence 9998753 5568999999999999999999 89999999999999999977777665 7799999999764 468999
Q ss_pred EecCCeEEEEecCCCCceeee-cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce------eeEEEeccccc
Q 001367 505 ISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQ 577 (1091)
Q Consensus 505 ~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~ 577 (1091)
+..+|.|++||+........+ ......|.++...|||.+++++.. .|..++|++-+.. ++.+++.|.
T Consensus 142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~-- 215 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN-- 215 (311)
T ss_pred ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc--
Confidence 999999999999987665544 344568999999999999998865 6779999987643 455566666
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCe
Q 001367 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 578 ~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
..+..+.++||+++|+++|.|.+++||+.++. +....+.++ ...+..++||.||.+|++++.|+.+++|++..++.
T Consensus 216 -~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 216 -GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred -ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence 88999999999999999999999999999988 444445444 45799999999999999999999999999999999
Q ss_pred ecccccccccceeeee
Q 001367 657 VDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 657 ~~~~~~~~~~v~~~~~ 672 (1091)
+....+|.....|++.
T Consensus 293 v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 293 VRQYQGHHKAAVCVAL 308 (311)
T ss_pred eeecCCcccccEEEEe
Confidence 9999999988877765
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=313.22 Aligned_cols=598 Identities=14% Similarity=0.177 Sum_probs=407.0
Q ss_pred EEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCc-eEEEEeeCCCcEEEEeCCCC--cee
Q 001367 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVWDAVTG--SRT 478 (1091)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-~~l~s~~~d~~i~iwd~~~~--~~~ 478 (1091)
.+|.|.+ .+|.| ....|.+||.... .....+.||.++|+|+.|-|+.+. ..+++|+.|+.|.+|.++.. .++
T Consensus 20 ~sw~~~~-~vafG-a~~~Iav~dp~k~---~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i 94 (764)
T KOG1063|consen 20 SSWGPGG-LVAFG-AGPAIAVADPEKI---LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI 94 (764)
T ss_pred ccccccc-eEEec-CCceEEEeCcccc---eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE
Confidence 3444433 44444 5567999998765 234478899999999999987651 15899999999999999843 345
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCC--ceeeecCCCCc--EEEEEEcC-CCCEEEEEecCCCC
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLG--CTRMAYSA-NGRRLFSCGTSKEG 553 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~--i~~~~~s~-d~~~l~~~~~~~~~ 553 (1091)
..+.+|...+.++.- ......+...|+.+.+||.+..+ ....+....+. ..|+++.+ .+.++.+++.+
T Consensus 95 ~~~~g~~~~~~cv~a----~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs--- 167 (764)
T KOG1063|consen 95 YTIQGHCKECVCVVA----RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS--- 167 (764)
T ss_pred EeecCcceeEEEEEe----eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc---
Confidence 677777766666532 11223333789999999985544 11122222222 34566667 45566666542
Q ss_pred ceEEEEEecCCc--eeeEEEecccccccceEEEEEcCCCC---EEEEEeCCCeEEEEECCCCe-----------------
Q 001367 554 ESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQ----------------- 611 (1091)
Q Consensus 554 ~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~---~l~~~s~dg~i~iwd~~~~~----------------- 611 (1091)
+..|.++.-... +.+..+.||. +.|.+++|...+. +++++|.|..||||.+.-+.
T Consensus 168 ~~~v~~~s~~~d~f~~v~el~GH~---DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~ 244 (764)
T KOG1063|consen 168 KFVVDLYSSSADSFARVAELEGHT---DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL 244 (764)
T ss_pred ceEEEEeccCCcceeEEEEeeccc---hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence 556667655433 4566788888 9999999986554 67789999999999764322
Q ss_pred ----eEEEEe--------CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccc
Q 001367 612 ----LLTTID--------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1091)
Q Consensus 612 ----~~~~~~--------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1091)
....+. ..++...|+++.|+|.+..|++++.|.++.+|...+..-+..- .+.+ .
T Consensus 245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~--------~vRl------G 310 (764)
T KOG1063|consen 245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD--------VVRL------G 310 (764)
T ss_pred ceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE--------EEEe------e
Confidence 111111 1244558999999999999999999999999987654222111 1111 1
Q ss_pred cccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEE
Q 001367 680 GAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 759 (1091)
Q Consensus 680 ~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~v 759 (1091)
.+|...++|.+...+|+++.+++-+..|..++|.. .+...... .....+|...|+.++|.|.|+++++.+.|.+-|+
T Consensus 311 e~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt--~d~~~w~~-~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRl 387 (764)
T KOG1063|consen 311 EVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT--KDKTFWTQ-EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRL 387 (764)
T ss_pred cccccccceeeEEEcCCCCEEEEecccCcEEEEec--cCccceee-ccccccccccceeeeecCCCCEEEEeccccceee
Confidence 12233345555555999999999999999999992 22222222 2223579999999999999999999999999988
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeC-CeEEEEEccC-------
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT------- 831 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~------- 831 (1091)
+---..+.+ |.- +.. .+-|...++|+++-+....+++|.| ..+|+|+...
T Consensus 388 Fa~wg~q~~-------------wHE-----iaR----PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~ 445 (764)
T KOG1063|consen 388 FARWGRQQE-------------WHE-----IAR----PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLM 445 (764)
T ss_pred ecccccccc-------------eee-----ecc----cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHH
Confidence 753211110 111 111 1127778888888875455555554 5577776421
Q ss_pred ------------------------------------cee---------------------------------EEEecCCC
Q 001367 832 ------------------------------------FKT---------------------------------ILTIMPPS 842 (1091)
Q Consensus 832 ------------------------------------~~~---------------------------------~~~~~~~~ 842 (1091)
|.. ++.+.+|.
T Consensus 446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG 525 (764)
T KOG1063|consen 446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG 525 (764)
T ss_pred HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence 100 01234778
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCC-----eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 917 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg-----~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~ 917 (1091)
..|.+++.+| +++++|+++... .|++|+..+-..+..+.+|+-.|+.++|||||++|+++|.|+++.+|.....
T Consensus 526 yEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 526 YEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQED 604 (764)
T ss_pred eeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence 8899999999 899999987543 7999999998888999999999999999999999999999999999998654
Q ss_pred ceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCc--ceeee-eecCCccCEEEEEEee-----C
Q 001367 918 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPISSVPISQATFSC-----D 988 (1091)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~--~~~~~-~~~~h~~~v~~v~fs~-----d 988 (1091)
.... ..+...+.|.. -|.+..|+||++++|+ +.|.+|.+|..... +.+.. -...+...|+.+++.| .
T Consensus 605 ~~~e-~~fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~ 680 (764)
T KOG1063|consen 605 IKDE-FRFACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEK 680 (764)
T ss_pred cchh-hhhccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccc
Confidence 3222 22333455554 6899999999999998 68999999999887 55544 2344688999999987 2
Q ss_pred CCEEEEEEcCCcEEEEeCCCCc----eEEEeecccccCCCCcccccceeEEEeCCC---------CCCeEEEEecCCcEE
Q 001367 989 CRMVFTSFVDGTLSIHEASNLE----VQCRILSTAYLRPTTSCLHVYPHAIAAHPL---------KPTQFAVGLTNGEVY 1055 (1091)
Q Consensus 989 g~~l~t~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~---------d~~~l~~g~~dg~v~ 1055 (1091)
+..+++|-+.|.|.+|....-. ...........+...+...|. .+.|.|. +...|++|++|.+++
T Consensus 681 ~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vr 758 (764)
T KOG1063|consen 681 GDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVR 758 (764)
T ss_pred cceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEeccccccccccccceeEEeeecccceeE
Confidence 3378889999999999965211 110111111111222344455 4566663 123579999999999
Q ss_pred EEecC
Q 001367 1056 VIEPN 1060 (1091)
Q Consensus 1056 ~w~~~ 1060 (1091)
++++.
T Consensus 759 i~nv~ 763 (764)
T KOG1063|consen 759 IFNVD 763 (764)
T ss_pred Eeecc
Confidence 99874
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=282.10 Aligned_cols=295 Identities=16% Similarity=0.189 Sum_probs=247.9
Q ss_pred ccccccEEEEEEecCC-CeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001367 730 KVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 808 (1091)
Q Consensus 730 ~~~~~~i~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 808 (1091)
.+|.+.|..++..+.+ ..+++++.|..+.+|++... |...|..... +. ||...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence 5699999999999884 46677888999999998654 2233332222 32 5999999999
Q ss_pred ecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecc--cc
Q 001367 809 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--HS 885 (1091)
Q Consensus 809 ~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~--h~ 885 (1091)
+++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|++... +..++.. |.
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~ 148 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHR 148 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCc
Confidence 999999999998 89999999999999999999999999999999 8999999999999999998854 4444433 37
Q ss_pred CCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEE
Q 001367 886 KRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 962 (1091)
Q Consensus 886 ~~V~~l~~spd--g~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd 962 (1091)
+-|.|+.|+|+ ..+|+++|.|++|++||+.+ .+....+.||.. .++.+++||||.++++ +.||.+.+||
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEE
Confidence 89999999998 78999999999999999998 445666777766 8999999999999999 6899999999
Q ss_pred cCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCC
Q 001367 963 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1042 (1091)
Q Consensus 963 ~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1042 (1091)
+..++++.. .+|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+...-+ ......+.++.++|++ ||
T Consensus 221 L~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 221 LNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred ccCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence 999999765 3578999999999998777765 45679999999999887776544333 1234567789999999 69
Q ss_pred CeEEEEecCCcEEEEecC
Q 001367 1043 TQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1043 ~~l~~g~~dg~v~~w~~~ 1060 (1091)
+.|++|..|+.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999984
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=322.26 Aligned_cols=277 Identities=17% Similarity=0.272 Sum_probs=241.7
Q ss_pred cCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceee---eceeEE---------eccccccc
Q 001367 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVW---------DIGACSML 386 (1091)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~---~~~~~~---------~~~~~~~~ 386 (1091)
...+|.-|..+...-...++|+.||+|+. ++|.|..|..|++|.+...++... ..+..- ++......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 56788889888887777999999999998 889999999999999985332110 000000 11111122
Q ss_pred eeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCc
Q 001367 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1091)
Q Consensus 387 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~ 466 (1091)
.....+.||+++|..+.|+|+.++|++|+.|++|++|.+.+..++- ...||..||+++.|+|-|- +++|++.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3344588999999999999999999999999999999999976554 5779999999999999998 8999999999
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 546 (1091)
.++|......+++.+.+|-+.|.|+.|+|+ ..++++||.|.+|++||+.++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCc--ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 999999999999999999999999999774 569999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001367 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1091)
++. ++.|.+||+.+++.+..+.+|. +.|.++.|+.+|..|++|+.|.+|++||+..-
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 976 7779999999999999999997 99999999999999999999999999998753
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=300.65 Aligned_cols=476 Identities=14% Similarity=0.219 Sum_probs=350.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+..++..|.++.|+|...+++++-..|.|.|||.++...++ .+.-..-||.+..|-+--+ ++++|+.|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44588999999999999999999999999999999987776 5556777999999998777 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC-CceeeecCCCCcEEEEEEcC-CCCEEEEEec
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 549 (1091)
..+++.++.|..|..-|.+++.+|.. .++++++.|-+|++||++.. .+..++.+|.+-|++++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999998764 69999999999999999875 45668999999999999999 5678888887
Q ss_pred CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
+++|.+|.+.+..+..++.+|. ..|+|+.+-+- ..++++|++|.+++|||..+..+++++.+|.+ .|..
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~ 232 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF 232 (794)
T ss_pred ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence 6779999999999999999998 89999999764 47999999999999999999999999998866 6899
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
++|+|.-..+++|+.||+++||+..+-+....+...-+.++|++..+....+++|.+. |
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~De---------------------g 291 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDE---------------------G 291 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccC---------------------C
Confidence 9999999999999999999999999988888888888899999875554444444333 3
Q ss_pred ccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC-ceEEEeecCCcccccccceeeccCCccccCCC
Q 001367 708 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 786 (1091)
Q Consensus 708 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1091)
.+.+ .+. .....+..++.|+.+-+.... -.+.+-.+... .++..
T Consensus 292 ~i~v-~lg------------------reeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~----------------~ev~D 336 (794)
T KOG0276|consen 292 SVTV-KLG------------------REEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQ----------------KEVTD 336 (794)
T ss_pred cEEE-Ecc------------------CCCCceeecCCccEEEEcCceeeeeeceeccCc----------------ccccC
Confidence 3221 111 011123333444332222211 00111000000 02233
Q ss_pred CCceeeecCCCCC-CCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001367 787 GPQFMVNDTTDSN-SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 865 (1091)
Q Consensus 787 ~~~~~~~~~~~~~-~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg 865 (1091)
|+.+ ....++-+ -.-....++.||+|+++++++||.-.||..-..+ ....+......|++ |....|+-..++
T Consensus 337 gErL-~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~ 409 (794)
T KOG0276|consen 337 GERL-PLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNG 409 (794)
T ss_pred Cccc-cchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCC
Confidence 3311 11111101 1123346788999999999999998888633221 12445667788999 766677777788
Q ss_pred eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcC
Q 001367 866 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 945 (1091)
Q Consensus 866 ~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~ 945 (1091)
.|+++ .+.+....+...-. +-.+ -.|.+|...+ ++.+++||-++++. ++..+- ....+.|+.
T Consensus 410 ~vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~l-----VrrI~v------~~k~v~w~d 471 (794)
T KOG0276|consen 410 NVKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGEL-----VRRIEV------TSKHVYWSD 471 (794)
T ss_pred ceEEE--ecceeccccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceE-----EEEEee------ccceeEEec
Confidence 89988 55665555432111 1111 1345555544 55699999998653 333322 234799999
Q ss_pred CCCEEEEEecCeEEEEEcC
Q 001367 946 DQTRFLLVHETHLAIYEAE 964 (1091)
Q Consensus 946 dg~~la~~~d~~i~vwd~~ 964 (1091)
+|.+++.+.|...+++...
T Consensus 472 ~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 472 NGELVAIAGDDSFYILKFN 490 (794)
T ss_pred CCCEEEEEecCceeEEEec
Confidence 9999999888876666544
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=308.40 Aligned_cols=582 Identities=16% Similarity=0.225 Sum_probs=394.6
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
+...+..|..++|+|... .+.++-..|.|.+||.+-|.++.. +.+|.++|..++|+|++.
T Consensus 5 fEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQP 64 (1202)
T ss_pred hhcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCC
Confidence 344566899999999998 557778889999999999998876 788999999999999999
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
++++|+.|..|+||+..+.+++. ++.||-+.|..+.|++.-. +++++|.|.+|+||++.+++++..+.||..-|.
T Consensus 65 lFVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred eEEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 99999999999999999987665 7889999999999999777 899999999999999999999999999999999
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
|..|+|..| .++|+|.|.+|++||+...+......+ ++.-...+..+. .-++--...-...
T Consensus 140 cAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 140 CAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKH 200 (1202)
T ss_pred eeccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeee
Confidence 999998765 899999999999999875443332211 000001111110 0011111122345
Q ss_pred EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEE
Q 001367 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1091)
Q Consensus 570 ~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1091)
.+.||. ..|+-++|+|.-..+++|++|..|++|.+..-+.-..-...++...|.++.|+|...++++.+.|++|++|
T Consensus 201 VLEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 201 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 678887 89999999999999999999999999999876655444444556689999999999999999999999999
Q ss_pred ECCCCCeecccccccccceeeeeccccccccccccCCccc------CCCCCCCCCcccccccccccccccccccCCcccc
Q 001367 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS------NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 723 (1091)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~------~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~ 723 (1091)
|+.....++.++...+..+.++.+|.....++|-+.|.+- .....-.++.+.-.- |..|+.+|+.+.......
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~ 356 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVA 356 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeE
Confidence 9999999999999999999999999999999888877431 111122233333222 678888888765554444
Q ss_pred eeecCCccccccEEEEEEecCCCeEEEee--cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCC
Q 001367 724 SLLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 801 (1091)
Q Consensus 724 ~~~~~~~~~~~~i~~~~~s~dg~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1091)
.++.+.. ...++.++.++|....++.++ .+|...++.++....... +.... -..
T Consensus 357 ~lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~------------~~~~~-----------~k~ 412 (1202)
T KOG0292|consen 357 SLRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVS------------DGKDV-----------KKG 412 (1202)
T ss_pred eccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccC------------Cchhh-----------hcC
Confidence 4443321 345778899999877666554 356777766654311000 00000 011
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l 881 (1091)
....++-++.++-.+..-++..+.+-++.. +..+.+..+ ..+..+-+.- .|.+|+. ....|.+||++..+.+..+
T Consensus 413 tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si 487 (1202)
T KOG0292|consen 413 TGEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSI 487 (1202)
T ss_pred CCCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEE
Confidence 122222222222212222234444444432 222333222 2344455554 5655553 3457999999988877776
Q ss_pred ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEE
Q 001367 882 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 961 (1091)
Q Consensus 882 ~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vw 961 (1091)
. ...|.-+.||+|..++|--+. .+|.|.+.+-. .+...... -+|.+-+|..+|-+|.+..+.-= |
T Consensus 488 ~--~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~------l~~sihEt----iriksgawde~gVfiYtT~nHik--Y 552 (1202)
T KOG0292|consen 488 K--VSKVKYVVWSNDMSRVALLSK-HTITIADKKLE------LLCSIHET----IRIKSGAWDEDGVFIYTTLNHIK--Y 552 (1202)
T ss_pred e--cCceeEEEEcCccchhhhccc-ceEEEEecchh------heecchhe----eEeeeceeccCceEEEEehhhhh--h
Confidence 5 467899999999988876654 56888876531 12222111 14677788888887776432210 1
Q ss_pred EcCCcc--eeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 962 EAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 962 d~~~~~--~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
-+.+|. .++++ ..++.- +--.|..++.-..|+.+.+.+++.-
T Consensus 553 al~~GD~GIikTL----d~~iyi--tkv~gn~V~cl~rd~~~~~~~IDpt 596 (1202)
T KOG0292|consen 553 ALENGDSGIIKTL----DKPIYI--TKVKGNKVFCLNRDGEIECLTIDPT 596 (1202)
T ss_pred hhccCCcceEEec----ccceEE--EEeeCCEEEEEecCCCeEEEeechH
Confidence 111111 11110 112211 1224667777777888888777654
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=294.99 Aligned_cols=292 Identities=22% Similarity=0.330 Sum_probs=268.0
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+.+.+.||...|+.+-|+|+-. ++++++.|++|++||..+|++... +.||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 56678899999999999999996 889999999999999999998765 8899999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
+..|++||+++.|-.+++||.++. .+....+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|.++.+|.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999873 233335779999999999999998 8999999999999999999999999999
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCC---------------CEEEEEec
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCGT 549 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~---------------~~l~~~~~ 549 (1091)
...|..+.. ..||.++++++.|.++++|-+.+......+..|..++.+++|.|.. +++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999998887 6789999999999999999999999999999999999999997642 35666654
Q ss_pred CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
|++|++||+.++.++.++.+|. +.|..++|+|.|++|+++.+|+++++||+++++++..+..+.+ .++++.
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 7789999999999999999998 9999999999999999999999999999999999999998877 589999
Q ss_pred EccCCCEEEEEECCCeEEEEEC
Q 001367 630 FNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
|+.+..++++|+-|.++++|..
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999974
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=289.45 Aligned_cols=335 Identities=15% Similarity=0.186 Sum_probs=290.1
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..+.++..|++.|.+++.+|+.+ ++|||+.|....||+..+|+.... +.+|+..|+++.|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~F 114 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSF 114 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEE
Confidence 45678899999999999999776 899999999999999999997765 8899999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
|.||.+||+|+.+|.|+||+..++.... .+.+....+.-+.|+|-+. .|+.|+.||.+-+|.+.++...+.+.||
T Consensus 115 shdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh 189 (399)
T KOG0296|consen 115 SHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGH 189 (399)
T ss_pred ccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCC
Confidence 9999999999999999999999987554 4545667788999999888 8999999999999999998888999999
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC-CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
..++++=.|. ++|+.++++..||+|++||+.+..+...+... .....++.++.++..++.|.. ++.+++-+..
T Consensus 190 ~~~ct~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~~ 263 (399)
T KOG0296|consen 190 NSPCTCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNNG 263 (399)
T ss_pred CCCccccccc--CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEccc
Confidence 9999999995 46899999999999999999999988877643 346778889999998888865 5668888888
Q ss_pred CceeeEEEec--------ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC
Q 001367 564 EGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1091)
Q Consensus 564 ~~~~~~~~~~--------~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1091)
+|+.+....+ +......|.++.++..-+..++|+-||+|.|||+...++........ .|..+.|-+ ..
T Consensus 264 sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~-t~ 339 (399)
T KOG0296|consen 264 SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLN-TD 339 (399)
T ss_pred cceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcC-cc
Confidence 8888777663 22122345555566666788899999999999999888877776554 489999998 78
Q ss_pred EEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 636 LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|++++.+|.|+.||.++++......+|...|.++++ +|+.+++++++.|++.++|+..
T Consensus 340 ~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l---------------------s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL---------------------SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeeccCceEEeeeccccceEEEEecCchheeEEEE---------------------cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999999999998 7889999999999999998753
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=278.48 Aligned_cols=535 Identities=12% Similarity=0.158 Sum_probs=382.0
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
+-..-++|+. -=..+-+-|.|..+...+ +-+.+++++...+.. +.||+..|.|++.
T Consensus 57 ewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~v 112 (626)
T KOG2106|consen 57 EWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAV 112 (626)
T ss_pred EEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEee
Confidence 3344456664 334466778887443333 456677775532221 6789999999999
Q ss_pred CCCCCEEEEEECCC--------EEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEEEeCCC
Q 001367 405 SPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 405 spdg~~las~~~d~--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
+||.-.+|+|-..| .+++||..+-..+. .+......|.+++||+- |..+..+--+.+..+.|||...
T Consensus 113 HPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk 189 (626)
T KOG2106|consen 113 HPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQK 189 (626)
T ss_pred cCCceeeccCcccccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchh
Confidence 99999999874433 59999977654333 55566678999999985 3422333445677899999999
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee---ecC-CCCcEEEEEEcCCCCEEEEEecC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDA-PGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
+......+..+..|....|+|... -++.....|.+.+|+++.+..... +.. ...-|.|++|.++|..+- +
T Consensus 190 ~~~~~~vk~sne~v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g--- 263 (626)
T KOG2106|consen 190 KAKLGPVKTSNEVVFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G--- 263 (626)
T ss_pred hhccCcceeccceEEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e---
Confidence 988888887888889999988743 344445568899999887665442 222 225799999999998653 3
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
|.++.|.||+..+.+..+....|. +.|.+++...+|. |++|+.|+.|..|| ..-+.++..+.+.....+..++-
T Consensus 264 -DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e 337 (626)
T KOG2106|consen 264 -DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAE 337 (626)
T ss_pred -cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEec
Confidence 347789999998887777766665 9999999998886 55599999999999 55556666666555556666654
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
...+ |++|+..+.|..=.++++..+
T Consensus 338 ~~~d--i~vGTtrN~iL~Gt~~~~f~~----------------------------------------------------- 362 (626)
T KOG2106|consen 338 GKGD--ILVGTTRNFILQGTLENGFTL----------------------------------------------------- 362 (626)
T ss_pred CCCc--EEEeeccceEEEeeecCCceE-----------------------------------------------------
Confidence 4322 677766555543333322111
Q ss_pred cccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCce
Q 001367 711 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 790 (1091)
Q Consensus 711 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1091)
...+|......++..|+...+++++.|+.+++|+ ..+ -.|...
T Consensus 363 -----------------~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt~~----- 405 (626)
T KOG2106|consen 363 -----------------TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWTKI----- 405 (626)
T ss_pred -----------------EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEEEE-----
Confidence 0123566777888889988999999999999998 111 112211
Q ss_pred eeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001367 791 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 869 (1091)
Q Consensus 791 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~i 869 (1091)
...++.|+.|+|.| .+|.|. .|...+.|.++...+..-. ...++++++|+| +|.+||+|+.|+.|+|
T Consensus 406 ---------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 406 ---------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYI 473 (626)
T ss_pred ---------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeEEE
Confidence 35678899999999 888887 7999999999965555444 488999999999 9999999999999999
Q ss_pred EeccCcc-eeeeec-cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee--------------eeccCCCcC
Q 001367 870 YNARSSE-VISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS--------------LQTPDGVMT 933 (1091)
Q Consensus 870 wd~~~~~-~~~~l~-~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~--------------~~~~~~~~~ 933 (1091)
|.+.... ...... .|..+|+.+.||+|+++|.+-+.|-.|-.|.-.. +..... +....+..
T Consensus 474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~--~~~~ts~kDvkW~t~~c~lGF~v~g~s~- 550 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE--CKQITSVKDVKWATYTCTLGFEVFGGSD- 550 (626)
T ss_pred EEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc--CcccceecceeeeeeEEEEEEEEecccC-
Confidence 9987643 332222 2347999999999999999999999999993322 211111 11111111
Q ss_pred CCCCceEEEEcCCCCEEEEEe-cCeEEEEEcC--CcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 934 LAPSETHIQFHKDQTRFLLVH-ETHLAIYEAE--ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 934 ~~~~i~~l~fs~dg~~la~~~-d~~i~vwd~~--~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
...+..++-|.+.+++|++. .|+|++|... +.+.....+.+|++.|++++|+-+...+++.+.|.+|..|++
T Consensus 551 -~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 551 -GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred -CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 13466777788889999975 4799999864 233334456789999999999999999998889999999986
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=286.68 Aligned_cols=301 Identities=18% Similarity=0.249 Sum_probs=269.1
Q ss_pred ccCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc
Q 001367 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1091)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1091)
.-+..|-.+.+++.||.+.|.|+++.|-.+ ++++|+.|++|+|||+.+|++..+ +.||-.
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~ 194 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIE 194 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhh
Confidence 335567788999999999999999999987 779999999999999999998876 889999
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
.|..+++|+-..||.+++.|+.|+.||++..+.++ ...||-..|.+++..|.-. .|++|+.|.+++|||+++...
T Consensus 195 ~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 195 TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred eeeeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccce
Confidence 99999999999999999999999999999988777 5679999999999999888 899999999999999999999
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
+..+.||..+|.++.+.+. ...+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+ .|
T Consensus 270 V~~l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----ni 342 (460)
T KOG0285|consen 270 VHVLSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NI 342 (460)
T ss_pred EEEecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cc
Confidence 9999999999999998554 3579999999999999999999999999999999999999999999988753 49
Q ss_pred EEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe---CCC---CCCCCceEEEc
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFN 631 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s 631 (1091)
..|++..|..+..+.+|. ..|++++.+.|+ .+++|+++|.+.+||.++|...+... ..+ ....|.+.+|.
T Consensus 343 k~w~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 343 KQWKLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred eeccCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 999999999999988887 889999988764 78999999999999999886654442 222 22357899999
Q ss_pred cCCCEEEEEECCCeEEEEECCCC
Q 001367 632 KNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
..|..|+++..|.+|++|.-...
T Consensus 419 ktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 419 KTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ccCceEEeccCCcceEEEecccc
Confidence 99999999999999999986543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=279.19 Aligned_cols=339 Identities=18% Similarity=0.230 Sum_probs=286.9
Q ss_pred EEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEe
Q 001367 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1091)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1091)
.|..|+..|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|...|.++.| +.+|.+|++|+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence 6789999999999999777 8999999999999999999999999999999999999 55889999999999999999
Q ss_pred cCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE
Q 001367 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 595 (1091)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++-.|.|+|+.+++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999998878888999999999999999876 6679999999988889999988 89999999999999999
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccc
Q 001367 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
+..||+|++||..+++++..+....+ ....++.++..+..++.|..++.+++-+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 99999999999999999999876554 3568899999999999999999888877665543322110
Q ss_pred cccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCc
Q 001367 676 STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 755 (1091)
Q Consensus 676 ~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 755 (1091)
.+..+....
T Consensus 274 --------------------------------------------------------------------~~~~l~~~~--- 282 (399)
T KOG0296|consen 274 --------------------------------------------------------------------TVPELKPSQ--- 282 (399)
T ss_pred --------------------------------------------------------------------CCccccccc---
Confidence 000000000
Q ss_pred eEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCcee
Q 001367 756 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT 834 (1091)
Q Consensus 756 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~ 834 (1091)
......|..+.++..-.+.|+|+ ||+|.|||+.+.+.
T Consensus 283 ------------------------------------------e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~ 320 (399)
T KOG0296|consen 283 ------------------------------------------EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL 320 (399)
T ss_pred ------------------------------------------hhhhhhhhhcccccccchhhcccccceEEEEecccchh
Confidence 00122334444555556777787 89999999988776
Q ss_pred EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q 001367 835 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 914 (1091)
Q Consensus 835 ~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~ 914 (1091)
...+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|++++++|+|.|++.+|+++
T Consensus 321 R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 321 RHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred heecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 66655 788899999987 468889999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 001367 915 D 915 (1091)
Q Consensus 915 ~ 915 (1091)
.
T Consensus 398 ~ 398 (399)
T KOG0296|consen 398 P 398 (399)
T ss_pred C
Confidence 4
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=263.17 Aligned_cols=295 Identities=17% Similarity=0.248 Sum_probs=251.7
Q ss_pred eEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce--eeEEEeccccc
Q 001367 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ 577 (1091)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 577 (1091)
-+|++++.|.+|++|...++.+..++....+.|..+.+.||++.|++++ ...|++||++++. ++..+.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~-- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT-- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence 4799999999999999999999999999999999999999999999987 4569999999875 588899987
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCee
Q 001367 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 578 ~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
..|.++.|..+|+++++||+||+++|||++.....+.+... .+|+++..+|+...|+++..+|.|++||+.+....
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 89999999999999999999999999999996666666543 57999999999999999999999999999866333
Q ss_pred cccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEE
Q 001367 658 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 737 (1091)
Q Consensus 658 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~ 737 (1091)
..+- |. ....|.
T Consensus 160 ~~li------------------------------------------------------------------Pe--~~~~i~ 171 (311)
T KOG0315|consen 160 HELI------------------------------------------------------------------PE--DDTSIQ 171 (311)
T ss_pred cccC------------------------------------------------------------------CC--CCccee
Confidence 2211 11 235788
Q ss_pred EEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEE
Q 001367 738 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 817 (1091)
Q Consensus 738 ~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 817 (1091)
++++.|||..++++...|..++|++..... .+.. ... .+...|...+....+|||+++||
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l-~P~--~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASEL-EPV--HKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccc-eEh--hheecccceEEEEEECCCCcEEE
Confidence 999999999999999999999999865211 0000 001 11224889999999999999999
Q ss_pred EEe-CCeEEEEEccCc-eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEEC
Q 001367 818 SAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 894 (1091)
Q Consensus 818 ~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 894 (1091)
+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|+.+++|++..++.+....+|..+..|++..
T Consensus 232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 998 899999999988 66677889999999999999 99999999999999999999999999999999988888764
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=276.48 Aligned_cols=533 Identities=12% Similarity=0.127 Sum_probs=385.3
Q ss_pred EEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCC------
Q 001367 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG------ 509 (1091)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------ 509 (1091)
.++|+.-. ..+-+.|.|.-++++. +.+.+++.+.. ..+-+.+|+..|.+++++|+. ..+++|-..|
T Consensus 61 gYRG~dcR-~Nly~lptgE~vyfvA----~V~Vl~n~ee~-~Qr~y~GH~ddikc~~vHPdr--i~vatGQ~ag~~g~~~ 132 (626)
T KOG2106|consen 61 GYRGVDCR-NNLYLLPTGELVYFVA----AVGVLYNWEER-SQRHYLGHNDDIKCMAVHPDR--IRVATGQGAGTSGRPL 132 (626)
T ss_pred eecceeee-ceeEEccCccEEEEec----cEEEEEeehhh-hcccccCCCCceEEEeecCCc--eeeccCcccccCCCcC
Confidence 34444433 3466788887432222 24566666442 234566899999999997743 4566554444
Q ss_pred --eEEEEecCCCCceeeecCCCCcEEEEEEcCC--CCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEE
Q 001367 510 --KIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1091)
Q Consensus 510 --~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~ 585 (1091)
.+++||-.+...+..+......|.+++|++- |..+...- ...+..+.+||.+.+.......... ..|..+.
T Consensus 133 ~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD--~s~~h~lSVWdWqk~~~~~~vk~sn---e~v~~a~ 207 (626)
T KOG2106|consen 133 QPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD--DSNPHMLSVWDWQKKAKLGPVKTSN---EVVFLAT 207 (626)
T ss_pred CCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec--CCCccccchhhchhhhccCcceecc---ceEEEEE
Confidence 4999998888888888877789999999983 44444442 2346779999998887766666544 6788999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeEEEE---eCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccc
Q 001367 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTI---DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
|+|.+..+++....+.+.+|+.+++.+.+.. ..+.. ..|.+++|.++|. +++|..+|.|.||+..+.+..+....
T Consensus 208 FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~a 285 (626)
T KOG2106|consen 208 FHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHA 285 (626)
T ss_pred eccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeee
Confidence 9999998988888999999999998766543 33333 5799999999886 78999999999999988888777779
Q ss_pred ccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEe
Q 001367 663 LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 742 (1091)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 742 (1091)
|.+.|.++.. ..+|.++ +|+.|..|..||-+ -...+.+.+|+ ..+.|+.++-.
T Consensus 286 H~ggv~~L~~---------------------lr~Gtll-SGgKDRki~~Wd~~---y~k~r~~elPe--~~G~iRtv~e~ 338 (626)
T KOG2106|consen 286 HDGGVFSLCM---------------------LRDGTLL-SGGKDRKIILWDDN---YRKLRETELPE--QFGPIRTVAEG 338 (626)
T ss_pred cCCceEEEEE---------------------ecCccEe-ecCccceEEecccc---ccccccccCch--hcCCeeEEecC
Confidence 9999999887 4555544 49999999999933 23334445555 56677666644
Q ss_pred cCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-C
Q 001367 743 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G 821 (1091)
Q Consensus 743 ~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d 821 (1091)
..+ ++.+...+.|..=.+. .+..+. ..+|......++.+|+...+++++ |
T Consensus 339 ~~d--i~vGTtrN~iL~Gt~~----------------------~~f~~~-----v~gh~delwgla~hps~~q~~T~gqd 389 (626)
T KOG2106|consen 339 KGD--ILVGTTRNFILQGTLE----------------------NGFTLT-----VQGHGDELWGLATHPSKNQLLTCGQD 389 (626)
T ss_pred CCc--EEEeeccceEEEeeec----------------------CCceEE-----EEecccceeeEEcCCChhheeeccCc
Confidence 333 6666655554432211 111111 125888999999999999999888 8
Q ss_pred CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEE
Q 001367 822 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 901 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~la 901 (1091)
+.+++|+ ..++..+.. ...++.|+.|+| .| .+|.|+..|...+.|.++...+..-.. ..++++++|+|+|.+||
T Consensus 390 k~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 390 KHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLA 463 (626)
T ss_pred ceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEE
Confidence 9999999 444444433 456789999999 77 999999999999999999666655554 88999999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeee---------
Q 001367 902 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ--------- 971 (1091)
Q Consensus 902 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~--------- 971 (1091)
.|+.|+.|+||.++.+..... .+....+ .+|+.+.||+|+++|.+ +.|-.|..|....-+.+..
T Consensus 464 vgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~ 537 (626)
T KOG2106|consen 464 VGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATY 537 (626)
T ss_pred EecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeee
Confidence 999999999999987553321 2222333 37999999999999999 7788899994332222111
Q ss_pred --------eecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCC
Q 001367 972 --------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1043 (1091)
Q Consensus 972 --------~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1043 (1091)
+...|...|..++-+.+.+++|+|...|+|++|..+.-...+.+ +....|+..|.+ ++|.-. ..
T Consensus 538 ~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~-----he~~ghs~~vt~--V~Fl~~-d~ 609 (626)
T KOG2106|consen 538 TCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS-----HEYGGHSSHVTN--VAFLCK-DS 609 (626)
T ss_pred EEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc-----eeeccccceeEE--EEEeeC-Cc
Confidence 11234666777778888999999999999999998866554322 222335666774 555553 46
Q ss_pred eEEEEecCCcEEEEec
Q 001367 1044 QFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1044 ~l~~g~~dg~v~~w~~ 1059 (1091)
.|++.++|.+|..|++
T Consensus 610 ~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 610 HLISTGKDTSIMQWRL 625 (626)
T ss_pred eEEecCCCceEEEEEe
Confidence 6777679999999997
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=287.59 Aligned_cols=279 Identities=20% Similarity=0.318 Sum_probs=252.3
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..|++++|+.+|. +||+|+.||.++||+.. |.++.+ +..|.++|.++.|+.+|.||+++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~-G~l~~t-------------------l~~HkgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKD-GNLIST-------------------LGQHKGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecC-chhhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence 4899999999998 88999999999999965 444443 67799999999999999999999
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
+.|+++.+||..+|.... .+.-|..+-.++.|-.+.. +++++.|+.|+|+.+...+++.++.+|.++|.++.|.
T Consensus 295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 999999999999987554 4566888878899987775 8999999999999999999999999999999999995
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCC---------EEEEEecCCCCceEEEEEecCCc
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR---------RLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~---------~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
+ .+.+|++++.|++++||+.........+..|...|..+.|+|.|. .+++++. +++|++||+..+
T Consensus 369 ~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g 442 (524)
T KOG0273|consen 369 P--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG 442 (524)
T ss_pred C--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence 4 568999999999999999999999999999999999999999653 5677765 778999999999
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCe
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1091)
.++..|..|. .+|.+++|+|+|.++++|+.||.|.+|+.++++..+.....+. |..++|+.+|..|..+..|+.
T Consensus 443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~---Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG---IFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe---EEEEEEcCCCCEEEEEecCCC
Confidence 9999999888 8999999999999999999999999999999999999876654 899999999999999999999
Q ss_pred EEEEECC
Q 001367 646 IKILETP 652 (1091)
Q Consensus 646 i~iwd~~ 652 (1091)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=270.82 Aligned_cols=291 Identities=19% Similarity=0.248 Sum_probs=252.1
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
..+.||.++|..+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|+++|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence 45789999999999999998 78999999999999975432221 127799999999999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
+..|++++.|.+|+.||.++|+..+ .+++|..-|+.+.-+.-|.+ ++.+++.|+++++||+++..+++++. ....
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999998776 67899999999996655665 78899999999999999999988875 4567
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC---
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--- 564 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--- 564 (1091)
++++.| ...+..+++|+-|+.|++||++.......+.+|..+|+.+..+++|.++.+.+. +..+++||++.
T Consensus 177 ltAv~f--~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGF--KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEe--cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 888888 445678999999999999999999999999999999999999999999998876 77899999874
Q ss_pred -ceeeEEEecccc-cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 565 -GAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 565 -~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
..++..+.++.. .......++|+|++..+-+|+.|..+++||......+..+++|.+ .|+++.|+|....|.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEecc
Confidence 345778887651 112345678999999999999999999999999899999887765 7999999999999999999
Q ss_pred CCeEEEEE
Q 001367 643 ENRIKILE 650 (1091)
Q Consensus 643 dg~i~iwd 650 (1091)
|.+|++=+
T Consensus 329 dk~i~lge 336 (338)
T KOG0265|consen 329 DKTIYLGE 336 (338)
T ss_pred CceeEeec
Confidence 99998743
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=261.91 Aligned_cols=292 Identities=22% Similarity=0.336 Sum_probs=239.7
Q ss_pred eeeecccCCCCcEEEEEcCC-CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 326 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspd-g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..+++.+|++.|+.++|+|- |. +||+|+.|+.|+||+...+.-... +..+-.+|+..|.++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 46789999999999999999 86 899999999999999886433221 12224579999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC---ceeEEe
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 481 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~ 481 (1091)
+|.|++||+++.|.++.||.-..++ ......+.||...|.+++|+++|. +|++++.|+.|-||.+..+ ++...+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999877654 555668999999999999999999 8999999999999998754 567888
Q ss_pred cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC---CceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
+.|...|..+.|+|+.+ +|++++.|.+|++|+-... .....+..+...+.+++|++.|..|++++. +++++
T Consensus 147 ~~HtqDVK~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 99999999999998764 9999999999999977632 346688889889999999999999999976 77799
Q ss_pred EEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------eEEEEeCCCCCCCCceEEEcc
Q 001367 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
||-..+ .+.+ .|...+..+.|. ...|++++.|+.|++|.-...- .+... .+.+...|+++.|+|
T Consensus 221 Iw~~~~-----~~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 221 IWRLYT-----DLSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP 290 (312)
T ss_pred eeeecc-----Ccch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence 997542 1222 124788889998 5679999999999999765421 11111 122234799999999
Q ss_pred C-CCEEEEEECCCeEEEEECC
Q 001367 633 N-GTLLAVIANENRIKILETP 652 (1091)
Q Consensus 633 ~-~~~l~~~~~dg~i~iwd~~ 652 (1091)
. .++|+++++||.+++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 4 7899999999999999864
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-30 Score=271.45 Aligned_cols=550 Identities=12% Similarity=0.120 Sum_probs=388.1
Q ss_pred CccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
-..|+++|||.+.+.||.+-.+|.|.||++..+=... ..+.++. ..|.+++|++.++ |++.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 3689999999999999999999999999999864333 3556654 4899999997665 89999999999999999
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee--ecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
++.+..+....+.|++++.++.. ..++.|+.||.+..++...+..... +.-..+.+.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999997655 5899999999877777776665553 3445578999999999999999986
Q ss_pred CceEEEEEecCCceeeEEEe----ccc-ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 553 GESFLVEWNESEGAIKRTYQ----GLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~----~~~-~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
++.|++||..++..+.... +.. ....-|.++.|-.+ ..+++|...|+|.+||...+.+++.+..+.. .|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence 7789999999998776222 111 11245778888755 5789999999999999999999999888765 7999
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
++..+++.++++++.|+.|.-|...++..-
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------- 280 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------- 280 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence 999999999999999999988876654220
Q ss_pred ccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCC
Q 001367 708 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 787 (1091)
Q Consensus 708 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1091)
|-. ......|...|.+++..++ .+++++.|..+.+-.....+ ..+-
T Consensus 281 ----wv~-----------~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~--------------~~~h--- 326 (691)
T KOG2048|consen 281 ----WVI-----------NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK--------------NMDH--- 326 (691)
T ss_pred ----eee-----------eccccCCcccceeeeeecc--eEEecceeeEEEEccccccC--------------chhh---
Confidence 100 0011236778888888877 68888888888763321100 0000
Q ss_pred CceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCcee---------EEEecCCCCCeEEEEEcCCCCcEE
Q 001367 788 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVI 858 (1091)
Q Consensus 788 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~~~~~l 858 (1091)
.+.... ..-.-+...|..++++.-....+.+|.+.+... .+-.......|.+.+.|| +|++|
T Consensus 327 --~~~~~~------p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~I 397 (691)
T KOG2048|consen 327 --RQKNLF------PASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLI 397 (691)
T ss_pred --hccccc------cccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEE
Confidence 000000 001123455666777777788889998876522 122233456799999999 99999
Q ss_pred EEEeCCCeEEEEeccCccee-----eeeccccCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeccCCCc
Q 001367 859 AIGMDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVM 932 (1091)
Q Consensus 859 a~g~~dg~i~iwd~~~~~~~-----~~l~~h~~~V~~l~~spdg~~las~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 932 (1091)
+.+. -..++||.+.....+ .......-.+..+.|+-|++.++.++ .+..+.+.++++...+....++..
T Consensus 398 a~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~---- 472 (691)
T KOG2048|consen 398 AIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ---- 472 (691)
T ss_pred EEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----
Confidence 9876 446888887652221 11222334577889999998888888 778888888887554332222222
Q ss_pred CCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEee-CCCEEEEEEcCCcEEEEeCCCCc
Q 001367 933 TLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 933 ~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~-dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
.....|..+..||||++||+ +..+.|.+|++++++.-.... .-+..|+.++|+| +...|+.+..|+.|.-+|++..+
T Consensus 473 ~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 473 AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 12247999999999999999 788999999999877544321 2257899999995 55678889999999999995543
Q ss_pred eEEEeeccc--ccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 1011 VQCRILSTA--YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1011 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
. .++.... .+|.....-.-...-+.|+|. ....+...+.+-+++.|..
T Consensus 552 l-~~ws~~nt~nlpk~~~~l~~~~~gisfd~~-n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 552 L-TRWSKNNTRNLPKEPKTLIPGIPGISFDPK-NSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred h-hhhhhccccccccChhhcCCCCceEEeCCC-CccEEEEEcCcEEEEEecC
Confidence 2 2222100 111110000001123567774 4445555666677777764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=290.32 Aligned_cols=497 Identities=16% Similarity=0.201 Sum_probs=347.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+...+..|..++|+|...+++++-..|.|++||..-+.++. .+.+|.++|..++|+|++. ++++||.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44467889999999999999999999999999999988776 6889999999999999998 999999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
..+.+++.++.||-.-|..+.|++. -.+++|+|.|.+|+||++.+.+++..+.+|.+-|+|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 9999999999999999999999764 369999999999999999999999999999999999999999999999987
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEE---EEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceE
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l---~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1091)
|.+|++||+..-+....-.+ ++.=...+... +-|+.|- -....+.+|.. .|+-+
T Consensus 156 --DQTVRVWDisGLRkk~~~pg---------~~e~~~~~~~~~~dLfg~~Da----------VVK~VLEGHDR--GVNwa 212 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPG---------SLEDQMRGQQGNSDLFGQTDA----------VVKHVLEGHDR--GVNWA 212 (1202)
T ss_pred --cceEEEEeecchhccCCCCC---------CchhhhhccccchhhcCCcCe----------eeeeeeccccc--ccceE
Confidence 66799999875432221111 00000111111 1122222 22344555544 79999
Q ss_pred EEccCCCEEEEEECCCeEEEEECCCCC--eecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccc
Q 001367 629 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAE 706 (1091)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d 706 (1091)
+|+|.-.++++|++|..|++|.+...+ .+.+.++|...|.++-| .|..+.++|.+.|
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlf---------------------hp~q~lIlSnsED 271 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLF---------------------HPHQDLILSNSED 271 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEe---------------------cCccceeEecCCC
Confidence 999999999999999999999998764 45678999999999999 6777889999999
Q ss_pred cccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCC
Q 001367 707 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 786 (1091)
Q Consensus 707 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1091)
++||+||+......++..- ...+...++..|..+. ++++.|+-+.||.+...
T Consensus 272 ksirVwDm~kRt~v~tfrr------endRFW~laahP~lNL-fAAgHDsGm~VFkleRE--------------------- 323 (1202)
T KOG0292|consen 272 KSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNL-FAAGHDSGMIVFKLERE--------------------- 323 (1202)
T ss_pred ccEEEEecccccceeeeec------cCCeEEEEEecCCcce-eeeecCCceEEEEEccc---------------------
Confidence 9999999985544443332 4678889999999994 45555555666654321
Q ss_pred CCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeE--EEecCC---CCCeEEEEEcCCCCcEEEEE
Q 001367 787 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI--LTIMPP---SPTATSLAFNPHDNNVIAIG 861 (1091)
Q Consensus 787 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~--~~~~~~---~~~i~~l~~s~~~~~~la~g 861 (1091)
. .+.+++ +..|....+..|+-+|+.+.+.. ..++.. ..+..++.++|..+..+++.
T Consensus 324 ---------------r--pa~~v~--~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 324 ---------------R--PAYAVN--GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred ---------------C--ceEEEc--CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence 1 233443 34455555889999999875433 334433 36788999999655555554
Q ss_pred eCC-CeEEEEeccCcceeeeec---c-ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCC
Q 001367 862 MDD-STILIYNARSSEVISKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 936 (1091)
Q Consensus 862 ~~d-g~i~iwd~~~~~~~~~l~---~-h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 936 (1091)
..| |.-.++.+..... .... . ......++-.+. .++.+---.+..+.+-++.+.. .+.++.+.
T Consensus 385 ~~~n~~y~L~~ipk~~~-~~~~~~~~~k~tG~~a~fvar-Nrfavl~k~~~~v~ik~l~N~v---tkkl~~~~------- 452 (1202)
T KOG0292|consen 385 NLDNGEYELVQIPKDSD-GVSDGKDVKKGTGEGALFVAR-NRFAVLDKSNEQVVIKNLKNKV---TKKLLLPE------- 452 (1202)
T ss_pred ccCCCeEEEEEecCccc-ccCCchhhhcCCCCceEEEEe-cceEEEEecCcceEEecccchh---hhcccCcc-------
Confidence 444 4555555543211 0000 0 111222222222 2222222224556666665522 11122211
Q ss_pred CceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 937 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 937 ~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
....+-+.-+|.+|+ .+...|.+||+...+.+.++. -..|..+.||+|..+++--+. .+|.|.+
T Consensus 453 ~~~~IF~ag~g~lll-~~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~K-h~i~i~~ 516 (1202)
T KOG0292|consen 453 STDDIFYAGTGNLLL-RSPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLSK-HTITIAD 516 (1202)
T ss_pred cccceeeccCccEEE-EcCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhccc-ceEEEEe
Confidence 233455555555444 355678888888887777754 457888888888877665443 3455554
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=255.10 Aligned_cols=292 Identities=15% Similarity=0.215 Sum_probs=253.6
Q ss_pred CCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE
Q 001367 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1091)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1091)
.+|..-+++|..|.++|.++.|+-||+| ..+++.|.+|++|+...|.++++ ..+|...|.
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl 63 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL 63 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence 4677778899999999999999999994 57778899999999999999987 789999999
Q ss_pred EEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC--Ccee
Q 001367 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSRT 478 (1091)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~ 478 (1091)
.++.+.|...+++|+.|..|.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ .+++
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence 99999999999999999999999999998776 7899999999999999998 999999999999999875 4678
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
+.+......|.++.+ .+..|++|+.||+++.||++.+.....+ -+.+|++++|++|++..++++. ++.++
T Consensus 139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlr 208 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLR 208 (307)
T ss_pred chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceee
Confidence 888888889999987 3467999999999999999877655443 4568999999999999988876 67799
Q ss_pred EEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
+.|-.+|++++.+.+|......+ .++++....++++|++||.|++||+.....+..++.+.. ..+..++++|....++
T Consensus 209 LlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI 286 (307)
T ss_pred ecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence 99999999999999998433333 346777788999999999999999999999999887765 3478999999887777
Q ss_pred EEECCCeEEEEE
Q 001367 639 VIANENRIKILE 650 (1091)
Q Consensus 639 ~~~~dg~i~iwd 650 (1091)
++... .+..|.
T Consensus 287 ~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 287 TATGH-GDLFWY 297 (307)
T ss_pred EecCC-ceecee
Confidence 77654 455554
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=264.21 Aligned_cols=286 Identities=18% Similarity=0.284 Sum_probs=250.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .+++++.|.+|+.||
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWD 118 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEe
Confidence 78999999999999999999999999999999976543 33446889999999999999999 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+++|++++.+++|...|+++... ..+..++.+++.||++++||++.......+. ..-+++++.|..++..+++++-
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI-- 194 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI-- 194 (338)
T ss_pred cccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc--
Confidence 99999999999999999999843 2344678899999999999999877766554 3347899999999999999987
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeeEEEEeCCCCCCC--C
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPE--N 625 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v 625 (1091)
++.|.+||++.+.....+.||. ..|+.+..+|+|.++++-+.|.++++||++. .+++..+.++.+.-. .
T Consensus 195 --dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 --DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred --cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 5569999999999999999999 9999999999999999999999999999875 344666766544322 3
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccc
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEA 705 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~ 705 (1091)
..++|+|++..+..|+.|..+++||......+..+++|...|++++| .|....+.+++.
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~F---------------------hp~e~iils~~s 328 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDF---------------------HPTEPIILSCSS 328 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeee---------------------cCCCcEEEEecc
Confidence 56789999999999999999999999999999999999999999999 666778888888
Q ss_pred cccccc
Q 001367 706 ENKSEV 711 (1091)
Q Consensus 706 d~~i~~ 711 (1091)
|++|.+
T Consensus 329 dk~i~l 334 (338)
T KOG0265|consen 329 DKTIYL 334 (338)
T ss_pred CceeEe
Confidence 888765
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=274.45 Aligned_cols=285 Identities=20% Similarity=0.287 Sum_probs=263.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|..+|+.+-|+|+-..+++++.|++|++||..+|+..+ .++||...|.+++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 67899999999999999999999999999999999998755 6889999999999999999 899999999999999
Q ss_pred CCC-CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 472 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
..+ .++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++-+...+.+|...+..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67888899999999999997764 69999999999999999999999999999999999999999999999976
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC---------------CCEEEEEeCCCeEEEEECCCCeeEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1091)
+.++++|-..++++...+..|+ .+|.+++|.|. ++++.+++.|++|++||+.++.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 6779999999999999999988 89999999763 25888899999999999999999999
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCC
Q 001367 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKE 695 (1091)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 695 (1091)
+.+|.. .|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-+++++|. .
T Consensus 330 L~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh---------------------~ 386 (406)
T KOG0295|consen 330 LVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH---------------------K 386 (406)
T ss_pred Eecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC---------------------C
Confidence 998866 79999999999999999999999999999999999999999999999984 4
Q ss_pred CCCccccccccccccccc
Q 001367 696 DVKPEISVEAENKSEVEK 713 (1091)
Q Consensus 696 ~~~~l~s~~~d~~i~~w~ 713 (1091)
+..++++|+-|.++++|.
T Consensus 387 ~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 387 TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCceEEeccccceeeeee
Confidence 445889999999999986
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=290.58 Aligned_cols=296 Identities=16% Similarity=0.248 Sum_probs=253.4
Q ss_pred CCchheeeecccCCCCcEEEEEcC-CCceEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCCCcc
Q 001367 321 DFPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1091)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~fsp-dg~~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 398 (1091)
-+|+..++++.||+..|+++.|.| .+ +||++|+.|+.|+||++.. ++++++ +.||..+
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~ 260 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKP 260 (503)
T ss_pred eccHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceehh-------------------hhcchhh
Confidence 368999999999999999999999 66 5999999999999999977 777765 7899999
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
|.+++|+++|..+.+++.|+.|++||+++|+++.. +. ....++++.|.||+.. .+++|+.|+.|+.||+++++.+
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHH
Confidence 99999999999999999999999999999987653 21 2346899999999954 7889999999999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee-ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
+++..|-+.|..+.|. +++..+++.+.|+.++||+.+....... .........++..+|++.++++-+. ++.|
T Consensus 336 qeYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i 409 (503)
T KOG0282|consen 336 QEYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYI 409 (503)
T ss_pred HHHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceE
Confidence 9999999999999994 5778999999999999999987766553 3334456778999999999998765 6778
Q ss_pred EEEecCCc---eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC-
Q 001367 558 VEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN- 633 (1091)
Q Consensus 558 ~iwd~~~~---~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~- 633 (1091)
.++.+... ...+.+.+|... +.-..+.|||||.+|++|+.||.+.+||.++-+++..+..+.. .+..+.|+|.
T Consensus 410 ~ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e 486 (503)
T KOG0282|consen 410 AIFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVE 486 (503)
T ss_pred EEEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCC
Confidence 88876532 334567777632 3456689999999999999999999999999999999988854 6889999994
Q ss_pred CCEEEEEECCCeEEEEE
Q 001367 634 GTLLAVIANENRIKILE 650 (1091)
Q Consensus 634 ~~~l~~~~~dg~i~iwd 650 (1091)
...+|+++.+|.|++|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 56899999999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=280.27 Aligned_cols=285 Identities=21% Similarity=0.298 Sum_probs=247.5
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.-+..|..|.|.|+|++ |++|+..|.+.+|+..+-... .++..|..+|+++.||++|.++
T Consensus 94 Kvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fnFE-------------------tilQaHDs~Vr~m~ws~~g~wm 153 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFNFE-------------------TILQAHDSPVRTMKWSHNGTWM 153 (464)
T ss_pred ccccceeeEEEcCCCce-eEeecccccEEEecCceeeHH-------------------HHhhhhcccceeEEEccCCCEE
Confidence 33448999999999996 589999999999997432211 1266799999999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEecc-ccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 490 (1091)
++|+.+|.|++|+..-... + .+.+| ...|++++|+|+.. .+++++.||+|+|||....+.-..+.+|.-.|.+
T Consensus 154 iSgD~gG~iKyWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 154 ISGDKGGMIKYWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred EEcCCCceEEecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 9999999999999876432 2 34444 48999999999888 7999999999999999999888889999999999
Q ss_pred EeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEE
Q 001367 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1091)
+.|+|.. .++++++.|..|++||.+++.++.++..|...|..+.|+|++++|++++. |..++++|+++.+.+..
T Consensus 228 vdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 228 VDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFT 301 (464)
T ss_pred eccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHH
Confidence 9998875 58999999999999999999999999999999999999999999999986 66799999999999999
Q ss_pred EecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEE
Q 001367 571 YQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1091)
+++|. ..+.++.|+|-.. .|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|..|++|+.|.++++|
T Consensus 302 ~r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 302 YRGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred hhcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeee
Confidence 99988 8999999999755 555689999999999986666655543 333579999999999999999999999999
Q ss_pred ECC
Q 001367 650 ETP 652 (1091)
Q Consensus 650 d~~ 652 (1091)
.-.
T Consensus 378 ~r~ 380 (464)
T KOG0284|consen 378 TRN 380 (464)
T ss_pred ccC
Confidence 754
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=307.76 Aligned_cols=294 Identities=21% Similarity=0.351 Sum_probs=255.7
Q ss_pred eeecccC-CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC--ceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 327 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 327 ~~~l~~h-~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.+++.+| ...|.++.|||||++ +++++.|+.+++|+..+++ .... +.+|...|.+++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 5666555 779999999999995 7999999999999997776 3332 578999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEee-CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
|+||++++++++.|++|+|||+. .+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 99999999999999999999994 434444 7889999999999999997 89999999999999999999999999
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--eeeecCCCC--cEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
+|...|.+++| ++++.+|++++.|+.|++||+.++.. ...+..+.. +++++.|+|++.++++++. ++.+.
T Consensus 286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999 56778999999999999999999883 344444443 5999999999999999986 66799
Q ss_pred EEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
+||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..+.++|..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 99999999999999988322245555668889999999999999999999999999988875 45788999999999999
Q ss_pred EEE--CCCeEEEEECC
Q 001367 639 VIA--NENRIKILETP 652 (1091)
Q Consensus 639 ~~~--~dg~i~iwd~~ 652 (1091)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 68999999754
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=275.85 Aligned_cols=292 Identities=16% Similarity=0.197 Sum_probs=250.6
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
++..|+..|.-+.||++|+|||+++.|.+..+|.+.....++..+++.+|..+|..+.||||.+ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 4788999999999999999999999999999999988777777788999999999999999999 89999999999999
Q ss_pred eCCCCceeEEec-CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC-CCCcEEEEEEcCCCCEEEEEe
Q 001367 471 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCG 548 (1091)
Q Consensus 471 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~ 548 (1091)
|+.+|.+.+.+. ++...+.+++|. +||..+++|+.|+.+..||++... ...+.+ ....|.+++.++||+++++.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~--pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWC--PDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEc--cCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999988774 356788999994 577899999999999999987543 222332 234689999999999999887
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceE
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1091)
. +..|++++..+.........+ .+|++++.+.+++++++.-.+..+.+||++..+.+..+.++.....+..-
T Consensus 374 ~----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 374 V----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred c----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence 6 556999998877665444443 58999999999999999999999999999988888888777654455555
Q ss_pred EEcc-CCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 629 CFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 629 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
+|.- +..++++|+.|+.|+||+..+++.+..+.||...|++++++|. +...+++++.||
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~--------------------~p~m~ASasDDg 505 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA--------------------DPEMFASASDDG 505 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC--------------------CHHHhhccCCCC
Confidence 6665 5589999999999999999999999999999999999999753 456789999999
Q ss_pred cccccccc
Q 001367 708 KSEVEKPL 715 (1091)
Q Consensus 708 ~i~~w~~~ 715 (1091)
+||+|...
T Consensus 506 tIRIWg~~ 513 (519)
T KOG0293|consen 506 TIRIWGPS 513 (519)
T ss_pred eEEEecCC
Confidence 99999865
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=264.38 Aligned_cols=294 Identities=14% Similarity=0.229 Sum_probs=257.7
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
++.+|.+.|.|+++.|-..++++|+.|++|+|||+.+|+... ++.||...|..+++|+--. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 478999999999999999999999999999999999996443 7889999999999999877 89999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
|++..+.++.+.||-..|++++.+|.- ..|++|+.|.++++||+++......+.+|..+|.++.+.|-+..+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999998765 58999999999999999999999999999999999999998888999876
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
|.+|++||+..|+....+..|. ..+.+++.+|....+++++.| .|+-|++..|..+..+..+.. .+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeee
Confidence 7789999999999999988877 899999999998888888876 589999999999988776655 5888888
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
+.|+ ++++|+++|.+.+||.+++..++....... | |+
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vq-----------------------------p-------GS------ 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ-----------------------------P-------GS------ 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCccccccccccc-----------------------------C-------Cc------
Confidence 8876 788999999999999998865554321100 0 00
Q ss_pred cccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecC
Q 001367 711 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 763 (1091)
Q Consensus 711 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~ 763 (1091)
......|.+.+|...|..|+++..|.+|++|.-+
T Consensus 406 -------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 -------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred -------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 1145678889999999999999999999999743
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-28 Score=260.71 Aligned_cols=549 Identities=16% Similarity=0.162 Sum_probs=375.4
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCC-CccEEEEEECCCCCE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSL 410 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~ 410 (1091)
--..+|.++|||.+.+ .||.+-.+|.|.||++..+-... .++.++ ...|.+++|+ ++.+
T Consensus 23 ~~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~R 82 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGR 82 (691)
T ss_pred eeccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCe
Confidence 3445999999999988 47999999999999998754332 224444 5789999999 5667
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE--EecCCCcce
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGAPV 488 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~v 488 (1091)
|.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|+.||.+..++...++... .|....+.|
T Consensus 83 LFS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv 157 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV 157 (691)
T ss_pred EEeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence 8888899999999999986544 5667788999999999998 78889999988888887776653 345566889
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-----C---CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----A---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
.++.| .+++..+++|+.||.|++||...+....... . ...-|.++.|-.++ .|+++ |..|.|.+|
T Consensus 158 Lslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg----DS~G~V~FW 230 (691)
T KOG2048|consen 158 LSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG----DSAGTVTFW 230 (691)
T ss_pred EEEEe--cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe----cCCceEEEE
Confidence 99988 4566789999999999999999888776221 1 12246777777555 45555 447889999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--EEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
|...+.+++.+..|. ..|.+++..++++++++++.|+.|.-+...+.+. +.......+...+.+++..++ .++
T Consensus 231 d~~~gTLiqS~~~h~---adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~ 305 (691)
T KOG2048|consen 231 DSIFGTLIQSHSCHD---ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALI 305 (691)
T ss_pred cccCcchhhhhhhhh---cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEE
Confidence 999999999888887 8999999999999999999999999988776533 222222222336889998876 899
Q ss_pred EEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccC
Q 001367 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFAR 718 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~ 718 (1091)
+|+.|.++.+-.....+.. .|.... ..|.+.... ....+.+..-..+..+.+|.+....
T Consensus 306 sgG~d~~l~i~~s~~~~~~----~h~~~~----~~p~~~~v~-------------~a~~~~L~~~w~~h~v~lwrlGS~~ 364 (691)
T KOG2048|consen 306 SGGRDFTLAICSSREFKNM----DHRQKN----LFPASDRVS-------------VAPENRLLVLWKAHGVDLWRLGSVI 364 (691)
T ss_pred ecceeeEEEEccccccCch----hhhccc----cccccceee-------------cCccceEEEEeccccccceeccCcc
Confidence 9999999888655432111 111000 000000000 1112233333344666777765431
Q ss_pred Cc------ccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceee
Q 001367 719 PS------ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV 792 (1091)
Q Consensus 719 ~~------~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1091)
.. ....+.. .....|.+.+.||+|+.++.+. -...++|.+..... +++-.+.
T Consensus 365 ~~g~~~~~~Llkl~~---k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~-----------vk~~~v~------- 422 (691)
T KOG2048|consen 365 LQGEYNYIHLLKLFT---KEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDPN-----------VKVINVD------- 422 (691)
T ss_pred cccccChhhheeeec---CCccceeeeccCCCCCEEEEee-ccceEEEEeccCcc-----------eeEEEec-------
Confidence 11 1111211 2356789999999999655544 44677777654221 0000000
Q ss_pred ecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCce--eEEEec--CCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001367 793 NDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK--TILTIM--PPSPTATSLAFNPHDNNVIAIGMDDST 866 (1091)
Q Consensus 793 ~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~--~~~~~~--~~~~~i~~l~~s~~~~~~la~g~~dg~ 866 (1091)
..+ ........+.|+-|+..++..+ ...+.+++.++.. .+..+. .....|+.++.|| +|++||+.+.+|.
T Consensus 423 -~~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~ 498 (691)
T KOG2048|consen 423 -DVP--LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQ 498 (691)
T ss_pred -cch--hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEeccce
Confidence 000 1334567788888888887776 4778888877543 333332 2456899999999 9999999999999
Q ss_pred EEEEeccCcceeeeeccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeec---cCCCcCCCCCceEEE
Q 001367 867 ILIYNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT---PDGVMTLAPSETHIQ 942 (1091)
Q Consensus 867 i~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~i~~l~ 942 (1091)
|.+|++.+++.......-...|++++|+| +.+.|+.+..++.+.-+|++............ +.........+..+.
T Consensus 499 I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gis 578 (691)
T KOG2048|consen 499 IFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGIS 578 (691)
T ss_pred EEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEE
Confidence 99999998875444434447899999995 66789999999999999995433221111111 111111113678889
Q ss_pred EcCCCCEEEEEe-cCeEEEEEcC
Q 001367 943 FHKDQTRFLLVH-ETHLAIYEAE 964 (1091)
Q Consensus 943 fs~dg~~la~~~-d~~i~vwd~~ 964 (1091)
|+|......... .+-+.+.|..
T Consensus 579 fd~~n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 579 FDPKNSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred eCCCCccEEEEEcCcEEEEEecC
Confidence 988777666543 3456666643
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-31 Score=246.59 Aligned_cols=292 Identities=16% Similarity=0.223 Sum_probs=237.2
Q ss_pred ccccccEEEEEEecC-CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001367 730 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 808 (1091)
Q Consensus 730 ~~~~~~i~~~~~s~d-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 808 (1091)
.+|.+++..++|+|. |..|++++.|..+++|+..... -| .....+. .+|...|+++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~-------~ck~vld-~~hkrsVRsvA 68 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SW-------TCKTVLD-DGHKRSVRSVA 68 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cE-------EEEEecc-ccchheeeeee
Confidence 458889999999999 8889999999999999865210 01 1111122 26999999999
Q ss_pred ecCCCCEEEEEe-CCeEEEEEcc--CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc---ceeeeec
Q 001367 809 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE 882 (1091)
Q Consensus 809 ~s~dg~~la~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~---~~~~~l~ 882 (1091)
++|.|++||+++ |.++.||.-. ..+++.++.+|...|.+++|++ +|.+||+++.|++|.||.+..+ ++...|.
T Consensus 69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999 9999999865 4578899999999999999999 9999999999999999999854 5788999
Q ss_pred cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEE
Q 001367 883 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI 960 (1091)
Q Consensus 883 ~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~v 960 (1091)
+|...|..+.|+|...+|+|+|.|.+|++|+-. ... ..+.+.+.+|.. .|.+++|++.|..|++ +.|++++|
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd---W~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD---WECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCC---eeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEe
Confidence 999999999999999999999999999999887 333 567888888886 7999999999999998 57789999
Q ss_pred EEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCC
Q 001367 961 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1040 (1091)
Q Consensus 961 wd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1040 (1091)
|...+ .+..-|.+.+..+.|. ...|++++.|+.|+++.-..+-.-..+. ......+.|...|. ++.|.|.
T Consensus 222 w~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~-l~~~~~~aHe~dVN--sV~w~p~ 291 (312)
T KOG0645|consen 222 WRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN-LLAKKEGAHEVDVN--SVQWNPK 291 (312)
T ss_pred eeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH-HHHhhhcccccccc--eEEEcCC
Confidence 98652 2344578899999998 4479999999999999876431111111 11222334566666 6789995
Q ss_pred CCCeEEEEecCCcEEEEecC
Q 001367 1041 KPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1041 d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
..++|++|++||.|.+|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 57899999999999999974
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=293.75 Aligned_cols=264 Identities=14% Similarity=0.201 Sum_probs=229.2
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccc---------eeeccCCccccCCCCCceeeecCCCCCCCC
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE---------ATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 802 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1091)
....+.+..|++|+..++.+..|..|++|.+...+...... ..+.......|..++..... + .+|.+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L--~GH~G 452 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--L--YGHSG 452 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--e--ecCCC
Confidence 34578899999999988888899999999998543211111 11112234445444442222 2 36999
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee
Q 001367 803 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l 881 (1091)
+|....|+|+.++|++++ |+++|+|.+.+..++..+++|..+|..+.|+| -|.++|+++.|++.++|......+++.+
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence 999999999999999999 79999999999999999999999999999999 8999999999999999999999999999
Q ss_pred ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEE
Q 001367 882 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI 960 (1091)
Q Consensus 882 ~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~v 960 (1091)
.||.+.|.|+.|+|+..|+|+||.|.+|++||+.+|. .++.+.||.. +|.+++|||+|++||+ +.|+.|.+
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEE
Confidence 9999999999999999999999999999999999965 5777788887 9999999999999999 58899999
Q ss_pred EEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 961 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 961 wd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
||+.++..+.. +.+|.+.|.++.||.||..||+|+.|.+|++||+..-
T Consensus 604 WDl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999988 4578999999999999999999999999999998754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=282.44 Aligned_cols=287 Identities=25% Similarity=0.412 Sum_probs=254.0
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+++.+|.++|++++|+|+++ ++++|+.||.|.+|++.+++.... +.+|...+..+.|+|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD 62 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence 56789999999999999998 678888999999999998875543 5678899999999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
+++|++++.++.|++|++.+++... .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999999999999999875444 5678888999999999977 7888888999999999999999999999999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
+.++++++. +.++++++.+|.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+.+||+.+++.
T Consensus 138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence 999999654 568888888999999999988888888888889999999999999988875 56799999999888
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
+..+..+. ..+.++.|+|++.++++++.+|.|++|++.+++....+..+. ..+.+++|+|+++++++++.|+.++
T Consensus 212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEE
Confidence 88887666 789999999998888888889999999999998888887554 3689999999999999999999999
Q ss_pred EEE
Q 001367 648 ILE 650 (1091)
Q Consensus 648 iwd 650 (1091)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 995
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=270.82 Aligned_cols=280 Identities=16% Similarity=0.220 Sum_probs=235.3
Q ss_pred CCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccc
Q 001367 623 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEIS 702 (1091)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s 702 (1091)
..|..+.|.|+|+.|++|+..|.+.+|+...-.--..+..|..+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~------------------------------------ 140 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP------------------------------------ 140 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc------------------------------------
Confidence 36889999999999999999999999997533222233444443
Q ss_pred cccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccc
Q 001367 703 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 782 (1091)
Q Consensus 703 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 782 (1091)
|+++.|+++|.+++++..+|.|++|+...+.. +..
T Consensus 141 ---------------------------------Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV------------k~~ 175 (464)
T KOG0284|consen 141 ---------------------------------VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV------------KII 175 (464)
T ss_pred ---------------------------------ceeEEEccCCCEEEEcCCCceEEecccchhhh------------HHh
Confidence 45566667777777777777777776443211 000
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEE
Q 001367 783 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 861 (1091)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g 861 (1091)
...|...|++++|||+...+++++ ||+|+|||....+..+.+.+|.-.|++++|+| ...+||+|
T Consensus 176 --------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasg 240 (464)
T KOG0284|consen 176 --------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASG 240 (464)
T ss_pred --------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEc
Confidence 012568999999999999999998 69999999999998889999999999999999 78899999
Q ss_pred eCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEE
Q 001367 862 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 941 (1091)
Q Consensus 862 ~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 941 (1091)
+.|..|++||.++|+++.++.+|...|.++.|+|++++|+|+|.|..++++|+.+ .+.+...++|.. .+.++
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~~~r~Hkk---dv~~~ 312 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELFTYRGHKK---DVTSL 312 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHHHhhcchh---hheee
Confidence 9999999999999999999999999999999999999999999999999999996 335667778876 79999
Q ss_pred EEcCCCCEEEE--EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 942 QFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 942 ~fs~dg~~la~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
+|+|-..-|.+ |.||.|..|.+...+.+..+..+|...|++++|.|=|..|++|+.|.++++|.-
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99997665555 699999999999777888888899999999999999999999999999999964
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-32 Score=264.38 Aligned_cols=277 Identities=21% Similarity=0.311 Sum_probs=234.3
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
...+.|.|+++.. + .+++|..|++|+|||..+-.+++. +.||++.|.|+.|. .+.+
T Consensus 195 e~skgVYClQYDD-~--kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvi 250 (499)
T KOG0281|consen 195 ENSKGVYCLQYDD-E--KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVI 250 (499)
T ss_pred ccCCceEEEEecc-h--hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEE
Confidence 3566999999964 3 359999999999999999888765 88999999999985 5699
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc---eeEEecCCCcce
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEGHGAPV 488 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v 488 (1091)
++|+.|.+|+|||+++|++++ ++-+|...|..+.|+.. ++++++.|.+|.+||+.... +.+.+.||...|
T Consensus 251 isGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 251 VSGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 323 (499)
T ss_pred EecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence 999999999999999999887 67789999999999853 79999999999999998764 346678999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
+.+.| +.+++++++.|.+|++|++.+.+....+.+|...|.|+.+ .|+++++|+. +.+|++||+..|.++
T Consensus 324 NvVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 324 NVVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 393 (499)
T ss_pred eeecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHH
Confidence 99988 4469999999999999999999999999999999988775 5788888875 778999999999999
Q ss_pred EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE-------eCCCCCCCCceEEEccCCCEEEEEE
Q 001367 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
+.++||+ .-|.++.|. .+.+++|+.||+|++||+..+...... ....+...|..+.|. ...+++.+
T Consensus 394 RvLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsss 466 (499)
T KOG0281|consen 394 RVLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSS 466 (499)
T ss_pred HHHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEecc
Confidence 9999999 899999995 578999999999999999876433111 111222346666664 66899999
Q ss_pred CCCeEEEEECCCCCe
Q 001367 642 NENRIKILETPESNS 656 (1091)
Q Consensus 642 ~dg~i~iwd~~~~~~ 656 (1091)
.|.+|.|||..++..
T Consensus 467 HddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 467 HDDTILIWDFLNGPP 481 (499)
T ss_pred CCCeEEEEEcCCCCc
Confidence 999999999987643
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-30 Score=291.63 Aligned_cols=290 Identities=21% Similarity=0.304 Sum_probs=254.5
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC-C
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V 473 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~-~ 473 (1091)
|...|.++.|++||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+ .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 478999999999999999999999999999977662 12235679999999999999999 8999999999999999 5
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.+..++++.+|...|++++|++ +++++++|+.|++|++||+++++....+..|...|.+++|++++++|++++.
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC----
Confidence 6689999999999999999965 5589999999999999999999999999999999999999999999999865
Q ss_pred ceEEEEEecCCce--eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC-CCCceEEE
Q 001367 554 ESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICF 630 (1091)
Q Consensus 554 ~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~ 630 (1091)
++.|++||+.++. +...+.++.... .+.++.|+|++.++++++.|+.+++||+..+........+... ..+.....
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL 387 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence 7789999999999 567788777333 7999999999999999999999999999999999888877553 13344556
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccc-cccceeeeeccccccccccccCCcccCCCCCCCCCcccccc--ccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVE--AEN 707 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~--~d~ 707 (1091)
++.+.++++|+.|+.|++|+..++..+..+.+| ...+..+++ .+..+++++++ .|+
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~---------------------~~~~~~~~s~s~~~d~ 446 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS---------------------HPTENLIASSSFEGDG 446 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc---------------------CCCcCeeeecCcCCCc
Confidence 789999999999999999999999999999999 777777777 56677777776 688
Q ss_pred cccccccc
Q 001367 708 KSEVEKPL 715 (1091)
Q Consensus 708 ~i~~w~~~ 715 (1091)
.+++|..+
T Consensus 447 ~~~~w~~~ 454 (456)
T KOG0266|consen 447 LIRLWKYD 454 (456)
T ss_pred eEEEecCC
Confidence 89999754
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=238.35 Aligned_cols=268 Identities=20% Similarity=0.315 Sum_probs=237.2
Q ss_pred eeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEE
Q 001367 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 390 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1091)
.++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++ +..+|...|..++.+.|+. .+++|+.|..|.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 4478899999999999999999999999999999999998776 7889999999999999998 6999999999999
Q ss_pred EeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC--CceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
||+.+|+.++.|.+|.+.|+.+.| +++...+++|+.|..+++||.++. ++++.+......|.++..+ +..++++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~f--NeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRF--NEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEe--cCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 999999999999999999999999 556689999999999999998764 4455666667788887764 4567777
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
+. +++++.||++.|+....+-+ .+|++++|+++++..++++.|+++++.|-.+|+++..+.+|.....-..
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 65 77799999999988777666 5699999999999999999999999999999999999988876555567
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeeccccccccc-ceeeeeccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPI 675 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~ 675 (1091)
++++.....+++|+.||.+++||+.....+..+..+... +..+++.|.
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence 788888889999999999999999999999988888877 788888654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=271.07 Aligned_cols=290 Identities=15% Similarity=0.192 Sum_probs=252.5
Q ss_pred eecCCCccEEEEEECC-CCCEEEEEECCCEEEEEEeeC-CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|++.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 4889999999999999 899999999999999999987 55555 7889999999999999999 799999999999
Q ss_pred EEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEe
Q 001367 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 548 (1091)
+||+++|+++..|. ....++++.|+|++ ...+++|+.|+.|+.||+++++....+..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999985 45678889998775 47899999999999999999999999999999999999999999999988
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eEEEEeCCCCCCCC
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDAGGGLPEN 625 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~v 625 (1091)
. +..+++|+...+..+....... .....++..+|+++++++-+.|+.|.++.+...- ....+.+|......
T Consensus 362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 6 5579999999887766655444 3567889999999999999999999999865432 22344444433445
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccc
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEA 705 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~ 705 (1091)
..+.|||||.+|++|..||.+.+||.++.+.+..++.|..++..+.|+|. ....+++++.
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~--------------------e~Skvat~~w 495 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV--------------------EPSKVATCGW 495 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC--------------------CcceeEeccc
Confidence 78999999999999999999999999999999999999999999999753 3456889999
Q ss_pred cccccccc
Q 001367 706 ENKSEVEK 713 (1091)
Q Consensus 706 d~~i~~w~ 713 (1091)
+|.|++|+
T Consensus 496 ~G~Ikiwd 503 (503)
T KOG0282|consen 496 DGLIKIWD 503 (503)
T ss_pred CceeEecC
Confidence 99999996
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=242.66 Aligned_cols=289 Identities=16% Similarity=0.210 Sum_probs=254.4
Q ss_pred eecccCCCCcEEEEEcC---CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 328 QTLIEGSSSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fsp---dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+-.||+.+|-.++||| +| ++|++++.||.-.+-+=.||.-+.+ +.||.+.|.+..+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 34589999999999985 77 5899999999999999999998876 8899999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-eeEEecC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~ 483 (1091)
+.+..+.|+++.|-+.+|||.-+|..+.. -.|..-|.+++|+.|.+ +|++|+.+..++|||++..+ +...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhs----f~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHS----FEHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhh----hhhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 99999999999999999999999987763 25888999999999999 79999999999999998654 5678899
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
|.+.|..+.|.. ..+.+++.+.|++||+||.+++.....+.. ..++.++.++++|++|..+.. +.|..||..
T Consensus 142 htg~Ir~v~wc~--eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~g-----ssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCH--EDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYG-----SSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEec--cCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecC-----ceeEEeccc
Confidence 999999999864 336788889999999999999998887764 458899999999999988753 349999999
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE-eCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
+-.+++.+.... .|.+..++|+...+++|++|..++.||..+++.+..+ ..| ..+|.|+.|+|+|...++|+.
T Consensus 214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCC
Confidence 999988887654 7899999999999999999999999999999998886 433 458999999999999999999
Q ss_pred CCeEEEEECCCCCe
Q 001367 643 ENRIKILETPESNS 656 (1091)
Q Consensus 643 dg~i~iwd~~~~~~ 656 (1091)
||+|++|....++.
T Consensus 288 DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKT 301 (334)
T ss_pred CceEEEEEecCCCc
Confidence 99999999876543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=253.52 Aligned_cols=684 Identities=16% Similarity=0.144 Sum_probs=364.9
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.-+-.|.+|.+.|+.+.|||-...|||+|+.|..|+||.+..|-...- .-....+.+.+-.|.|+.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence 345678899999999999997767999999999999999985432210 0122235555678899999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC-CCceeEEecC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEG 483 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~ 483 (1091)
+|...-|...+..|+++|||+.+++... ++.+|...|.++.|+.||+ ++++++.|..|+|||.+ .++.++...+
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9977767777788999999999986554 7889999999999999999 89999999999999987 4678888888
Q ss_pred CCcce-EEEeecccCCceEEEEEecC----CeEEEEecCCCCce-eeecC-CCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 484 HGAPV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 484 ~~~~v-~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
|.+.- ..+.| -++-..|++.+.+ ..|++||.+..... ..+.. ....|.---|.||.++|+.++ .|+..
T Consensus 212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~ 286 (1012)
T KOG1445|consen 212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNK 286 (1012)
T ss_pred cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcce
Confidence 87642 22344 3444567776655 35899998764432 22222 223455566899999988876 35778
Q ss_pred EEEEecCCceeeE--EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceE-EEcc-
Q 001367 557 LVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFNK- 632 (1091)
Q Consensus 557 i~iwd~~~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s~- 632 (1091)
++.+.+...+..- .++..- .......++-|....-+..++ ..+++.+.....+.....-.. .+. .|+.
T Consensus 287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPR----ksyrdFH~D 358 (1012)
T KOG1445|consen 287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPR----KSYRDFHSD 358 (1012)
T ss_pred EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeecccccch----hhhhhhhhh
Confidence 8888877654321 111100 011122233333222122221 112222222221111000000 000 0111
Q ss_pred ---CCCEEEEEECCCeEEEEECCCCCeeccc------ccccc----cce------eeeecccccccccc-c--cCCcccC
Q 001367 633 ---NGTLLAVIANENRIKILETPESNSVDAA------GVLSD----NLR------KLSVNPISTVTGAG-I--ANGSVSN 690 (1091)
Q Consensus 633 ---~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~----~v~------~~~~~~~~~~~~~~-~--~~g~~~~ 690 (1091)
+..-...+..-| -|=..+++.++.. +.|.. .+. .-+|.+.....+.- . +.....
T Consensus 359 LfPeT~G~~p~~~ag---eWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~- 434 (1012)
T KOG1445|consen 359 LFPETRGAEPGCTAG---EWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSS- 434 (1012)
T ss_pred hCccccCCccCcCcc---ceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccc-
Confidence 000000000000 0100011000000 00000 000 00000000000000 0 000000
Q ss_pred CCCCCC--CCcccccccccccccccccccCCccc-ce--ee-cCCccccccEE---------------------------
Q 001367 691 EDPKED--VKPEISVEAENKSEVEKPLFARPSEC-QS--LL-LPSKVKANKIS--------------------------- 737 (1091)
Q Consensus 691 ~~~s~~--~~~l~s~~~d~~i~~w~~~~~~~~~~-~~--~~-~~~~~~~~~i~--------------------------- 737 (1091)
+.-|| .+.-+. ....+|-.+....+.... .. .. -...+...++.
T Consensus 435 -~~~Pd~~~qpaV~--~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~ 511 (1012)
T KOG1445|consen 435 -NNVPDVQEQPAVP--KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVV 511 (1012)
T ss_pred -cCCCccccCCCcC--cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCccccccccccccc
Confidence 00011 000000 000000000000000000 00 00 00000000000
Q ss_pred EEEEe---c----C--CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceee----ecCCCCCCCCCe
Q 001367 738 RLTYN---N----G--GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV----NDTTDSNSQEAV 804 (1091)
Q Consensus 738 ~~~~s---~----d--g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v 804 (1091)
.-+|- | . |..+-+ .++ +..-. ....+...-..+.-|.-..|..... ..+...+..-+-
T Consensus 512 ~P~~~ksvPe~~~~~~g~~~sa--t~~---v~~s~----s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg 582 (1012)
T KOG1445|consen 512 GPAFGKSVPEQPPVNFGKPISA--TNR---VPLSQ----SVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG 582 (1012)
T ss_pred CccccccCCCCCCcccCCCccc--ccc---ccccc----cccccceeeccchheeeccCccccchhhhhhhhcccccCCC
Confidence 00000 0 0 000000 000 00000 0000000000000011111110000 000000011111
Q ss_pred eEEEecCCCCEEEEE---eCCeEEEEEccCc-eeEEE-ec--CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc--
Q 001367 805 PCFALSKNDAYLFSA---SGGVISLYIVMTF-KTILT-IM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-- 875 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~---~dg~i~iwd~~~~-~~~~~-~~--~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~-- 875 (1091)
.+--|..+.+++|+- +.|.|.||++... +..-. +. .....|+.+.|.|.|...||++++||.|++|.+..+
T Consensus 583 EsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 583 ESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred ccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence 222344566667653 4789999998743 22211 11 134578999999999999999999999999998764
Q ss_pred -----ceeeeeccccCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCE
Q 001367 876 -----EVISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 949 (1091)
Q Consensus 876 -----~~~~~l~~h~~~V~~l~~spd-g~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 949 (1091)
+.-..+.+|...|+++.|+|- ...|++++.|-+|++||+.+.. ....+.||.. .|..++|||||+.
T Consensus 663 ~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~ 734 (1012)
T KOG1445|consen 663 PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRR 734 (1012)
T ss_pred CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcc
Confidence 344678899999999999994 5789999999999999999854 4455677776 8999999999999
Q ss_pred EEE-EecCeEEEEEcCCcceeeeeecCC-ccCEEEEEEeeCCCEEEEEEcC----CcEEEEeCCCCceEEEeecccccCC
Q 001367 950 FLL-VHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD----GTLSIHEASNLEVQCRILSTAYLRP 1023 (1091)
Q Consensus 950 la~-~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~v~fs~dg~~l~t~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~ 1023 (1091)
+|+ +.||+|+||+.++++....--.+- ..+-..|.|.-||+++++.+-| ..|.+||..+....-......-..
T Consensus 735 ~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva- 813 (1012)
T KOG1445|consen 735 IATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA- 813 (1012)
T ss_pred eeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc-
Confidence 999 899999999998876543222221 3455678899999999888776 458888877654221110000000
Q ss_pred CCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCCCcccCC
Q 001367 1024 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1070 (1091)
Q Consensus 1024 ~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~~~~~~ 1070 (1091)
. .++.=.|+++.+-+|++|-.|..|..|++....+..-.+.
T Consensus 814 ---p---s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~ 854 (1012)
T KOG1445|consen 814 ---P---SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLA 854 (1012)
T ss_pred ---C---ccccccccCCCceEEEecCCCceEEEEEecCCCceeeecc
Confidence 0 1122236666577899999999999999988776655443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=301.76 Aligned_cols=294 Identities=14% Similarity=0.172 Sum_probs=237.6
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 408 (1091)
+..|.+.|++++|+|+|+ ++|+|+.|+.|+|||+.+...... . .......+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence 456999999999999998 679999999999999864211000 0 000001122 346899999997 57
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC-CCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
.+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999876544 6789999999999997 677 8999999999999999999998888754 57
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCC-ceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc-
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1091)
|.++.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. ++.|++||+..+
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence 88888853 467899999999999999998765 455677888899999997 7788888875 677999999743
Q ss_pred -----eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC-----------CCCCCCCceEE
Q 001367 566 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC 629 (1091)
Q Consensus 566 -----~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~ 629 (1091)
..+..+.+|. ..+.+++|+|+++++++|+.|+.|++|+......+..+.. ..+...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677788877 7899999999999999999999999999876654433211 12223589999
Q ss_pred EccCCCEEEEEECCCeEEEEEC
Q 001367 630 FNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
|+|++..|++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=254.88 Aligned_cols=275 Identities=16% Similarity=0.250 Sum_probs=234.4
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
....|.|+.+ |...+++|..|++|+|||..+-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+|||+.+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3467888887 56789999999999999999987776 678999999999995 45 899999999999999999
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce---eeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
|+++.++-+|...|..+.|+ ..++++++.|.++.+||+.....+ ..+.+|...|..+.|+. ++++++++
T Consensus 267 ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC--
Confidence 99999999999999999984 249999999999999999876643 36778888999988854 58888875
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
+.+|++|++.+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD 409 (499)
T ss_pred --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence 7789999999999999999998 78888876 578999999999999999999999999998866 58899996
Q ss_pred cCCCEEEEEECCCeEEEEECCCCC---------eecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccc
Q 001367 632 KNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEIS 702 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s 702 (1091)
.+.+++|..||+|++||+..+. ++..+..|.+.|..+.| |...+++
T Consensus 410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF-----------------------D~fqIvs 464 (499)
T KOG0281|consen 410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF-----------------------DEFQIIS 464 (499)
T ss_pred --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee-----------------------cceEEEe
Confidence 6789999999999999998763 33445566667766655 4567889
Q ss_pred cccccccccccccccCCc
Q 001367 703 VEAENKSEVEKPLFARPS 720 (1091)
Q Consensus 703 ~~~d~~i~~w~~~~~~~~ 720 (1091)
++.|.+|-+||+..+.+.
T Consensus 465 ssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 465 SSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccCCCeEEEEEcCCCCcc
Confidence 999999999998754443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=267.91 Aligned_cols=285 Identities=23% Similarity=0.342 Sum_probs=253.2
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|..+|++++|+|++++|++++.++.|++|++.+++... .+..|...+..+.|+|+++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 66899999999999999999999999999999999876433 5678999999999999998 799999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+.+++.+..+..|...+.++.+++. +.++++++.+|.+++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9998889999999999999999654 568888888999999999988888888888889999999999988888763
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
++.+++||+.+++.+..+..+. ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..+.. .+.++.|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEc
Confidence 5569999999998888888766 7899999999999999999999999999999888887754433 68999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccc
Q 001367 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEV 711 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~ 711 (1091)
|++.++++++.+|.+++|+..++.....+..+...+.++++ +++++.+++++.|+.+++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~---------------------~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW---------------------SPDGKRLASGSADGTIRI 287 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEE---------------------CCCCCEEEEecCCCeEEe
Confidence 99888888888999999999988888888888888999988 677888999999999999
Q ss_pred cc
Q 001367 712 EK 713 (1091)
Q Consensus 712 w~ 713 (1091)
|+
T Consensus 288 w~ 289 (289)
T cd00200 288 WD 289 (289)
T ss_pred cC
Confidence 96
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=253.50 Aligned_cols=297 Identities=16% Similarity=0.224 Sum_probs=257.1
Q ss_pred CCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccE
Q 001367 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1091)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1091)
+.+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++.-.. .++.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 5688999999999999999999999965 469999999999999987762221 1277888999
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
+++.|.++++++++++.|+.+++|++...+... ++.||++.|+++.|..... .+++|+.|.+|++||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999876554 7889999999999998776 59999999999999999999887
Q ss_pred EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
++- ....+..|+.. ...+++|..|+.|++||.++.........++ .|+++..++++..+.+++. +..+.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 33445555553 3578999999999999999998888887766 9999999999999999976 667999
Q ss_pred EecCCceeeEEEecccc-cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 560 WNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 560 wd~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
.|+++.+....+..... .....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|.+++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 99999998888765431 12347889999999999999999999999999999999998877766799999999999999
Q ss_pred EEECCCeEEEE
Q 001367 639 VIANENRIKIL 649 (1091)
Q Consensus 639 ~~~~dg~i~iw 649 (1091)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999998
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=241.59 Aligned_cols=289 Identities=16% Similarity=0.207 Sum_probs=251.2
Q ss_pred CCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccce-----eEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-----QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~-----~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
+..+.+.|..|||||+||++|+.||.|.+||..+|+..+. .-.+--+..+|.|+.||.|.. ++++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence 5667899999999999999999999999999999875332 112345778999999999999 899999999999
Q ss_pred EEeCCCCceeEEec-CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 469 VWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 469 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
||.+.+|.|++.|. .|...|+++.| +.|+..+++++.|.++++--+.+++....+.+|..-|+...|++||.+++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEE--ccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 99999999999996 89999999999 5577899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCC-CCCCC
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPEN 625 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v 625 (1091)
+. +++|++|+..+.+++.+|+... ...+|.++-.-|.+ .+++++...++|+|.++. |+.+..+.... .....
T Consensus 367 Ss----DgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 367 SS----DGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred cC----CccEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 86 7779999999999999988654 34678887777654 678888899999999984 67777775432 22346
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccc
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEA 705 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~ 705 (1091)
.+++.+|.|.++++.+.|+.++.|...++..-..+..|...+..++- .|..+.+++-+.
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~H---------------------HPHqNllAsYsE 499 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTH---------------------HPHQNLLASYSE 499 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccccc---------------------Ccccchhhhhcc
Confidence 67889999999999999999999999999999999988888877766 677888999999
Q ss_pred cccccccc
Q 001367 706 ENKSEVEK 713 (1091)
Q Consensus 706 d~~i~~w~ 713 (1091)
||.+++|.
T Consensus 500 DgllKLWk 507 (508)
T KOG0275|consen 500 DGLLKLWK 507 (508)
T ss_pred cchhhhcC
Confidence 99999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=291.51 Aligned_cols=322 Identities=14% Similarity=0.178 Sum_probs=247.4
Q ss_pred CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCC----ccc
Q 001367 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA 431 (1091)
Q Consensus 356 dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~ 431 (1091)
+|-+++|+..+.+..... +..-+..|...|.+++|+|+|++||+|+.|+.|+||++.+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 577888887765443210 11114569999999999999999999999999999998642 111
Q ss_pred c-eeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCe
Q 001367 432 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 510 (1091)
Q Consensus 432 ~-~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 510 (1091)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.||.
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 111233 3467999999886433 7999999999999999999999999999999999999753 5579999999999
Q ss_pred EEEEecCCCCceeeecCCCCcEEEEEEc-CCCCEEEEEecCCCCceEEEEEecCCce-eeEEEecccccccceEEEEEcC
Q 001367 511 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 511 i~iwd~~~~~~~~~~~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
|++||+.+......+..+ ..+.++.|+ +++.++++++. ++.|++||+.++. .+..+.+|. ..|.++.|.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV- 670 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence 999999988777766644 578899995 57899999875 6779999998765 456667766 889999997
Q ss_pred CCCEEEEEeCCCeEEEEECCCC------eeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccc
Q 001367 589 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
++.++++++.|++|++||+..+ ..+..+..|.. .+..++|++++++|++|+.|+.|++|+............
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6789999999999999999743 45666766543 678899999999999999999999999765432211110
Q ss_pred c-cccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEE
Q 001367 663 L-SDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 741 (1091)
Q Consensus 663 ~-~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 741 (1091)
. ...+ ..+ ....+...|.+++|
T Consensus 749 ~~~~~~-------------------------------------------------------~~~--~~~~~~~~V~~v~w 771 (793)
T PLN00181 749 KTIDPV-------------------------------------------------------SGL--EVDDASQFISSVCW 771 (793)
T ss_pred ccCCcc-------------------------------------------------------ccc--ccCCCCcEEEEEEE
Confidence 0 0000 000 00124567999999
Q ss_pred ecCCCeEEEeecCceEEEeec
Q 001367 742 NNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 742 s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
++++..+++++.+|.|++|++
T Consensus 772 s~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 772 RGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999985
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=249.30 Aligned_cols=286 Identities=19% Similarity=0.235 Sum_probs=242.6
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
...+|. .|++++|||...+=+|+.+. -.+.||+..+...+.. +......|.++.|-.||
T Consensus 22 ~~ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 22 VHKEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDG 80 (487)
T ss_pred cccccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCC
Confidence 345666 99999999966543344332 6799999888766643 33456789999999999
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
++||+|...|.|+|+|..+...++ .+.+|+.+|..+.|+|++.. .+++|+.|+.+++||+.+......+.+|+.-|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence 999999999999999977654455 57899999999999999887 89999999999999999999877999999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce-e
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-I 567 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~ 567 (1091)
.+.+++|. ++.++++|+.||.|++||.+........-.|+.+|.++.+-|.|..++++++ +.+++||+.+|. .
T Consensus 157 R~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 157 RCGDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQL 230 (487)
T ss_pred EeeccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCcee
Confidence 99999876 4579999999999999999998766666678899999999999999999874 359999999654 4
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
+..+..|. ..|+|+++..++..|++++-|+.+++||+.+.+.+..+...+ +|.+++.+|++..++.|..+|.+.
T Consensus 231 l~~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 231 LTSMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred hhhhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceee
Confidence 44444455 899999999999999999999999999999999999887664 489999999999999999999887
Q ss_pred EEEC
Q 001367 648 ILET 651 (1091)
Q Consensus 648 iwd~ 651 (1091)
+-+.
T Consensus 305 ~rr~ 308 (487)
T KOG0310|consen 305 IRRR 308 (487)
T ss_pred eehh
Confidence 7643
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=231.48 Aligned_cols=316 Identities=16% Similarity=0.193 Sum_probs=242.4
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.....|..|+.++.+.+|||||. |+|+|+.|.+|+|.|++..-... ....+..-....+..--.++..|...|+++.|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred cceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhccCcccceee
Confidence 34456889999999999999998 88999999999999987210000 00000000000110112247789999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe---
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--- 481 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--- 481 (1091)
+|....|++|+.|++|+++|+......+..+.+ ....+|.++.|+|.|. +|+.|....++++||+.+-++...-
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcc
Confidence 999999999999999999999865443333233 3456899999999999 7888998899999999998876543
Q ss_pred cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-CC-CCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-AP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
..|.+.|+++.++ +.+.+.++++.||.|++||--+.+++..+. .| +..|.+..|..+|+++++.+. +..+++
T Consensus 258 ~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkL 331 (430)
T KOG0640|consen 258 DQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKL 331 (430)
T ss_pred cccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeee
Confidence 4689999999985 566899999999999999987777776553 23 347899999999999999875 778999
Q ss_pred EecCCceeeEEEecccccc--cceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCE
Q 001367 560 WNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1091)
|.+.+++.+..+.|-...+ .--+...|+....+++.-. ..+.+.-||.+++..+..+... +...+..+.-||.+.-
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slg-Hn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLG-HNGAVRWIVHSPVEPA 410 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccC-CCCCceEEEeCCCCCc
Confidence 9999999999998753111 1122345676777777744 4577999999998877766653 3457899999999999
Q ss_pred EEEEECCCeEEEEECC
Q 001367 637 LAVIANENRIKILETP 652 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~ 652 (1091)
+.+++.|..+++|--.
T Consensus 411 FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYRR 426 (430)
T ss_pred eeeecccceeeeeeec
Confidence 9999999999999643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=213.87 Aligned_cols=312 Identities=17% Similarity=0.207 Sum_probs=239.7
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
..++.+|.... .|.+++|+|.|. |.|+|+...+.+|.....-..++. ..+.....+....+.-+.|.+.|.|.+
T Consensus 23 f~~i~~l~dsq-airav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 23 FEAINILEDSQ-AIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred eEEEEEecchh-heeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEE
Confidence 45667776654 999999999998 779999999999886543221110 000000001111222567999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEee--CCcccceeEEEeccccCeeEEEEcCC---CCceEEEEee-CCCcEEEEeCCCCce
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSR 477 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~ 477 (1091)
|||+|++||+|++|.+|++.-.. +......-.++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 99999999999999999986554 43334444578889999999999654 222 566654 578899999999999
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC-------CCCcEEEEEEcCCCCEEEEEecC
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
.+.+.+|++.|.++.- -++.++++|+.|.+|++||++-......+.. ....|.+++..|.|+.|+++..
T Consensus 176 ~~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 9999999999988752 2567999999999999999988777665432 2247899999999999999876
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCCCCCCceE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRI 628 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v 628 (1091)
+....+||++.++.++.+..|. ..|.++.|+|...++++++.|..|++-|+... ..+..+....+...+..+
T Consensus 252 ---dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~ 325 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQC 325 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEE
Confidence 5669999999999999999988 99999999999999999999999999998642 111111122233457889
Q ss_pred EEccCCCEEEEEECCCeEEEEECC
Q 001367 629 CFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.|+|..--+++.+.|.++.+|.+.
T Consensus 326 rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 326 RWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EecCccceeeeccCcceEEEeccC
Confidence 999998889999999999999764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=271.46 Aligned_cols=307 Identities=19% Similarity=0.246 Sum_probs=248.1
Q ss_pred cCCCCcEEEEEcCCCceEEEEEc--CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~--~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
.+...|..++.+|||. .+|||+ .||.++||+...=-... ..++.. .+.....+..|.+.|+|+.|||||+
T Consensus 11 H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred cCCeeEEEEEecCCce-eEecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence 3445789999999998 569999 89999999965311000 001110 0111123667999999999999999
Q ss_pred EEEEEECCCEEEEEEeeC----------C-----cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 410 LLGVAYSKHIVQLYAYHG----------G-----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~----------~-----~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
|||+|++|+.|.||+... | +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence 999999999999999883 0 11234557889999999999999999 999999999999999999
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC------CcEEEEEEcCCCCEEEEEe
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCG 548 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~i~~~~~s~d~~~l~~~~ 548 (1091)
.+.+..+.+|...|..+.| +|-|+++++-+.|++|++|+...-.....+..+- .-+..+.|||||++|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999 4567899999999999999977655555444332 2477899999999999887
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC-----CC------------EEEEEeCCCeEEEEECCCCe
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~------------~l~~~s~dg~i~iwd~~~~~ 611 (1091)
.-..+...+.|.+-.+.+.-..+.||. .++.++.|+|. .+ .+++|+.|+.|.||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 766677889999998888889999999 89999999973 11 45669999999999998888
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
++.....-.. ..|..++|+|||..|++++.||+|.++.+...
T Consensus 316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 7766543222 36899999999999999999999999998754
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=222.67 Aligned_cols=279 Identities=16% Similarity=0.239 Sum_probs=241.3
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 406 (1091)
+.+.+|...|.+|+|+-+|.+ ||+|+.|+++.+|++..++..... ...+|.+.|-.++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCC
Confidence 667899999999999999985 699999999999999988655431 2678999999999998
Q ss_pred CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
...++++++.|.+|++||+..+++... .....+ =..+.|+|+|+ +++.++.|..|.+.|.++.+.+...+ ...
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~---i~~~~e-ni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~ 148 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTAR---IETKGE-NINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF 148 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEE---eeccCc-ceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence 678999999999999999999987653 222223 34589999999 89999999999999998887776554 445
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
.+..++|+. ++.+++.....|.|.|-.+...+....+..|.....|+.|+|+|+++++|+. +..+.+||+..--
T Consensus 149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI 222 (313)
T ss_pred eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence 677788863 4457777777899999999999999999999999999999999999999987 6779999999999
Q ss_pred eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1091)
+++.+..+. -+|+.+.|+-+|++|++||+|..|-|=++++|..+..++..+. ...|+|+|...+||.+.+|
T Consensus 223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 999999888 8999999999999999999999999999999999999987654 6899999999999988775
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=231.75 Aligned_cols=286 Identities=14% Similarity=0.183 Sum_probs=253.8
Q ss_pred ecCCCccEEEEEECC---CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 392 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 392 ~~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
..||+.+|..++||| +|-+|++++.|+.=.+-+-++|.-+. ++.||.+.|+......+.. ..++++.|=+.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence 678999999999996 89999999999988777777776665 7899999999999988877 689999999999
Q ss_pred EEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-eeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
|||.-+|..+++|. |...|.+++| +.|..+|++|+.++.++++|++..+. ...+..|.+.|..+.|....+.+++.
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999996 9999999999 55778999999999999999987654 55788999999999999999999887
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
.. ++.|++||.+++..++.+.... +|.++.++++|.++.++ ..+.|.+||..+..+++.+..+.. |.+
T Consensus 162 ad----d~tVRLWD~rTgt~v~sL~~~s----~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n---V~S 229 (334)
T KOG0278|consen 162 AD----DKTVRLWDHRTGTEVQSLEFNS----PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN---VES 229 (334)
T ss_pred cc----CCceEEEEeccCcEEEEEecCC----CCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc---ccc
Confidence 54 6679999999999999998744 89999999998765554 567899999999999998877644 788
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeeccc-ccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAE 706 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d 706 (1091)
..++|+...+++|+.|..++.||..++..+... ++|.++|.|+.| +|+|...++|+.|
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF---------------------SPdGE~yAsGSED 288 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF---------------------SPDGELYASGSED 288 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE---------------------CCCCceeeccCCC
Confidence 999999999999999999999999999988885 999999999999 8899999999999
Q ss_pred cccccccccccC
Q 001367 707 NKSEVEKPLFAR 718 (1091)
Q Consensus 707 ~~i~~w~~~~~~ 718 (1091)
|+||+|.....+
T Consensus 289 GTirlWQt~~~~ 300 (334)
T KOG0278|consen 289 GTIRLWQTTPGK 300 (334)
T ss_pred ceEEEEEecCCC
Confidence 999999976443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-28 Score=225.65 Aligned_cols=287 Identities=10% Similarity=0.089 Sum_probs=238.7
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
.|.||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||++.|.|+..+.+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence 4789999999999999998 889999999999999999999987 88999999999999999
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-----CCCcEEEEeCC-------CCc
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS 476 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~-------~~~ 476 (1091)
++|++|+.|.++++||+++|+++.. + ....+|..+.|+++|. +++.+. ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 9999999999999999999986653 2 3456899999999999 444433 34679999987 456
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
+...+..+...++.+.|.+ -+++|++|..||.|.+||++++.... ....|...|+.+.+++|..++++++. +.
T Consensus 139 p~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt 212 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT 212 (327)
T ss_pred ceEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence 6788888889999999965 45799999999999999999976655 45778889999999999999999986 66
Q ss_pred EEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCe--EEEEECCCC------------eeEEEEeCCCC
Q 001367 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV--IKIWDMNKV------------QLLTTIDAGGG 621 (1091)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~--i~iwd~~~~------------~~~~~~~~~~~ 621 (1091)
+-.+||..+-+.++++.... +|++.+++|-..+++.|+.... |.-=..+.| +.+..+.+|
T Consensus 213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-- 286 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-- 286 (327)
T ss_pred cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--
Confidence 68999999999999998754 9999999999888888653322 222222222 333444444
Q ss_pred CCCCceEEEccCCCEEEEEECCCeEEEEECCC
Q 001367 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
..+|++++|+|+|+..++|+.||.|++.-...
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 45899999999999999999999999986553
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=223.17 Aligned_cols=286 Identities=13% Similarity=0.167 Sum_probs=239.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||-...|+.+. ++.||.+.|+++...-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999998887665 7889999999999999999 89999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEec-----CCeEEEEecC-------CCCceeeecCCCCcEEEEEEc
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS 538 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~s 538 (1091)
|+++|+++..++ ...+|..+.|++ +|.+++.... .+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999986 567899999965 4455555543 3569999987 344566777788899999999
Q ss_pred CCCCEEEEEecCCCCceEEEEEecCCce-eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1091)
|-+++|++|.. ++.|.+||..+|. .+..-+.|. ..|+.++++++..++++++.|.+-++||..+-+.++++.
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999976 6669999999985 444445555 799999999999999999999999999999999999987
Q ss_pred CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC--------------CCCeecccccccccceeeeeccccccccccc
Q 001367 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP--------------ESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1091)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1091)
... ++++.+++|-...++.|+.....-+=... ..+.+...++|-++|++++|
T Consensus 230 te~---PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf----------- 295 (327)
T KOG0643|consen 230 TER---PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF----------- 295 (327)
T ss_pred ecc---cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEE-----------
Confidence 654 58999999988777777653332222211 12456677899999999999
Q ss_pred cCCcccCCCCCCCCCccccccccccccccccc
Q 001367 684 ANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 684 ~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|+|+..++|+.||.||+..++
T Consensus 296 ----------hPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 296 ----------HPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ----------CCCCcccccCCCCceEEEEEec
Confidence 7889999999999999986654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-26 Score=222.70 Aligned_cols=287 Identities=16% Similarity=0.248 Sum_probs=236.7
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
+..-.+.|.++.|+++|. ++++++.|.+++|||..+|+++.+ +..++-.|..+.|.....
T Consensus 10 f~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSN 69 (311)
T ss_pred cccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCc
Confidence 344566999999999999 557788999999999999998875 555677888999988887
Q ss_pred EEEEEEC--CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 410 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 410 ~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
.++.++. |.+|+.-++.+.+.++ -+.||...|+.++.+|-+. .+++++.|++|++||++..++...+.....+
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p 144 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP 144 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence 7777776 7899999999987776 6889999999999999998 8999999999999999988888777655555
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCC--Cceeeec---CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
+. +| ++.|-++|++...+.|++||++.- ++...+. ........+.|||||++++.+.. .+.+++.|.
T Consensus 145 i~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDA 216 (311)
T KOG1446|consen 145 IA--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDA 216 (311)
T ss_pred ce--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEc
Confidence 54 55 567778888888889999999874 2222333 33557899999999999998875 667999999
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
-+|..+..+.++......-...+|+||++++++|+.||+|.+|++++|..+..+... ....+.++.|+|.-..+++++
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~- 294 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS- 294 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC-
Confidence 999999999988744444467889999999999999999999999999999999875 234688999999876676664
Q ss_pred CCeEEEEECC
Q 001367 643 ENRIKILETP 652 (1091)
Q Consensus 643 dg~i~iwd~~ 652 (1091)
..+.+|-..
T Consensus 295 -s~l~fw~p~ 303 (311)
T KOG1446|consen 295 -SNLVFWLPD 303 (311)
T ss_pred -ceEEEEecc
Confidence 467777544
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=232.98 Aligned_cols=282 Identities=20% Similarity=0.366 Sum_probs=233.0
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC---C
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---G 408 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g 408 (1091)
-|.+.|.++... ++ .+.+|+.||.++|||.. |+.... +.||.++|.+++|--- .
T Consensus 103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS 159 (423)
T ss_pred cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence 578899999998 44 46899999999999965 555543 7899999998888643 3
Q ss_pred CEEEEEECCCEEEEEEeeCCccc-ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC--------------
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-------------- 473 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-------------- 473 (1091)
..+++++.|.++++|.++.++.. .......||...|.+++..++|. .+++|+.|.+|.||+.+
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence 46999999999999999887643 22223459999999999999999 89999999999999932
Q ss_pred -----------CCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCC
Q 001367 474 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 542 (1091)
Q Consensus 474 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~ 542 (1091)
++.++-++.||..+|.++.|.. ...+++++.|.+|+.||+.+++....+.. +..+.++.++|..+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc
Confidence 1234567889999999999965 35899999999999999999888776654 44789999999999
Q ss_pred EEEEEecCCCCceEEEEEecCCce---eeEEEecccccccceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCe-eEEEEe
Q 001367 543 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTID 617 (1091)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~s~dg~i~iwd~~~~~-~~~~~~ 617 (1091)
+|++++. +..+++||.+++. ..+.+.+|. +.|.++.|+|...+ |++++.|+++++||+++.+ ++..+.
T Consensus 314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999887 6679999998764 456677777 89999999998765 5669999999999999877 888888
Q ss_pred CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.|.. .|.++.|+. +..+++|+.|.+|+|+...
T Consensus 387 ~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 GHND--KVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCc--eEEEEeccC-CceEEeccCcceEEEeccc
Confidence 7754 688999985 6689999999999998643
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=261.71 Aligned_cols=310 Identities=15% Similarity=0.194 Sum_probs=223.5
Q ss_pred heeeecc-cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 325 ~~~~~l~-~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
...+.+. .|.+.||++.||+||+ +||+|+.||.|+||.+...+...... -+. .|... . +. ..+.+..+.
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~---~~~-~~~~~-~---~~-~~s~~~p~~ 326 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAE---GDS-SCMYF-E---YN-ANSQIEPST 326 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccc---ccc-chhhh-h---hh-hccccCccc
Confidence 3445566 9999999999999998 67999999999999997754422100 000 00000 0 00 000011111
Q ss_pred ECC-----CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 404 WSP-----DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 404 ~sp-----dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
-++ .....-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|.+|++|++...+|+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL 403 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL 403 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence 111 11111112222222221111111123444788999999999999876 6999999999999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
..|. |..-|+|++|+|. |.+++++|+.||.|+||++...+...- ..-..-|++++|.|||+..++|+. +|.++
T Consensus 404 ~~F~-HndfVTcVaFnPv-DDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~----~G~C~ 476 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPV-DDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTF----NGYCR 476 (712)
T ss_pred eEEe-cCCeeEEEEeccc-CCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEe----ccEEE
Confidence 9996 9999999999997 458999999999999999876554443 333468999999999999999987 67799
Q ss_pred EEecCCceeeEEEeccc-----ccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 559 EWNESEGAIKRTYQGLQ-----LQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~-----~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
+|+....+....+.-+. .....|+.+.|.|... .+++.+.|..|||+|.++..++..+.+......-....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 99998877766554322 1123799999987543 58889999999999999999998888765555556788999
Q ss_pred CCCEEEEEECCCeEEEEECCCC
Q 001367 633 NGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
||++|+++++|..|++|+....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCC
Confidence 9999999999999999998644
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=227.16 Aligned_cols=307 Identities=13% Similarity=0.197 Sum_probs=238.3
Q ss_pred CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccc
Q 001367 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEI 701 (1091)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~ 701 (1091)
...+.+.+|++||.++++|+.|..|+|+|++....... + +.+.
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~---~----------------------------------~em~ 154 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK---P----------------------------------KEMI 154 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc---h----------------------------------hhhc
Confidence 34688999999999999999999999999873311000 0 0000
Q ss_pred ccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCcc
Q 001367 702 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 781 (1091)
Q Consensus 702 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 781 (1091)
.+ .+.+...+......|...|..+.|.|....|++++.|++++++|+...... ...++
T Consensus 155 ~~--------------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK--------rA~K~ 212 (430)
T KOG0640|consen 155 SG--------------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK--------RAFKV 212 (430)
T ss_pred cC--------------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHH--------HHHHH
Confidence 00 111111222222348899999999999999999999999999998654220 00111
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeC-CeEEEEEccCceeEEEec---CCCCCeEEEEEcCCCCcE
Q 001367 782 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNV 857 (1091)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~~~~~ 857 (1091)
+ ....+|.++.|+|.|.+|++|.+ ..+++||+.+.++...-. .|.+.|+++.+++ .+++
T Consensus 213 ~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~l 275 (430)
T KOG0640|consen 213 F----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSL 275 (430)
T ss_pred h----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccE
Confidence 1 15678999999999999999997 789999999999876653 4778999999999 8999
Q ss_pred EEEEeCCCeEEEEeccCcceeeeec-cccC-CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCC
Q 001367 858 IAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 935 (1091)
Q Consensus 858 la~g~~dg~i~iwd~~~~~~~~~l~-~h~~-~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 935 (1091)
.++|+.||.|++||--+++++.++. +|.+ .|.+..|+.+|+++++.|.|..+++|.+.++.....-.=....|...
T Consensus 276 YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~-- 353 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK-- 353 (430)
T ss_pred EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh--
Confidence 9999999999999999999998875 4654 79999999999999999999999999999976433221111112221
Q ss_pred CCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 936 PSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 936 ~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
--+...|+....+++.- ..+.+.-||.+++..+..+..+|++.+..+.-||.+.-++|++.|..+++|--.
T Consensus 354 -~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 354 -HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred -hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 34567788888888873 457899999999999999999999999999999999999999999999999643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=254.60 Aligned_cols=288 Identities=12% Similarity=0.128 Sum_probs=222.7
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CCCEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 411 (1091)
|-..|....+++|+.. +++++.+..+..|+...|..+. +.............+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4457778888889763 4677777888889876664331 11111111111234789999999999999 89999
Q ss_pred EEEECCCEEEEEEeeCCcc----cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 412 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999987532 1234468899999999999998643 7999999999999999999999999999999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCc-EEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
|.+++|++ ++.+|++++.|+.|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999965 6789999999999999999998887777777654 45678999988888887665567889999998754
Q ss_pred -eeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 567 -IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 567 -~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
.......+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.
T Consensus 249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 333333222 24566678999999999887 59999999999998877655432 235678888884
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=226.80 Aligned_cols=285 Identities=20% Similarity=0.351 Sum_probs=235.1
Q ss_pred ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccC-CceEEEEEecCCeEEEEecC
Q 001367 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE-NIHFIFSISVDGKIKAWLYD 517 (1091)
Q Consensus 439 ~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~ 517 (1091)
-|.+.|.++... ++ .+++|+.||.+++|| ..|+....+.||.++|.++++...+ ....+++++.|.++++|-++
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 588889888887 45 799999999999999 7799999999999999988875433 23469999999999999988
Q ss_pred CCCcee----eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC-------------------------ceee
Q 001367 518 SLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-------------------------GAIK 568 (1091)
Q Consensus 518 ~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-------------------------~~~~ 568 (1091)
.+.... ...+|...|.++...++|..+++++. |.+|.+|+..+ +.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 766443 34588899999999999999999987 77899999221 2345
Q ss_pred EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEE
Q 001367 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1091)
..+.||. .+|.++.|++ ...+++++.|.+|+.||+.++..+..+.... ...++..+|..++|++|+.|..+++
T Consensus 254 vtl~GHt---~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 254 VTLEGHT---EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred EEecccc---cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceee
Confidence 5677777 9999999988 6789999999999999999999988876553 4688888888888888888888888
Q ss_pred EECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecC
Q 001367 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 728 (1091)
Q Consensus 649 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 728 (1091)
||.+++
T Consensus 327 ~DPR~~-------------------------------------------------------------------------- 332 (423)
T KOG0313|consen 327 WDPRTG-------------------------------------------------------------------------- 332 (423)
T ss_pred cCCCCC--------------------------------------------------------------------------
Confidence 875522
Q ss_pred CccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001367 729 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 808 (1091)
Q Consensus 729 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 808 (1091)
+|.
T Consensus 333 ---------------~gs-------------------------------------------------------------- 335 (423)
T KOG0313|consen 333 ---------------DGS-------------------------------------------------------------- 335 (423)
T ss_pred ---------------CCc--------------------------------------------------------------
Confidence 000
Q ss_pred ecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc-eeeeeccccCC
Q 001367 809 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEGHSKR 887 (1091)
Q Consensus 809 ~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-~~~~l~~h~~~ 887 (1091)
-...++.+|.+.|.++.|+|.+...|++|+.|+++++||+++.+ ++..+.+|.+.
T Consensus 336 ------------------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK 391 (423)
T KOG0313|consen 336 ------------------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK 391 (423)
T ss_pred ------------------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence 01123445777888888998788899999999999999999987 89999999999
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 888 VTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 888 V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
|.++.|+ ++.+++|||.|.+|+|+.-.
T Consensus 392 vl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 392 VLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999998 56799999999999998654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=260.91 Aligned_cols=304 Identities=17% Similarity=0.234 Sum_probs=238.0
Q ss_pred ccccEEEEEEecCCCeEEEee--cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEe
Q 001367 732 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 809 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 809 (1091)
+...|.++..+|||..+++++ .||.+++|+...-.. ....++..-...+.+. ..|.+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~m----~~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCTM----DDHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhheee----ccccCceeEEEE
Confidence 455689999999999999999 789999998653211 0111222111111111 249999999999
Q ss_pred cCCCCEEEEEeC-CeEEEEEccC------------------ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001367 810 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 870 (1091)
Q Consensus 810 s~dg~~la~~~d-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iw 870 (1091)
+|||++||+|+| +.|.||+... +++...+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 999999999995 6789998762 346778899999999999999 89999999999999999
Q ss_pred eccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEE
Q 001367 871 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 950 (1091)
Q Consensus 871 d~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~l 950 (1091)
+..+.+.+.++.+|.+.|..+.|.|-|+||||-+.|++|+||++.+..+.+ .+..+..+.........+.|||||++|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999987754332 444444444444568899999999999
Q ss_pred EEE--ec---CeEEEEEcCCcceeeeeecCCccCEEEEEEeeC--------C-----C----EEEEEEcCCcEEEEeCCC
Q 001367 951 LLV--HE---THLAIYEAEELTCLKQWFPISSVPISQATFSCD--------C-----R----MVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 951 a~~--~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~d--------g-----~----~l~t~~~dg~v~iwd~~~ 1008 (1091)
++. .. ..+.|.+-.+-+.-.. +.||.+++..++|+|. | . .+|+|+.|++|.||....
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 983 22 3688888766555555 5689999999999981 1 1 578999999999999977
Q ss_pred CceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1009 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
.+.+..+. +..+.. .+.++|+| ||..|.+++.||+|.+..+.+.+
T Consensus 314 ~RPl~vi~-------~lf~~S--I~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIH-------NLFNKS--IVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhh-------hhhcCc--eeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 66652222 111222 35789999 59999999999999999998765
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=259.03 Aligned_cols=284 Identities=17% Similarity=0.296 Sum_probs=248.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.|...+.+..|. ++ .+++|+.|++|++||..++..+... +.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~~------------------l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILTR------------------LVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEee------------------ccCCCCCceeEEEecCCCEE
Confidence 466689999999 55 3699999999999999999877541 77999999999999989999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
++|+.|.++++||..+|++.. .+.+|...|.++...+. ++++|+.|.+|++|++.++.++..+.+|.++|+++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999998777 78899999999987653 68889999999999999999999999999999999
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc-eeeEE
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT 570 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 570 (1091)
... +.++++|+.|++|++||+.+.+....+.+|...|.++.+.+. ..+++++. +..|++||+.+. +++..
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 884 569999999999999999999999999999999999988766 88888887 567999999999 99999
Q ss_pred EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEE
Q 001367 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
+.+|. ..+..+.+ .++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.+|.+++||
T Consensus 409 l~~h~---~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 409 LQGHT---SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hcCCc---cccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99988 66655544 5789999999999999999999999999874 22346666665 46789999999999999
Q ss_pred CCCCCeeccc
Q 001367 651 TPESNSVDAA 660 (1091)
Q Consensus 651 ~~~~~~~~~~ 660 (1091)
+.++.....+
T Consensus 481 l~~~~~~~~l 490 (537)
T KOG0274|consen 481 LRSGTLIRTL 490 (537)
T ss_pred cccCchhhhh
Confidence 9999777665
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=218.56 Aligned_cols=285 Identities=17% Similarity=0.245 Sum_probs=227.0
Q ss_pred cEEEEEcC--CCceEEEEEc-----CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC-C
Q 001367 337 PMSMDFHP--VQHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 408 (1091)
Q Consensus 337 V~~v~fsp--dg~~llasg~-----~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g 408 (1091)
=.++.||| +++..+|++. ..|++.|-++..++-+.. +.-+ .-+..+..++||++ .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCc
Confidence 36789999 4443334433 248899999875554432 1111 24578999999995 5
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
..+++++.||+++|||+... -.++..++.|...|.++.|++-.++ .+++++.|++|++|+...+.-++++.+|...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 67888999999999995543 3455578899999999999998776 67777999999999999999999999999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCC-CEEEEEecCCCCceEEEEEecCCc-e
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG-A 566 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~-~ 566 (1091)
+..+|+|. ...++++++.|+++++||++.......+..|...+.++.|+.-. ..+++++. ++.|+.||++.- .
T Consensus 151 y~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccc
Confidence 99999986 45699999999999999999988888899999999999999855 55556654 778999999864 4
Q ss_pred eeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eeEEEEeCCCCCCCCceEEEcc-CCCEEEEEECC
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLLAVIANE 643 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~d 643 (1091)
++..+.+|. -.|+.+.|+|.. ..|++++.|-+++|||...+ ..+.+...|.. .+..+.|++ ++.++|+.+.|
T Consensus 226 pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 226 PLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred cceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccc
Confidence 567777777 899999999975 46677999999999998854 34444444433 567788887 67899999999
Q ss_pred CeEEEEEC
Q 001367 644 NRIKILET 651 (1091)
Q Consensus 644 g~i~iwd~ 651 (1091)
+.++||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999983
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=235.85 Aligned_cols=284 Identities=15% Similarity=0.216 Sum_probs=233.3
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
..+.|.+++|+|...+=++.+..-.+.+|+...... ... + ......+.++.|-.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~--~--srFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKT--F--SRFKDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhh--H--HhhccceeEEEeec
Confidence 457899999999877666666666777776432110 000 0 12567899999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEE
Q 001367 812 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 890 (1091)
Q Consensus 812 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 890 (1091)
||+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.++.....+.+|++.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999998 5999999988877889999999999999999999999999999999999999999887789999999999
Q ss_pred EEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCccee
Q 001367 891 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 969 (1091)
Q Consensus 891 l~~spd-g~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~ 969 (1091)
.+|+|- +.+++|||.||.|++||+.... .+......| .+|..+.|-|.|..+|++....++|||+.+|...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999985 5689999999999999998743 223333333 2699999999999999999999999999976655
Q ss_pred eeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEe
Q 001367 970 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1049 (1091)
Q Consensus 970 ~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~ 1049 (1091)
......|...|+|+++..|++.|++++-||.|++||+.+-+.+..+.. +. .| ++++.+| |++.++.|.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~-----pv--Lsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----PG-----PV--LSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----cc-----ce--eeEEecC-CCceEEEec
Confidence 544555999999999999999999999999999999999888877761 22 23 4567788 579999999
Q ss_pred cCCcEEEEecCC
Q 001367 1050 TNGEVYVIEPNE 1061 (1091)
Q Consensus 1050 ~dg~v~~w~~~~ 1061 (1091)
.||.+.+=+...
T Consensus 299 snGlv~~rr~~~ 310 (487)
T KOG0310|consen 299 SNGLVSIRRREV 310 (487)
T ss_pred ccceeeeehhhc
Confidence 999988775543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-27 Score=238.25 Aligned_cols=309 Identities=18% Similarity=0.233 Sum_probs=241.3
Q ss_pred cCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCcc
Q 001367 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1091)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 398 (1091)
+..+|..+-..|.+|+..|.++++.|.|.+ +++|+.|.+|++||++....... .|+ .+.......
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~ 216 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQ 216 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCcccccc
Confidence 345677888889999999999999999985 59999999999999976543321 122 123345678
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCcc---------cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEE
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1091)
|.+++||+.|..|++.+....++|+|-...+. ++-...-+||...+++.+|+|+.+. .++|++.||+++|
T Consensus 217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRI 295 (641)
T ss_pred cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEE
Confidence 99999999999999999888999999765432 2223345689999999999999987 7999999999999
Q ss_pred EeCCCCc-eeEEe-----cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee---eecCCCC--cEEEEEEc
Q 001367 470 WDAVTGS-RTYSF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--GCTRMAYS 538 (1091)
Q Consensus 470 wd~~~~~-~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~--~i~~~~~s 538 (1091)
||+...+ .++.+ .+..-++++++| ++++..|++|..||.|.+|+........ .-..|.. .|+|+.||
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 9988653 23333 233456777778 6688899999999999999975543322 3334544 89999999
Q ss_pred CCCCEEEEEecCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCCEEEEEe------CCCeEEEEECCCCe
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQ 611 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s------~dg~i~iwd~~~~~ 611 (1091)
+||++|++-+. +..+++||++.. +++....+.. ....-+.++|+|+.+.|++|. ..|++++||..+..
T Consensus 374 ~dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 374 YDGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999998775 667999999865 4455544433 124556789999999999975 45789999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.+..+.... ..|..+.|+|.-+.|.+|+.||++++|--.
T Consensus 449 ~v~ki~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 TVYKIDIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEecCCC--ceEEEEeecchhhheeeecCCCceEEEECc
Confidence 998887663 368899999999999999999999998544
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=245.22 Aligned_cols=280 Identities=18% Similarity=0.264 Sum_probs=240.8
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
...-+.||..+ +||+|.. ..|.+|+..++..... ..-++..|+++.|+++|.+||+|.
T Consensus 179 Y~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~ 236 (484)
T KOG0305|consen 179 YLNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGT 236 (484)
T ss_pred hhhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEee
Confidence 34457888665 4577653 6899999999986543 222478999999999999999999
Q ss_pred CCCEEEEEEeeCCcccceeEEEec-cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE-ecCCCcceEEEee
Q 001367 416 SKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCP 493 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~ 493 (1091)
.+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|+...+.... +.+|...|..+.|
T Consensus 237 ~~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw 309 (484)
T KOG0305|consen 237 SDGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW 309 (484)
T ss_pred cCCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence 99999999999876665 5667 99999999998 34 789999999999999998876655 8899999999999
Q ss_pred cccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC-CCCEEEEEecCCCCceEEEEEecCCceeeEEEe
Q 001367 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
++|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|++ ..|+.|++||..++..+....
T Consensus 310 --s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vd 385 (484)
T KOG0305|consen 310 --SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVD 385 (484)
T ss_pred --CCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccc
Confidence 55778999999999999999988899999999999999999999 5567777765 458899999999999988877
Q ss_pred cccccccceEEEEEcCCCCEEEE--EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEE
Q 001367 573 GLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 573 ~~~~~~~~v~~v~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
.. ..|.++.|++..+-+++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|+
T Consensus 386 tg----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 386 TG----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cC----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEecc
Confidence 63 48999999999887777 55778999999999999999988766 699999999999999999999999999
Q ss_pred CCCC
Q 001367 651 TPES 654 (1091)
Q Consensus 651 ~~~~ 654 (1091)
+-..
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=215.04 Aligned_cols=271 Identities=16% Similarity=0.190 Sum_probs=228.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC--CCcEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 469 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~--d~~i~i 469 (1091)
+..-...|.++.|+++|.+|++++.|.+++|||..+|+.++ ++..+...|..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 55567899999999999999999999999999999997666 5666777899999988877 4555554 889999
Q ss_pred EeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
-++.+.+.++.|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....++ .+|.|.|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 9999999999999999999999997765 689999999999999999888887776666555 789999999998865
Q ss_pred CCCCceEEEEEecCCc--eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCC-c
Q 001367 550 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P 626 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 626 (1091)
...|.+||++.- .+...+.-..........+.|+|||++++.+...+.+++.|.-+|..+..+..+.....+ .
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 337999999863 344454443223467899999999999999999999999999999999988876543222 4
Q ss_pred eEEEccCCCEEEEEECCCeEEEEECCCCCeeccccc-ccccceeeeeccc
Q 001367 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPI 675 (1091)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~ 675 (1091)
..+|+||++++++|+.||+|.+|+++++..+..+.+ +..++.++.|+|.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 678999999999999999999999999999988888 5788888888654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-26 Score=212.21 Aligned_cols=255 Identities=16% Similarity=0.242 Sum_probs=214.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|...|.+++|+.+|.+||+|+.|+++.+|++...+..+. ....+|.+.|..++|.|.... .+++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 567999999999999999999999999999999998754433 356799999999999997766 789999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+.++++........+.+. ++| +++|.+++.++.|..|.+.|.++.+....... ...+..++|+-++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999998876655554 345 56788999999999999999887665544332 23566788887777666553
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
|.|.|.|.....-+++..++.|. ....|+.|+|+|+++++|+.|..+.+||++..-+++.+....- +|..+.|+
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS 240 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFS 240 (313)
T ss_pred -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEec
Confidence 36779999888889999999988 8889999999999999999999999999999888888876655 69999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCCeecccc
Q 001367 632 KNGTLLAVIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
.||++||+++.|..|-|=++++|..+..++
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEee
Confidence 999999999999999998888886665543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-27 Score=238.30 Aligned_cols=313 Identities=16% Similarity=0.176 Sum_probs=226.3
Q ss_pred ccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEE
Q 001367 659 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR 738 (1091)
Q Consensus 659 ~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~ 738 (1091)
.+.+++..|.++++ .|.|..+++|+.|.+|++||+..-...... ++.-.......|.+
T Consensus 162 ~l~hgtk~Vsal~~---------------------Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~l~P~E~h~i~s 219 (641)
T KOG0772|consen 162 QLKHGTKIVSALAV---------------------DPSGARFVSGSLDYTVKFWDFQGMDASMRS-FRQLQPCETHQINS 219 (641)
T ss_pred eccCCceEEEEeee---------------------cCCCceeeeccccceEEEEecccccccchh-hhccCcccccccce
Confidence 35567777777777 788899999999999999998743322111 22222225667888
Q ss_pred EEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEE
Q 001367 739 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 818 (1091)
Q Consensus 739 ~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 818 (1091)
+.|++.|..|++.+.....+|+|- ||..++-
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DR-------------------------------------------------dG~~~~e 250 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDR-------------------------------------------------DGFEIVE 250 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEcc-------------------------------------------------CCceeee
Confidence 889998888888887777777652 3333333
Q ss_pred EeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc-eeeeec-----cccCCeEEEE
Q 001367 819 ASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLE-----GHSKRVTGLV 892 (1091)
Q Consensus 819 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-~~~~l~-----~h~~~V~~l~ 892 (1091)
...|.-+|-|+. .-++|...+++.+|+|+....+.+++.||+++|||+...+ .+..++ +..-+++.++
T Consensus 251 ~~KGDQYI~Dm~------nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 251 FSKGDQYIRDMY------NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred eeccchhhhhhh------ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee
Confidence 333333444443 2346888999999999888899999999999999998753 223332 2345789999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeee
Q 001367 893 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 971 (1091)
Q Consensus 893 ~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~ 971 (1091)
|++||+++|.|..||.|.+|+..+..... .+.....|.. ...|++++||+||++|++ +.|+++++||++..+....
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred cCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence 99999999999999999999986543222 2233333332 136999999999999999 8999999999987654322
Q ss_pred eecCC--ccCEEEEEEeeCCCEEEEEEc------CCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCC
Q 001367 972 WFPIS--SVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1043 (1091)
Q Consensus 972 ~~~~h--~~~v~~v~fs~dg~~l~t~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1043 (1091)
...+- ..+-+.++||||.++|+||.. .|.+.+||..+.+.+.++... ....+.+.|+|. =+
T Consensus 402 ~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~----------~aSvv~~~Whpk-LN 470 (641)
T KOG0772|consen 402 VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS----------TASVVRCLWHPK-LN 470 (641)
T ss_pred hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----------CceEEEEeecch-hh
Confidence 22221 456678999999999999874 478999999999998887622 123456789994 67
Q ss_pred eEEEEecCCcEEE-EecCCC
Q 001367 1044 QFAVGLTNGEVYV-IEPNEP 1062 (1091)
Q Consensus 1044 ~l~~g~~dg~v~~-w~~~~~ 1062 (1091)
++.+|+.||++++ ||...+
T Consensus 471 Qi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 471 QIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred heeeecCCCceEEEECcccc
Confidence 8999999999986 455443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=230.47 Aligned_cols=293 Identities=14% Similarity=0.187 Sum_probs=235.2
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEec----cccccceeeeeecCCCccEEEE
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI----GACSMLFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l 402 (1091)
.+.+..|.-.|.||+++||++ ...+++.+|+|.=|++.+|+.... +|.- +....+++..- ++|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 466788989999999999998 569999999999999999986521 1111 11112222222 4899999999
Q ss_pred EECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
+.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|..|++|+++....+.++-
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999988776 6889999999999987666 68999999999999999999999999
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
+|...|.++.... -.+.+-+|+.|+++++|++ .......+.++.+.+.|++|-.+. .+++|+. +|.|.+|++
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSL 355 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeee
Confidence 9999999987643 3355666679999999999 445566777888899999997654 5667765 777999999
Q ss_pred CCceeeEEEecc-ccc--------ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeEEEEeCCCCCCCCceEE
Q 001367 563 SEGAIKRTYQGL-QLQ--------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 563 ~~~~~~~~~~~~-~~~--------~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~ 629 (1091)
...+++.+.... ... ...|++++..|..+.+++|+.+|.|++|-+..+ .++..++.. ..|+.++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence 998887765432 111 127999999999999999999999999998877 444555443 3589999
Q ss_pred EccCCCEEEEEE
Q 001367 630 FNKNGTLLAVIA 641 (1091)
Q Consensus 630 ~s~~~~~l~~~~ 641 (1091)
|+++|+.+++|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999776663
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=215.57 Aligned_cols=276 Identities=18% Similarity=0.235 Sum_probs=219.3
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
-.+.|.+++|||....+++.||-||+|++|+++. |..+. +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 3569999999996666888999999999999987 33332 1245699999999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+..|+||+.|++|+.||.+...++.++. -.+.++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998533 46789999999999887766689999999999999999999888886 55677777
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeec--CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc--ee
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AI 567 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~ 567 (1091)
.. --.+++.+..++.|.+|++++....+... .-.-.+.|++..+|....+.|+- +|.+.+..+..+ +.
T Consensus 163 Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 54 22488999999999999997765444322 12336788998888887787775 555777666665 44
Q ss_pred eEEEeccccc------ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 568 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 568 ~~~~~~~~~~------~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
-..|+.|... ...|++++|+|.-..|++++.||++.+||-+....+...+.+.. +|.+++|+.+|.++|-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 4455555521 23578899999999999999999999999888777777665544 799999999999887653
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=218.95 Aligned_cols=298 Identities=16% Similarity=0.247 Sum_probs=246.4
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
..+.+.+.||++.||.++-..... ++.+++.|.+.+||.+++|.++.. +.||.+.|.+++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 456778899999999999988776 889999999999999999999976 789999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEe------eC--------Cc----------------------c-cceeEEEeccccCeeE
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAY------HG--------GS----------------------D-ARQQLEIDAHVGNVND 446 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~------~~--------~~----------------------~-~~~~~~~~~h~~~v~~ 446 (1091)
|++.+.++++++.|++..||.. .. ++ . ..++..+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 11 00 0 1124568899999999
Q ss_pred EEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec
Q 001367 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1091)
Q Consensus 447 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1091)
..|...|+ .+++++.|.+..+||+++|+.+..+.||....+.++-+| ..+++++.+.|.+.++||++.
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFRe-------- 345 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFRE-------- 345 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchh--------
Confidence 99999999 699999999999999999999999999999999888765 447888899999999998752
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001367 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd 606 (1091)
.| ..+..|+||. ..|+++.|..+ ..+++|++|.+|++||
T Consensus 346 ----aI---------------------------------~sV~VFQGHt---dtVTS~vF~~d-d~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 346 ----AI---------------------------------QSVAVFQGHT---DTVTSVVFNTD-DRVVSGSDDRTVKVWD 384 (481)
T ss_pred ----hc---------------------------------ceeeeecccc---cceeEEEEecC-CceeecCCCceEEEee
Confidence 11 1234577777 89999999875 5689999999999999
Q ss_pred CCCC-eeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeec----ccccccccceeeeeccccccccc
Q 001367 607 MNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD----AAGVLSDNLRKLSVNPISTVTGA 681 (1091)
Q Consensus 607 ~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~ 681 (1091)
+++. .++.++.... .++.++.+..++.++.--++..|++||+...+..+ ..++|...|.|++|...
T Consensus 385 LrNMRsplATIRtdS---~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee------ 455 (481)
T KOG0300|consen 385 LRNMRSPLATIRTDS---PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE------ 455 (481)
T ss_pred eccccCcceeeecCC---ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc------
Confidence 9875 4566776543 57899999988899999999999999998775433 34688889999999643
Q ss_pred cccCCcccCCCCCCCCCcccccccccccccccccc
Q 001367 682 GIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 682 ~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
.| -..+++++.|..+.-|++..
T Consensus 456 ------------hp-~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 456 ------------HP-ACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ------------Cc-ccccccccccceeeeeEecc
Confidence 22 25578889999998898763
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=216.87 Aligned_cols=311 Identities=13% Similarity=0.164 Sum_probs=233.5
Q ss_pred ecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccccc--CCcccceeecCCccccc
Q 001367 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFA--RPSECQSLLLPSKVKAN 734 (1091)
Q Consensus 657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~ 734 (1091)
+..+++|...|++++| +.||+.+++++.|++|++|++.-- ...++..... ..+
T Consensus 79 ~~~LKgH~~~vt~~~F---------------------sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~d 133 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAF---------------------SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYD 133 (420)
T ss_pred hhhhhccCCceeeeEE---------------------cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCC
Confidence 3467899999999999 889999999999999999997531 1122222222 234
Q ss_pred cEEEEEEecCCCeEEEee-cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCC
Q 001367 735 KISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 813 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 813 (1091)
..+.++|+||-+.++... ....+++|.+...+. |... ....-||-.. + ...|.-.+..+-+..++
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~--~~~v~~D~~~--------f-~~kh~v~~i~iGiA~~~ 199 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGS--HHFVHIDNLE--------F-ERKHQVDIINIGIAGNA 199 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCC--cccccccccc--------c-chhcccceEEEeecCCc
Confidence 678899999988766555 457899998654321 1111 1111122110 1 01366777888888999
Q ss_pred CEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEecc---Cc-----ceeeeeccc
Q 001367 814 AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR---SS-----EVISKLEGH 884 (1091)
Q Consensus 814 ~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~---~~-----~~~~~l~~h 884 (1091)
++|++++ |..|.+|++. |+.+..+......-+..+.|| +|+++|+++-.-.|++|.+- .| ..+..|.||
T Consensus 200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH 277 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH 277 (420)
T ss_pred eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence 9999998 7889999998 999998887777788899999 99999999988899999873 23 235678999
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee--eeeeeeccCCC-cCCCCCceEEEEcCCCCEEEEEecCeEEEE
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLLVHETHLAIY 961 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~--~~~~~~~~~~~-~~~~~~i~~l~fs~dg~~la~~~d~~i~vw 961 (1091)
.+.|.+++||++...++|+|.||+++|||++-.... ....++..... .........++.||.|+.||++....+++|
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF 357 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence 999999999999999999999999999998742211 11122222100 001123448999999999999999999999
Q ss_pred EcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 962 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 962 d~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
..++|+....+...|...|++++|++||++++|++ |..+++..-..|
T Consensus 358 ~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 358 ASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred EcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 99999988888888999999999999999999985 778988864333
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-26 Score=248.46 Aligned_cols=277 Identities=15% Similarity=0.196 Sum_probs=211.0
Q ss_pred cccccEEEEEEecCCCeEEEeecCceEEEeecCCccc------c------------------cccceeecc---------
Q 001367 731 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LSTEATTKV--------- 777 (1091)
Q Consensus 731 ~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~------~------------------~~~~~~~~~--------- 777 (1091)
.|.+.|.++.||+||++|++++.||.|+||.+-..+. . .........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4899999999999999999999999999999876211 0 000000000
Q ss_pred -CCccccCCCCCceeeec-CCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCC
Q 001367 778 -PPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 855 (1091)
Q Consensus 778 -~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 855 (1091)
...+....... +.... ....||...|..+.||.++-+|-+.-|.+|++|++...++++.|. |...|+|++|+|-|.
T Consensus 345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 00011111000 00000 112479999999999988755555459999999999999999998 999999999999999
Q ss_pred cEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCC
Q 001367 856 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 935 (1091)
Q Consensus 856 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 935 (1091)
+|+++|+-||.|+||++...+.+.-..-+ .-|++++|+|||++.+.|+.+|.+++|+....+......+....+.....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999987765444434 77999999999999999999999999999987766555555554444333
Q ss_pred CCceEEEEcCCCC--EEEEEecCeEEEEEcCCcceeeeeecCC-ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 936 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 936 ~~i~~l~fs~dg~--~la~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
..|+.+.|.|... .|+++.|..|+|||..+...+..+...| ...-....|+.||++|+++++|..|++|++....
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4799999987544 7888999999999998777777755444 2334667899999999999999999999985443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=244.33 Aligned_cols=237 Identities=10% Similarity=0.095 Sum_probs=184.5
Q ss_pred ecCCCccEEEEEECCC-CCEEEEEECCCEEEEEEeeCCcc-c----ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC
Q 001367 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
+.+|...|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 7899999999999996 89999999999999999986532 1 123357799999999999999874 567999999
Q ss_pred cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEE-----EEEcCC
Q 001367 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN 540 (1091)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~-----~~~s~d 540 (1091)
+|+|||+.+++.+..+. |...|.+++|++ +|.+|++++.|+.|++||++++.....+..|.+.+.. ..|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999998887775 667899999954 6789999999999999999998888888888765432 345689
Q ss_pred CCEEEEEecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001367 541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 541 ~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1091)
+.++++++.++..++.|++||++. ++++..+..+. ....+......+++.++++|+.|+.|++|++..+. +..+...
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence 999999887655556899999985 55555543322 12333444445568888899999999999998774 3333333
Q ss_pred CCCCCCceEEEccCC
Q 001367 620 GGLPENPRICFNKNG 634 (1091)
Q Consensus 620 ~~~~~v~~v~~s~~~ 634 (1091)
....++.+++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 333467889999864
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=237.18 Aligned_cols=284 Identities=18% Similarity=0.297 Sum_probs=241.6
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE-EE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV 403 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~ 403 (1091)
.+.+.|.||+..|..+++.++. .+++++.||++++|+-..++.+.... +.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~~-----------------~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETHA-----------------FEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCccccccee-----------------cccCcceeeccce
Confidence 4668899999999999998887 36899999999999987776664322 5567787777 88
Q ss_pred ECC-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
+-+ ++.+|++|+.|++|.+|...+...+. .+.+|...|.+++...++. +++||.|.++++|- .+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence 875 66679999999999999999987665 7889999999999887775 89999999999994 567778899
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
+|+..|++++..+.. .+++|+.|++|++|. .++...++.+|..-|..+++-+++.+ ++|+. ++.|+.|++
T Consensus 138 gH~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsN----Dg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSN----DGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecC----CceEEEEec
Confidence 999999999886543 899999999999994 47788889999999999999888765 46654 778999998
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
+|+.+..+.+|. .-+.++....++..++++++|++++||+.. ++.+.+..+.. .|+++.+-++|. +++|+.
T Consensus 208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence 888999999998 899999988888999999999999999976 77777776654 588888888776 888999
Q ss_pred CCeEEEEECCCC
Q 001367 643 ENRIKILETPES 654 (1091)
Q Consensus 643 dg~i~iwd~~~~ 654 (1091)
||.|+||.....
T Consensus 279 DG~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DGRVRVFTVDKD 290 (745)
T ss_pred CceEEEEEeccc
Confidence 999999987744
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=231.71 Aligned_cols=285 Identities=17% Similarity=0.234 Sum_probs=239.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 66799999999999999999999999999999998876 223336778888999999999999 789999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+...+...++.+|...|+++.|.-.. ..+++|+.|.+|++||+....+..++.. ...+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeeccc--
Confidence 99999999999999999999986543 3499999999999999998666554332 2334444444 445556654
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC--CCCCceEE
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 629 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 629 (1091)
+..|+.||+++..+......+. .|+++..++++..+++.+.|.++.+.|+.+.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg----~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG----RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc----ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 5569999999999988887744 899999999999999999999999999999998888875432 23478899
Q ss_pred EccCCCEEEEEECCCeEEEEECCCCCeeccccccccc--ceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
|||++.|+++|+.||.|+||++.+++....+...... |++++| .|.|..+++++.++
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W---------------------~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW---------------------NPSGSGLLSADKQK 453 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE---------------------cCCCchhhcccCCc
Confidence 9999999999999999999999999888777766555 999999 66678889999999
Q ss_pred cccccc
Q 001367 708 KSEVEK 713 (1091)
Q Consensus 708 ~i~~w~ 713 (1091)
.+.+|.
T Consensus 454 ~v~lW~ 459 (459)
T KOG0288|consen 454 AVTLWT 459 (459)
T ss_pred ceEecC
Confidence 998883
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-26 Score=238.62 Aligned_cols=295 Identities=18% Similarity=0.217 Sum_probs=238.1
Q ss_pred cCCCCcE---EEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 332 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 332 ~h~~~V~---~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
.|...|. ++..++.+.++|.+|+.||.|++|++..-..... .+ -...+..|...|..++...+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~ 85 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNG 85 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCC
Confidence 4444555 5666655444789999999999999865433211 00 011266799999999999999
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEE-cCCCCceEEEEeeCCCcEEEEeCCCC--ceeEE-----
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG--SRTYS----- 480 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~~~----- 480 (1091)
+-|++++.|.+|++|+...+.. ....+++.|...|.|+++ .++.. ++++||.|+.|.+||+.+| +.+.+
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~~-~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDNT-FCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred CceEEecCCceEEEeecccCcc-hhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 9999999999999999988741 222367889999999999 66666 8999999999999999988 33322
Q ss_pred ---ec-CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 481 ---FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 481 ---~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
+. |+..+|++++. ++.|..+++|+..+.+++||.++.+....+.+|...|..+..++||+.+++++. +++
T Consensus 163 ~~sl~sG~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----Dgt 236 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGT 236 (735)
T ss_pred cccCCCCCccceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----Cce
Confidence 22 78889999988 456689999999999999999999999999999999999999999999999986 778
Q ss_pred EEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCE
Q 001367 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1091)
|++||+...+++.++..|. ..|.++..+|+-.++++|+.||.|+.=|+.+......+-...+ +|..+..+...+-
T Consensus 237 IrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNS 311 (735)
T ss_pred EEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCC
Confidence 9999999999999999988 7799999999999999999999999999988533332222222 4677777765555
Q ss_pred EEEEECCCeEEEEECCC
Q 001367 637 LAVIANENRIKILETPE 653 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~ 653 (1091)
+-+++.|+.|+-|....
T Consensus 312 ~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 312 VWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ceeeeccccceecCCcc
Confidence 68888999999997653
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=226.28 Aligned_cols=293 Identities=11% Similarity=0.153 Sum_probs=233.2
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
+-+..|.||.+.|.|++=+|..-..+|+|+.||.|+|||+.+..++.. +..|.+.|..+++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v 117 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICV 117 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEe
Confidence 344567999999999999998844689999999999999999888765 7789999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
.. ..+++++.|.+|+.|.+... ..+ ++.+ ...+..+.-+..+. .++|||. .|.|||.....+++.+.-.
T Consensus 118 ~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG 186 (433)
T KOG0268|consen 118 TQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWG 186 (433)
T ss_pred cc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecC
Confidence 87 77889999999999998873 222 3333 23455666655556 6888886 4899999999999999888
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
...|.++.|+|... ..|++++.|+.|.+||++....+..... ......++|+|.+-.++++.. |..++.+|++.
T Consensus 187 ~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~ 260 (433)
T KOG0268|consen 187 ADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE----DHNLYTYDMRN 260 (433)
T ss_pred CCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc----cccceehhhhh
Confidence 88999999988754 5889999999999999999887765432 224567899995555555543 77799999875
Q ss_pred c-eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC
Q 001367 565 G-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1091)
Q Consensus 565 ~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1091)
- .++..+.+|. ..|..+.|+|.|+-+++||.|.+|+||..+.+..-..... .....|.++.||.|.+++++|++|
T Consensus 261 l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 261 LSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred hcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCC
Confidence 4 3455555555 8999999999999999999999999999987765433322 223468999999999999999999
Q ss_pred CeEEEEECCCCCee
Q 001367 644 NRIKILETPESNSV 657 (1091)
Q Consensus 644 g~i~iwd~~~~~~~ 657 (1091)
+.|++|.....+.+
T Consensus 337 ~nvRlWka~Asekl 350 (433)
T KOG0268|consen 337 GNVRLWKAKASEKL 350 (433)
T ss_pred cceeeeecchhhhc
Confidence 99999998755433
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-23 Score=225.37 Aligned_cols=521 Identities=13% Similarity=0.125 Sum_probs=329.5
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCc-eEEEEeeCCCcEEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW 470 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-~~l~s~~~d~~i~iw 470 (1091)
+.|-+..-..-.||+|+++++.+..+ .|.||...+|.++. .+.+|..++..+.+.|.... .++++++.||.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 33333344456799999999887654 69999999999887 68899999999999887663 478899999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeec------------ccCCceEEEEEe--cCCeEEEEecCCCCcee-eecCCCCcEEEE
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPH------------AKENIHFIFSIS--VDGKIKAWLYDSLGARV-DYDAPGLGCTRM 535 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~------------~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~ 535 (1091)
|...+.+++++..+.. +..+.+. ...+-..+...+ ..+.++-+.+.+..... .+......-.++
T Consensus 88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 9999999988864432 2222221 011111111111 11111111111111000 000001113567
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeE-EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC--Cee
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQL 612 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~--~~~ 612 (1091)
.+++.|.+...+. +..+.+|+..++.... ....+..|...+++.+++|+++++++|..||.|.+|.--. +..
T Consensus 167 ~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred EEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 8888888877765 4458889887755111 1111222335589999999999999999999999996433 222
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCC
Q 001367 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNED 692 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~ 692 (1091)
......|-+...|.+++|+++|.+|++|+..|.+.+|.+.+++. +-++.
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPR------------------------------ 290 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLPR------------------------------ 290 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-ccccc------------------------------
Confidence 22222233345799999999999999999999999999987752 11111
Q ss_pred CCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccc
Q 001367 693 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 772 (1091)
Q Consensus 693 ~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 772 (1091)
-.+.|..+.+|||+........|+.+.+-.........
T Consensus 291 ---------------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--- 328 (792)
T KOG1963|consen 291 ---------------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--- 328 (792)
T ss_pred ---------------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh---
Confidence 24567888899999988888888888886654322100
Q ss_pred eeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEE-EEEeCCeEEEEEccCceeEEEecC-----CC----
Q 001367 773 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGVISLYIVMTFKTILTIMP-----PS---- 842 (1091)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-a~~~dg~i~iwd~~~~~~~~~~~~-----~~---- 842 (1091)
++.-..+.+.. . ......-.+.++++|.-+.+ .-+..|.|++||+.+-+.+..+.. +.
T Consensus 329 -----tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 329 -----TISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred -----hccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 01101111000 0 01234556778888844444 444479999999998777665431 11
Q ss_pred --CCeEEEEEcCCCCcEEEEEe--------CCC--eEEEEeccCccee-----eeeccccCCeEEEEECC-CC-CEEEEE
Q 001367 843 --PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEVI-----SKLEGHSKRVTGLVFSD-AL-NILVSS 903 (1091)
Q Consensus 843 --~~i~~l~~s~~~~~~la~g~--------~dg--~i~iwd~~~~~~~-----~~l~~h~~~V~~l~~sp-dg-~~las~ 903 (1091)
-.+++++.+. .|.+++++- .|| .+++|-......- .....|...+.+.+|.+ -. .+++++
T Consensus 397 ~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta 475 (792)
T KOG1963|consen 397 IQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA 475 (792)
T ss_pred eEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe
Confidence 2478888888 699999863 333 6788976654322 22345877766666643 33 379999
Q ss_pred eCCCcEEEEEcCCCcee-----eeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCcc
Q 001367 904 GGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV 978 (1091)
Q Consensus 904 s~Dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~ 978 (1091)
+.||.++||-+...+.. ...+.....-|. .++++++||.||..|+++.++.|.+||..+...+.........
T Consensus 476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~ 552 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNW 552 (792)
T ss_pred ccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccccc
Confidence 99999999998432211 111222221233 3689999999999999999999999999884333222222233
Q ss_pred CEEEEEEee----CCCEEEEEEcCCcEEEEeCCCCceEE
Q 001367 979 PISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQC 1013 (1091)
Q Consensus 979 ~v~~v~fs~----dg~~l~t~~~dg~v~iwd~~~~~~~~ 1013 (1091)
++..+.|.. ++... ....+.+.+|++-++.+.-
T Consensus 553 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 553 PIAELLFTAQTQNDGALV--HATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred chHhHhhhccccccccee--eccCceEehHhhhhhheec
Confidence 444444433 44333 3356789999998887764
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=241.78 Aligned_cols=270 Identities=17% Similarity=0.201 Sum_probs=210.0
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCccc----------ceeEEEeccccCeeEEEEcC-CCCceEEEEeeC
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 463 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~ 463 (1091)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|.+++|+| +++ +|++++.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3455666777778777777777777777776544321 11224779999999999999 777 8999999
Q ss_pred CCcEEEEeCCCC-------ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEE
Q 001367 464 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1091)
Q Consensus 464 d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1091)
|++|++||+.++ ..+..+.+|...|.+++|+|.. +.+|++++.|+.|++||+++......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 35899999999999999999888888888999999999
Q ss_pred EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe----CCCeEEEEECCCCe-
Q 001367 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 611 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s----~dg~i~iwd~~~~~- 611 (1091)
|+|+|..|++++. ++.|++||+++++.+..+.+|. ...+..+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999876 6779999999999988888876 23455678899888888754 47999999998754
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEE-CCCeEEEEECCCCCeeccccc-ccccceeeeecc
Q 001367 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 674 (1091)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~ 674 (1091)
.+.....+.. ..+....|+++++++++++ .|+.|++||+.++..+..... ...++..+++.|
T Consensus 250 p~~~~~~d~~-~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQS-SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCCC-CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 3333333222 3455667899999999887 499999999998876654433 334556666654
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=236.51 Aligned_cols=356 Identities=17% Similarity=0.195 Sum_probs=265.4
Q ss_pred EEEEC-CCCCEEEEEECCCEEEEEEeeCCccc---ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-
Q 001367 401 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG- 475 (1091)
Q Consensus 401 ~l~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~- 475 (1091)
.+..+ |+++||.+||.||.|++|++...... .....+..|...|++++...+++ .|++++.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 46788999999999999998754331 12346778999999999999998 7999999999999999887
Q ss_pred -ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--ee--------eec-CCCCcEEEEEEcCCCCE
Q 001367 476 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR 543 (1091)
Q Consensus 476 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~d~~~ 543 (1091)
-++.++..|..-|.++++. ..+..++++|+.|+.|++||++++.. .. .+. ++..+|.+++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6888999999999999984 34557999999999999999997633 11 122 56668999999999988
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
+++|+. ++.+++||.++++.+..++||. ..|..+..++||..++++|.||+|++||+...+++.++..|..
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-- 256 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-- 256 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence 888876 4459999999999999999998 9999999999999999999999999999999999999988866
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
.|+++..+|+-..+++|+.||.|+.=|+.+......+.....+|..+.. ....+.+-.+
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~---------------------~~~~~~~Wvt 315 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHL---------------------HEHDNSVWVT 315 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhh---------------------ccccCCceee
Confidence 5899999999999999999999999998875444444444444444433 2233334666
Q ss_pred ccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCcccc
Q 001367 704 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 783 (1091)
Q Consensus 704 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 783 (1091)
..|+.|+-|..... ..+++.|.... -+.+....+.+...
T Consensus 316 Ttds~I~rW~~~~~---------------------~~l~~s~~~~~-~~T~~~~~~~~~~~------------------- 354 (735)
T KOG0308|consen 316 TTDSSIKRWKLEPD---------------------IALSVSGDLDF-FSTDSNNHSCDLTN------------------- 354 (735)
T ss_pred eccccceecCCccc---------------------cccccCCCCCc-ccccCCCccccccC-------------------
Confidence 77788888876521 13344444332 22222111111100
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEec
Q 001367 784 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM 839 (1091)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~ 839 (1091)
+.. .. . .....+..-++-.|-+++++-. .|.+.+||+-....+..+.
T Consensus 355 --tp~--~v--i---~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 355 --TPD--SV--I---PGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred --CCc--ee--c---cCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 000 00 0 1223444455666888888887 6999999998777666553
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=223.50 Aligned_cols=284 Identities=14% Similarity=0.223 Sum_probs=235.4
Q ss_pred EEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEe
Q 001367 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1091)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1091)
.+.||...|.+++=+|..-. .+++|+.||.|++||+.+..++.++..|.+.|..+++.. ..+++++.|.+|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999997622 699999999999999999999999999999999999954 4699999999999998
Q ss_pred cCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE
Q 001367 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 595 (1091)
++.. ...++. ....+..+.-+..+..+++||. .|.|||.....++..+.-.. ..|.++.|+|-...+++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7763 222322 2334556666666777888865 39999999888888888666 78999999998776655
Q ss_pred -EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC-Ceecccccccccceeeeec
Q 001367 596 -AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673 (1091)
Q Consensus 596 -~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 673 (1091)
++.|+.|.+||++.+.++..+..... -+.++|+|++-.++++..|..++.||+... .++....+|...|..++|
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf- 280 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF- 280 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEecc-
Confidence 56999999999999999988766543 488999998888999999999999999876 667778889999999988
Q ss_pred cccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeec
Q 001367 674 PISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 753 (1091)
Q Consensus 674 ~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 753 (1091)
+|.|+-+++|+.|.+||+|....+.+....... ....|.++.||.|.+++++|+.
T Consensus 281 --------------------sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 281 --------------------SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred --------------------CCCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecCC
Confidence 788899999999999999998865544433322 3457899999999999999999
Q ss_pred CceEEEeecCC
Q 001367 754 NGVHLMWRWPR 764 (1091)
Q Consensus 754 dg~i~vw~~~~ 764 (1091)
|+.+++|.-..
T Consensus 336 d~nvRlWka~A 346 (433)
T KOG0268|consen 336 DGNVRLWKAKA 346 (433)
T ss_pred Ccceeeeecch
Confidence 99999998543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=209.21 Aligned_cols=275 Identities=16% Similarity=0.160 Sum_probs=216.7
Q ss_pred cCCCccEEEEEECC-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 393 RDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 393 ~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
...+..|.+++||| ...++++++.|++|++|+++....+.. .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678999999999 556667889999999999987422222 24567999999999999998 799999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+.+++ +..+..|.++|..+.|.+..+-..|++|+.|++|+.||.+.......+..++ .+.++.. ....++++..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99994 5667789999999999877777799999999999999999888887776654 3333322 2334555544
Q ss_pred CCceEEEEEecCCceeeE-EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCC-------
Q 001367 552 EGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------- 621 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~------- 621 (1091)
+..|.+|+++.+.... .....- +..++|++..+|....+.|+-+|.+.|..++.+ +.-..+..|..
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 5569999997664322 222221 356889999999888899999999999998876 33344444432
Q ss_pred CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccccc
Q 001367 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1091)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1091)
...|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+..|.+.+
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 33578899999999999999999999999998888888899999999999976665544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-24 Score=222.63 Aligned_cols=216 Identities=17% Similarity=0.213 Sum_probs=159.9
Q ss_pred eecCCCccEEEEEECC-CCCEEEEEECCCEEEEEEeeCCcccc---eeEEEeccccCeeEEEEcCCCCceEEEEeeCCCc
Q 001367 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~ 466 (1091)
++.+|...|+.+.|+| +..+||+|+.|..|+||.+..|-... .-..+.+..-.|.++.|+|.... |+..+..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILASGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEeccCce
Confidence 4889999999999999 77899999999999999998543211 11123333447899999998774 444555889
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-eeeecCCCC-cEEEEEEcCCCCEE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRRL 544 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-~i~~~~~s~d~~~l 544 (1091)
++|||+.+++.+..+.+|...|.+..| +.||.++++.+.|+.|+|||.+.... +.....|.+ .-..+.|..+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 999999999999999999999999998 67899999999999999999987544 334445543 23456777666677
Q ss_pred EEEecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCee
Q 001367 545 FSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQL 612 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~~~~~ 612 (1091)
++.+.+......|++||... +..++++.... ...|.---|.||.+.++.+ -.+.++..+.+...++
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 77666554566799999875 34444444333 2345555688998877664 4678888888776544
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=192.91 Aligned_cols=299 Identities=15% Similarity=0.212 Sum_probs=233.4
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeC------Ccc------cceeEEEeccccCeeEEEEcCCCCceEEEE
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG------GSD------ARQQLEIDAHVGNVNDLAFSAPCKQISVIT 460 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~------~~~------~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s 460 (1091)
-..+..|.+++|+|.|.+.|+|++..+.+|--... +.. ......-+.|.+.|.|.+|+|+|+ ++++
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--liat 106 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIAT 106 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEEe
Confidence 34668999999999999999999999988764432 111 011122346889999999999999 9999
Q ss_pred eeCCCcEEEEeCCCCcee-----EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEE
Q 001367 461 CGDDKTIKVWDAVTGSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 461 ~~~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1091)
|+.|++|++.-.....+. .+|.-|.+.|..++|...+.
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~------------------------------------- 149 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE------------------------------------- 149 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC-------------------------------------
Confidence 999999999765433321 23445666666666532211
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1091)
..+..|++++. ++..|++-|..+|+..+.+.+|. +.|.++ ++-++-.+++|+.|.+|++||++-...+.+
T Consensus 150 ---s~~~il~s~ga---gdc~iy~tdc~~g~~~~a~sght---ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~ 219 (350)
T KOG0641|consen 150 ---SGGAILASAGA---GDCKIYITDCGRGQGFHALSGHT---GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNT 219 (350)
T ss_pred ---cCceEEEecCC---CcceEEEeecCCCCcceeecCCc---ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeee
Confidence 23445666553 57889999999999999999988 666655 344678899999999999999998888877
Q ss_pred EeCCCC-----CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccC
Q 001367 616 IDAGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSN 690 (1091)
Q Consensus 616 ~~~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~ 690 (1091)
+....+ ...|.+++..|.|++|++|-.|....+||+..++.++.+..|...|.++.|
T Consensus 220 l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrf------------------ 281 (350)
T KOG0641|consen 220 LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRF------------------ 281 (350)
T ss_pred ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEe------------------
Confidence 753221 246889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecC
Q 001367 691 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 763 (1091)
Q Consensus 691 ~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~ 763 (1091)
+|...++++++.|..|++-|++..-..+...+.... |...+-.+.|.|..-.+++.+.|.++.+|-++
T Consensus 282 ---sp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e--hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 282 ---SPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE--HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ---CCCceEEEEecccceEEEeecccchhhcCceEEEEe--ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 778889999999999999998755444444443333 78888899999999999999999999999753
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-25 Score=204.89 Aligned_cols=200 Identities=18% Similarity=0.238 Sum_probs=161.4
Q ss_pred CCCCeeEEEecC-CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce
Q 001367 800 SQEAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 877 (1091)
Q Consensus 800 ~~~~v~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~ 877 (1091)
|..+|.++.+++ +++.+++++ |++|++|+....+.++++.+|...|...+|+|....++++++.|+.+++||++..-.
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence 333333443333 223344445 788888888888888999999999999999999999999999999999999987443
Q ss_pred eeeeccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEE-E-Ee
Q 001367 878 ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-L-VH 954 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la-~-~~ 954 (1091)
...+..|...|.++.|+. +...|+|++.|+.|+.||+..-+ ..+..+.+|.- .|..++|||...-|+ + +.
T Consensus 183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~---AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGL---AVRKVKFSPHHASLLASASY 255 (311)
T ss_pred eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCce---EEEEEecCcchhhHhhhccc
Confidence 344889999999999986 66889999999999999998743 34555577765 799999999876554 4 58
Q ss_pred cCeEEEEEcCCcceeeeeecCCccCEEEEEEee-CCCEEEEEEcCCcEEEEeC
Q 001367 955 ETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 955 d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~-dg~~l~t~~~dg~v~iwd~ 1006 (1091)
|-+++|||...+.........|+.-|..+.||+ ++.++|+++.|+.++||+-
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 889999999877666666778899999999998 6789999999999999984
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=218.31 Aligned_cols=281 Identities=17% Similarity=0.236 Sum_probs=243.1
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
..+.++..+|....+++|+.|.++.++|..+++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888888899999999999999999987665 7889999999999999998 79999999999999998888
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC--CCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
.......|..+|+.+..++ .|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 8888899999999999866 5579999999999999999999888766553 346899999999999988875 7
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCC
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1091)
+.+.+||+.++..+..|.+|. ++|..++|+.+|.+++++++|+.|++||++.-+...++...... .+.++.|.+.|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence 789999999999999999988 99999999999999999999999999999999998888877664 78999999999
Q ss_pred CEEEEEECCCeEEEEECCCC--CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 635 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
.+|+.++.+=.|++++-.+. ..+..+..|.+..+++.| ....+++++++.|...+++
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F---------------------g~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRF---------------------GEHAQYLASTSMDAILRLY 503 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeee---------------------cccceEEeeccchhheEEe
Confidence 99999988767777664433 555666667777777777 5566778888887776665
Q ss_pred c
Q 001367 713 K 713 (1091)
Q Consensus 713 ~ 713 (1091)
.
T Consensus 504 a 504 (506)
T KOG0289|consen 504 A 504 (506)
T ss_pred e
Confidence 4
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-25 Score=244.83 Aligned_cols=277 Identities=17% Similarity=0.238 Sum_probs=241.7
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56788899998 77899999999999999999875552 3889999999999987555 899999999999999999
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
|++.+.+.+|...|.++.. ...++++|+.|.+|++|+++++..+..+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 9999999999999999976 33578899999999999999999999999999999999987 888999886 6
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeEEEEeCCCCCCCCceEEEccC
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
+.|.+||+.++++++.+.+|. ..|.++.+.+. ..+++|+.|++|++||+.++ +++.++..|.. .+.. +...
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~--l~~~ 422 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSS--LLLR 422 (537)
T ss_pred ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccc--cccc
Confidence 689999999999999999988 99999988765 89999999999999999999 89999888765 2333 3345
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeccccc-ccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 634 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 634 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
+++|++++.|++|++||..++..+..+.+ +...|.++++. ...+++++.|+++++|
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-----------------------~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-----------------------KEEILCSSDDGSVKLW 479 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-----------------------cceEEEEecCCeeEEE
Confidence 78999999999999999999999999988 56777766551 3567888999999999
Q ss_pred cccccC
Q 001367 713 KPLFAR 718 (1091)
Q Consensus 713 ~~~~~~ 718 (1091)
|+....
T Consensus 480 dl~~~~ 485 (537)
T KOG0274|consen 480 DLRSGT 485 (537)
T ss_pred ecccCc
Confidence 987543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=206.03 Aligned_cols=241 Identities=19% Similarity=0.278 Sum_probs=204.2
Q ss_pred CCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCc--EEEEEeCCCeEEEEeccC
Q 001367 798 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 798 ~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~la~g~~dg~i~iwd~~~ 874 (1091)
..|...++++|+ ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ .-. .|.+|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 469999999998 789999998 89999999999999999999999999999998 554 789999999999999999
Q ss_pred cceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe
Q 001367 875 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 954 (1091)
Q Consensus 875 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~ 954 (1091)
.+++..+++|.+.|+.++.+|.|++-++.+.|+.++.||+-+|+......+. . ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~---~------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK---N------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC---C------cceeeEEcCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999987743322222 1 234699999999999999
Q ss_pred cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeE
Q 001367 955 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1034 (1091)
Q Consensus 955 d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1034 (1091)
...|-+|.+.+-........ ..++.++.|. ++..|++|+.|+.|.+||..++...+.+. +|..+|..+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~ 256 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA 256 (362)
T ss_pred ccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheeeeE
Confidence 99999999987776655432 2456666665 46678899999999999999988777766 4677788775
Q ss_pred EEeCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 1035 IAAHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1035 ~~~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
.--.| ++.+|++++.||.|++||+...
T Consensus 257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 257 SYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecC-CceEEEEeccCceEEEEEcccc
Confidence 54555 5789999999999999999765
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=214.44 Aligned_cols=282 Identities=16% Similarity=0.194 Sum_probs=243.1
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..+.++...|... .+.+|+.|.++.++|..+++.+.. ++||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4788888888744 679999999999999999988865 88999999999999999999999
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC--CCcceEEEe
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGAPVYSLC 492 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~ 492 (1091)
+.|..|+||......+.. ....|..+|+.+...|.|. ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998876443 5678999999999999999 899999999999999999998876653 234578888
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEe
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
|+| ||.++.+|..||.+++||+.+......+.+|.++|..++|+.+|-+|+++.. ++.|++||++.-+..+++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 865 7789999999999999999999988899999999999999999999999986 5569999999988888887
Q ss_pred cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEE
Q 001367 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 573 ~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
... ...+.++.|.+.|.+++.++.+=.|++++-.+.. .+..+..+. ...+++.|....+++++++.|..++++.
T Consensus 429 l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 429 LDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeecccceEEeeccchhheEEee
Confidence 765 4579999999999999999888777777755543 444444443 3578999999999999999999988875
Q ss_pred C
Q 001367 651 T 651 (1091)
Q Consensus 651 ~ 651 (1091)
+
T Consensus 505 ~ 505 (506)
T KOG0289|consen 505 L 505 (506)
T ss_pred c
Confidence 4
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=219.25 Aligned_cols=268 Identities=21% Similarity=0.280 Sum_probs=223.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCccccee--------------EEE-eccccCeeEEEEcCCCCce
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ--------------LEI-DAHVGNVNDLAFSAPCKQI 456 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~--------------~~~-~~h~~~v~~~~~s~d~~~~ 456 (1091)
...|.-+|.+++++||+++..+++.+++|.=|++.+|+..+.. ..- .+|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5569999999999999999999999999999999988743111 011 27888999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEE
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1091)
+|++|+.|..|.|||..+.+.++.+.+|.+.|.+++|.- ....+++++.|+.|++|+++......++-+|...|.++.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999999999999999999999999954 345799999999999999999988889999999999998
Q ss_pred EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE
Q 001367 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1091)
...-++.+-+++. |.++++|++.. +....+.++. +.+.|++|-. ..++++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~---~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGE---GSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCC---CCeeeEEEec-ccceeeccCCceEEEeeecccCceeEe
Confidence 8888887777765 77799999943 3344566666 7899999975 468999999999999999999988776
Q ss_pred eCCCCC----------CCCceEEEccCCCEEEEEECCCeEEEEECCCC----Ceecccccccccceeeeec
Q 001367 617 DAGGGL----------PENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVN 673 (1091)
Q Consensus 617 ~~~~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~ 673 (1091)
....+. ..|++++..|...++++|+.+|.|++|.+..+ ..+..+. ..+-|++++|+
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 532211 26789999999999999999999999999987 2233333 45667777773
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=231.27 Aligned_cols=275 Identities=20% Similarity=0.252 Sum_probs=237.6
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
.-+.|+ ....||+|.. ..|++|+..++.... + ...+...|+++.|+++|. +|+.|..+|.|.|||..+.+.+.
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhccccc
Confidence 346788 4556777643 459999999987433 2 223378999999999999 89999999999999999999999
Q ss_pred EecC-CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee-ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 480 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 480 ~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
.+.+ |...|.+++|. +..+.+|+.++.|..+|++....... +..|...|..+.|++|++++++++. |+.+
T Consensus 254 ~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~ 325 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVV 325 (484)
T ss_pred cccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccce
Confidence 9998 99999999994 46899999999999999998877666 8889999999999999999999987 7779
Q ss_pred EEEecCCceeeEEEecccccccceEEEEEcCCC-CEEEE--EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCC
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1091)
.|||....+++..+..|. ..|.+++|+|-. ..|++ |+.|+.|++||..+++.+..+.... .|..+.|++..
T Consensus 326 ~Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~ 399 (484)
T KOG0305|consen 326 FIWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS---QVCSLIWSKKY 399 (484)
T ss_pred EeccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC---ceeeEEEcCCC
Confidence 999998889999999988 999999999975 45555 4489999999999999998887653 58999999988
Q ss_pred CEEEEE--ECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 635 TLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 635 ~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
+-|+++ ..++.|.||+..+...+..+.+|...|..+++ +|||..+++++.|.++++|
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~---------------------SPdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLAL---------------------SPDGETIVTGAADETLRFW 458 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEE---------------------CCCCCEEEEecccCcEEec
Confidence 766654 45789999999999999999999999999999 8899999999999999999
Q ss_pred cccc
Q 001367 713 KPLF 716 (1091)
Q Consensus 713 ~~~~ 716 (1091)
++-.
T Consensus 459 ~~f~ 462 (484)
T KOG0305|consen 459 NLFD 462 (484)
T ss_pred cccC
Confidence 9653
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=200.99 Aligned_cols=297 Identities=13% Similarity=0.166 Sum_probs=218.4
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
.+.+|.+|.++|++++||.||+ .||+++.|++|+||++..-+...-+.++ ..-.-+..+.++|+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R---------------~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIR---------------QNVEYDHPTRVVFA 141 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhh---------------ccccCCCceEEEEC
Confidence 4567899999999999999999 5699999999999999875433222211 11122367889999
Q ss_pred CCCCEEEEEEC-CCEEEEEEeeCCcc---ccee------EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 406 PDGSLLGVAYS-KHIVQLYAYHGGSD---ARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 406 pdg~~las~~~-d~~i~iwd~~~~~~---~~~~------~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
||-+-+++... ..++++|.+...+. .... .--+.|...|..+-....++ ++++++.|..|.+|++. |
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k--~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK--YIMSASLDTKICLWDLK-G 218 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce--EEEEecCCCcEEEEecC-C
Confidence 99887766544 45899998754322 1100 01124666788888887788 89999999999999988 9
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecC--------CCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--------SLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--------~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
+.+..+......-+..+. +|+|+++++++..-.|++|.+- .-...+.+.+|...|..++|+++.+.+++.
T Consensus 219 q~L~~idtnq~~n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred ceeeeeccccccccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 999888766666666666 5688999999999999999752 233455788999999999999999999999
Q ss_pred ecCCCCceEEEEEecCCc-------eeeEEEe--cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 548 GTSKEGESFLVEWNESEG-------AIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~-------~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
+. +|.+++||..-. +.++... .+. .......++++|+|+.|+.+ ....+.++..++|+....+..
T Consensus 297 Sk----DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 297 SK----DGKWRIWDTDVRYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELED 370 (420)
T ss_pred ec----CCcEEEeeccceEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHH
Confidence 86 667999997532 2222221 111 12334589999999877664 445799999999887766653
Q ss_pred CCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
-. ...|.+++|+++|++++++++ ..++++.-
T Consensus 371 ~h-~~~Is~is~~~~g~~~atcGd-r~vrv~~n 401 (420)
T KOG2096|consen 371 IH-STTISSISYSSDGKYIATCGD-RYVRVIRN 401 (420)
T ss_pred hh-cCceeeEEecCCCcEEeeecc-eeeeeecC
Confidence 22 236899999999999999875 67777653
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=200.41 Aligned_cols=270 Identities=20% Similarity=0.278 Sum_probs=213.5
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 413 (1091)
.+.|+.|.|+|.+..| ++++.||++++||+........ -.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~L-LvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDL-LVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCcE-EEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 4689999999998855 5556999999999988755432 23899999999997 567889
Q ss_pred EECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEee
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1091)
|+.||.|+.+|+.++... .+..|..+|.++.+++... .+++||.|++|++||.........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998755 3678999999999998766 79999999999999988765555554 3347888865
Q ss_pred cccCCceEEEEEecCCeEEEEecCCCCceeeecCC--CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc----ee
Q 001367 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG----AI 567 (1091)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~----~~ 567 (1091)
.+..|+.|+.+..+.+||+++.......... .-.+.++++-|++.-.++++- +|.|.+=.+... +.
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 4568999999999999999987766533322 336889999998877777765 444554333333 33
Q ss_pred eEEEecccc------cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 568 KRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 568 ~~~~~~~~~------~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
...|+.|.. ...+|++++|+|-.+.+++|+.||.|.+||+.+.+.+..+.... ..|..++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~--~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE--TSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC--CceEEEEeccCCCeEEEEe
Confidence 444555542 22479999999999999999999999999999999888876542 3589999999999999997
Q ss_pred C
Q 001367 642 N 642 (1091)
Q Consensus 642 ~ 642 (1091)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 6
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-21 Score=208.75 Aligned_cols=279 Identities=16% Similarity=0.219 Sum_probs=225.3
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC-ceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
..|+..-+.++|.|+|. ++.+++.||.|++|+...-. .... +.-++..|.+++.. +.
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~~--s~ 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIACY--SN 67 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEeec--cc
Confidence 37888999999999999 67888999999999987652 2211 22266777777764 55
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
+|++|+.+++|.+|...+++.-.. +...+-++.+++|+.+|+ +++.||.|-.|++-++.+......+++|.++|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~i---L~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTI---LARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccce---eeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence 999999999999999998875442 334567899999999999 899999999999999999999999999999999
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC--------CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
++.|+| ++.+|++.+-||.|++||++++.....+..- ...+..++|+|+|..+++... ++.|.+|+
T Consensus 143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~ 216 (933)
T KOG1274|consen 143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYS 216 (933)
T ss_pred eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEc
Confidence 999955 6679999999999999999988766654331 235678999999766666654 66799999
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
..+.+....+..... ...+..+.|+|+|+||++++.+|.|.|||.++-.. |.....|.+++|.|+.+.+-.-.
T Consensus 217 r~~we~~f~Lr~~~~-ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLS-SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred cCCceeheeeccccc-ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence 999998888876552 23489999999999999999999999999998222 33345689999999988776666
Q ss_pred CCCeEEEE
Q 001367 642 NENRIKIL 649 (1091)
Q Consensus 642 ~dg~i~iw 649 (1091)
..|...+|
T Consensus 290 ~~g~~~~~ 297 (933)
T KOG1274|consen 290 ALGTLGVS 297 (933)
T ss_pred eccccccC
Confidence 65655554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=200.11 Aligned_cols=252 Identities=20% Similarity=0.338 Sum_probs=208.4
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC--CCCceEEEEeeCCCcEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIK 468 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~ 468 (1091)
+...|+..|..+...--|++||+|+.|++|+|+.+..+.....+.+|.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 3567999999999888999999999999999999998877677789999999999999976 677 899999999999
Q ss_pred EEeCCCCc--eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc---eeeecCCCCcEEEEEEcCC---
Q 001367 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 540 (1091)
Q Consensus 469 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d--- 540 (1091)
||.-.+|+ .......|...|++++|.|..-|-.|++++.||.|.+.+++.... ......|.-.+++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99977774 345667899999999999999999999999999999999887622 2345667788999999986
Q ss_pred C-----------CEEEEEecCCCCceEEEEEecCCce--eeEEEecccccccceEEEEEcCCC----CEEEEEeCCCeEE
Q 001367 541 G-----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIK 603 (1091)
Q Consensus 541 ~-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~s~dg~i~ 603 (1091)
| +.|++++. |..|.+|+..+++ ..+.+.+|. +.|+.++|.|.- .++++++.||++.
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 4 56888876 6779999988763 344577777 999999999974 5789999999999
Q ss_pred EEECCCC--eeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 604 IWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 604 iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
||..+.. ....++ .+.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 237 Iwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9976532 111121 12223458999999999999999999999999754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=228.38 Aligned_cols=250 Identities=12% Similarity=0.175 Sum_probs=189.6
Q ss_pred EECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC-CCceEEEEeeCCCcEEEEeCCCCc--------eeEEecCC
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 484 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~ 484 (1091)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5567889999987653 34468899999999999997 56 89999999999999998642 34567899
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
...|.+++|+|.. ..++++++.|+.|++||+++......+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999997753 2356899999999999999888766665 4568999999999999998875 66799999999
Q ss_pred ceeeEEEecccccc--cceEEEEEcCCCCEEEEEeCCC----eEEEEECCC-CeeEEEEeCCCCCCCCceEEEccCCCEE
Q 001367 565 GAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1091)
Q Consensus 565 ~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1091)
++.+..+.+|.... ..+....|++++.++++++.++ .|++||+++ ++++..+..+.....+......+++.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999998887211 1123334568999999988664 799999985 6667666555443222233334568899
Q ss_pred EEEECCCeEEEEECCCCCeecccc--cccccceeeeeccc
Q 001367 638 AVIANENRIKILETPESNSVDAAG--VLSDNLRKLSVNPI 675 (1091)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~ 675 (1091)
++|..|+.|++|++..+.. ..+. .+..++.+++|.|.
T Consensus 279 lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred EEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 9999999999999987632 2222 24456667777554
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-20 Score=203.19 Aligned_cols=277 Identities=13% Similarity=0.172 Sum_probs=232.4
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCC-cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
..|+..-+.++|.|+|.+|.+++.||.|++|+.... +... .+..+...|.+++-. +. .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 358899999999999999999999999999998776 3222 233377778777764 44 699999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
..+++.-..+...+-++..+++ +.+|.+++.|+.|-.|++-+.........+.+|..+|.++.|+|++++||+...
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 9988776566666788999998 567889999999999999999999999999999999999999999999999876
Q ss_pred CCceEEEEEecCCceeeEEEeccccc-----ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCc
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1091)
+|.|++||+.++.+...+.+.... ...+..++|+|++..+++.+.|+.|.+|+..+......+........+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 778999999999887776654321 2345678999999999999999999999999999999988766555588
Q ss_pred eEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCC
Q 001367 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1091)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g 686 (1091)
.+.|+|+|+|||+++-+|.|.|||.++... ......|.+++|.|....+.+....|
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecc
Confidence 999999999999999999999999997322 44456788999988887776555554
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=200.78 Aligned_cols=329 Identities=10% Similarity=0.134 Sum_probs=241.9
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCC
Q 001367 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNED 692 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~ 692 (1091)
+..+.+| ...|..++.......+.+++.|.+-+||.++++.++....+|.+.|+++.|
T Consensus 141 vre~~GH--kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikf-------------------- 198 (481)
T KOG0300|consen 141 VRELEGH--KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKF-------------------- 198 (481)
T ss_pred hhhhccc--ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEe--------------------
Confidence 3444444 446888888877788999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccc
Q 001367 693 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 772 (1091)
Q Consensus 693 ~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 772 (1091)
.+.+.++++++.|++..+|.....-+..... .+.+|.+.- ....+........++ .+
T Consensus 199 -h~s~~L~lTaSGD~taHIW~~av~~~vP~~~---a~~~hSsEe-E~e~sDe~~~d~d~~----~~-------------- 255 (481)
T KOG0300|consen 199 -HNSGLLLLTASGDETAHIWKAAVNWEVPSNN---APSDHSSEE-EEEHSDEHNRDTDSS----EK-------------- 255 (481)
T ss_pred -ccccceEEEccCCcchHHHHHhhcCcCCCCC---CCCCCCchh-hhhcccccccccccc----cc--------------
Confidence 6678889999999999999843211100000 000010000 000000000000000 00
Q ss_pred eeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEc
Q 001367 773 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN 851 (1091)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 851 (1091)
..+..+........+|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|....+.++-+
T Consensus 256 ------------sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 256 ------------SDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred ------------cCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccC
Confidence 001111111111225999999999999999999999 8999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEeccCc-ceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCC
Q 001367 852 PHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG 930 (1091)
Q Consensus 852 ~~~~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 930 (1091)
| ..+++++.+.|.+.++||+... ..+..|+||.+.|+++.|.-| ..++++++|.+|+|||+.+-. ..+.+...
T Consensus 324 p-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR----splATIRt 397 (481)
T KOG0300|consen 324 P-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR----SPLATIRT 397 (481)
T ss_pred C-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeecccc----Ccceeeec
Confidence 9 8999999999999999999853 457889999999999999876 468899999999999998733 12233322
Q ss_pred CcCCCCCceEEEEcCCCCEEEEEe-cCeEEEEEcCCccee---eeeecCCccCEEEEEEeeCC--CEEEEEEcCCcEEEE
Q 001367 931 VMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCL---KQWFPISSVPISQATFSCDC--RMVFTSFVDGTLSIH 1004 (1091)
Q Consensus 931 ~~~~~~~i~~l~fs~dg~~la~~~-d~~i~vwd~~~~~~~---~~~~~~h~~~v~~v~fs~dg--~~l~t~~~dg~v~iw 1004 (1091)
. .++..++.+..+..||.-. +..|++||+...... +.-..+|..-|.+++|+.+- .-|++++-|..+.-|
T Consensus 398 d----S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 398 D----SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred C----CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence 2 2588899999999999954 568999999754432 22346789999999999765 348899999999999
Q ss_pred eCCC
Q 001367 1005 EASN 1008 (1091)
Q Consensus 1005 d~~~ 1008 (1091)
++..
T Consensus 474 ~in~ 477 (481)
T KOG0300|consen 474 KINT 477 (481)
T ss_pred Eecc
Confidence 8764
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=199.36 Aligned_cols=272 Identities=16% Similarity=0.227 Sum_probs=222.1
Q ss_pred EEEEECCCEEEEEEeeCCc---------ccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe
Q 001367 411 LGVAYSKHIVQLYAYHGGS---------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1091)
+++|+....|.=+++.-.. .+.+...+..|.++|++++.+ +. ++++||.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence 4555555555544443211 123344677899999999985 56 8999999999999999999999999
Q ss_pred cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
..|.+.|+++.|.+......|++|+.||.|.+|+...-.....++.|.+.|+.++.+|.|+..++.+. |..+++||
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~----D~~lr~WN 155 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG----DQVLRTWN 155 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC----Cceeeeeh
Confidence 99999999999976655558999999999999999999889999999999999999999999998875 77899999
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
+-+|+.-....-.. ....+.|+|.|.+++.++.+ .|-+|.+++......+.... .+.++.|. ++..|++|.
T Consensus 156 LV~Gr~a~v~~L~~----~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~---r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKN----KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPK---RILCATFL-DGSELLVGG 226 (362)
T ss_pred hhcCccceeeccCC----cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccc---cceeeeec-CCceEEEec
Confidence 99988766655433 44559999999998888765 58999998877776665432 34555554 467899999
Q ss_pred CCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccC
Q 001367 642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFAR 718 (1091)
Q Consensus 642 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~ 718 (1091)
+|+.|.+||.....+...+.+|...|-.+.+-- .|++.+++++++||.|++||++...
T Consensus 227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~-------------------~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYT-------------------NPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCceEEEeccCCCccceeeecchhheeeeEEEe-------------------cCCceEEEEeccCceEEEEEccccc
Confidence 999999999999999999999999999887421 6788999999999999999988653
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=214.40 Aligned_cols=287 Identities=14% Similarity=0.183 Sum_probs=229.1
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.|..-|.++++|...++ +.||+. |-|+|||+....... +....-.-....-|.++.++|||+.|
T Consensus 417 ~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred ccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEecCCCceE
Confidence 46668888999998885 588876 889999996542211 00000011245789999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|.||...+.||
T Consensus 481 ivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 9999999999999987542 22223333344678899999999 88999999999999999999999999999999999
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEE
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1091)
.+ +++|..|.+|+.|.+|+.||++++........ ...|.++..+|.+.+++++-. ++.+.+...... ....+
T Consensus 558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~skp-~kyql 629 (705)
T KOG0639|consen 558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSKP-EKYQL 629 (705)
T ss_pred Ee--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecCCc-cceee
Confidence 98 56888999999999999999998877665443 347899999999999999976 445666664433 33344
Q ss_pred ecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 572 ~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
..|. ..|.++.|.+.|+++++.+.|..+..|.+.-|..+...... ..|.++.+|.|.+++++|+.|..-.+|.+
T Consensus 630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4444 89999999999999999999999999999988877766543 46899999999999999999988888864
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-21 Score=210.53 Aligned_cols=515 Identities=16% Similarity=0.176 Sum_probs=324.2
Q ss_pred eccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCc-eEEEEEecCCeEEEEec
Q 001367 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLY 516 (1091)
Q Consensus 438 ~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~ 516 (1091)
.|-...-....||+|+++ ++.+. +..|.||...+|.++..+.+|..++.++.+.+.+.. .++++++.+|.|++||.
T Consensus 13 gg~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~ 89 (792)
T KOG1963|consen 13 GGRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDW 89 (792)
T ss_pred ccccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecC
Confidence 333334445689999994 44333 568999999999999999999999999999877664 68889999999999999
Q ss_pred CCCCceeeecCCCCcEEEEEEcC---CCCEEEEEecCCCCceEEEEEecCCceee-----EEEecccc----cccceEEE
Q 001367 517 DSLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIK-----RTYQGLQL----QHNSVSVV 584 (1091)
Q Consensus 517 ~~~~~~~~~~~~~~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~~~~~-----~~~~~~~~----~~~~v~~v 584 (1091)
..+.....+.... ++..+.+.| +-...+..+. +....+........... .++..... ....-.++
T Consensus 90 ~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 90 SDGELLKTFDNNL-PVHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred CCcEEEEEEecCC-ceeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 9888777665543 333333322 1111111111 00111111111111111 11111100 00114567
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE-e-CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccc
Q 001367 585 HFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-D-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 585 ~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
.+++.+.+....- +..+.+|+..++...... . ...+...+++++++|+++++|++..||.|.+|.--.. ..
T Consensus 167 ~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~~ 239 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------SD 239 (792)
T ss_pred EEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------cc
Confidence 7788776655554 456888888775411110 0 0112223689999999999999999999999974321 00
Q ss_pred ccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEe
Q 001367 663 LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 742 (1091)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 742 (1091)
.. -+.++|.. |...|.+++|+
T Consensus 240 ~~------------------------------------------~t~t~lHW-----------------H~~~V~~L~fS 260 (792)
T KOG1963|consen 240 DS------------------------------------------ETCTLLHW-----------------HHDEVNSLSFS 260 (792)
T ss_pred cc------------------------------------------ccceEEEe-----------------cccccceeEEe
Confidence 00 11111111 66789999999
Q ss_pred cCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-C
Q 001367 743 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G 821 (1091)
Q Consensus 743 ~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d 821 (1091)
++|.+|++|+..|.+.+|.+.+++. .. ++ .-..+|..+.+|||+.+.+... |
T Consensus 261 ~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 261 SDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred cCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEecC
Confidence 9999999999999999998765421 11 11 2567899999999999887765 8
Q ss_pred CeEEEEEccCceeEEEecCC-----------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec--------
Q 001367 822 GVISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------- 882 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-------- 882 (1091)
+.|.+....+.....++.+. .+-.+.++++| .-+.++..+..|.|.+||+.+.+.+..+.
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~ 392 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSD 392 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccC
Confidence 99999888766555544432 23457788999 66778888999999999998876654442
Q ss_pred ---cccCCeEEEEECCCCCEEEEEeC--------CC--cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEE-cCCCC
Q 001367 883 ---GHSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF-HKDQT 948 (1091)
Q Consensus 883 ---~h~~~V~~l~~spdg~~las~s~--------Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f-s~dg~ 948 (1091)
.+.-.+++++.+-.|.+++|.-. || .+++|-.......-.........|.. .+...+| ++...
T Consensus 393 ~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~---~~vat~~~~~~rs 469 (792)
T KOG1963|consen 393 GDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN---AFVATIFLNPTRS 469 (792)
T ss_pred CcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc---eeEEEEEecCccc
Confidence 12345888888989999998642 33 47889876644322222222222222 2333333 33333
Q ss_pred -EEEE-EecCeEEEEEcCCcceeee---------eecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC-CceEEEee
Q 001367 949 -RFLL-VHETHLAIYEAEELTCLKQ---------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRIL 1016 (1091)
Q Consensus 949 -~la~-~~d~~i~vwd~~~~~~~~~---------~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~-~~~~~~~~ 1016 (1091)
..++ +.||.+++|-....+.+.. .-.-|..++++++||.||..|+ .+.|++|.+||..+ .++.+...
T Consensus 470 ~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~ 548 (792)
T KOG1963|consen 470 VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEG 548 (792)
T ss_pred ceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcccc
Confidence 4555 6899999998843322211 1112688999999999997666 55788999999998 55554444
Q ss_pred cccccCCCCcccccceeEE-EeCCCCCCeEEEEecCCcEEEEecCCCCCCc
Q 001367 1017 STAYLRPTTSCLHVYPHAI-AAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1066 (1091)
Q Consensus 1017 ~~~~~~~~~~~~~v~~~~~-~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~~ 1066 (1091)
...+. +...+. +-.+. ...+.....+.+.+|++......|
T Consensus 549 ~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 549 SRNWP--------IAELLFTAQTQN--DGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccccc--------hHhHhhhccccc--ccceeeccCceEehHhhhhhheec
Confidence 22211 111111 11221 234455667889999999888878
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=220.18 Aligned_cols=278 Identities=15% Similarity=0.211 Sum_probs=230.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeE-EEEcCCCCceEEEEeeCCCcEEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-LAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
+.||...|..+++.++. .+++++.||++++|+-..++.+.. ..+.+|.+-|.. +++.+..+. .+++|+.|++|.+|
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKG-RLVVGGMDTTIIVF 86 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccc-eecccCcceeeccceeccccCc-ceEeecccceEEEE
Confidence 88999999999987655 889999999999999887665542 356778887777 888763332 69999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
...+..++..+.+|...|+++.. ..++ .+++||.|.++++|.. ++....+.+|...|.++..-|++ .+++++.
T Consensus 87 ~~~~~~P~~~LkgH~snVC~ls~--~~~~-~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa- 159 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGHKSNVCSLSI--GEDG-TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSA- 159 (745)
T ss_pred ecCCCCchhhhhccccceeeeec--CCcC-ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccC-
Confidence 99999999999999999999976 3343 4999999999999954 45556689999999999999988 6667765
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
|..|++|.- ++.+++|.+|. ..|+.+++-++ ..+++++.||.|+.|++ +|+.+....+|.. .++++..
T Consensus 160 ---DKtIklWk~--~~~l~tf~gHt---D~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn--~vYsis~ 227 (745)
T KOG0301|consen 160 ---DKTIKLWKG--GTLLKTFSGHT---DCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN--FVYSISM 227 (745)
T ss_pred ---cceeeeccC--Cchhhhhccch---hheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccce--EEEEEEe
Confidence 667999985 88899999988 99999999886 46899999999999999 7777777766654 6899998
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
..++..+++++.|++++||+.. .+.+.+..+...++++.+-+ +| -+++|++||.||
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~---------------------Ng-DIvvg~SDG~Vr 283 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL---------------------NG-DIVVGGSDGRVR 283 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee---------------------CC-CEEEeccCceEE
Confidence 8888999999999999999987 67777777777888877633 22 367888999999
Q ss_pred ccccc
Q 001367 711 VEKPL 715 (1091)
Q Consensus 711 ~w~~~ 715 (1091)
+|...
T Consensus 284 VfT~~ 288 (745)
T KOG0301|consen 284 VFTVD 288 (745)
T ss_pred EEEec
Confidence 99865
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=210.88 Aligned_cols=266 Identities=16% Similarity=0.242 Sum_probs=211.8
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC-C
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 408 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g 408 (1091)
...|.++|..+.+-|....++|+++..+.|.|||+.+-.-..... +.| .+...+.||+..=..++|++. .
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------~~~---~Pdl~L~gH~~eg~glsWn~~~~ 190 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------GEC---RPDLRLKGHEKEGYGLSWNRQQE 190 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------ccC---CCceEEEeecccccccccccccc
Confidence 346888999999999999899999999999999987643332100 011 122348899988888999994 5
Q ss_pred CEEEEEECCCEEEEEEeeCCcc----cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC--CCceeEEec
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE 482 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~ 482 (1091)
-+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.+...
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCccccc
Confidence 6889999999999999986543 5556678899999999999998776 79999999999999999 566677888
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
+|.++|++++|.|.. +..||+|+.|++|.+||+++... ...+..|...|..+.|||....+++.+. .++.+.+||
T Consensus 270 ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWD 345 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWD 345 (422)
T ss_pred ccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEe
Confidence 999999999998874 57999999999999999998664 5588999999999999997765554432 277899999
Q ss_pred cCCceee-----------EEEecccccccceEEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 001367 562 ESEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 609 (1091)
Q Consensus 562 ~~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd~~~ 609 (1091)
+..-... ..+-.|.+|...|..+.|+|+..++++ .++|+.+.||.+..
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 8743221 122334445589999999999988765 78999999999763
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=205.06 Aligned_cols=289 Identities=15% Similarity=0.229 Sum_probs=222.6
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCCCCCCceEEEccCCC-EEEEEECCCeEEEEECCCC
Q 001367 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1091)
Q Consensus 578 ~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~ 654 (1091)
.+.|+++.|+|..+.+++++.|++++||.++.. ..++.+.... .+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecCCCceEEEecccceEEEEeecccc
Confidence 468999999999999999999999999988654 3445554443 3789999999998 8888888889999998755
Q ss_pred CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccc
Q 001367 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 734 (1091)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 734 (1091)
+....-+ +
T Consensus 291 k~~k~~~---------------------------------~--------------------------------------- 298 (514)
T KOG2055|consen 291 KVTKLKP---------------------------------P--------------------------------------- 298 (514)
T ss_pred ccccccC---------------------------------C---------------------------------------
Confidence 3221100 0
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.| . ....+..+.+||+++
T Consensus 299 ---------~g------------------------------------------~-----------e~~~~e~FeVShd~~ 316 (514)
T KOG2055|consen 299 ---------YG------------------------------------------V-----------EEKSMERFEVSHDSN 316 (514)
T ss_pred ---------CC------------------------------------------c-----------ccchhheeEecCCCC
Confidence 00 0 122344566777777
Q ss_pred EEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccC-CeEEEE
Q 001367 815 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGLV 892 (1091)
Q Consensus 815 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~-~V~~l~ 892 (1091)
+|+..+ .|.|.+....|++.+.+++ ..+.|..++|+. +++.|.+.+.+|.|.+||+....++.++....+ .-++++
T Consensus 317 fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~ 394 (514)
T KOG2055|consen 317 FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLC 394 (514)
T ss_pred eEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeee
Confidence 777776 5778888888888887776 667899999998 788888888899999999999998888874322 346678
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCce-eeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE---ecCeEEEEEcCCcce
Q 001367 893 FSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTC 968 (1091)
Q Consensus 893 ~spdg~~las~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~---~d~~i~vwd~~~~~~ 968 (1091)
.|++|.+||+||..|.|.|||.++.-. ...+++........ .|++++|++|+..||.+ ..+.+++-.+.+...
T Consensus 395 ~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt---~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV 471 (514)
T KOG2055|consen 395 ISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT---AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV 471 (514)
T ss_pred ecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe---eeeeeeeCcchhhhhhhhhccccceEEEeccceee
Confidence 889999999999999999999765221 11234444444433 79999999999999984 456899999888777
Q ss_pred eeeeecCC--ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 969 LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 969 ~~~~~~~h--~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
...|.... -+.|+|++|||.|.+||.|..+|.|.+|.+.
T Consensus 472 FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 472 FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 76665432 5689999999999999999999999999874
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=191.98 Aligned_cols=319 Identities=13% Similarity=0.191 Sum_probs=233.4
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CCC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 409 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 409 (1091)
..|.+.|..+...+...+++.+|+.||.|.|||++........-+ +-+ ..|. .....-.+|.-.|..+.|-| |..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecCc
Confidence 568889999999987656889999999999999976542211000 000 0111 12233568999999999999 777
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCC-ceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
.+.+++.|.+++|||..+-+... .+ .-.+.|.+-++||-.. ..++++|..|-.|++-|+.+|.+-+++.||.+.|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred eeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 88999999999999999865433 23 3456788888888543 3367788888899999999999999999999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
.++.|+|..+ -.|++|+.||.|++||++... +..++.|..+++..
T Consensus 192 laV~Wsp~~e-~vLatgsaDg~irlWDiRras----------------------------------gcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 192 LAVEWSPSSE-WVLATGSADGAIRLWDIRRAS----------------------------------GCFRVLDQHNTKRP 236 (397)
T ss_pred EEEEeccCce-eEEEecCCCceEEEEEeeccc----------------------------------ceeEEeecccCccC
Confidence 9999988754 688999999999999987531 11333333333322
Q ss_pred EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC----CCCCCceEEEccCCCEEEEEECCC
Q 001367 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----GLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
..++....|.+.+..++|+.++.++++.+.|..+++|+..+|+....-.++. ....-..+. +.+...++..-.++
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~ 315 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG 315 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC
Confidence 3333233345899999999999999999999999999999886543221110 000001122 33445566666679
Q ss_pred eEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccc
Q 001367 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKP 714 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~ 714 (1091)
.+.++++-++..++.+..|...+.+.++ .|+-+...++..|+.+..|..
T Consensus 316 ~lall~~~sgs~ir~l~~h~k~i~c~~~---------------------~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 316 SLALLNLLEGSFVRRLSTHLKRINCAAY---------------------RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eEEEEEccCceEEEeeecccceeeEEee---------------------cCchhhhhccccCCccccccc
Confidence 9999999999999999999888888887 666777888888888888875
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=205.30 Aligned_cols=287 Identities=14% Similarity=0.214 Sum_probs=233.5
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC-EEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGV 413 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las 413 (1091)
+.|++|.|+|..+ +|.+++.||+++||.+.........++ .--..+|.+.+|.|+|. .+++
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~-----------------~l~~fPi~~a~f~p~G~~~i~~ 275 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSI-----------------HLEKFPIQKAEFAPNGHSVIFT 275 (514)
T ss_pred CCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheee-----------------eeccCccceeeecCCCceEEEe
Confidence 4999999999998 789999999999999865443322221 12457999999999999 8899
Q ss_pred EECCCEEEEEEeeCCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEe
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 492 (1091)
++.....+.||+.+.+..+ +..+.++. ..+.....|++++ +|+..|..|.|.+.-..+++.+.+++ -.+.|..++
T Consensus 276 s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~ 351 (514)
T KOG2055|consen 276 SGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT 351 (514)
T ss_pred cccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence 9999999999999977543 33444554 3677888999999 89999999999999999999998886 677899999
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC-cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC------c
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------G 565 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~------~ 565 (1091)
|+ .++..|++++.+|.|.+||++....+..+...++ .-++++.++++.++|+|+. .|.|.|||..+ .
T Consensus 352 fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 352 FS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTNP 425 (514)
T ss_pred Ee--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCCC
Confidence 95 5778999999999999999999988887765544 4578889999999999976 67899999653 3
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCC-CCCCCCceEEEccCCCEEEEEEC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
+++..+.... ..|+++.|+++.+.|+.+| .+..+++-++.+......++.. .....|+|++|+|.+.++|+|..
T Consensus 426 kPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 426 KPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred Cchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 4555555544 7899999999999988877 5678999998887766665543 33456899999999999999999
Q ss_pred CCeEEEEECC
Q 001367 643 ENRIKILETP 652 (1091)
Q Consensus 643 dg~i~iwd~~ 652 (1091)
+|.+.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 9999999864
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=193.13 Aligned_cols=299 Identities=15% Similarity=0.196 Sum_probs=223.3
Q ss_pred CCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE
Q 001367 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1091)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1091)
..|.++..+|.... -.|+.||+.|. +||+|..||.|.|||+.|...-+. +.+|..+|+
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~ 69 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT 69 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence 45777777776443 79999999997 789999999999999998764433 889999999
Q ss_pred EEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
+++||+||+.|++++.|..|.+||+..|..+++. ....+|+.+.|.|-.....+++- .+..-.+-++..++.. .
T Consensus 70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~-~ 143 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHS-V 143 (405)
T ss_pred EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCcee-e
Confidence 9999999999999999999999999999877643 25678999999997766344433 3444455555443211 1
Q ss_pred ec-CCCcceEEE--eecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC-CcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 481 FE-GHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 481 ~~-~~~~~v~~~--~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
+. ...+..... +-...+.|+++++|...|.+.++|.++.+....++... ..|..+.++..|++++..+. +..
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 11 111111111 11235678899999999999999999998888777766 78999999999999999876 778
Q ss_pred EEEEecCCc-------e--eeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCc
Q 001367 557 LVEWNESEG-------A--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1091)
Q Consensus 557 i~iwd~~~~-------~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1091)
|+.|+++.- + +.+.++..- .+..-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ ....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~ 297 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELL 297 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hhee
Confidence 999987621 1 112222111 123456789999999998876 456799999999999999987654 2467
Q ss_pred eEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 627 RICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
.+.|+|-...+++. ..|.+++|.....
T Consensus 298 DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 298 DVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ecccccceeeeeec-cCCceEEEEeecc
Confidence 78899988777777 6699999987643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=203.90 Aligned_cols=293 Identities=15% Similarity=0.206 Sum_probs=229.9
Q ss_pred EEEEEcCC-CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC-CCEEEEEEee
Q 001367 349 LLLVGTNV-GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYH 426 (1091)
Q Consensus 349 llasg~~d-g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~~i~iwd~~ 426 (1091)
++.+++.| .++.+||+.||....+.. .+. .+.+|.- -+. .+.|++++.. ...+.+|.+.
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~yk-------g~~------~a~~~sl----~~l--~~~yllsaq~~rp~l~vw~i~ 69 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYK-------GSY------LAQAASL----TAL--NNEYLLSAQLKRPLLHVWEIL 69 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEec-------Ccc------cccchhh----hhh--chhheeeecccCccccccccC
Confidence 34444555 459999999998765411 000 0111110 011 2367777754 4579999997
Q ss_pred CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEe
Q 001367 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506 (1091)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 506 (1091)
......+. .--.++|.+++-+|+|. +|+.|+..|.|++|.+.+|..+..+.+|...|+++.| +.||.+|++|+
T Consensus 70 k~~~~~q~---~v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTgs 142 (476)
T KOG0646|consen 70 KKDQVVQY---IVLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITGS 142 (476)
T ss_pred chhhhhhh---cccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEecC
Confidence 65544322 12456899999999998 7888889999999999999999999999999999999 66889999999
Q ss_pred cCCeEEEEecC---------CCCceeeecCCCCcEEEEEEcCC--CCEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 507 VDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 507 ~dg~i~iwd~~---------~~~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
.||.|.+|++- +......+..|.-+|+.+...+- ..++++++. |.++++||+..|.++..+....
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecCC
Confidence 99999999763 34456678889999999887764 457888876 7789999999999988887644
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------------eeEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001367 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1091)
.+.+++.+|.+..+++|+++|.|.+.++..- ..+..+.+|.....|+|++++-||.+|++
T Consensus 219 ----si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 219 ----SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred ----cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 8999999999999999999999999876532 23344555555458999999999999999
Q ss_pred EECCCeEEEEECCCCCeecccccccccceeeeeccc
Q 001367 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
|+.||.+.|||+.+.++++++....++|+.+.+.|.
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 999999999999999999998888889999888654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-21 Score=209.27 Aligned_cols=289 Identities=11% Similarity=0.052 Sum_probs=211.7
Q ss_pred EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE-EEEECCCEEEEEEeeC
Q 001367 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG 427 (1091)
Q Consensus 349 llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~~ 427 (1091)
++++++.|+.|.+||+.+++.+.. +.++ ..+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 678999999999999999886653 3333 346789999999987 5667889999999998
Q ss_pred CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec
Q 001367 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507 (1091)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 507 (1091)
++... .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++++ +++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence 76543 3434433 567899999984 345556789999999999888777753 2345677774 56778888877
Q ss_pred CC-eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc----cccceE
Q 001367 508 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS 582 (1091)
Q Consensus 508 dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~ 582 (1091)
++ .+.+||..+......... .....+++|+|+++++++.+. .++.|.+||+.+++.+..+..+.. ......
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789877655443322 234567899999998876542 256799999999987776653210 011234
Q ss_pred EEEEcCCCCEEEE-EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE-CCCeEEEEECCCCCeeccc
Q 001367 583 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA 660 (1091)
Q Consensus 583 ~v~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1091)
.++|+|+++++++ .+.++.+.+||..+++.+..+.... .+.+++|+|+|++|+++. .++.|.+||+.+++.+..+
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCC---CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6889999998665 4557789999999988876654322 478999999999998864 5899999999999888877
Q ss_pred ccccccceeeeec
Q 001367 661 GVLSDNLRKLSVN 673 (1091)
Q Consensus 661 ~~~~~~v~~~~~~ 673 (1091)
... ...+.++++
T Consensus 288 ~~~-~~~~~~~~~ 299 (300)
T TIGR03866 288 KVG-RLPWGVVVR 299 (300)
T ss_pred Ecc-cccceeEeC
Confidence 654 333666553
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=204.16 Aligned_cols=456 Identities=13% Similarity=0.123 Sum_probs=292.2
Q ss_pred CeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce
Q 001367 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 522 (1091)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 522 (1091)
.|..++|-|||.+++++. +..+.+||...|..++++++|...|+++++ +.||..+++|+.|+.|.+|+-.-....
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEeccccccee
Confidence 799999999999744443 337999999999999999999999999999 568899999999999999965432222
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeE
Q 001367 523 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1091)
Q Consensus 523 ~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i 602 (1091)
--.|+..|.|+.|+|-...|++|+-+. .-+|........+ .+. ...+.+++|..||++++.|-.+|+|
T Consensus 89 --kYSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K-~ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 89 --KYSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSK-HKS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred --eeccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHh-hhh----heeEEEeeecCCCcEEEEeccCceE
Confidence 224778999999999999999998542 6678765543322 111 2578899999999999999999999
Q ss_pred EEEECCCCeeEEEEeCCCCCCCCceEEEccCC-----CEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccc
Q 001367 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677 (1091)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 677 (1091)
.+-+....+.+..-...+...+|.+++|+|.. ..+++.....++.++.+... .+..-+...-.-.|+.+
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisY----- 230 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISY----- 230 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhhee-----
Confidence 99876544444444444556789999999953 46788888888888877633 22222222222223333
Q ss_pred cccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceE
Q 001367 678 VTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 757 (1091)
Q Consensus 678 ~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i 757 (1091)
-++|.+++.|+.|+.+.+|.-+.-.- .++ . .....|..++..|++++++.++.||++
T Consensus 231 ----------------f~NGEy~LiGGsdk~L~~fTR~GvrL---GTv--g--~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 231 ----------------FTNGEYILLGGSDKQLSLFTRDGVRL---GTV--G--EQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred ----------------ccCCcEEEEccCCCceEEEeecCeEE---eec--c--ccceeEEEEEEccCCceEEEEEccCee
Confidence 67888999999999888887441111 111 1 146789999999999999999999999
Q ss_pred EEeecCCccccc---------------------ccce---------------------eeccCCccccCCCCCceeeecC
Q 001367 758 LMWRWPRNDLTL---------------------STEA---------------------TTKVPPRLYQPRHGPQFMVNDT 795 (1091)
Q Consensus 758 ~vw~~~~~~~~~---------------------~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 795 (1091)
..|++-.+.... .+.. .-...+.+|...++. ......
T Consensus 288 ACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~-~~~mhY 366 (1081)
T KOG1538|consen 288 ACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSED-LSDMHY 366 (1081)
T ss_pred ehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccc-cccchh
Confidence 999986544300 0000 000112223222222 000000
Q ss_pred CCC-CCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEE--EEEcCCCCcEEEEEeCCCeEEEEec
Q 001367 796 TDS-NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATS--LAFNPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 796 ~~~-~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~--l~~s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
+.. .-.....+--+--.+..++.+.+..+..+|...-+. +... -.+-|+- +.=.|.+..-|++|..||.|.-.=+
T Consensus 367 ~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~ 444 (1081)
T KOG1538|consen 367 RVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFV 444 (1081)
T ss_pred HHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEe
Confidence 000 000001111111134455666666777777543211 1100 0000111 1112225567888998986654434
Q ss_pred cCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 873 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 873 ~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
++.-++.. ......|.|+..+...+.||+..+.++..++|+.+++. .++.+ .+.+++|+....-+.+
T Consensus 445 dN~~PiLl-~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT~~E~Mlc 511 (1081)
T KOG1538|consen 445 DNLFPILL-LKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNTQCEDMLC 511 (1081)
T ss_pred cCCchhhe-ecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeeccccceEE
Confidence 44333322 23456799999999999999999999999999999763 22322 4778999887655554
Q ss_pred -EecCeEEE
Q 001367 953 -VHETHLAI 960 (1091)
Q Consensus 953 -~~d~~i~v 960 (1091)
+..|.+.|
T Consensus 512 fT~~g~L~V 520 (1081)
T KOG1538|consen 512 FTGGGYLNV 520 (1081)
T ss_pred EecCCceEE
Confidence 55565544
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=188.63 Aligned_cols=255 Identities=16% Similarity=0.206 Sum_probs=203.9
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC--
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-- 406 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-- 406 (1091)
.-.+|.+.|..+...--|++ |||++.|++|+|+.+....... ....|.||+++|..++|..
T Consensus 6 idt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk 68 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPK 68 (299)
T ss_pred hhhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccc
Confidence 34689999999999888984 6999999999999998765421 1223899999999999987
Q ss_pred CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-c--eeEEecC
Q 001367 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFEG 483 (1091)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~--~~~~~~~ 483 (1091)
-|.+||+++.||.|.||.-++|+ ..+..+...|...|++++|.|.+--+.|++++.||.|.|.+.++. . .......
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 89999999999999999999884 444556778999999999999988889999999999999987654 1 2234568
Q ss_pred CCcceEEEeecccCC-c-----------eEEEEEecCCeEEEEecCCCCc--eeeecCCCCcEEEEEEcCCC----CEEE
Q 001367 484 HGAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLF 545 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~----~~l~ 545 (1091)
|.-.|+++++.|..- | ..|++|+.|..|+||+.++..- ...+..|...|..++|.|.- .+|+
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 999999999977521 1 5699999999999999987632 23478899999999999964 4678
Q ss_pred EEecCCCCceEEEEEecCCc--ee-eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001367 546 SCGTSKEGESFLVEWNESEG--AI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~--~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1091)
+|+. ++.+.||..... .. ...+.... ..+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 228 S~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 228 SCSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 8875 667999976521 11 11222222 679999999999999999999999999754
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-20 Score=204.93 Aligned_cols=279 Identities=17% Similarity=0.233 Sum_probs=199.2
Q ss_pred CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEE-EEEECCCeEEEEECCCCCeeccccccccccee
Q 001367 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1091)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1091)
..+++++.|+.+++||+.+++.+..+..+.. +..++|+|+++.+ ++++.++.|++||..+++....+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------- 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS------- 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-------
Confidence 4678889999999999999998888875433 5779999999876 5566788999998765422211100
Q ss_pred eeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE
Q 001367 670 LSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 670 ~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
T Consensus 72 -------------------------------------------------------------------------------- 71 (300)
T TIGR03866 72 -------------------------------------------------------------------------------- 71 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEE
Q 001367 750 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLY 827 (1091)
Q Consensus 750 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iw 827 (1091)
+ ..+..++++|+++.+++++ ++.+++|
T Consensus 72 --------------------------------------------------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 72 --------------------------------------------------G-PDPELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred --------------------------------------------------C-CCccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 0 0122455666666555443 5778888
Q ss_pred EccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEE-eC
Q 001367 828 IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-GG 905 (1091)
Q Consensus 828 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-s~ 905 (1091)
|+.+++.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.. ...+.+++|+|+|++|+.+ ..
T Consensus 101 d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~ 177 (300)
T TIGR03866 101 DIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEI 177 (300)
T ss_pred ECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCC
Confidence 8887777666652 33467899999 888888888765 577889988877655432 2346789999999988544 46
Q ss_pred CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE--EecCeEEEEEcCCcceeeeeecCCccCEEEE
Q 001367 906 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQA 983 (1091)
Q Consensus 906 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v 983 (1091)
++.|++||+.+++............+.. ......++|+|+|+++++ +.++.+.+||..+++.+.... +...+.++
T Consensus 178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~ 254 (300)
T TIGR03866 178 GGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQL 254 (300)
T ss_pred CCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceE
Confidence 9999999999876433221111111100 112457899999998655 456789999999888776543 34578999
Q ss_pred EEeeCCCEEEEE-EcCCcEEEEeCCCCceEEEee
Q 001367 984 TFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 984 ~fs~dg~~l~t~-~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
+|+|+|++|+++ +.+|.|.+||+.+++.+.++.
T Consensus 255 ~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 255 AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 999999999876 468999999999999987776
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=186.89 Aligned_cols=305 Identities=14% Similarity=0.165 Sum_probs=218.1
Q ss_pred cccccEEEEEEec-CCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEe
Q 001367 731 VKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 809 (1091)
Q Consensus 731 ~~~~~i~~~~~s~-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 809 (1091)
.|.+.|.++.+.+ .|+++++++.||.+.+||+............... .|+... -...+|...|..+.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~----------~c~v~~-~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH----------KCIVAK-QHENGHKYAISSAIW 109 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe----------eeeccc-cCCccceeeeeeeEE
Confidence 3788999999876 5899999999999999999765432211111110 111111 112368899999999
Q ss_pred cCC-CCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEeccCcceeeeecccc
Q 001367 810 SKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHS 885 (1091)
Q Consensus 810 s~d-g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~ 885 (1091)
-|- .-++.+++ |.++++||..|.+....|+ -.+.|.+-++||- ...++|+|..|-.|++.|+.+|.....+.||.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 884 44555555 8999999999998888876 4556777777762 23588999999999999999999999999999
Q ss_pred CCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCc-eee------eeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecC
Q 001367 886 KRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWG-IQT------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 956 (1091)
Q Consensus 886 ~~V~~l~~spdg~~-las~s~Dg~i~vwd~~~~~-~~~------~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~ 956 (1091)
+.|.++.|||...+ |++|+.||.|++||+.... +.. .+..+..+....+.+.+..++|+.||.++++ +.|.
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 99999999998776 7899999999999998641 100 0111112222233357899999999999998 8999
Q ss_pred eEEEEEcCCcceeeeeecC--Cc---cCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccc
Q 001367 957 HLAIYEAEELTCLKQWFPI--SS---VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1031 (1091)
Q Consensus 957 ~i~vwd~~~~~~~~~~~~~--h~---~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1031 (1091)
.+++|+..+|+.-...+.. |+ +.-..+. +.+...++---.++.+.++++-+|..+..+. .|...|
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~--------~h~k~i- 338 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS--------THLKRI- 338 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee--------ccccee-
Confidence 9999999988643321111 11 1111133 4444455555567899999999999887776 222223
Q ss_pred eeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 1032 PHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1032 ~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
.|.++.| +=+...+|..|+.+..|-+
T Consensus 339 -~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 339 -NCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -eEEeecC-chhhhhccccCCccccccc
Confidence 3667888 4678999999999999987
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=203.68 Aligned_cols=283 Identities=12% Similarity=0.151 Sum_probs=231.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc---eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEE
Q 001367 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~ 603 (1091)
.|+.-|..+++|...+++++|+ .+.|.+||+... .++..+.... ..+.|+++.+.|||+.|++|++-.++.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccC-cccceeeeEecCCCceEEeccccceee
Confidence 4566778889999999999986 677999999754 2233333221 246799999999999999999999999
Q ss_pred EEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccc
Q 001367 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1091)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1091)
|||+....+............++.++.+||.+..+++..||.|.|||+.+...++.+.+|.+.+.|+.+
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi----------- 559 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI----------- 559 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe-----------
Confidence 999987665544444444456789999999999999999999999999999999999999999999988
Q ss_pred cCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecC
Q 001367 684 ANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 763 (1091)
Q Consensus 684 ~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~ 763 (1091)
++||..|.+|+-|+++|.||+......+... -...|.++.++|.+.+++++-.++.+.|....
T Consensus 560 ----------s~dGtklWTGGlDntvRcWDlregrqlqqhd-------F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 560 ----------SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred ----------cCCCceeecCCCccceeehhhhhhhhhhhhh-------hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 8889999999999999999987544333222 35689999999999999999999988875533
Q ss_pred CcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCC
Q 001367 764 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS 842 (1091)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~ 842 (1091)
... ..... -|..-|.++.|++-|+++++.+ |+-+-.|.+.-|..+...+ ..
T Consensus 623 kp~-----------------------kyqlh----lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~ 674 (705)
T KOG0639|consen 623 KPE-----------------------KYQLH----LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ES 674 (705)
T ss_pred Ccc-----------------------ceeec----ccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-cc
Confidence 211 11111 2889999999999999999887 8899999988887776665 56
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEec
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
..|.++.+|. |.++|++|+.|+...+|.+
T Consensus 675 SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 675 SSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred Ccceeeeecc-CceEEEecCCCcceEEEEE
Confidence 7899999999 8999999999998888875
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=186.44 Aligned_cols=269 Identities=14% Similarity=0.105 Sum_probs=209.2
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
....|+++.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.+ +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 56899999999999999999999999999999874332 235899999999998765 89999999999999998
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
+... .+..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++.. .|+.|++++. +
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D 154 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence 8765 455699999999987543 479999999999999998754444444433 6766665 4567777665 5
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeEEEEeCCCC-------CC
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP 623 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 623 (1091)
..+.+||+++.......... .-+..++++++-|++.-+++++-||.|.+=.++.. +....+..|.. ..
T Consensus 155 r~v~iyDLRn~~~~~q~reS-~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRES-SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhccc-cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 67999999876543321111 11357899999999999999999999988655544 23333443322 23
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (1091)
+|++++|+|--+.+++|+.||.|.+||..+.+.+..+......|..++|+.++..+|+
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAI 291 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEE
Confidence 5899999999899999999999999999999999999888888999999544444433
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-22 Score=189.96 Aligned_cols=282 Identities=15% Similarity=0.213 Sum_probs=213.4
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6789999999999999999 8999999999999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC----cEEEEEEcCCCCEEEEEecCCCCc
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
+.+. ...+|+.+.|+|......+++--.. .-.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecC-CcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9886 7789999999988776555554333 344444444222221111111 1223468899999999975 7
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------eeE--EEEeCCCCCCCC
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------QLL--TTIDAGGGLPEN 625 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v 625 (1091)
|.+.++|..+-+++..++-.. ...|..+.++..|++++.-+.|+.||.|++..- ++. +.+..--....-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 789999999999988877544 467899999999999999999999999987631 111 111110011124
Q ss_pred ceEEEccCCCEEEEEEC-CCeEEEEECCCCCeeccccccc-ccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 626 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
.+++|+.+|.+++.++. ...++||....|..++.+.|.. .....+.|.|. ...+++-
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~---------------------rp~i~si 311 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV---------------------RPIIASI 311 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc---------------------eeeeeec
Confidence 68999999999988775 5779999999999999988877 55666667443 3334444
Q ss_pred cccccccccccc
Q 001367 704 EAENKSEVEKPL 715 (1091)
Q Consensus 704 ~~d~~i~~w~~~ 715 (1091)
..|.+.+|...
T Consensus 312 -~sg~v~iw~~~ 322 (405)
T KOG1273|consen 312 -ASGVVYIWAVV 322 (405)
T ss_pred -cCCceEEEEee
Confidence 45889999854
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=197.71 Aligned_cols=304 Identities=17% Similarity=0.196 Sum_probs=228.4
Q ss_pred eeeecccCCCCcEEEEEcCCCc-eEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~-~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
......-|...|++++|+|... .++|+|+..|+|-+||+.+.+...... ..+..|..+|.++.|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKF 242 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEe
Confidence 3445567788999999999876 799999999999999996444333211 127789999999999
Q ss_pred CC-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce-eEEec
Q 001367 405 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFE 482 (1091)
Q Consensus 405 sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~ 482 (1091)
+| +-..+.+.+.||+|++-|++++.. ..+..+......+..+.|+.+.. .++.++.=|...+||.+++.. ...+.
T Consensus 243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 243 SPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred cCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhh
Confidence 99 567888999999999999998642 22223333445678888988887 677788778999999997655 56677
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce----eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
-|...|++++++|... .++++++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. +..|+
T Consensus 320 lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IR 394 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIR 394 (498)
T ss_pred hhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceE
Confidence 7999999999988754 79999999999999999865433 345568889999999998888887765 67799
Q ss_pred EEecC----CceeeEEEeccccccc--ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 559 EWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 559 iwd~~----~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
+||.. .-.+...+.....+.. ......|.|+..++++|-.-..|-|+|-..++.+..+..+....-..-..|+|
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc
Confidence 99983 2233333332221112 23446799999999999999999999999999888775554322223457999
Q ss_pred CCC-EEEEEECCCeEEEEECC
Q 001367 633 NGT-LLAVIANENRIKILETP 652 (1091)
Q Consensus 633 ~~~-~l~~~~~dg~i~iwd~~ 652 (1091)
-+. +++-++..|.|+||..+
T Consensus 475 ~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 475 MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccceeccCCccceEEEEecC
Confidence 777 44445557899998654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=199.94 Aligned_cols=254 Identities=16% Similarity=0.169 Sum_probs=204.5
Q ss_pred eEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeC
Q 001367 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1091)
Q Consensus 348 ~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1091)
+++++-.....+.+|.+........ ..+ -.++|.|++-+|+|.+|+.|+..|.+++|.+.+
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q----------------~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss 112 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQ----------------YIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELSS 112 (476)
T ss_pred heeeecccCccccccccCchhhhhh----------------hcc---cccceeeeecCCCceEEEeecccCcEEEEEecc
Confidence 4444444455677887765544431 111 236899999999999999999999999999999
Q ss_pred CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC---------CCceeEEecCCCcceEEEeecccCC
Q 001367 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---------TGSRTYSFEGHGAPVYSLCPHAKEN 498 (1091)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~ 498 (1091)
|..+. .+.+|-.+|+++.|+.||. +++|||.||.|.+|++. +-++++.|..|.-+|+.+...+.+-
T Consensus 113 G~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~ 187 (476)
T KOG0646|consen 113 GILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT 187 (476)
T ss_pred ccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc
Confidence 98777 5679999999999999999 89999999999999763 3467788999999999999877766
Q ss_pred ceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC--------------
Q 001367 499 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-------------- 564 (1091)
Q Consensus 499 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-------------- 564 (1091)
..++++++.|.++++||+..+..+..+..+ ..+.+++.+|.++.+++|+. +|.|.+.++..
T Consensus 188 ~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~~ 262 (476)
T KOG0646|consen 188 NARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGRH 262 (476)
T ss_pred cceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCC----cceEEeeehhcCCcccccccccccc
Confidence 679999999999999999998777666543 47899999999999999876 55677765532
Q ss_pred --ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 565 --GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 565 --~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
+..+..+.||. ....|+|++.+-||..|++|+.||+|+|||+.+.++++++... .++|+.+.+.|-
T Consensus 263 ~~~t~~~~~~Gh~-~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 263 EENTQINVLVGHE-NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred cccceeeeecccc-CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 23455667776 1138999999999999999999999999999999999888732 236788887663
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=204.86 Aligned_cols=325 Identities=12% Similarity=0.155 Sum_probs=246.8
Q ss_pred CCcccCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecC
Q 001367 315 GETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394 (1091)
Q Consensus 315 ~~~~~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1091)
.+.....+|..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++....
T Consensus 381 sp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~-------------------- 439 (733)
T KOG0650|consen 381 SPKDLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ-------------------- 439 (733)
T ss_pred ChhhcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------
Confidence 344556778899999999999999999999998 67999999999999999999997532
Q ss_pred CCccEEEEEECCCCC--EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEe----eCCCcEE
Q 001367 395 PGVSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC----GDDKTIK 468 (1091)
Q Consensus 395 h~~~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~----~~d~~i~ 468 (1091)
-.+.|.|++|+|.+. .||++-... +.|-+..-|..+.. +. ... .|+++ ..++.+.
T Consensus 440 ~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~-----~~-----------t~e--ll~~~~~~~~p~~~~~ 500 (733)
T KOG0650|consen 440 FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV-----GP-----------TKE--LLASAPNESEPDAAVV 500 (733)
T ss_pred ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh-----cc-----------hhh--hhhcCCCccCCcccce
Confidence 235899999999664 556554444 66666555532211 00 001 12222 3356778
Q ss_pred EEeCCCCc----eeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCCCCceeeecCCCCcEEEEEEcCCC
Q 001367 469 VWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1091)
Q Consensus 469 iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 541 (1091)
.|.-.... -++..-.|...|..+.|+. .|.||++...+ ..|.|.++.....+..+....+.+.++.|+|..
T Consensus 501 ~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~ 578 (733)
T KOG0650|consen 501 TWSRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK 578 (733)
T ss_pred eechhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC
Confidence 88644211 1334456899999999965 56799887654 458899998877777777778899999999999
Q ss_pred CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeEEEEeCCC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGG 620 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~ 620 (1091)
.+|++++ ...|++||+..+++++.+.... ..|..++.+|.|..|+.|+.|+.+..+|+.-. ++.+++..|.
T Consensus 579 p~lfVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~ 650 (733)
T KOG0650|consen 579 PYLFVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE 650 (733)
T ss_pred ceEEEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh
Confidence 9998887 4569999999988888777655 78999999999999999999999999999754 5566666665
Q ss_pred CCCCCceEEEccCCCEEEEEECCCeEEEEECC------CC---Ceeccccccccc----ceeeeeccccccccccccCCc
Q 001367 621 GLPENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGS 687 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~g~ 687 (1091)
. .+..|+|++.-.++++|+.||++.|+-.. .+ -++..+++|... |..+.|
T Consensus 651 ~--avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w--------------- 713 (733)
T KOG0650|consen 651 K--AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW--------------- 713 (733)
T ss_pred h--hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecc---------------
Confidence 4 68999999999999999999999998532 11 234556666544 444445
Q ss_pred ccCCCCCCCCCcccccccccccccc
Q 001367 688 VSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 688 ~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
.|...++++++.||+|++|
T Consensus 714 ------HP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 714 ------HPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------cCCCceEEecCCCceEEee
Confidence 6778889999999999998
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-20 Score=195.42 Aligned_cols=277 Identities=13% Similarity=0.150 Sum_probs=204.7
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
+..| .|..++|-|||..|++.++ ..+.|||+..|..+.+ +++|...|.|++||.||+
T Consensus 10 ~~~h--ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGk 66 (1081)
T KOG1538|consen 10 KAEH--CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGK 66 (1081)
T ss_pred cccc--chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCc
Confidence 3445 8999999999987765544 6899999999998876 889999999999999999
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
++|+|+.|..|.+|+.+-...++ ..|.+.|.|+.|+|-.. .|++++-. ..-+|..+..... .|...+.
T Consensus 67 rFASG~aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R 134 (1081)
T KOG1538|consen 67 RFASGSADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSR 134 (1081)
T ss_pred eeccCCCceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhhee
Confidence 99999999999999977544332 26999999999999988 68888754 4678986544332 2444444
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeec---CCCCcEEEEEEcCCCC-----EEEEEecCCCCceEEEEEe
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~-----~l~~~~~~~~~~~~i~iwd 561 (1091)
.++.++++||++++.|-.+|+|.+-+-. +++...+. +.+.+|.+++|+|... .+++.-. ..++..+.
T Consensus 135 ~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~ 209 (1081)
T KOG1538|consen 135 IICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQ 209 (1081)
T ss_pred EEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEE
Confidence 4444448899999999999999988543 33333333 3566899999999643 2332221 22233333
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
+ +|+.+..-.... -...|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++.... ..|+.++..|+++.++.|+
T Consensus 210 L-sG~~Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 210 L-SGKQIGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred e-cceeecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEE
Confidence 3 233332222222 45678899999999999999999999974 455566654433 3799999999999999999
Q ss_pred CCCeEEEEECCC
Q 001367 642 NENRIKILETPE 653 (1091)
Q Consensus 642 ~dg~i~iwd~~~ 653 (1091)
.||+|..|++..
T Consensus 283 qDGTiACyNl~f 294 (1081)
T KOG1538|consen 283 QDGTIACYNLIF 294 (1081)
T ss_pred ccCeeehhhhHH
Confidence 999999998763
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-23 Score=218.08 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=212.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 34588999999997789999999999999999987654443 5789999999999999988 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
++.++.++++.+|...+.++.|+| -+.+.++|+.|..+++||.+...+...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 999999999999999999999966 4578999999999999999999999999999999999999999999999875
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
+..+.+||...|+....|.+|. ..+.++.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn 247 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN 247 (825)
T ss_pred --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence 6789999999999999999988 89999999999888888999999999999998888776654 3478999999
Q ss_pred cCCCEEEEEECC
Q 001367 632 KNGTLLAVIANE 643 (1091)
Q Consensus 632 ~~~~~l~~~~~d 643 (1091)
|+++.+++|...
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 999999888664
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=195.08 Aligned_cols=252 Identities=19% Similarity=0.326 Sum_probs=200.9
Q ss_pred cCCCccEEEEEECCC-CCEEEEEECCCEEEEEEeeCCccc-------ceeEEEeccccCeeEEEEcCCCCceEEEEeeCC
Q 001367 393 RDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD 464 (1091)
Q Consensus 393 ~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d 464 (1091)
--|.+.|..+..-|. ...+|+.+..+.|.|||...-... +....+.+|.+.-..++|++.... .+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 348999999999995 456667788889999999753322 233368899998888999998765 79999999
Q ss_pred CcEEEEeCCCCc-------eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecC--CCCceeeecCCCCcEEEE
Q 001367 465 KTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 465 ~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~ 535 (1091)
++|++||+.... ....+.+|...|..++|++... .++++++.|+.+.|||.+ +.+.......|..++.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999987532 2466789999999999998754 689999999999999999 556666788899999999
Q ss_pred EEcCCCCE-EEEEecCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCee
Q 001367 536 AYSANGRR-LFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQL 612 (1091)
Q Consensus 536 ~~s~d~~~-l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~~~ 612 (1091)
+|+|-+.+ ||+++. +++|.+||+++. +.+..+.+|. ..|..|.|+|... .|++++.|+.+.+||+..-..
T Consensus 279 ~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 279 AFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred EeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 99996655 555554 777999999875 4567777777 9999999999865 556688999999999875221
Q ss_pred ------------EEEEeCCCCCCCCceEEEccCCC-EEEEEECCCeEEEEECCC
Q 001367 613 ------------LTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 653 (1091)
Q Consensus 613 ------------~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~ 653 (1091)
...+...++...|..+.|+|+.. .+++++.|+.+.||....
T Consensus 352 eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 352 EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 12244455666899999999765 577888999999999764
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-21 Score=199.34 Aligned_cols=321 Identities=15% Similarity=0.232 Sum_probs=239.7
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC--EEEEEECCCe
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANENR 645 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~ 645 (1091)
-..+.+|. +.|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.+++|+|.+. .||++..+.
T Consensus 393 ~lvyrGHt---g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 393 ALVYRGHT---GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eeeEeccC---CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecCc-
Confidence 34567777 999999999999999999999999999999999999998765 489999999664 455554443
Q ss_pred EEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc----ccccccccccccccCCcc
Q 001367 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV----EAENKSEVEKPLFARPSE 721 (1091)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~----~~d~~i~~w~~~~~~~~~ 721 (1091)
+.|.+..-|..+..- +....++++ ..++.+..|.-......+
T Consensus 466 ~~ivnp~~G~~~e~~----------------------------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~ 511 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVG----------------------------------PTKELLASAPNESEPDAAVVTWSRASLDELE 511 (733)
T ss_pred eEEeCccccchhhhc----------------------------------chhhhhhcCCCccCCcccceeechhhhhhhc
Confidence 666554433211110 001111111 223456667644322222
Q ss_pred ---cceeecCCccccccEEEEEEecCCCeEEEeecC---ceEEEeecCCcccccccceeeccCCccccCCCCCceeeecC
Q 001367 722 ---CQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 795 (1091)
Q Consensus 722 ---~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1091)
+..+. |...|..+.|+..|.+|++...+ ..+.|+++..... ... +
T Consensus 512 ~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------------------Q~P--F 562 (733)
T KOG0650|consen 512 KGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------------------QSP--F 562 (733)
T ss_pred cceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------------------cCc--h
Confidence 22332 67899999999999999988764 4566666543321 111 1
Q ss_pred CCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 796 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 796 ~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
....+.|.++.|+|...++++++...|+|||+..+..++.+......|..++++| .|.-|+.|+.|+.+..+|+.-.
T Consensus 563 --~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 563 --RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred --hhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccC
Confidence 1256778999999999999999999999999999998888888888999999999 7888888999999999999865
Q ss_pred -ceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC--CCc--eeeeeeeeccCCCcCC-CCCceEEEEcCCCCE
Q 001367 876 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD--GWG--IQTCRSLQTPDGVMTL-APSETHIQFHKDQTR 949 (1091)
Q Consensus 876 -~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~--~~~--~~~~~~~~~~~~~~~~-~~~i~~l~fs~dg~~ 949 (1091)
++.+++.-|...|++++|++.-.+++||+.||++.|+--. +.- ......++.+.||... ...|..+.|+|..-+
T Consensus 640 skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 640 SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW 719 (733)
T ss_pred cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence 5678889999999999999999999999999999988421 110 1113456777777651 134888899999999
Q ss_pred EEE-EecCeEEEE
Q 001367 950 FLL-VHETHLAIY 961 (1091)
Q Consensus 950 la~-~~d~~i~vw 961 (1091)
|.+ |.||+|++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 998 789999998
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=202.51 Aligned_cols=236 Identities=17% Similarity=0.232 Sum_probs=193.5
Q ss_pred CCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCC-CEEEEEe-C
Q 001367 744 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AYLFSAS-G 821 (1091)
Q Consensus 744 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~la~~~-d 821 (1091)
+.++|++++.+|.|.+||+.....+ .....+ ..|...+.++.|++-. .+|++|+ |
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rn---------------------k~l~~f--~EH~Rs~~~ldfh~tep~iliSGSQD 155 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRN---------------------KLLTVF--NEHERSANKLDFHSTEPNILISGSQD 155 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccc---------------------hhhhHh--hhhccceeeeeeccCCccEEEecCCC
Confidence 4567889999999999998752110 000111 1489999999999865 5666777 8
Q ss_pred CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc-ceeeeeccccCCeEEEEECCCCCEE
Q 001367 822 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNIL 900 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l 900 (1091)
|.|++||+...+-..++.+....|+.+.|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.++.|+|++.+|
T Consensus 156 g~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 156 GTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWL 235 (839)
T ss_pred ceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCcee
Confidence 999999999999999999888999999999988899999999999999999864 5678899999999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE----EecCeEEEEEcCCcceeeeeecCC
Q 001367 901 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCLKQWFPIS 976 (1091)
Q Consensus 901 as~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~----~~d~~i~vwd~~~~~~~~~~~~~h 976 (1091)
||||.|++|+|||..+.+.....++.+. .++..+.|-|+..+.++ +.|..|+|||++..-.....+..|
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH 308 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH 308 (839)
T ss_pred eecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc
Confidence 9999999999999998775554555544 26899999999877554 367889999999877777777889
Q ss_pred ccCEEEEEEee-CCCEEEEEEcCCcEEEEeCCCC
Q 001367 977 SVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 977 ~~~v~~v~fs~-dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
...++.++|-. |-..+.+++.||+|..-.+.++
T Consensus 309 ~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 309 TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred CccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 99999999976 5567889999998876555544
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=203.58 Aligned_cols=285 Identities=16% Similarity=0.259 Sum_probs=217.5
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCccccee-EEEec---cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~-~~~~~---h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
....+|+.+++-..++.++.. .++||.+......... ...+. -...+..+.|..-..+ +|+|++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence 456677888998888888655 4788877653321111 01111 1124567788754444 8999999999999999
Q ss_pred CC---CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCC-CCEEEEEe
Q 001367 473 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-GRRLFSCG 548 (1091)
Q Consensus 473 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d-~~~l~~~~ 548 (1091)
.. .+.+..|..|...++++.|+.... .+|++|+.||.|++||++.......+......|..+.|+|. +..++++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 87 566778999999999999987644 69999999999999999999999988888889999999994 55666665
Q ss_pred cCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 549 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
. .|.+++||++.. ++...+..|. ++|.|+.|+|++.+|++||.|+.|+|||+.+.+.......+. ..++.+
T Consensus 197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r 268 (839)
T KOG0269|consen 197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR 268 (839)
T ss_pred C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence 4 678999999864 4566677777 999999999999999999999999999998755433332222 246899
Q ss_pred EEEccCCC-EEEEEE--CCCeEEEEECCCC-CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 628 ICFNKNGT-LLAVIA--NENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 628 v~~s~~~~-~l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
|.|-|+.. +|++++ .|..|+|||+... -+...+..|...++.++|. +.|...+.++
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~--------------------~~d~~~l~s~ 328 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD--------------------SGDRINLWSC 328 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc--------------------CCCceeeEee
Confidence 99999665 455554 3789999999876 4456677888888888885 5566677788
Q ss_pred ccccccccc
Q 001367 704 EAENKSEVE 712 (1091)
Q Consensus 704 ~~d~~i~~w 712 (1091)
+.|+++..-
T Consensus 329 sKD~tv~qh 337 (839)
T KOG0269|consen 329 SKDGTVLQH 337 (839)
T ss_pred cCccHHHHh
Confidence 888876543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=196.50 Aligned_cols=313 Identities=13% Similarity=0.125 Sum_probs=217.4
Q ss_pred EEEc--CCCceEEEEEcCCCcEEEEEcCCCCce-eeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC
Q 001367 340 MDFH--PVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1091)
Q Consensus 340 v~fs--pdg~~llasg~~dg~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 416 (1091)
+.|+ |+.+++||.+..||.|.++|....... ....| .-...|...|..++|-|....|++++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l--------------k~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQL--------------KKPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhh--------------cccccccceeEeeccCCCceeEEEccC
Confidence 4554 345579999999999999998654332 11111 114569999999999997788999999
Q ss_pred CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce--e-----EEecCCCcceE
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR--T-----YSFEGHGAPVY 489 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~-----~~~~~~~~~v~ 489 (1091)
|.++++||+++++..... .+.||.+.|.+++|.|++.. .|++|+.||.|.|||+.-... + .....|...-
T Consensus 121 DsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p- 197 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP- 197 (720)
T ss_pred Cceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-
Confidence 999999999998776543 46799999999999999886 899999999999999864331 1 0111122110
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEE---EEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR---MAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~---~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
.+.. ...+.......+...|.+ +.+..|...|++++. .|+.|++||++...
T Consensus 198 ------tpsk-----------------p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 198 ------TPSK-----------------PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNY 251 (720)
T ss_pred ------CCCc-----------------hhhccccccccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccc
Confidence 0000 001111122333344444 556688999999875 47889999998754
Q ss_pred eeEE--------EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--EEEEeCCCCCCCCceEEEccCCCE
Q 001367 567 IKRT--------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 567 ~~~~--------~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1091)
.... +..+......+.++.....|.++++.+.|+.|++||+.+-.. +..+.++-....-..-..+||+.+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 4322 222211124567777777889999999999999999986432 233322211111223457899999
Q ss_pred EEEEECCCeEEEEECCCC-CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 637 LAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+++|+.|...++|.+.+. .....+.+|...|++++|.| ++... +++++.|..+++|++.
T Consensus 332 l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p-------------------S~~t~-v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP-------------------SATTP-VATCSDDFRVKIWRLS 391 (720)
T ss_pred EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc-------------------ccCCC-ceeeccCcceEEEecc
Confidence 999999999999999876 44556789999999999975 44444 5666999999999974
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-21 Score=208.03 Aligned_cols=239 Identities=11% Similarity=0.205 Sum_probs=213.3
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+....|+..|.|+..-..++ .+++|+.|..+-+|.+.....+.. +.+|+.+|.++.|+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS 81 (825)
T ss_pred hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence 44567888999999866666 789999999999999876655543 7899999999999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
..+|++|+.+|+|++||++.++.++ ++.+|...+..+.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence 9999999999999999999987776 7889999999999999999 7899999999999999989999999999999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
|..+.| +++|.++++++.|..+++||...++....+..|...+.++.|+|..-.++.|+. +..+++||+++-+.
T Consensus 157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV 230 (825)
T ss_pred eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence 999999 568899999999999999999999999999999999999999999888888876 77799999998888
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEeCCC
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg 600 (1091)
+....... ..|.+.+|+|++..+++|....
T Consensus 231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence 87776665 7899999999999888876543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=174.97 Aligned_cols=295 Identities=15% Similarity=0.252 Sum_probs=213.4
Q ss_pred eecccCCCCcEEEEEcC----CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 328 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fsp----dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
+....|+.+|..++|.+ +...++|+.+. ..+.|++....--+. .++.-.-..|......++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCS 96 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcccee--------------eeeeccCCCCCcceEEEE
Confidence 44568888999999984 33335566554 678899876543221 111211335788888999
Q ss_pred ECCC----CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 404 WSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 404 ~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
|+-| .-+||+|+.-|.|+|.|+.+++..+ .+.+|...|+.+.|.|+..+ ++++++.|.+|++|++++..++.
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~ 172 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA 172 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence 9875 3489999999999999999987766 57899999999999999877 89999999999999999999998
Q ss_pred Ee---cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee----------------------------ecCC
Q 001367 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----------------------------YDAP 528 (1091)
Q Consensus 480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------~~~~ 528 (1091)
.| .+|...|.++.|+. +|.++++++.|..+++|++...+-... ...|
T Consensus 173 VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 87 57999999999954 667999999999999999973221110 0112
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec-CCcee-------------eEEEecccccccceEEE--EEcCCCCE
Q 001367 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVV--HFDTAKDQ 592 (1091)
Q Consensus 529 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~~~v~~v--~~~~~~~~ 592 (1091)
...|.|+.|- |+++++-+. ++.|..|.. +-++. +..+.-. ...|.-+ +|.|-++.
T Consensus 251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKM 321 (385)
T ss_pred cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHH
Confidence 2223333332 355665443 557999976 21111 1222222 2445544 44566889
Q ss_pred EEEEeCCCeEEEEECCCCee--EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 593 ILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
|+.|...|.|++||++...+ ..++..+.....|...+|+.|+..|+...+|++|.-||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999987665 2334444444578999999999999999999999999853
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=190.87 Aligned_cols=289 Identities=16% Similarity=0.133 Sum_probs=198.9
Q ss_pred CeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeE
Q 001367 746 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI 824 (1091)
Q Consensus 746 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i 824 (1091)
..|+.+.++|.|.++|...... .++... +.. ...|...|..+.+.|....|++++ |.++
T Consensus 65 HiLavadE~G~i~l~dt~~~~f---------------r~ee~~-lk~----~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVF---------------RLEERQ-LKK----PLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ceEEEecCCCceeeecchhhhc---------------chhhhh-hcc----cccccceeEeeccCCCceeEEEccCCcee
Confidence 3466677789999998654322 111110 111 124999999999999666777776 7899
Q ss_pred EEEEccCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc--------------------------
Q 001367 825 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-------------------------- 876 (1091)
Q Consensus 825 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-------------------------- 876 (1091)
++||+++.++... +.+|.+.+.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998877 889999999999999888999999999999999985321
Q ss_pred -eeeeeccccCCeEE---EEECCCCCEEEEEeC-CCcEEEEEcCCCceeee-eee--eccCCCcCCCCCceEEEEcCCCC
Q 001367 877 -VISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTC-RSL--QTPDGVMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 877 -~~~~l~~h~~~V~~---l~~spdg~~las~s~-Dg~i~vwd~~~~~~~~~-~~~--~~~~~~~~~~~~i~~l~fs~dg~ 948 (1091)
.+.....|...|.+ +.+..|...|||+|+ |+.|+|||+........ ... .....+..-.-.+.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 01222345555666 666678899999988 99999999987543211 111 11111111123567777778888
Q ss_pred EEEE-EecCeEEEEEcCCcceee-eeecCCcc--CEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCC
Q 001367 949 RFLL-VHETHLAIYEAEELTCLK-QWFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1024 (1091)
Q Consensus 949 ~la~-~~d~~i~vwd~~~~~~~~-~~~~~h~~--~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 1024 (1091)
+|.+ +.|+.|+.|++.+...-. ..+.++.. .-..-..|||+.+|++|+.|..+++|.+.+-+.--. ..+.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~----~l~G-- 358 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA----LLLG-- 358 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh----hhhC--
Confidence 8877 899999999988643221 11222211 111234689999999999999999999987654311 1222
Q ss_pred CcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1025 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1025 ~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
|.-+|. +++|.|.+-.-++++++|..+.+|++....
T Consensus 359 -ht~eVt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 359 -HTREVT--TVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred -cceEEE--EEeeccccCCCceeeccCcceEEEeccCch
Confidence 233444 556666545668888999999999996644
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=178.47 Aligned_cols=308 Identities=15% Similarity=0.158 Sum_probs=217.2
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
.++.|+ +|..+.|.+++...+|||+.|..|+||.+..+..-..- ....-...+..|...|+++.|+|+|
T Consensus 9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc
Confidence 344565 99999999988656899999999999999765433210 0001123488899999999999999
Q ss_pred CEEEEEECCCEEEEEEee--------C-----CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 409 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
..||+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|..+++||+..|
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence 999999999999999877 3 222333446789999999999999999 8999999999999999999
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec----------C---------CC----CcE
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD----------A---------PG----LGC 532 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~---------~~----~~i 532 (1091)
..+..+..|..-|..++|.| -++++++-+.|...+.+.+.......... . |. .-.
T Consensus 156 ~l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eeEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 99999999999999999965 44788888888866666554332222110 0 00 123
Q ss_pred EEEEEcCCCCEEEEEecCCC-----CceEEEEEecCC-ceeeEEEecccccccceEEEEEcC------------------
Q 001367 533 TRMAYSANGRRLFSCGTSKE-----GESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDT------------------ 588 (1091)
Q Consensus 533 ~~~~~s~d~~~l~~~~~~~~-----~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~------------------ 588 (1091)
..++|+|||..+++....-+ ..+..++++-.. .++...+.+.. .....+.|+|
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence 56789999999987543111 023344554321 12222233222 3334444433
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCe
Q 001367 589 AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
.+-.++.++ ...|++||.++-.++.....- +...++.++|++||..+++.+.||-..+..++..+.
T Consensus 311 yrlvfaiAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 311 YRLVFAIAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cceEEEEee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 222333444 457999999998887766432 234789999999999999999999988877765533
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-19 Score=169.16 Aligned_cols=268 Identities=13% Similarity=0.197 Sum_probs=193.9
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC--CC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 408 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 408 (1091)
.+|.+-|.++.|.+-|+++ |+|+.|++|+|||.....-.-. ...-.+.|.+.|..+.|.+ -|
T Consensus 10 s~h~DlihdVs~D~~GRRm-AtCSsDq~vkI~d~~~~s~~W~---------------~Ts~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRM-ATCSSDQTVKIWDSTSDSGTWS---------------CTSSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCcee-eeccCCCcEEEEeccCCCCceE---------------EeeeEEecCCcEEEEEecCcccc
Confidence 5899999999999999965 9999999999999754432211 0111567999999999986 59
Q ss_pred CEEEEEECCCEEEEEEeeCC------cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee----
Q 001367 409 SLLGVAYSKHIVQLYAYHGG------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---- 478 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~------~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---- 478 (1091)
+.+|+++.|+++.||.-... ..-....++......|+++.|.|.-..+.+++++.||.+|||+....-.+
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 99999999999999986321 12223345667778999999999877779999999999999986543322
Q ss_pred --EEec-------CCCcceEEEeecccCCc-eEEEEEecC-----CeEEEEecCCCCce----eeecCCCCcEEEEEEcC
Q 001367 479 --YSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSA 539 (1091)
Q Consensus 479 --~~~~-------~~~~~v~~~~~~~~~~~-~~l~s~~~d-----g~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~ 539 (1091)
+.+. .+..+..|+.|+++.-. .+|+.|+.+ +.++||........ .++..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 2332 35566778888754332 456666655 47899987765532 25678889999999999
Q ss_pred CC----CEEEEEecCCCCceEEEEEecCCce-----------------eeEEEecccccccceEEEEEcCCCCEEEEEeC
Q 001367 540 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1091)
Q Consensus 540 d~----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~ 598 (1091)
+- ..|++++. +| |+||.+.... .+..+..+..|++.|..+.|+-.|..|.+.|.
T Consensus 234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 53 34566654 44 9999887311 12333333344599999999999999999999
Q ss_pred CCeEEEEECCC---CeeEEEEeCC
Q 001367 599 DHVIKIWDMNK---VQLLTTIDAG 619 (1091)
Q Consensus 599 dg~i~iwd~~~---~~~~~~~~~~ 619 (1091)
||.|++|...- .++...+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 99999997542 3444444443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-19 Score=169.75 Aligned_cols=257 Identities=12% Similarity=0.177 Sum_probs=189.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCC-cccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~ 468 (1091)
-.+|..-|.++.|.+-|+++|+|+.|++|+|||.+.+ .........+.|.+.|..+.|.+. |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 4579999999999999999999999999999996443 234445567899999999999764 56 899999999999
Q ss_pred EEeCCC------C---ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee------eec-------
Q 001367 469 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD------- 526 (1091)
Q Consensus 469 iwd~~~------~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~------- 526 (1091)
||.-.. + ....++......|+.++|.|..-|-.+++++.||.+|||+.-...... ++.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 123456667789999999999999999999999999999765432221 111
Q ss_pred CCCCcEEEEEEcCC---CCEEEEEecCC-CCceEEEEEecCCc--e--eeEEEecccccccceEEEEEcCCC----CEEE
Q 001367 527 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEG--A--IKRTYQGLQLQHNSVSVVHFDTAK----DQIL 594 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d---~~~l~~~~~~~-~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~v~~v~~~~~~----~~l~ 594 (1091)
.+..+..|+.|+|. ..+|++++.+. ...+.++||....+ + .+..+.++. .+|+.++|.|+- ..++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23446788999874 35677766431 12234666654432 2 334455555 999999999973 4678
Q ss_pred EEeCCCeEEEEECCCCe-----------------eEEEEe-CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 595 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 595 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
+++.|| |+||++.... .+..+. ..++...|..+.|+-.|..|++.+.||.|++|...-.
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 899999 9999987311 112221 3344558999999999999999999999999986643
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-20 Score=211.87 Aligned_cols=296 Identities=16% Similarity=0.253 Sum_probs=226.4
Q ss_pred cEEEEEcCCCceEEEEEcC----------CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 337 PMSMDFHPVQHTLLLVGTN----------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 337 V~~v~fspdg~~llasg~~----------dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
--.++|||++..++|+|.. +.++.||.+.-...... ++...-..-......++|.+
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~d--------------lk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSD--------------LKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccc--------------ccccccccccccceeeeecc
Confidence 3457999999867787753 23344554422111100 00000111346788999999
Q ss_pred CCCE----EEEEECCCEEEEEEeeC---CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 407 DGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 407 dg~~----las~~~d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.+.. +|++|+.||.|.|||+..-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 7766 88889999999999876 4444445567789999999999998776 89999999999999998765544
Q ss_pred Eec--CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC--cEEEEEEcCCCCE-EEEEecCCCCc
Q 001367 480 SFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRR-LFSCGTSKEGE 554 (1091)
Q Consensus 480 ~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~d~~~-l~~~~~~~~~~ 554 (1091)
++. .....|.+++|+. ...+.|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++.. +++++ +.+..
T Consensus 154 ~~~~~~~~~eI~~lsWNr-kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As-~dd~~ 231 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNR-KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS-GDDSA 231 (1049)
T ss_pred CCCCCCCcccceEeccch-hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec-CCCCC
Confidence 442 2456799999863 3457899999999999999999988877766554 4778999998754 44444 44668
Q ss_pred eEEEEEecCC-ceeeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 555 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 555 ~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
..|.+||++. ...++.+++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .+..+.|+|
T Consensus 232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~p 306 (1049)
T KOG0307|consen 232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCP 306 (1049)
T ss_pred ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecC
Confidence 8999999875 45677788888 899999999987 7788899999999999999999999987543 789999999
Q ss_pred CCC-EEEEEECCCeEEEEECCCC
Q 001367 633 NGT-LLAVIANENRIKILETPES 654 (1091)
Q Consensus 633 ~~~-~l~~~~~dg~i~iwd~~~~ 654 (1091)
... .+++++-||.|.||.+.+.
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCcchhhhheeccceeeeeeecC
Confidence 655 8899999999999998865
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=174.21 Aligned_cols=300 Identities=15% Similarity=0.201 Sum_probs=205.8
Q ss_pred cccccEEEEEEec----CCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeE
Q 001367 731 VKANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 806 (1091)
Q Consensus 731 ~~~~~i~~~~~s~----dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 806 (1091)
.|..+|..++|.+ +...+++......+.+|+.+... +.++.+.... ..+......
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D-~d~~Esfyt 94 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYAD-EDHDESFYT 94 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccC-CCCCcceEE
Confidence 3667788888873 33345666666688888765421 1112221111 135566666
Q ss_pred EEecCC----CCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee
Q 001367 807 FALSKN----DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881 (1091)
Q Consensus 807 l~~s~d----g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l 881 (1091)
++++-| .-++|.++ -|.|+|.|+.++++...+.+|...|..+.|.|+..+++++++.|.+|++|++++..++..+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 666653 23566665 5999999999999999999999999999999988899999999999999999999998876
Q ss_pred ---ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee-------------eeeeccCCCcC-------CCCCc
Q 001367 882 ---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC-------------RSLQTPDGVMT-------LAPSE 938 (1091)
Q Consensus 882 ---~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~-------------~~~~~~~~~~~-------~~~~i 938 (1091)
.||.+.|.++.|+++|.+++|+|.|.+|++|++...+.... +.+.....|.+ +...|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 56999999999999999999999999999999985332110 01111111111 00122
Q ss_pred eEEEEcCCCCEEEE-EecCeEEEEEc-CCcceeeee------------ecCCccCEEEEEEe--eCCCEEEEEEcCCcEE
Q 001367 939 THIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLS 1002 (1091)
Q Consensus 939 ~~l~fs~dg~~la~-~~d~~i~vwd~-~~~~~~~~~------------~~~h~~~v~~v~fs--~dg~~l~t~~~dg~v~ 1002 (1091)
.|+.|- |.++++ +.++.|..|.. +-++.+... +.-....|+-+.|+ |-+++||.|...|.|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~ 332 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVY 332 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEE
Confidence 222221 567777 78889999987 222221111 11124556666665 4578999999999999
Q ss_pred EEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 1003 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1003 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
+||+...+.... ..+....++..|+ -.+|+. |+.+|+..++|++|.-||..
T Consensus 333 vwdL~~~ep~~~----ttl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 333 VWDLDNNEPPKC----TTLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEECCCCCCccC----ceEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999998776411 1112222244455 456776 58999999999999999863
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=183.02 Aligned_cols=252 Identities=15% Similarity=0.177 Sum_probs=192.4
Q ss_pred EEEEEECC-------CCCEEEEEECCCEEEEEEeeCCcccceeEE------------------EeccccCeeEEEEcCCC
Q 001367 399 VNRVVWSP-------DGSLLGVAYSKHIVQLYAYHGGSDARQQLE------------------IDAHVGNVNDLAFSAPC 453 (1091)
Q Consensus 399 V~~l~~sp-------dg~~las~~~d~~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~~~~s~d~ 453 (1091)
..|++|.. -|+|+|.|+.|..|.|||+.--..+.+... -.+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 34666643 368999999999999999864322222111 23799999999999887
Q ss_pred CceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEE
Q 001367 454 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCT 533 (1091)
Q Consensus 454 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 533 (1091)
+. +|++||.|.+|++||+.+|++..++..|...|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|-
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 76 8999999999999999999999999999999999999976 457999999999999999985333322222345788
Q ss_pred EEEEcCCCCEEEEEecCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 001367 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 534 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 611 (1091)
.++|.|.....+.++. .+|+++-+|++.. +++.+++.|. ..|.++++++... .+++++.|+.|.+|++..-.
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 8999998877766664 3788999999875 8889999888 8999999988754 56669999999999987544
Q ss_pred eEEEEeCCCCCCCCceEEEccCC-CEEEEEECCCeEEEEECCCCCeec
Q 001367 612 LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1091)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1091)
...............|.++.|+- -.++.|+..+.+++||+.+...+.
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 42222211112234566777754 467788888889999998775544
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-19 Score=181.09 Aligned_cols=294 Identities=13% Similarity=0.173 Sum_probs=219.3
Q ss_pred EEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCE-EEEEECCCEEEEEEeeCC
Q 001367 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL-LGVAYSKHIVQLYAYHGG 428 (1091)
Q Consensus 350 lasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~-las~~~d~~i~iwd~~~~ 428 (1091)
+|+++ ..++|||+..-+...... -....-.+.++.|+....+ +|+.+.|..+++|.-...
T Consensus 7 ~aS~g--d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~ 67 (673)
T KOG4378|consen 7 VASTG--DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK 67 (673)
T ss_pred eeccC--CceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCC
Confidence 44444 679999997655443200 0011234889999987642 233456778899975543
Q ss_pred cc-cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec
Q 001367 429 SD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507 (1091)
Q Consensus 429 ~~-~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 507 (1091)
.. +.......+. .-.|++...... ++++||..+.|+|||+....+.+.+++|...|+++.+. ....+|++++.
T Consensus 68 ~~~Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN--~~DeyiAsvs~ 141 (673)
T KOG4378|consen 68 TPEVPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN--NTDEYIASVSD 141 (673)
T ss_pred CCccceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec--CCcceeEEecc
Confidence 11 1111122222 223333333334 89999999999999999888888899999999999985 45579999999
Q ss_pred CCeEEEEecCCCCceeeecCC-CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEE
Q 001367 508 DGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF 586 (1091)
Q Consensus 508 dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~ 586 (1091)
.|.|.+..+.++.....+... +..+.-+.|+|..+++++...+ +|.|.+||+....++..+.. .|..+...++|
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicf 216 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICF 216 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCccee
Confidence 999999999888877777766 4456689999998887766542 78899999998877665543 23588899999
Q ss_pred cCCCC-EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC-Ceeccccccc
Q 001367 587 DTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLS 664 (1091)
Q Consensus 587 ~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 664 (1091)
+|... .+++.+.|..|.+||....+....+.... +...++|+++|.+|+.|...|.|..||+... .++..+..|.
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred cCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 99765 45668999999999999877776665433 4689999999999999999999999999865 6778888999
Q ss_pred ccceeeeecccc
Q 001367 665 DNLRKLSVNPIS 676 (1091)
Q Consensus 665 ~~v~~~~~~~~~ 676 (1091)
..|++++|-+.+
T Consensus 294 ~sVt~vafq~s~ 305 (673)
T KOG4378|consen 294 ASVTRVAFQPSP 305 (673)
T ss_pred cceeEEEeeecc
Confidence 999999998765
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=169.26 Aligned_cols=407 Identities=10% Similarity=0.103 Sum_probs=258.6
Q ss_pred EEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
-++|||+|+|+|+++.- .+.|-|..+-+..+.. .--..|..+.|..|... .+.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999766 6888888775543311 22456888999998874 556677899999999999988888
Q ss_pred ecCCCcceEEEeecccCCc-eEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 481 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
+.....++.+++|+| || ..|.+...+-.|.+|.+.+.+.... ......+..++|+|||++.+.++.. |-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 888889999999965 55 5677788899999999988665443 3334456889999999999988642 22233444
Q ss_pred EecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEE
Q 001367 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1091)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1091)
..-..-..++.+.... .....+.|+|||+.+++-. -+-.|+.|.. . -.+..++|+|.+++|
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laVwd~~Leykv~aYe~-----------~---lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAVWDNVLEYKVYAYER-----------G---LGLKFVEWSPCNQFL 225 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEEecchhhheeeeeee-----------c---cceeEEEeccccceE
Confidence 3333444555555544 5677899999998877632 2223332221 1 146889999999999
Q ss_pred EEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccccc
Q 001367 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFA 717 (1091)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~ 717 (1091)
++|+.|+.+++.+--+-+.+..+- |-..+ .|-+..+-..++.
T Consensus 226 avGsyD~~lrvlnh~tWk~f~efl-hl~s~-------------------------------------~dp~~~~~~ke~~ 267 (447)
T KOG4497|consen 226 AVGSYDQMLRVLNHFTWKPFGEFL-HLCSY-------------------------------------HDPTLHLLEKETF 267 (447)
T ss_pred Eeeccchhhhhhceeeeeehhhhc-cchhc-------------------------------------cCchhhhhhhhhc
Confidence 999999999987654333332211 00000 0001000000000
Q ss_pred CCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCC
Q 001367 718 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 797 (1091)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1091)
.. -.-...++.|.|..- ...+|.......+.... ...+....+.+. .
T Consensus 268 ~~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~---pv~~~~lkp~tD-------~-- 314 (447)
T KOG4497|consen 268 SI------------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQMT---PVKVHKLKPPTD-------F-- 314 (447)
T ss_pred ch------------hhhcccccccCCCcc---------ccCccccchhhhhhhhc---ceeeecccCCCC-------C--
Confidence 00 000112233333211 00111110000000000 000000011111 1
Q ss_pred CCCCCCeeEEEecCCCCEEEEEeC---CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC
Q 001367 798 SNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 798 ~~~~~~v~~l~~s~dg~~la~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~ 874 (1091)
.+....+.-++||+|..++++-.| +.+.+||++..+....+. ...+|.+..|.| +...|+.+.....+++|....
T Consensus 315 pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 315 PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCC
Confidence 124556788999999999999885 679999998776654443 567899999999 777888888788899998876
Q ss_pred cceeeeeccccCCeEEEEECCCCCEEEEEeCCCc
Q 001367 875 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 908 (1091)
Q Consensus 875 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~ 908 (1091)
..++..- +..-.|..+.|.-+|..++-.+.|..
T Consensus 393 ~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 393 PRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 5554433 33367999999999999999998874
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-16 Score=186.48 Aligned_cols=369 Identities=23% Similarity=0.358 Sum_probs=274.1
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC-ceeeeceeEEeccccccceeeeeecCCC-ccEEEEEE-C
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S 405 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s 405 (1091)
.+..|...+.++.|.+.+. .++.++.|+.+.+|+...+. .+.. +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 5678999999999999998 56888889999999998886 3322 33322 47777777 8
Q ss_pred CCCC-EEEEEEC-CCEEEEEEeeC-CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC-CCcEEEEeCCCCceeEEe
Q 001367 406 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 406 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~ 481 (1091)
+++. +++..+. |+.+.+|+... .. ....+..|...|..++|+|+++ .+++++. |+.+++|++.++..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGK---LIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCe---EEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 33 2336778999999999999999 6777775 999999999999999999
Q ss_pred cCCCcceEEEeecccCCce-EEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
.+|...|.++++. +++. .+++++.|+.|++||........ .+..+.... ...|++++..+++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 9999999999997 4554 55666999999999888666555 466666654 3389999988886654 667999
Q ss_pred EecCCcee-eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe--CCCCCCCCceEEEccCCCE
Q 001367 560 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 560 wd~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~ 636 (1091)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+........ .+.. .+..+.+.+++..
T Consensus 268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 342 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSL 342 (466)
T ss_pred eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCE
Confidence 99987664 44444443 789999999988899888888899999998887776665 3333 5788888434355
Q ss_pred EEEE-ECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccc-cccccccccccc
Q 001367 637 LAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEIS-VEAENKSEVEKP 714 (1091)
Q Consensus 637 l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s-~~~d~~i~~w~~ 714 (1091)
++.+ ..|+.+.+|+............... +..+.+. ++ ..... +..++.+.+|+.
T Consensus 343 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------------------~~-~~~~~~~~~~~~~~~~~~ 399 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS---------------------PD-GRVVSSGSTDGTVRLWDL 399 (466)
T ss_pred EEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC---------------------CC-CCEEEEecCCCceEEEec
Confidence 6665 6788999999988762222222211 5555553 32 23333 577889999997
Q ss_pred cccCCcccceeecCCcccc-ccEEEEEEecCCCeEEEeecCceEEEeecCC
Q 001367 715 LFARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR 764 (1091)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~ 764 (1091)
.......... .. ..+....+++++..++.++.++.+++|+...
T Consensus 400 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 400 STGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ccCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 6332211111 11 6888999999999999988899999998643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-16 Score=181.86 Aligned_cols=372 Identities=23% Similarity=0.397 Sum_probs=283.6
Q ss_pred EeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-eeEEecCCCc-ceEEEeecccCCce-EEEEEec-CCeEE
Q 001367 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKIK 512 (1091)
Q Consensus 437 ~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i~ 512 (1091)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 557899999999999999 78888899999999988887 6777766443 77777775 55555 5555444 99999
Q ss_pred EEecCC-CCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCC
Q 001367 513 AWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1091)
Q Consensus 513 iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 591 (1091)
+|+... ......+..+...+..++|+|+++.+++++. .++.+.+|+...+..+..+.+|. ..+.+++|+|++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 211 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGG 211 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcc
Confidence 999998 7777788889999999999999997777743 36779999999988888888866 8999999999998
Q ss_pred -EEEEEeCCCeEEEEECCCCeeEE-EEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCe-ecccccccccce
Q 001367 592 -QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNLR 668 (1091)
Q Consensus 592 -~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~ 668 (1091)
.+++++.|+.|++||...+..+. .+..+.. .. ...|++++.++++++.|+.+++|+...... ....
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------- 280 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-------- 280 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------
Confidence 44445899999999988777777 4655544 22 228999998899999999999999875533 1000
Q ss_pred eeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeE
Q 001367 669 KLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 748 (1091)
Q Consensus 669 ~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 748 (1091)
..|...+.++.|.|++..+
T Consensus 281 -------------------------------------------------------------~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 281 -------------------------------------------------------------SGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred -------------------------------------------------------------ecCCccEEEEEECCCCCEE
Confidence 1145677788888888888
Q ss_pred EEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEE--eCCeEEE
Q 001367 749 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVISL 826 (1091)
Q Consensus 749 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~dg~i~i 826 (1091)
++++.++.+.+|+...... ..... ...|...+..+.+.+++..++.+ .++.+.+
T Consensus 300 ~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 355 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355 (466)
T ss_pred EEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEe
Confidence 8877788888887543321 11111 11355578888884343566655 3688999
Q ss_pred EEccCceeEEEecCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeC
Q 001367 827 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 905 (1091)
Q Consensus 827 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~-g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~ 905 (1091)
|+............. ..+..+.+++ + ..+.. +..++.+.+|+............+...+....+++++..+++++.
T Consensus 356 ~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (466)
T COG2319 356 WDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432 (466)
T ss_pred eecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecC
Confidence 999887733333322 2288999998 7 55554 789999999999988877766655477999999999999999999
Q ss_pred CCcEEEEEcCC
Q 001367 906 DAQIFVWDVDG 916 (1091)
Q Consensus 906 Dg~i~vwd~~~ 916 (1091)
++.+++|+...
T Consensus 433 ~~~~~~~~~~~ 443 (466)
T COG2319 433 DNTIRLWDLKT 443 (466)
T ss_pred CCcEEEEeccC
Confidence 99999999987
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-19 Score=178.54 Aligned_cols=306 Identities=13% Similarity=0.114 Sum_probs=222.1
Q ss_pred CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccc
Q 001367 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 734 (1091)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 734 (1091)
......+.+...|++++|+| ..+.+.+++|+..|.|-+||+.+..+..-..+.+.. |..
T Consensus 177 ~~~~v~kv~~~Rit~l~fHP-------------------t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~--hs~ 235 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHP-------------------TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP--HSG 235 (498)
T ss_pred eecceeEecccceEEEEecc-------------------cCcceEEEEccCCCcEEEEecCCCCCccCceEEecc--CCc
Confidence 34445566778899999987 455678899999999999999644444444444433 899
Q ss_pred cEEEEEEecCC-CeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCC
Q 001367 735 KISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 813 (1091)
Q Consensus 735 ~i~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 813 (1091)
+|.++.|+|.. ..+++.+.||++++-|+...... .++... .....+..+.|+.+.
T Consensus 236 ~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~v~s~~-------------~d~~~fs~~d~~~e~ 291 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------EVLSLD-------------TDNIWFSSLDFSAES 291 (498)
T ss_pred cccceEecCCChhheeeeccCceeeeeeecchhhH-----------HHhhcC-------------ccceeeeeccccCCC
Confidence 99999999975 46888999999999887654321 011111 134556778888888
Q ss_pred CEEEEEeC-CeEEEEEccCcee-EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce----eeeeccccCC
Q 001367 814 AYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHSKR 887 (1091)
Q Consensus 814 ~~la~~~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~----~~~l~~h~~~ 887 (1091)
..++.+.+ |...+||+.+.+. ...+.-|...|+.+++.|-...+||+++.|++++|||++.-.. +.....|...
T Consensus 292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs 371 (498)
T KOG4328|consen 292 RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS 371 (498)
T ss_pred ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccce
Confidence 88888875 8999999987654 5666778889999999998888999999999999999986321 2333459999
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcC---CC-ceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEE
Q 001367 888 VTGLVFSDALNILVSSGGDAQIFVWDVD---GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYE 962 (1091)
Q Consensus 888 V~~l~~spdg~~las~s~Dg~i~vwd~~---~~-~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd 962 (1091)
|.+..|||++..|+|.+.|..|+|||.+ .. +...........+..- ......|.||..+++++ .-..|-|+|
T Consensus 372 V~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl---T~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 372 VNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL---TPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccc---cchhheeCCCccEEEEeccCcceeEEc
Confidence 9999999998889999999999999985 21 1111111111111111 35577999999999996 567799999
Q ss_pred cCCcceeeeeecCCccCEEE-EEEeeCCC-EEEEEEcCCcEEEEeCCC
Q 001367 963 AEELTCLKQWFPISSVPISQ-ATFSCDCR-MVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 963 ~~~~~~~~~~~~~h~~~v~~-v~fs~dg~-~l~t~~~dg~v~iwd~~~ 1008 (1091)
...++.+.++..+....|.+ ..|.|-+. +++-++..|.|+||.-..
T Consensus 449 ~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 449 GNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred CCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 99988887765544445555 47889777 455555567888886543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9e-19 Score=173.58 Aligned_cols=265 Identities=16% Similarity=0.203 Sum_probs=186.7
Q ss_pred eecccCCCCcEEEEEcCCC-ceEEEEEcCCCcEEEEEcCCCCce-eeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 328 QTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg-~~llasg~~dg~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
.....|.+.+..+.-++-| ..++|+=+..|.|.||++...-.. ......+-+ ....+...+.+|...=..++||
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~LdWS 220 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYGLDWS 220 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccceeeecc
Confidence 3445777788888888765 346777788899999997532111 000000000 0111222378899999999999
Q ss_pred C-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC---ceeEEe
Q 001367 406 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 481 (1091)
Q Consensus 406 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~ 481 (1091)
| ....|++|.--+.|++|...+|.-..-...+.+|+..|..++|||..+. +|++||-||+|+|||++.+ .++.+
T Consensus 221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~- 298 (440)
T KOG0302|consen 221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST- 298 (440)
T ss_pred cccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-
Confidence 9 3335778877788999999987654444457789999999999998776 8999999999999999988 33433
Q ss_pred cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC---CceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
+.|.+.|+.+.|+. +-.+|++|+.||+++|||++.. .....++.|..+|+++.|+|....++.++. .+.+|.
T Consensus 299 kAh~sDVNVISWnr--~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~Qit 373 (440)
T KOG0302|consen 299 KAHNSDVNVISWNR--REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQIT 373 (440)
T ss_pred eccCCceeeEEccC--CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEE
Confidence 78999999999954 3349999999999999999864 455688899999999999996654444432 277899
Q ss_pred EEecCCcee----------------eEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEE
Q 001367 559 EWNESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIW 605 (1091)
Q Consensus 559 iwd~~~~~~----------------~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iw 605 (1091)
+||+....- -+.+--|. ....+..+.|++.-. ++++.+.|| +.||
T Consensus 374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 999863211 01111121 124677888988754 556666666 3444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=176.26 Aligned_cols=294 Identities=16% Similarity=0.214 Sum_probs=215.0
Q ss_pred EEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE--ECCCeEEEEECCCCCeecccccccccceee
Q 001367 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKL 670 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 670 (1091)
+.+++...++++||.........+..+...+.+.++.|+.... |+++ +.|..+++|.-... ... |
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~--~~~-------V--- 71 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK--TPE-------V--- 71 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCC--CCc-------c---
Confidence 3444455579999998877776666666666789999988664 4443 45777888864322 000 0
Q ss_pred eeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEE
Q 001367 671 SVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 750 (1091)
Q Consensus 671 ~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 750 (1091)
-+-... ....-.+++......++++
T Consensus 72 ---------------------------------------p~~~k~----------------~gd~~~Cv~~~s~S~y~~s 96 (673)
T KOG4378|consen 72 ---------------------------------------PRVRKL----------------TGDNAFCVACASQSLYEIS 96 (673)
T ss_pred ---------------------------------------ceeecc----------------ccchHHHHhhhhcceeeec
Confidence 000000 0011122333334478999
Q ss_pred eecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeC-CeEEEEEc
Q 001367 751 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 829 (1091)
Q Consensus 751 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~ 829 (1091)
++..+.++|||+... +....+. +|...|+++.+.-...+||++++ |.|.|-.+
T Consensus 97 gG~~~~Vkiwdl~~k------------------------l~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAK------------------------LIHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred cCcCceeeehhhHHH------------------------HHhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 999999999997632 1111122 48899999999999999999995 88999999
Q ss_pred cCceeEEEecCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee-eccccCCeEEEEECCC-CCEEEEEeCC
Q 001367 830 MTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDA-LNILVSSGGD 906 (1091)
Q Consensus 830 ~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~-l~~h~~~V~~l~~spd-g~~las~s~D 906 (1091)
.++....+|....+ .++-+.|+|....+|.+++.+|.|.+||+....++.. ...|..+...++|+|. ..+|++.|.|
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 99988888876544 5668999996667788899999999999998776644 4679999999999995 4678999999
Q ss_pred CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcceeeeeecCCccCEEEEEE
Q 001367 907 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATF 985 (1091)
Q Consensus 907 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~f 985 (1091)
..|.+||+....... ++. +..+...++|+++|.+|++| ..|.|..||++..+.....+..|...|++++|
T Consensus 231 kki~~yD~~s~~s~~--~l~-------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 231 KKINIYDIRSQASTD--RLT-------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ceEEEeecccccccc--eee-------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 999999998643222 111 11358899999999999996 67899999999877766667789999999999
Q ss_pred eeCC
Q 001367 986 SCDC 989 (1091)
Q Consensus 986 s~dg 989 (1091)
-+.-
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 8764
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-17 Score=173.86 Aligned_cols=598 Identities=11% Similarity=0.119 Sum_probs=357.5
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC-------
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG------- 408 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg------- 408 (1091)
.-.++.|+|.| |+|-|+. ..|.|-|..+-+.+.. +.-|...|+.+.|.|-.
T Consensus 17 N~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~llS 74 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLLS 74 (1062)
T ss_pred cccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhccC
Confidence 57789999999 5688875 6789999988887765 66699999999998731
Q ss_pred -----CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC---CCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 409 -----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 409 -----~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
-+||++...|.|.+||...+.... .+..|..++..++|-+ +.+. +|+.-....+|.+|+..+|+....
T Consensus 75 ~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~Wk 150 (1062)
T KOG1912|consen 75 PSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFWK 150 (1062)
T ss_pred ccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceeec
Confidence 267788888999999999876544 5678889999999965 3434 566666678999999999999988
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCC------ceeee-cCCCC-----------------------
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDY-DAPGL----------------------- 530 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~-~~~~~----------------------- 530 (1091)
.........++.+.|-.. +.+..-+..|.+.+.+.-... ..+.+ ..+..
T Consensus 151 ~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~f 229 (1062)
T KOG1912|consen 151 YDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYF 229 (1062)
T ss_pred cccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhH
Confidence 876666777787776533 455555566666666542111 11111 11111
Q ss_pred --cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCC--CEEEEEeCCCeEEEEE
Q 001367 531 --GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWD 606 (1091)
Q Consensus 531 --~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~l~~~s~dg~i~iwd 606 (1091)
-...++|+|.-+.++.... ...+.++|++-..++....-.. +.+.-+.+-|++ ..+++.-.||.+.+|-
T Consensus 230 ity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 230 ITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred HHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 0123567776554444433 2339999999888887776655 556666666664 5789999999999997
Q ss_pred CCCC----------------eeEEEEeCCCCCCCCceEEEccC-CCEEEEEECCCeEEEEECCCCCeecccc--------
Q 001367 607 MNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG-------- 661 (1091)
Q Consensus 607 ~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------- 661 (1091)
.+.. .....+..-... .....+..|. ...+++...+|...+|.+.+++......
T Consensus 303 rk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~ 381 (1062)
T KOG1912|consen 303 RKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVL 381 (1062)
T ss_pred eeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccc
Confidence 6542 112221111111 1122233343 4456666677888889888653221111
Q ss_pred -----------------------cccccceeeeeccccccccccccCCcccCCCCCCCC-------Cccccccccccccc
Q 001367 662 -----------------------VLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDV-------KPEISVEAENKSEV 711 (1091)
Q Consensus 662 -----------------------~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~-------~~l~s~~~d~~i~~ 711 (1091)
+|.....+....|.+.. ......|.+ .+++.|...|+|.+
T Consensus 382 pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~----------t~~~~~p~~n~~~~~~pLvAvGT~sGTV~v 451 (1062)
T KOG1912|consen 382 PFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPEL----------TKVENDPGGNTPAGTVPLVAVGTNSGTVDV 451 (1062)
T ss_pred cccccCceeehhhccccchhhcCCCCCCceeeecccCccc----------ceeecCCCCCccceeeeeEEeecCCceEEE
Confidence 11222222222222111 111112222 34678889999999
Q ss_pred ccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCcee
Q 001367 712 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 791 (1091)
Q Consensus 712 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1091)
+|+.++.-.... ..|...|.++.|..... +++.+.+... +....-.+.+.+-++.+|....
T Consensus 452 vdvst~~v~~~f------svht~~VkgleW~g~ss-lvSfsys~~n------------~~sg~vrN~l~vtdLrtGlsk~ 512 (1062)
T KOG1912|consen 452 VDVSTNAVAASF------SVHTSLVKGLEWLGNSS-LVSFSYSHVN------------SASGGVRNDLVVTDLRTGLSKR 512 (1062)
T ss_pred EEecchhhhhhh------cccccceeeeeecccee-EEEeeecccc------------ccccceeeeEEEEEcccccccc
Confidence 998754333222 23888999999987776 4443322000 0000011234555666666433
Q ss_pred eecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEc-CC---------------C
Q 001367 792 VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------D 854 (1091)
Q Consensus 792 ~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------~ 854 (1091)
...+++ ..+.+|..+..|..|+|++... +.-+.+||+++..+++.....-..++.++|+ |. .
T Consensus 513 fR~l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms 591 (1062)
T KOG1912|consen 513 FRGLQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMS 591 (1062)
T ss_pred cccCCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhh
Confidence 332322 4678999999999999999998 6779999998887776665455568888888 31 1
Q ss_pred CcEEEEEeCCCeEEEEeccC-------ccee-eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001367 855 NNVIAIGMDDSTILIYNARS-------SEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 926 (1091)
Q Consensus 855 ~~~la~g~~dg~i~iwd~~~-------~~~~-~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~ 926 (1091)
.+..+..+ +..+++.+.. +... ...+...-.+.+++| .+..|+.|..+|.+.+||+.......
T Consensus 592 ~n~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg----- 662 (1062)
T KOG1912|consen 592 ENLVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG----- 662 (1062)
T ss_pred hceeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC-----
Confidence 12233333 2233333221 1111 111111223444667 46689999999999999987632111
Q ss_pred ccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCcc--CEEEEEEeeCCCEEEEEEcCCcEEEE
Q 001367 927 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV--PISQATFSCDCRMVFTSFVDGTLSIH 1004 (1091)
Q Consensus 927 ~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~--~v~~v~fs~dg~~l~t~~~dg~v~iw 1004 (1091)
.. .............+-|....+++-...-+-+||.+....+..+ .|... .+..+.+......++ ..|.++|+-
T Consensus 663 ~~-d~p~~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~ 738 (1062)
T KOG1912|consen 663 VR-DSPDPRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFR 738 (1062)
T ss_pred cc-CCCCchhhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEE
Confidence 00 0111001223334445444555556667899999888887775 34333 334444444444333 345578877
Q ss_pred eCCCCce
Q 001367 1005 EASNLEV 1011 (1091)
Q Consensus 1005 d~~~~~~ 1011 (1091)
.+.....
T Consensus 739 ~m~mks~ 745 (1062)
T KOG1912|consen 739 VMPMKSP 745 (1062)
T ss_pred eccccCC
Confidence 6665443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=166.77 Aligned_cols=303 Identities=13% Similarity=0.147 Sum_probs=216.4
Q ss_pred cccEEEEEEecCCC-eEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 733 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 733 ~~~i~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
..++.++.|.+++. .+++++.|..+++|.+......... ......-.+. .|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence 45788899988877 8999999999999998765431111 0101111222 4999999999999
Q ss_pred CCCEEEEEeC-CeEEEEEcc--------C--------ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC
Q 001367 812 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 812 dg~~la~~~d-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~ 874 (1091)
+|..+|+|+| |.|.+|... + +...+.+.+|...|..++|+| ++.++++++.|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 9999999985 889999765 2 345566788999999999999 899999999999999999999
Q ss_pred cceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee---eeccCCCcC------------CCCCce
Q 001367 875 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMT------------LAPSET 939 (1091)
Q Consensus 875 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~---~~~~~~~~~------------~~~~i~ 939 (1091)
|+....+.+|...|..++|.|-++++++-+.|...+++.+.......... +....++.. ...-..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777765433211110 111111100 002346
Q ss_pred EEEEcCCCCEEEEE-----ecC-----eEEEEEcCCcceeeeeecCCccCEEEEEEee------------------CCCE
Q 001367 940 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC------------------DCRM 991 (1091)
Q Consensus 940 ~l~fs~dg~~la~~-----~d~-----~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~------------------dg~~ 991 (1091)
.++|+|||.+|++. ..+ ..++|+-.........++.-..++..+.|+| -+-.
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 78999999999972 222 3456664433333222333355566666665 1223
Q ss_pred EEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCC
Q 001367 992 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1064 (1091)
Q Consensus 992 l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~ 1064 (1091)
+|.++ ...|+|||.++-..++...-..| .+++ .++|++ ||..|+..+.||.+-+-.+...+.
T Consensus 315 faiAt-~~svyvydtq~~~P~~~v~nihy-------~~iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 315 FAIAT-KNSVYVYDTQTLEPLAVVDNIHY-------SAIT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEEee-cceEEEeccccccceEEEeeeee-------eeec--ceeecC-CCcEEEEeccCCceEEEEEcchhc
Confidence 44554 45899999999888876663333 3333 678998 699999999999988877766553
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-17 Score=166.85 Aligned_cols=499 Identities=14% Similarity=0.110 Sum_probs=297.0
Q ss_pred CCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEE------cCCCCceEEEEeeCCCcE
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~------s~d~~~~~l~s~~~d~~i 467 (1091)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.+ .... .+ ....|....+ ...+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 377788899999988887777655555555555432 2211 11 1111111111 011111267888889999
Q ss_pred EEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
.+.+ +.++.-.....|.+.+.+-.|+ +||.-|++++.||.|++|.- ++-.+.++.....+|.|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~--~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWS--PDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccC--CCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 8888888999999999999884 56778999999999999963 333444555667799999999999888877
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
.. +.+.+=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..++||.. |..+..-..+.. +|++
T Consensus 164 ~g-----~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITS 232 (737)
T KOG1524|consen 164 QG-----GHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITS 232 (737)
T ss_pred cC-----CeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceee
Confidence 53 347777777666677788877 899999999999999999999999999975 444444444444 7999
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
++|+|+ +.+++++. +++++= +
T Consensus 233 va~npd-~~~~v~S~-nt~R~~--------------------------------------------~------------- 253 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSY-NTARFS--------------------------------------------S------------- 253 (737)
T ss_pred eeeccc-cceeeeee-eeeeec--------------------------------------------C-------------
Confidence 999999 66666654 233310 0
Q ss_pred ccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCC
Q 001367 708 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 787 (1091)
Q Consensus 708 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1091)
...+.|..++||+||..++.++..|.+.+--.-.
T Consensus 254 -----------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie----------------------- 287 (737)
T KOG1524|consen 254 -----------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIE----------------------- 287 (737)
T ss_pred -----------------------CCccceEEEEEcCCCceeeccccCceEEEeeeeh-----------------------
Confidence 1346788899999999999888888776521100
Q ss_pred CceeeecCCCCCCCCCeeEEEecCCCCEEEEE-eCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001367 788 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST 866 (1091)
Q Consensus 788 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~ 866 (1091)
..+ + -+.+=++. ....|.+-|+.++.+ ..+ .....+...+..- + +|+++. ...
T Consensus 288 -----q~l--------~-------~~n~~~t~~~r~~I~vrdV~~~v~-d~L-E~p~rv~k~sL~Y--~-hLvvaT-s~q 341 (737)
T KOG1524|consen 288 -----QQL--------V-------SGNLKATSKSRKSITVRDVATGVQ-DIL-EFPQRVVKFSLGY--G-HLVVAT-SLQ 341 (737)
T ss_pred -----hhh--------h-------hccceeEeeccceEEeehhhhhHH-HHh-hCccceeeeeece--e-EEEEEe-ccE
Confidence 000 0 00111111 234566666666544 222 2344565666543 3 333333 235
Q ss_pred EEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCC
Q 001367 867 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 946 (1091)
Q Consensus 867 i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d 946 (1091)
|++|.-........+.+....+.-+.-+. ..+++ .+..+|.++..+...... ..+.|... .....-..|-.
T Consensus 342 vyiys~knwntpiiidgre~tr~lieq~e-k~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtlsLa 412 (737)
T KOG1524|consen 342 VYIYSEKNWNTPIIIDGREDTRNLIEQGE-KYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLSLA 412 (737)
T ss_pred EEEEecCCccCcEEEeccccchhHhhhhh-hheEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeeecc
Confidence 77776554433334444333322111111 12222 233346666555422111 01111111 11222233333
Q ss_pred CCEEEE--Eec-CeEEEEEc-CCcceeeeee-cCCccCEEEEEEe----eCCCEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 947 QTRFLL--VHE-THLAIYEA-EELTCLKQWF-PISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 947 g~~la~--~~d-~~i~vwd~-~~~~~~~~~~-~~h~~~v~~v~fs----~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
...|+. ..| .-+.++|. .+|+....-. ..|...|..++.. ++++.++.-...+.+.|=.+.+.....++..
T Consensus 413 ndtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~K 492 (737)
T KOG1524|consen 413 NDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYK 492 (737)
T ss_pred cceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhh
Confidence 445555 233 35788888 6666543211 2244555555554 3556777777777777766554322222221
Q ss_pred ccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1018 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1018 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
.... | ..++|+ |...+++|-.|+++.+|-.++..
T Consensus 493 iGTm--------V--htLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 493 IGTM--------V--HTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhhh--------h--hhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 1111 1 235676 46779999999999999986643
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-16 Score=169.58 Aligned_cols=487 Identities=12% Similarity=0.109 Sum_probs=292.7
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC----------CCceEEEEeeCCCc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDKT 466 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d----------~~~~~l~s~~~d~~ 466 (1091)
..-.++.|+|.| ++|.|+.. .|.+-|..+-+.+. .+.-|...|+.+.|.|- ..+++++++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346788999877 67777654 58888887765554 67789999999999763 24567888999999
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCc--eEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC-CCCE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 543 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~ 543 (1091)
|.+||...+..+..+..|..++..++|.+..+. ..|++-....++.+|+..+++.............|+.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999876554 4678888889999999999999988887777777888888 4455
Q ss_pred EEEEecCCCCceEEEEEecC-------CceeeEEEecccc-------------c---ccc------eEEEEEcCCCCEEE
Q 001367 544 LFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL-------------Q---HNS------VSVVHFDTAKDQIL 594 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~-------------~---~~~------v~~v~~~~~~~~l~ 594 (1091)
+...+. .|.+.+-+.- .++..+.-..|.. + ... ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 544433 3344444322 1222222212110 0 000 11246788877777
Q ss_pred EEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCC--CEEEEEECCCeEEEEECCCCCeeccc-----cc-cccc
Q 001367 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----GV-LSDN 666 (1091)
Q Consensus 595 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~-~~~~ 666 (1091)
.......+.++|++-..++.....+.+ .+.-+.+-|++ ..|++.-.||.+.+|-.+.-....+. .. ....
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q 324 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQ 324 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccc
Confidence 777788999999999999988887765 34556666654 57899999999999987653211111 00 0111
Q ss_pred ceeeeeccccccccccccCCcccCCCCCCC-CCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecC-
Q 001367 667 LRKLSVNPISTVTGAGIANGSVSNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG- 744 (1091)
Q Consensus 667 v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d- 744 (1091)
+.++..-..-.. +... .-|. ...++.--.+|.+.+|.+..+......... ...-+..+.|..+
T Consensus 325 ~~~vr~m~~~rp---------~~~~-~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~~~~ 389 (1062)
T KOG1912|consen 325 VHVVRPMEEFRP---------VIGA-SCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFNLST 389 (1062)
T ss_pred eEEEeechhccc---------ceee-cCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----cccccccccccCce
Confidence 111111100000 0000 0122 333444445677788887632221111100 0000111111111
Q ss_pred ----CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe
Q 001367 745 ----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 820 (1091)
Q Consensus 745 ----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 820 (1091)
...++..+.||. ...|..- .-.++........ .. .......+. -.++|.|.
T Consensus 390 ~~v~k~~l~~LS~dg~-----------h~sGs~~-----~~~~p~p~~t~~~-~~----p~~n~~~~~----~pLvAvGT 444 (1062)
T KOG1912|consen 390 KLVGKTSLISLSDDGS-----------HSSGSTC-----VRMRPMPELTKVE-ND----PGGNTPAGT----VPLVAVGT 444 (1062)
T ss_pred eehhhccccchhhcCC-----------CCCCcee-----eecccCcccceee-cC----CCCCcccee----eeeEEeec
Confidence 111222222220 0001000 0000000000000 00 000000111 12566666
Q ss_pred -CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe----------CCCeEEEEeccCccee--eeec-cccC
Q 001367 821 -GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM----------DDSTILIYNARSSEVI--SKLE-GHSK 886 (1091)
Q Consensus 821 -dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~----------~dg~i~iwd~~~~~~~--~~l~-~h~~ 886 (1091)
.|+|.++|+.++...+.+..|...|.++.|.. ..+ |++.+ .-+.+.+-|+.+|... +.++ ....
T Consensus 445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~des 522 (1062)
T KOG1912|consen 445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDES 522 (1062)
T ss_pred CCceEEEEEecchhhhhhhcccccceeeeeecc-cee-EEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcC
Confidence 69999999999999999999999999999975 333 44332 2246788899998543 2233 2557
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEc
Q 001367 887 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 944 (1091)
Q Consensus 887 ~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs 944 (1091)
+|+.+..|.-|+||+..-.|.-+.+||+++.. +++...-..+ -++.+.|+
T Consensus 523 pI~~irvS~~~~yLai~Fr~~plEiwd~kt~~-----~lr~mS~a~P---~it~leWs 572 (1062)
T KOG1912|consen 523 PIRAIRVSSSGRYLAILFRREPLEIWDLKTLR-----MLRLMSLALP---LITVLEWS 572 (1062)
T ss_pred cceeeeecccCceEEEEecccchHHHhhccch-----HHHHHhhcCC---cEEEEeec
Confidence 99999999999999999999999999998733 3333222221 48888888
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=160.88 Aligned_cols=286 Identities=14% Similarity=0.203 Sum_probs=205.3
Q ss_pred cEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEecccccccee--eeeecCCCccEEEEEEC-------CC
Q 001367 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK--TALVRDPGVSVNRVVWS-------PD 407 (1091)
Q Consensus 337 V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~l~~s-------pd 407 (1091)
...+.|||||.-+ .+-+.|..+.+|++...-.-..- .....++ ..+-......|...+|- |+
T Consensus 52 ~kgckWSPDGSci-L~~sedn~l~~~nlP~dlys~~~--------~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~ 122 (406)
T KOG2919|consen 52 LKGCKWSPDGSCI-LSLSEDNCLNCWNLPFDLYSKKA--------DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS 122 (406)
T ss_pred hccceeCCCCceE-EeecccCeeeEEecChhhcccCC--------CCccccccceeEEeccCCEEEEEEeeeccccCCCc
Confidence 3457899999854 66788999999998431110000 0000000 00011123566677775 67
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEecccc---CeeEEEEcCCCCceEEEEeeCCCcEEEEeC-CCCcee--EEe
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF 481 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~-~~~~~~--~~~ 481 (1091)
..++|+.+.+.-|++||.-+|+...... --.|.. ...+++|+|||. .|+ ++....|+++|+ +.|+.- ...
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred cceeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhh
Confidence 8899999999999999999997544221 223443 456899999999 565 455789999998 445322 111
Q ss_pred -----cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 482 -----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 482 -----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
.+..+.+.+++|+|. +...++.++...++-|+.-........+.+|.+.|+.++|.++|+.|++++. .+..
T Consensus 199 ~~~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dk 274 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDK 274 (406)
T ss_pred hhcccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCe
Confidence 233677888899876 4468999999999999998999999999999999999999999999999875 2556
Q ss_pred EEEEecCC-ceeeEEEecccccccceEE--EEEcCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCCCCCCceEEEcc
Q 001367 557 LVEWNESE-GAIKRTYQGLQLQHNSVSV--VHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 557 i~iwd~~~-~~~~~~~~~~~~~~~~v~~--v~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
|..||++. +.++..+..|.. ..-.. ....|++++|++|+.||.|++||+++ |.....+..+.. .++.++++|
T Consensus 275 Il~WDiR~~~~pv~~L~rhv~--~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP 350 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYALERHVG--DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNP 350 (406)
T ss_pred EEEEeehhccchhhhhhhhcc--CccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCc
Confidence 99999985 456666766662 12233 34568899999999999999999998 665666655543 689999999
Q ss_pred CCCEEEEEECC
Q 001367 633 NGTLLAVIANE 643 (1091)
Q Consensus 633 ~~~~l~~~~~d 643 (1091)
--.++++++..
T Consensus 351 ~mpilatssGq 361 (406)
T KOG2919|consen 351 IMPILATSSGQ 361 (406)
T ss_pred ccceeeeccCc
Confidence 98888887654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=165.73 Aligned_cols=237 Identities=16% Similarity=0.271 Sum_probs=184.7
Q ss_pred eecCCCccEEEEEECC-CCCEEEEEECCCEEEEEEeeCCcc----cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC
Q 001367 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
.+.||+++|..++|+| +...||+||.|.+|.||.+..+.. ......+.||...|.-++|+|.... +|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4889999999999999 788999999999999999976543 2345578999999999999998877 789999999
Q ss_pred cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC-cEEEEEEcCCCCEE
Q 001367 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL 544 (1091)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l 544 (1091)
+|.+||+.+|+.+.++. |...|++++| +.||.++++.+.|+.|+|||.++++....-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sf--n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSF--NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEe--ccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 9999999999 55888999999999999999999988887766654 455667888888 6
Q ss_pred EEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee-EEEEeCCCCC
Q 001367 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL-LTTIDAGGGL 622 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~-~~~~~~~~~~ 622 (1091)
++.+.++-.+.++-+||...-+.-..+.... ..+.|.--.|.+|.+.++.++ .|+.|+-|.+....+ +.-+..-...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 6767777778999999977543322222111 134566667889888887654 899999999877653 2333222222
Q ss_pred CCCceEEEccC
Q 001367 623 PENPRICFNKN 633 (1091)
Q Consensus 623 ~~v~~v~~s~~ 633 (1091)
..-..+.|.|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 33456666664
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=193.50 Aligned_cols=286 Identities=19% Similarity=0.282 Sum_probs=220.6
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
.++.|.||...|.|+.|...|+ .+++|+.|..|+||..+++.++.. ..||++.|+.++.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccc
Confidence 4466889999999999999998 569999999999999999999976 88999999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE---ec
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FE 482 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~ 482 (1091)
.+..++|+++.|..|++|.+.++..+. .+.||++.|++++|+|- .+.+.||++++||..-.-.+.. ++
T Consensus 242 ~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 242 SNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLK 312 (1113)
T ss_pred hhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCC
Confidence 999999999999999999999997766 68899999999999993 3688899999999771111111 11
Q ss_pred C-CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCC-EEEEEecCCCCceEEEEE
Q 001367 483 G-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 483 ~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i~iw 560 (1091)
. ....+.++.| ..++.-+++++.|+.-..|.+.... .+...+.-+.++.|-. +.++.- .+..+.+|
T Consensus 313 ~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vw 380 (1113)
T KOG0644|consen 313 FTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVW 380 (1113)
T ss_pred cccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeeee
Confidence 1 1233444444 4566678999999988887553211 1111111222222322 222222 26678999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1091)
++.+|...+.+.+|. ..+..+.++|-+..++ +++.||...|||+-.|.+++..... + ..+....||+||..++.
T Consensus 381 nl~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred ecccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEec
Confidence 999999999999988 8999999999887665 5899999999999999888877643 2 35677899999999999
Q ss_pred EECCCeEEEEECCCCCee
Q 001367 640 IANENRIKILETPESNSV 657 (1091)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~ 657 (1091)
..+-|.++|.....+...
T Consensus 456 sd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 456 SDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCCCceEEeccCCCccc
Confidence 999999999987765443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=169.47 Aligned_cols=173 Identities=22% Similarity=0.365 Sum_probs=147.4
Q ss_pred hheeeecccCCCCcEEEEEcC--CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHP--VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fsp--dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
...+.+..+|.++=.+++||| .|+ |++|..-+.|++|...+|.-... ..-+.+|+..|-.
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVED 262 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVED 262 (440)
T ss_pred cCceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceeec----------------Cccccccccchhh
Confidence 567788999999999999999 554 58888889999999998865432 1227789999999
Q ss_pred EEECCC-CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC---CCce
Q 001367 402 VVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSR 477 (1091)
Q Consensus 402 l~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~ 477 (1091)
++|||. ...+|+|+.||+|+|||+..+.....+ ..+.|.+.|+.|.|+.+-. +|++|+.||+++|||++ .+++
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCc
Confidence 999994 678999999999999999998543333 3478999999999998877 89999999999999987 4678
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1091)
+..|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus 340 VA~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 340 VATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ceeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 899999999999999998765 5888899999999999854
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-17 Score=160.09 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=146.3
Q ss_pred eeEEEecCCCCEEEEEeCCeEEEEEcc-CceeEE---Ee----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 804 VPCFALSKNDAYLFSASGGVISLYIVM-TFKTIL---TI----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 804 v~~l~~s~dg~~la~~~dg~i~iwd~~-~~~~~~---~~----~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
..+++|+|||..|..|....|++||+. .|..-. ++ .+..+-|.+++|+|.+.+.+|+|+...++-||.-..+
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 347888888888888888888888883 333211 11 1235678999999988889999999999999999999
Q ss_pred ceeeeeccccCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-
Q 001367 876 EVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 953 (1091)
Q Consensus 876 ~~~~~l~~h~~~V~~l~~spdg~~las~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~- 953 (1091)
.++..+-+|.+.|+.+.|.+||+.|.+|+. |-.|..||+.... ..+-.+..|......-......|+|++||+|
T Consensus 241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccC
Confidence 999999999999999999999999999875 6789999998743 2233333333211122244557999999996
Q ss_pred ecCeEEEEEcCC-cceeeeeecCCccCEEEEEEeeCCCEEEEEEcC
Q 001367 954 HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 998 (1091)
Q Consensus 954 ~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d 998 (1091)
.+|.|++||.++ |..+.. ...|...+..+++.|-=.+++|++..
T Consensus 317 tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 317 TDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence 899999999998 554554 55678899999999987778887654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-18 Score=173.10 Aligned_cols=213 Identities=17% Similarity=0.266 Sum_probs=171.9
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 408 (1091)
-.+|++.|-+++|..+-+.+||+||.|.+|++||+.+|++..+ +..|+..|.+++|+| ..
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s-------------------~~~~~k~Vq~l~wh~~~p 299 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS-------------------ITHHGKKVQTLEWHPYEP 299 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCccee-------------------hhhcCCceeEEEecCCCc
Confidence 4689999999999999989999999999999999999998865 667999999999999 67
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecCCCcc
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAP 487 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~ 487 (1091)
.+|++|+.|++|.+.|............ -.+.|..++|.|.... .++++..||+|+-+|++.. +++.+++.|.++
T Consensus 300 ~~LLsGs~D~~V~l~D~R~~~~s~~~wk---~~g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 300 SVLLSGSYDGTVALKDCRDPSNSGKEWK---FDGEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred eEEEeccccceEEeeeccCccccCceEE---eccceEEEEecCCCce-eEEEecCCceEEeeecCCCCCceeEEEeccCC
Confidence 8999999999999999985333332222 3456899999998876 7788889999999999864 899999999999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceee--ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
|.+++++.... .++++++.|+.|++|++........ ....-+...|+++.|+-.++++.++. .+.+++||+.+.
T Consensus 376 ISgl~~n~~~p-~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~---k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 376 ISGLSVNIQTP-GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGE---KAVLRVWDIFTN 451 (463)
T ss_pred cceEEecCCCC-cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCc---cceEEEeecccC
Confidence 99999976544 4899999999999999876554332 22222346778888887766655442 447999998876
Q ss_pred eeeE
Q 001367 566 AIKR 569 (1091)
Q Consensus 566 ~~~~ 569 (1091)
..++
T Consensus 452 ~~V~ 455 (463)
T KOG0270|consen 452 SPVR 455 (463)
T ss_pred hhHH
Confidence 5543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=162.67 Aligned_cols=302 Identities=12% Similarity=0.110 Sum_probs=213.9
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
+.+-+.+|.+.|.++.||.+++ +||+|+.|..++||++...-..++ ..+++. .-..|...|.|++|.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~ 114 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFD 114 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEc
Confidence 3345789999999999999998 789999999999999865322221 001111 123467899999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-e--eEEec
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-R--TYSFE 482 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~--~~~~~ 482 (1091)
...++|.+|+.+++|...|+++.+.+... .-....+.|..+..+|..+ .+++.+.++.|.+||..... . +..+.
T Consensus 115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A 191 (609)
T KOG4227|consen 115 LENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPA 191 (609)
T ss_pred cCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeec
Confidence 99999999999999999999997655421 1112334899999999977 79999999999999987654 2 22223
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-------eecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
.......++.|+|.. ..+|++.+..+-+-+||.+...... .+.......+++.|+|+|+.+++.-. ..
T Consensus 192 N~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~ 266 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GK 266 (609)
T ss_pred CCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cC
Confidence 344556677787754 3688999999999999987654332 11222234478899999999887643 22
Q ss_pred EEEEEecCCceee-EEEecccc----cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------
Q 001367 556 FLVEWNESEGAIK-RTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------------------- 610 (1091)
Q Consensus 556 ~i~iwd~~~~~~~-~~~~~~~~----~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~-------------------- 610 (1091)
.-.+||+.+..+. ..+. |.. ....+.+++|..|- .+++|+.+-.|++|.+...
T Consensus 267 ~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred CCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 2456777664432 2222 121 12356778887654 4899999999999987521
Q ss_pred ---eeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 611 ---QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 611 ---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
+.+..+.+|. ..++.|.|+|...+|++.+..+.+++|.-.
T Consensus 345 ~i~~~~~VLrGHR--Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLRGHR--SVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEeccc--ccccceeecCCcceEeccchhhheeccccc
Confidence 1123444444 357899999999999999999999999754
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=175.60 Aligned_cols=302 Identities=16% Similarity=0.224 Sum_probs=235.5
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+...|.+|.+.|..|.|...|. +|++|+.|..|.+||+..+..+..+ ..||...|..-.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKF 193 (559)
T ss_pred hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhc
Confidence 45667899999999999999998 7899999999999999998876531 5679889988889
Q ss_pred CC--CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-
Q 001367 405 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1091)
Q Consensus 405 sp--dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~- 481 (1091)
-| +.+-+++++.||.|++=.+...........+..|.++|..++.-|+..+ .|.+++.|+.+.-.|+.++.....+
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence 88 5678999999999999887655545545567789999999999999887 7999999999999999887654433
Q ss_pred --cCCCc---ceEEEeecccCCceEEEEEecCCeEEEEecCCCCce------eee------cCCCCcEEEEEEcCCCCEE
Q 001367 482 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL 544 (1091)
Q Consensus 482 --~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~------~~~~~~i~~~~~s~d~~~l 544 (1091)
..+.. ..++++..|.+ ...+++++.|..+++||.+..... ..+ ......|++++|+.++.-|
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeccCCccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 22333 45677776653 358999999999999997653322 111 1223368999999877666
Q ss_pred EEEecCCCCceEEEEEecCC--c----------eee-EEEecccccccceEEEE-EcCCCCEEEEEeCCCeEEEEECCCC
Q 001367 545 FSCGTSKEGESFLVEWNESE--G----------AIK-RTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~--~----------~~~-~~~~~~~~~~~~v~~v~-~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1091)
++... +..|+++.... | ..+ +.+++|... ..|..+- |.|...++++|+.-|.|.||+-.++
T Consensus 352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence 66654 44588885432 2 222 337787732 3466665 5788999999999999999999999
Q ss_pred eeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
+.+..+.+..+ -|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99998887766 6899999999999999999999999987544
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=163.88 Aligned_cols=238 Identities=14% Similarity=0.182 Sum_probs=178.8
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC-
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD- 407 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 407 (1091)
...||+++|..++|.|-....+|+||.|.+|.||++..+.+..... -+...+.||...|.-++|+|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~wHPtA 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQWHPTA 143 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEeecccc
Confidence 3579999999999999777789999999999999998776554321 123348899999999999995
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
.+.|++++.|.+|.+||+.+|+.+- ++. |...|.++.|+.||. +++|.+.|..|+|||..+++.+..-.+|.+.
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 5788999999999999999998655 444 999999999999999 8999999999999999999999988888764
Q ss_pred eE-EEeecccCCceEEEEEe---cCCeEEEEecCCCCceeeec--CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 488 VY-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 488 v~-~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
-. .+.| -.++.++.+|. .+..+-+||..+.+....+. .....|.--.|.+|...+..++ .||+.|+.|.
T Consensus 218 k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G---KGD~~IRYyE 292 (472)
T KOG0303|consen 218 KPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG---KGDSSIRYFE 292 (472)
T ss_pred CcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe---cCCcceEEEE
Confidence 22 2233 34555444432 45679999987766544222 2344566667889999999887 4688899999
Q ss_pred cCCceeeE-EEecccccccceEEEEEcCCC
Q 001367 562 ESEGAIKR-TYQGLQLQHNSVSVVHFDTAK 590 (1091)
Q Consensus 562 ~~~~~~~~-~~~~~~~~~~~v~~v~~~~~~ 590 (1091)
+....+.. -+.... ...+-..+.|-|..
T Consensus 293 it~d~P~~hyln~f~-S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 293 ITNEPPFVHYLNTFS-SKEPQRGMGFMPKR 321 (472)
T ss_pred ecCCCceeEEecccc-cCCccccccccccc
Confidence 87765322 221111 12345566666643
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=158.20 Aligned_cols=293 Identities=17% Similarity=0.196 Sum_probs=200.2
Q ss_pred chheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeec-CCCccEEE
Q 001367 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR 401 (1091)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~ 401 (1091)
|......|++|.+.|+++.|-.+++ |.+|...|.|++|++++.+.+.. +. .|...|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~ 61 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN 61 (323)
T ss_pred CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence 3445567889999999999999996 58899999999999998875532 33 46788999
Q ss_pred EEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC-----CCce--EEEEeeCCC-cEEEEeCC
Q 001367 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-----CKQI--SVITCGDDK-TIKVWDAV 473 (1091)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-----~~~~--~l~s~~~d~-~i~iwd~~ 473 (1091)
+.--|+ ..|.+-+.|+.+.+|++..+..+ ..|.-.++++-|.+- ++.. .++.-+... .+.+-|..
T Consensus 62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC
Confidence 999998 56778889999999999876432 245555666666542 1110 111111110 01111211
Q ss_pred CCceeEEe----cCCCcceEEEeeccc-CCceEEEEEecCCeEEEEecCCCCcee----------eecCCCCcEEEEEEc
Q 001367 474 TGSRTYSF----EGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLGCTRMAYS 538 (1091)
Q Consensus 474 ~~~~~~~~----~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~i~~~~~s 538 (1091)
....++.. .+..+.+.+..+... ...-++++|.++|.+.+||+.++.... ....+..++.++.+.
T Consensus 135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya 214 (323)
T KOG0322|consen 135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA 214 (323)
T ss_pred ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec
Confidence 11111111 122344555543222 122357788899999999999874333 344567789999988
Q ss_pred CCCCEEEEEecCCCCceEEEEEecCC--cee-eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNESE--GAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1091)
+.-..=++++. ...+..|+++. +.+ ++..... .+..+..+..-||++.+++++.|+.||||+.++..++..
T Consensus 215 s~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV 288 (323)
T KOG0322|consen 215 SSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV 288 (323)
T ss_pred hhhcCCcCCCc----cccceeeeeccccCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh
Confidence 75544445443 33466776653 222 1111111 135688889999999999999999999999999999999
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
+..|.. .|++++|+|+..++|.++.|++|.+|++
T Consensus 289 LkyHsa--gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 LKYHSA--GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhc--ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 988864 7999999999999999999999999986
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=156.79 Aligned_cols=304 Identities=15% Similarity=0.178 Sum_probs=202.0
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
...+.+|. ..++++.|..++ ++++|..-|.|.+|++.+.+....+...+. ..|..+..-|+ ..+.+-+.|..+.
T Consensus 7 ~fvLRp~~---~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHS---SSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred eeEecccc---chheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEE
Confidence 34455666 889999998765 499999999999999999988888875544 35677777776 5688889999999
Q ss_pred EEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCC----CcccccccccccccccccccCCcccc
Q 001367 648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDV----KPEISVEAENKSEVEKPLFARPSECQ 723 (1091)
Q Consensus 648 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~----~~l~s~~~d~~i~~w~~~~~~~~~~~ 723 (1091)
+|++..+..+. .|.-.++++-|++..- .+.+ ..++.-+. +.-.+-..+.+...+.+
T Consensus 81 lw~ia~s~~i~---i~Si~~nslgFCrfSl----------------~~~~k~~eqll~yp~r-gsde~h~~D~g~~tqv~ 140 (323)
T KOG0322|consen 81 LWTIAYSAFIS---IHSIVVNSLGFCRFSL----------------VKKPKNSEQLLEYPSR-GSDETHKQDGGDTTQVQ 140 (323)
T ss_pred EEEccCcceEE---Eeeeecccccccccee----------------ccCCCcchhheecCCc-ccchhhhhccCccceeE
Confidence 99998754332 2223344444443221 1111 11222111 11111112222233333
Q ss_pred eeecCCccccccEEEEEEe-cCCC--eEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCC
Q 001367 724 SLLLPSKVKANKISRLTYN-NGGQ--AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 800 (1091)
Q Consensus 724 ~~~~~~~~~~~~i~~~~~s-~dg~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1091)
...-+.....+.+.+..+. .++. .++++-++|.+.+||+........ -+..|... .....|
T Consensus 141 i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~-------~~~~~kv~---------~~~ash 204 (323)
T KOG0322|consen 141 IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ-------LPQSSKVE---------SPNASH 204 (323)
T ss_pred ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec-------cccccccc---------cchhhc
Confidence 3333334455666666532 2233 346666789999999876522111 01112111 122348
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEEccC--ceeE--EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 801 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
..+|.++.+.+.-..=++++ +..+..|.++. +.+. .++......|..+.+-| |++.+|+++.|+.|+||+.++.
T Consensus 205 ~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 205 KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccC
Confidence 89999999987655555555 56788887763 3322 22333455788899999 9999999999999999999999
Q ss_pred ceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q 001367 876 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 914 (1091)
Q Consensus 876 ~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~ 914 (1091)
.++..++-|.+.|.+++|+||...+|.+|.|+.|.+|++
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999986
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-16 Score=159.80 Aligned_cols=498 Identities=12% Similarity=0.164 Sum_probs=286.6
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE--CCCCC
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--SPDGS 409 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--spdg~ 409 (1091)
.|+..|.|+.|+.+.. ++.++ .|..+.+|+-.+........++ ...++. ..| +....- -....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~~~p-------~df~pt---~~h---~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVAKLP-------DDFVPT---DMH---LGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhhhhCC-------cccCCc---ccc---ccccccCCCCCcc
Confidence 5677888999999987 55554 4555555554333322211100 000000 001 000000 01235
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
.++.++.||.+.|-+-.. +.-+ .+..|.+.|.+-.|+|||. -|+++|.||.|++|. ++|-...++.....+|+
T Consensus 77 ~~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR 149 (737)
T ss_pred eEEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence 788888999888876443 2222 4678999999999999999 799999999999999 88877777777788999
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
|++|.|+.+ ..+++.+ +.+.|=-+........++.|.+-|.++.|++.++.+++++. |....+||.. |..+.
T Consensus 150 c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf 221 (737)
T KOG1524|consen 150 CARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLF 221 (737)
T ss_pred EEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Ccccc
Confidence 999977654 3444433 45666666777778889999999999999999999999986 7779999965 44444
Q ss_pred EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEE
Q 001367 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1091)
Q Consensus 570 ~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1091)
.-..|. .+|++++|+|+ +.++.++. .+++ +.. .....|..++||+||..+++|+..|.+.+=
T Consensus 222 ~S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 222 TSAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cCChhc---cceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 445555 89999999999 55555553 2333 111 112468899999999999999999987653
Q ss_pred ECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCC
Q 001367 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 729 (1091)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~ 729 (1091)
-+-..+... +..-++......|.+-|+.. ..+..+.++
T Consensus 284 ~~ieq~l~~--------------------------------------~n~~~t~~~r~~I~vrdV~~---~v~d~LE~p- 321 (737)
T KOG1524|consen 284 YAIEQQLVS--------------------------------------GNLKATSKSRKSITVRDVAT---GVQDILEFP- 321 (737)
T ss_pred eeehhhhhh--------------------------------------ccceeEeeccceEEeehhhh---hHHHHhhCc-
Confidence 322211110 00011111112222222221 111222222
Q ss_pred ccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEe
Q 001367 730 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 809 (1091)
Q Consensus 730 ~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 809 (1091)
.++..... .-.+|+++.. ..+++|.-.. -+++.+.|.+.+. +.-+.-
T Consensus 322 ----~rv~k~sL--~Y~hLvvaTs-~qvyiys~kn-----------wntpiiidgre~t---------------r~lieq 368 (737)
T KOG1524|consen 322 ----QRVVKFSL--GYGHLVVATS-LQVYIYSEKN-----------WNTPIIIDGREDT---------------RNLIEQ 368 (737)
T ss_pred ----cceeeeee--ceeEEEEEec-cEEEEEecCC-----------ccCcEEEeccccc---------------hhHhhh
Confidence 23333332 2223444333 2455543110 0011111111111 100100
Q ss_pred cCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCC-----eEEEEEcCCCCcEEEEE--eCCCeEEEEec-cCcceee--
Q 001367 810 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVIS-- 879 (1091)
Q Consensus 810 s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~~~~~la~g--~~dg~i~iwd~-~~~~~~~-- 879 (1091)
..+++......++.+|..+ |+.....+.+... -..+...- ..|+.- .....+.+||. .+|+...
T Consensus 369 --~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLan---dtLaird~ad~kvlhlFd~istgk~qgDg 442 (737)
T KOG1524|consen 369 --GEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLAN---DTLAIRDNADPKVLHLFDLISTGKRQGDG 442 (737)
T ss_pred --hhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeeccc---ceEEeecCCCCeeEEeccCCCCCcccCCc
Confidence 1123333334556676654 3332222222211 12233332 244442 23347888998 6776542
Q ss_pred eeccccCCeEEEEEC----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEec
Q 001367 880 KLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 955 (1091)
Q Consensus 880 ~l~~h~~~V~~l~~s----pdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d 955 (1091)
.+-.|...|..++.. ++.+.++.-...+.++|=.+++-... .+.++. ...+..++|+...+.|.--.|
T Consensus 443 k~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke-e~I~Ki-------GTmVhtLawndttNiLcglqD 514 (737)
T KOG1524|consen 443 KSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE-EEIYKI-------GTMVHTLAWNDTTNILCGLQD 514 (737)
T ss_pred cccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch-hhhhhh-------hhhhhhhhhccccceeeeecc
Confidence 223366777777764 45577888888888888777652211 111111 125788999999888887899
Q ss_pred CeEEEEEcCCc
Q 001367 956 THLAIYEAEEL 966 (1091)
Q Consensus 956 ~~i~vwd~~~~ 966 (1091)
+.+.||-..+.
T Consensus 515 t~fsVWy~pn~ 525 (737)
T KOG1524|consen 515 TCFSVWYYPNE 525 (737)
T ss_pred ceEEEEEcCCc
Confidence 99999987643
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-18 Score=193.27 Aligned_cols=251 Identities=14% Similarity=0.153 Sum_probs=197.1
Q ss_pred CcEEEEEcCCCce---EEEEEcCCCcEEEEEcCCC---CceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 336 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 336 ~V~~v~fspdg~~---llasg~~dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
.-..++|.+.|.. ++|.|..||.|.+||...- .... -......|++.|..+.|++.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------VLATKSKHTGPVLGLDFNPFQG 129 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------HHhhhcccCCceeeeeccccCC
Confidence 6778999888876 6899999999999998652 1111 0111557999999999999655
Q ss_pred -EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc--
Q 001367 410 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-- 486 (1091)
Q Consensus 410 -~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-- 486 (1091)
+||+|+.||.|.|||+..-+...... -......|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..+..
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998744322110 1124567999999987665 799999999999999999988877766654
Q ss_pred ceEEEeecccCCceEEEEEecCC--eEEEEecCCCC-ceeeecCCCCcEEEEEEcCCC-CEEEEEecCCCCceEEEEEec
Q 001367 487 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
.+..+.|+|+...+++++...|+ .|.+||++... ...++..|...|.++.|++.+ ++|++++. |+.|.+|+.
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~ 283 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP 283 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence 46788999886655555544444 49999988655 445678999999999999976 77788775 667999999
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 611 (1091)
++++.+..+.... +.+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999988755 8999999999887 66668999999999987654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-16 Score=151.68 Aligned_cols=335 Identities=14% Similarity=0.206 Sum_probs=221.7
Q ss_pred EEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeE
Q 001367 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 613 (1091)
Q Consensus 535 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~ 613 (1091)
.+|||+|++++++. +..+.+-|..+-+..+.+... +.|..+.|..|.-++++ ...++.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 57999999999997 446888888877766655543 36778899999888877 568889999999988887
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEE-ECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCC
Q 001367 614 TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNED 692 (1091)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~ 692 (1091)
..+.... ..+..++|||||+.+... .-+-.|.+|.+.+.+... ++-....+..++|+|+++..++.......
T Consensus 85 ckIdeg~--agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCk---- 157 (447)
T KOG4497|consen 85 CKIDEGQ--AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCK---- 157 (447)
T ss_pred EEeccCC--CcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHH----
Confidence 7776543 368899999999766555 458899999998775443 33334455777886655554433221100
Q ss_pred CCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC--ceEEEeecCCcccccc
Q 001367 693 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLS 770 (1091)
Q Consensus 693 ~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d--g~i~vw~~~~~~~~~~ 770 (1091)
-.+.-. .-+-|.+-. .-....-..+.+.|+|||..+++-..- -.+..|.
T Consensus 158 ------dyv~i~---~c~~W~ll~-----------~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe--------- 208 (447)
T KOG4497|consen 158 ------DYVQIS---SCKAWILLK-----------EFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE--------- 208 (447)
T ss_pred ------HHHHHH---hhHHHHHHH-----------hcCCCcccccCceECCCCcEEEEecchhhheeeeee---------
Confidence 000000 001121110 001123345678888888866543321 1111111
Q ss_pred cceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEE-------------
Q 001367 771 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTIL------------- 836 (1091)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~------------- 836 (1091)
-.-.+..++++|.++++++|+ |+.+|+.+--+.+...
T Consensus 209 -----------------------------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~ 259 (447)
T KOG4497|consen 209 -----------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTL 259 (447)
T ss_pred -----------------------------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchh
Confidence 234677788888888888887 7777765533222111
Q ss_pred -----------------------------------------------Ee------cCCCCCeEEEEEcCCCCcEEEEEeC
Q 001367 837 -----------------------------------------------TI------MPPSPTATSLAFNPHDNNVIAIGMD 863 (1091)
Q Consensus 837 -----------------------------------------------~~------~~~~~~i~~l~~s~~~~~~la~g~~ 863 (1091)
.+ ..+...+.-++|++ |..++|+-.+
T Consensus 260 ~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd 338 (447)
T KOG4497|consen 260 HLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRND 338 (447)
T ss_pred hhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecC
Confidence 11 12233567789999 8888887653
Q ss_pred C--CeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEE
Q 001367 864 D--STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 941 (1091)
Q Consensus 864 d--g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 941 (1091)
. +.+.+||++..+....+. ...+|.+..|.|....|+.+.....+++|.... ..++..+.... .|..+
T Consensus 339 ~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg-----~~~V~vP~~GF----~i~~l 408 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-----PRVVGVPKKGF----NIQKL 408 (447)
T ss_pred CCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC-----ceEEecCCCCc----eeeeE
Confidence 3 589999999877666555 556899999999999999888888899999887 34454444333 48999
Q ss_pred EEcCCCCEEEEEe
Q 001367 942 QFHKDQTRFLLVH 954 (1091)
Q Consensus 942 ~fs~dg~~la~~~ 954 (1091)
.|.-+|..++...
T Consensus 409 ~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 409 QWLQPGEFIVLCG 421 (447)
T ss_pred EecCCCcEEEEEc
Confidence 9999999988743
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-15 Score=142.30 Aligned_cols=288 Identities=12% Similarity=0.145 Sum_probs=196.4
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.|.+-+++|.+++++++..+|.|.+..+..-.. +.+. ..|+..+ .++.+|+.++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~----------~~gk~~i---v~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAE----------PPGKLKI---VPEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccC----------CCCCcce---eeccccCCCeeeeeee--hh
Confidence 455668899999999999999999998764321 0100 0111111 1224699999999997 56
Q ss_pred EEEEEeCCeEEEEEccCcee------EEEec-------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee
Q 001367 815 YLFSASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l 881 (1091)
+|.+++||.|+-|....... +.+.. .....|.++-..|..+.++. ++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEE
Confidence 78888899999998653221 11111 12347899999995555555 558999999999999999999
Q ss_pred ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCc--CCCCCceEEEEcCCCCEEEEEecCeEE
Q 001367 882 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKDQTRFLLVHETHLA 959 (1091)
Q Consensus 882 ~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~fs~dg~~la~~~d~~i~ 959 (1091)
+||++.|.+++--.....+.||++||++++||.++++.....-........ ....+|. +..-+..+|++|....+.
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGgGp~ls 230 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGGGPKLS 230 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE--EEeccCceEEecCCCcee
Confidence 999999999998555567889999999999999997654321111111111 1112333 444566799999889999
Q ss_pred EEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCC
Q 001367 960 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1039 (1091)
Q Consensus 960 vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p 1039 (1091)
+|.+++.++...+.. ..+|..+.|-.| .+++++....|.-|.+.. .+...+. .. ....++.+..-+|
T Consensus 231 lwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G-vl~a~ip------~~--s~~c~s~s~~~~p 297 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG-VLQANIP------VE--STACYSASWQTSP 297 (325)
T ss_pred EEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeecc-EEEEecc------CC--ccceeeecccCCc
Confidence 999999988877543 567888888765 677788888999998753 3332221 11 1223334445566
Q ss_pred CCCCeEEEEecCCcEEEEe
Q 001367 1040 LKPTQFAVGLTNGEVYVIE 1058 (1091)
Q Consensus 1040 ~d~~~l~~g~~dg~v~~w~ 1058 (1091)
=+++-.++-.+.++++.
T Consensus 298 --~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 298 --IKFISIAGFSNKLHILK 314 (325)
T ss_pred --eEEEEecccceeeeeee
Confidence 25677777777787753
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=173.28 Aligned_cols=262 Identities=15% Similarity=0.199 Sum_probs=196.4
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEee-----CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
.+..|...|+.++|.|-...|++++.||++.+|+++ ....+.++.++++|.++|.|++.+++++ .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 367799999999999999999999999999999993 2334677889999999999999999999 899999999
Q ss_pred cEEEEeCCC------C----ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC--CcEE
Q 001367 466 TIKVWDAVT------G----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCT 533 (1091)
Q Consensus 466 ~i~iwd~~~------~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~ 533 (1091)
+|+.|++.. . .....+.||.+.|+.++++..++ .|++++.||+++.|+...... ..+.... +--.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999996541 1 23456789999999999987664 699999999999998766554 2222221 1223
Q ss_pred EEEEcCCC-CEEEEEecCCCCceEEEEEecCCceeeEEEecccc----cccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001367 534 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 534 ~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1091)
++.+.... ...++... .+.-.+.+...+..+..+..... ....+..+.++|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443322 12222211 22233444444444444432221 12457778899999999999999999999999
Q ss_pred CCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccc
Q 001367 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1091)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 663 (1091)
+++++.....+.. .+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 520 ~~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 520 TGKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccccchheeeccc--eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 9999988876643 6899999999999999999999999999877666554433
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=157.35 Aligned_cols=295 Identities=11% Similarity=0.073 Sum_probs=211.8
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCc---ccceeEEEe--ccccCeeEEEEcCCCCceEEEEeeCCC
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
-+.+|.+.|.++.||.++++||+|+.|..+++|++...- ..+.+ .+. .|...|.|++|...++ .+++|+.++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~ 127 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLENR--FLYSGERWG 127 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCCe--eEecCCCcc
Confidence 377899999999999999999999999999999986421 11222 122 3557999999998887 899999999
Q ss_pred cEEEEeCCCCceeEEecC--CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCC---ceeeecCCCCcEEEEEEcCC
Q 001367 466 TIKVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN 540 (1091)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~d 540 (1091)
+|...|+++.+.+..+.. ..+.|+.+..+|. ...+++.+.+|.|.+||.+... ..+...........+.|+|.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999999998887742 2358999988776 3589999999999999998655 23334445557788999998
Q ss_pred CCEEEEEecCCCCceEEEEEecCCcee-eEE---EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeE-EE
Q 001367 541 GRRLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL-TT 615 (1091)
Q Consensus 541 ~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~---~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~ 615 (1091)
...|+....+.. -+-+||.+.... +.. +.+.......-.++.|+|+|+.+++.-....-..||+.+.++. ..
T Consensus 206 ~P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 206 TPALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred CceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 776665544333 378999875432 211 1222211123456789999999998766666677887764433 22
Q ss_pred EeCCC----CCCCCceEEEccCCCEEEEEECCCeEEEEECCCC-----------------------Ceecccccccccce
Q 001367 616 IDAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLR 668 (1091)
Q Consensus 616 ~~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~v~ 668 (1091)
+.... ....+.+++|..|- .+++|+++-.|++|.+... ..+..+++|..-++
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~N 361 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPN 361 (609)
T ss_pred ccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccc
Confidence 22111 12346677887654 4999999999999998732 12344556666666
Q ss_pred eeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 669 KLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 669 ~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
.+.| ++....+++.+-.+.+++|.-.
T Consensus 362 QVRF---------------------~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 362 QVRF---------------------SQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceee---------------------cCCcceEeccchhhheeccccc
Confidence 6666 7778888999999999999843
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=141.71 Aligned_cols=281 Identities=16% Similarity=0.204 Sum_probs=193.2
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
.|.+-++||.++ +|+.|..+|+|.+..+.+-..-.. ......+.....+|.++|..++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 677778999998 679999999999999854211000 000011112246899999999999 55677765
Q ss_pred CCCEEEEEEeeCCcc---cceeEE--Eeccc-----cCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC
Q 001367 416 SKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~---~~~~~~--~~~h~-----~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
||.|+=|.+..... .+.+.+ ...|. -.|+++...|... -++.++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998864322 111111 11233 2588899998777 46666689999999999999999999999
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC----------CcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG----------LGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
.-|.++... +....+++|+.||++++||.++.+....+.... ..|.++ .-+..++++++. .
T Consensus 157 DYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgG-----p 227 (325)
T KOG0649|consen 157 DYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGG-----P 227 (325)
T ss_pred ceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecCC-----C
Confidence 999999863 233479999999999999999988877554322 234444 456678888764 3
Q ss_pred EEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC-C
Q 001367 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-G 634 (1091)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~ 634 (1091)
.+.+|++++.++...+.-. ..+..+.|.. +.++++++.+.|.-|.+. |.+....+.... ......++.. -
T Consensus 228 ~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPI 298 (325)
T ss_pred ceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCce
Confidence 4999999999988888753 4777788854 578888888889999874 444444443322 3344444432 2
Q ss_pred CEEEEEECCCeEEEE
Q 001367 635 TLLAVIANENRIKIL 649 (1091)
Q Consensus 635 ~~l~~~~~dg~i~iw 649 (1091)
+.+-.++....+.|+
T Consensus 299 k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 299 KFISIAGFSNKLHIL 313 (325)
T ss_pred EEEEecccceeeeee
Confidence 345555555666655
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.3e-17 Score=169.51 Aligned_cols=270 Identities=14% Similarity=0.203 Sum_probs=192.6
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
...+|..|.+.|++++|.|-.. .+++++.||++++|+++....-.... ..+.-.+.+|.++|.|++++
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~-----------~epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKD-----------VEPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccc-----------eeeeEEEecccCceEEEEec
Confidence 4458889999999999999987 67999999999999994421111111 11222388999999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcc-------cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
+++..+.+|+.||+|+.|++..... ......+.||.+.|+.+++|+... .|++++.||+++.|+......
T Consensus 354 ~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~- 430 (577)
T KOG0642|consen 354 SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP- 430 (577)
T ss_pred CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-
Confidence 9999999999999999996652211 112235779999999999999887 699999999999999766555
Q ss_pred EEecCCCc--ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC-------CCcEEEEEEcCCCCEEEEEec
Q 001367 479 YSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 479 ~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
.+|..... --.++.+..+. -...++...-+.--+.+++.......+... ...+..+...|.+...+++..
T Consensus 431 ~~f~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 431 CTFGEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred cccCCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence 44432222 22333332111 012222222233333344433333332221 124567778888888888765
Q ss_pred CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
++.|+++|..++.++.....|. ..++++++.|+|.+|++++.|+.+++|.+....++.....
T Consensus 510 ----d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 510 ----DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred ----CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 6679999999999999888877 8999999999999999999999999999987666655443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-14 Score=159.04 Aligned_cols=198 Identities=12% Similarity=0.138 Sum_probs=124.8
Q ss_pred eEEEecCCCCEEEEEe--CCeEEEEEccC-ce---eEEEecCCCCCeEEEEEcCCCCcEEE-EEeCCCeEEEEeccCcce
Q 001367 805 PCFALSKNDAYLFSAS--GGVISLYIVMT-FK---TILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV 877 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~---~~~~~~~~~~~i~~l~~s~~~~~~la-~g~~dg~i~iwd~~~~~~ 877 (1091)
..++++|+++++++++ ++.|.+|++.+ +. .+..+. +......++++| ++++++ +...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 3455666666665554 46666666642 21 122222 223467789999 676664 555679999999986332
Q ss_pred ee-------eeccccCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC--CceeeeeeeeccCCCcCCCCCceEEEEcCCC
Q 001367 878 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 947 (1091)
Q Consensus 878 ~~-------~l~~h~~~V~~l~~spdg~~las~s~-Dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg 947 (1091)
+. .... ......++|+|||++++++.. +++|.+|+++. ++......+...............+.|+|||
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 1111 234678999999999988776 89999999974 3322212222111111111123468999999
Q ss_pred CEEEEE--ecCeEEEEEcCCcce----eeeeecCCccCEEEEEEeeCCCEEEEEEc-CCcEEEEeCC
Q 001367 948 TRFLLV--HETHLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS 1007 (1091)
Q Consensus 948 ~~la~~--~d~~i~vwd~~~~~~----~~~~~~~h~~~v~~v~fs~dg~~l~t~~~-dg~v~iwd~~ 1007 (1091)
++|+++ .++.|.+|++..... +..... ......+.|+|||++|+++.. +++|.+|+++
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999986 457899999864332 222221 124557899999999998775 8999999875
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-14 Score=144.38 Aligned_cols=243 Identities=11% Similarity=0.139 Sum_probs=186.2
Q ss_pred CccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
...+..+.|+.|...|..|+.|| -++|+...-.... ........|.-+-|+..=- .+++...-..+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSLv--aiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSLV--AIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccccee--EEEecCCCceEEEEEcccC
Confidence 34677778999999999999999 6888876543211 1112233566667765321 3333333345999999888
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC---CCcEEEEEEcCCCCEEEEEecCCC
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
..+..+. ...+|.++.+.. +.|+++-.+. |+|||+++.+.+.++... ...+.++++++.+.+++.-+..
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-- 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-- 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC--
Confidence 8887764 556788888732 3555555444 999999999888866543 3356666777777788876542
Q ss_pred CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
..|.|.+||..+-+.+..+..|. +.+.+++|+++|..++++|+.|+ |||+.+.+|+.+..+.-......|.+++|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred CCceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 25669999999999999999888 99999999999999999999997 799999999999999877666678999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCC
Q 001367 632 KNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
|++++|++.++.++|++|.+....
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCCCeEEEecCCCeEEEEEecccc
Confidence 999999999999999999988553
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-16 Score=148.47 Aligned_cols=258 Identities=17% Similarity=0.223 Sum_probs=185.3
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCC-------CcEEEEEcCCCCceeeeceeEEecccccccee--eeeecCCCcc
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK--TALVRDPGVS 398 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~d-------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~ 398 (1091)
.+|..|.++||.++-+|-.+++|++...+ -.+.||.+........ ..++. ..+-..+-+.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~-----------~~tlE~v~~Ldteavg~ 125 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN-----------SSTLECVASLDTEAVGK 125 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc-----------cchhhHhhcCCHHHhCc
Confidence 45677889999999999988899987653 2367887754322100 00000 0111245569
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEE---EeccccCeeEEEEcC--CCCceEEEEeeCCCcEEEEeCC
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAV 473 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~ 473 (1091)
|.|+.|.|++..||+-. |..|.+|++..+..+..... -.+|....++-+|+| ||. .+++.+ |+++..||++
T Consensus 126 i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~R 201 (370)
T KOG1007|consen 126 INCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLR 201 (370)
T ss_pred eeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEcc
Confidence 99999999999999876 77899999998765321111 113566788899998 666 455554 8899999999
Q ss_pred CCceeEEe-cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCC-ceeeecCCCCcEEEEEEcCCCCEEE-EEecC
Q 001367 474 TGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLF-SCGTS 550 (1091)
Q Consensus 474 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~-~~~~~ 550 (1091)
+.++...+ ..|...|..+.|.|+. ..+|++++.||.|++||.+..+ ....+..|...+.++.|+|....|+ +++.
T Consensus 202 T~~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S- 279 (370)
T KOG1007|consen 202 TMKKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS- 279 (370)
T ss_pred chhhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC-
Confidence 98887766 5688899999997764 4689999999999999998755 4568889999999999999765554 4443
Q ss_pred CCCceEEEEEecCCce-----------------------------eeEEEecccccccceEEEEEcCCCCEEEE-EeCCC
Q 001367 551 KEGESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH 600 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg 600 (1091)
+..|.+|...+-. .+.++..| ...|.+++|+.-..++++ -+.||
T Consensus 280 ---Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh---EDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 280 ---DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH---EDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred ---CceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc---ccceEEEeeccCCCeeEEEeccCc
Confidence 5567777543211 12233344 489999999988888765 78999
Q ss_pred eEEEEECC
Q 001367 601 VIKIWDMN 608 (1091)
Q Consensus 601 ~i~iwd~~ 608 (1091)
.+.|=.+.
T Consensus 354 RviIs~V~ 361 (370)
T KOG1007|consen 354 RVIISSVP 361 (370)
T ss_pred eEEeecCC
Confidence 98876554
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=146.01 Aligned_cols=289 Identities=18% Similarity=0.262 Sum_probs=205.6
Q ss_pred eeecccCCCCcEEEEEc--CCCceEEEEEcC----CCcEEEEEc--CCCCceeeeceeEEeccccccceeeeeecCCCcc
Q 001367 327 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fs--pdg~~llasg~~----dg~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 398 (1091)
+.++..+- .+.++.|| |+.+..||.|+. .+.|.|-.+ .+++.+..-+ ..|.-+
T Consensus 38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 45555555 88899998 566667899985 245555444 4454443211 258899
Q ss_pred EEEEEECCCC-----CEEEEEECCCEEEEEEeeCCcc-cceeE-----EEeccccCeeEEEEcCCCCceEEEEeeCCCcE
Q 001367 399 VNRVVWSPDG-----SLLGVAYSKHIVQLYAYHGGSD-ARQQL-----EIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 399 V~~l~~spdg-----~~las~~~d~~i~iwd~~~~~~-~~~~~-----~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1091)
++.+.|.|+. ++||+++ ..+++|.+...+. +.... +-..+..++++..|+.-... ++.+++-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 9999999987 3666653 3599999984221 11111 12246679999999875554 89999999999
Q ss_pred EEEeCCCCc---eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-eecCC--CCcEEEEEEcCC-
Q 001367 468 KVWDAVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSAN- 540 (1091)
Q Consensus 468 ~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~--~~~i~~~~~s~d- 540 (1091)
.|||+++|. ....+-.|...|..++|.. +....+++.+.||.+|++|++..+--. .+... ..+...++|++.
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 999999873 3456778999999999975 344789999999999999998765433 23322 457888899884
Q ss_pred CCEEEEEecCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCee------
Q 001367 541 GRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------ 612 (1091)
Q Consensus 541 ~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~------ 612 (1091)
-+++++...+ ...|.+.|++.. ..+..+++|. ..|+.++|.|.. .++.+++.|..+.+||+...-.
T Consensus 255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 4566665542 445899999864 5678888888 999999999975 5778899999999999976322
Q ss_pred EEEEeCCCCCCCCceEEEcc-CCCEEEEEECCCeEEE
Q 001367 613 LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKI 648 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 648 (1091)
+.... ...+|+.+.|++ .+..++++.. +++.+
T Consensus 329 ilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 329 ILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 11222 224689999996 5667777765 44444
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-17 Score=178.83 Aligned_cols=288 Identities=14% Similarity=0.229 Sum_probs=225.9
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCe
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1091)
+.++.+.+|. +.|.|+.|...|.++++|+.|..++||.++++.++....+|.+ .++.++.+.+..++++++.|..
T Consensus 181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence 3445566766 8999999999999999999999999999999999999988866 7999999999999999999999
Q ss_pred EEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCccccee
Q 001367 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 725 (1091)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 725 (1091)
|++|.+..+.++..+.+|++.|++++|+|. .+.+.||++++||...... ...
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~-------------------------~sss~dgt~~~wd~r~~~~---~y~ 307 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-------------------------ASSSDDGTCRIWDARLEPR---IYV 307 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCcc-------------------------ccCCCCCceEecccccccc---ccC
Confidence 999999999999999999999999999763 2667789999999762110 000
Q ss_pred ecC-CccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCe
Q 001367 726 LLP-SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 804 (1091)
Q Consensus 726 ~~~-~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 804 (1091)
..| ......-+.++.|...+..+++++.++....|.+.... | +...+
T Consensus 308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~-----------------~~~~l 355 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W-----------------RSNLL 355 (1113)
T ss_pred CCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------------h-----------------hccce
Confidence 011 11234567788888899999999999888887754211 1 12222
Q ss_pred eEEEecCCCC-EEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec
Q 001367 805 PCFALSKNDA-YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 882 (1091)
Q Consensus 805 ~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 882 (1091)
.-+..+.|-. +.+++- +..+.+|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+..|.+++...
T Consensus 356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 2222222322 333333 67799999999999999999999999999999888888899999999999999988775543
Q ss_pred cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001367 883 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 918 (1091)
Q Consensus 883 ~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~ 918 (1091)
...+.+...+||+||+.++....-|.+.|.....++
T Consensus 436 ~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 436 IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 334567778999999999988888999998765543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-16 Score=160.36 Aligned_cols=176 Identities=20% Similarity=0.237 Sum_probs=133.7
Q ss_pred EEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-cCCCcceEEEeecccCCceEEEEEecCCeEEEE
Q 001367 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514 (1091)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 514 (1091)
++.||++.|++++|+.||. +|++|+.|-.+.|||.-..++++.+ .+|...|.++.|.|..+..++++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 6889999999999999999 8999999999999999988888877 689999999999999999999999999999999
Q ss_pred ecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCC-CEE
Q 001367 515 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQI 593 (1091)
Q Consensus 515 d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l 593 (1091)
|+...+....-. + ..+..+.+..|. ..|..++-.|++ ..+
T Consensus 123 dl~~~~~~~~d~--~----------------------------------~~~~~~~~~cht---~rVKria~~p~~Phtf 163 (758)
T KOG1310|consen 123 DLDSSKEGGMDH--G----------------------------------MEETTRCWSCHT---DRVKRIATAPNGPHTF 163 (758)
T ss_pred eccccccccccc--C----------------------------------ccchhhhhhhhh---hhhhheecCCCCCceE
Confidence 987533211100 0 011112223333 677778888888 677
Q ss_pred EEEeCCCeEEEEECCCCeeEE--------EEeCCCCCCCCceEEEcc-CCCEEEEEECCCeEEEEECC
Q 001367 594 LAAGDDHVIKIWDMNKVQLLT--------TIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~--------~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.++++||+|+-+|++....-. ............++..+| +..+|++|+.|--.++||..
T Consensus 164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 889999999999997632110 001111122457889999 55789999999999999953
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-15 Score=145.03 Aligned_cols=184 Identities=17% Similarity=0.233 Sum_probs=130.2
Q ss_pred CeeEEEecC--CCCEEEEEeCCeEEEEEccCceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc-cee
Q 001367 803 AVPCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVI 878 (1091)
Q Consensus 803 ~v~~l~~s~--dg~~la~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~-~~~ 878 (1091)
..++-++|| ||..+++.+|++++.||+.+.++...+. .|...++.+.|.|+...+||++++||.|+|||.+.- .++
T Consensus 172 ~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred eecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc
Confidence 334445665 8899999999999999999888777665 577889999999977778999999999999999864 578
Q ss_pred eeeccccCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecC
Q 001367 879 SKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 956 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spd-g~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~ 956 (1091)
..+.+|+.-|.++.|.|. .+++.|+|.|..|.+|....-.... .+.|-.|..-.-. ....
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~------------------qi~~~~dese~e~~dsee 313 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ------------------QIEFEDDESESEDEDSEE 313 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc------------------ccccccccccCcchhhHH
Confidence 999999999999999984 4678899999999999876522111 1111111000000 0000
Q ss_pred eEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCE-EEEEEcCCcEEEEeCCC
Q 001367 957 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 957 ~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~-l~t~~~dg~v~iwd~~~ 1008 (1091)
+++ -+..|. +. .+..|...|.+++||.-..+ +|+-+.||.|.|=.++.
T Consensus 314 r~k--pL~dg~-l~-tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 314 RVK--PLQDGQ-LE-TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hcc--cccccc-cc-cccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 111 011111 11 25578999999999986654 67888999998866543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-16 Score=154.23 Aligned_cols=291 Identities=13% Similarity=0.171 Sum_probs=198.4
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee--cCCC-CcEE
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPG-LGCT 533 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~-~~i~ 533 (1091)
.++++-..|.|++||..+++.+..|+++...++.+.|........+.+++.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 577787899999999999999999999999999999976545678999999999999999987665433 3333 3566
Q ss_pred EEEEcCCCCEEEEEecCCCCceEEEEEecCCcee-eEEEe-cccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Q 001367 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 534 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~ 610 (1091)
+++..-.++.++++..-...+..+.+||++..+. ++.+. .| ...|+++.|+|.. +.|++||.||.|.+||++..
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH---~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESH---NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhc---cCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 7766667788887766555678899999998765 55543 34 4899999999975 57788999999999998764
Q ss_pred e----eEEEEeCCCCCCCCceEEEccCC-CEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccC
Q 001367 611 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1091)
Q Consensus 611 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 685 (1091)
. ++.++.. ...|..+.|..++ +.+.+.+..++..+|+++.+.....+....-..... . ...+.
T Consensus 199 ~EeDaL~~viN~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~-r----~~~~~---- 266 (376)
T KOG1188|consen 199 NEEDALLHVINH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL-R----KEDNC---- 266 (376)
T ss_pred cchhhHHHhhcc---cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH-H----hhhhh----
Confidence 2 2233322 2358889998877 468888999999999999886444333221000000 0 00000
Q ss_pred CcccCCCCCCCCCccccccc-ccccccccccccCCc-ccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeec
Q 001367 686 GSVSNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 686 g~~~~~~~s~~~~~l~s~~~-d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
..+.+.....++...+.++. -+...++-+....+. ..........+|..-|+++.|...+..+.++++||.+.+|..
T Consensus 267 dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 267 DYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 00111111222333333333 455555554321111 122223333457778889999988999999999999999985
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.1e-15 Score=145.66 Aligned_cols=241 Identities=11% Similarity=0.175 Sum_probs=183.5
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC--CeEEEEeccCccee
Q 001367 801 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD--STILIYNARSSEVI 878 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d--g~i~iwd~~~~~~~ 878 (1091)
...+..+.|..|...|..|+...-++|..+..............|..+-|+. .++|..+.+ ..++++++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456677788899999999876678888776554333333445677778876 366666554 36999999988887
Q ss_pred eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-E--ec
Q 001367 879 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 955 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~--~d 955 (1091)
+.+. ...+|.++.+.. +.|+.+=.+. |+|||+++- +.+.+.....+....+.++++++.+.+||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~M-----klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDM-----KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccc-----eeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7766 456799999864 4566555544 999999984 355555444332335777777778889998 3 56
Q ss_pred CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCc-EEEEeCCCCceEEEeecccccCCCCcccccceeE
Q 001367 956 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1034 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1034 (1091)
|.|.+||+.+.+.+..+ ..|.+.+.+++|++||.+|||+++.|+ |||+.+++|+.+..|+.... + +....
T Consensus 153 GdV~l~d~~nl~~v~~I-~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTI-NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeEE-EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEEE
Confidence 89999999998888774 589999999999999999999999997 89999999999999985443 2 22346
Q ss_pred EEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1035 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1035 ~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
++|+| |+++|++.+..++||+|.+....
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 78999 58999999999999999997654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-14 Score=156.15 Aligned_cols=275 Identities=14% Similarity=0.195 Sum_probs=178.3
Q ss_pred eEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE-CCCEEEEEEe
Q 001367 348 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 425 (1091)
Q Consensus 348 ~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~ 425 (1091)
++.++...++.|.+|++.+ |+...... + .+......++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3455557789999999964 43221111 2 1335677899999999987764 5778999999
Q ss_pred eCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCCcEEEEeCCC-Cc---eeEEecCCCcceEEEeecccCCce
Q 001367 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH 500 (1091)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~ 500 (1091)
.....+...... ...+....++|+|+++ ++++++ .++.|.+|++.+ +. .+..+.+ ......++++ ++++
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~--p~g~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANID--PDNR 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeC--CCCC
Confidence 732222221122 2233567899999999 455444 588999999874 32 2233322 2334556674 4666
Q ss_pred EE-EEEecCCeEEEEecCCCCceee-----e-cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC--ce--eeE
Q 001367 501 FI-FSISVDGKIKAWLYDSLGARVD-----Y-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR 569 (1091)
Q Consensus 501 ~l-~s~~~dg~i~iwd~~~~~~~~~-----~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~ 569 (1091)
++ ++...++.|.+||+++...... . .........++|+|+|++++++.. .++.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 66 4555679999999987432211 1 112344668999999999988753 366799999873 32 333
Q ss_pred EEecccc---cccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe----eEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 570 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 570 ~~~~~~~---~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
.+..... +......+.++|++++++++. .++.|.+|+++... .+...... .....+.++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332110 112234688999999999975 47899999985432 23333322 2356899999999999887
Q ss_pred C-CCeEEEEECC
Q 001367 642 N-ENRIKILETP 652 (1091)
Q Consensus 642 ~-dg~i~iwd~~ 652 (1091)
. +++|.+|++.
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8899999875
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=149.54 Aligned_cols=275 Identities=14% Similarity=0.163 Sum_probs=191.4
Q ss_pred EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC--CCCEEEEEECCCEEEEEEee
Q 001367 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH 426 (1091)
Q Consensus 349 llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~i~iwd~~ 426 (1091)
.+|++-..|+|++||..+|+.+.. +++|...+..++|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 567777889999999999988865 778888888999987 46788999999999999999
Q ss_pred CCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEee----CCCcEEEEeCCCCce-eEEe-cCCCcceEEEeecccCCc
Q 001367 427 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI 499 (1091)
Q Consensus 427 ~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~ 499 (1091)
+....... ...+|. .+..+++..-.++ .+++|. .|-.|.+||++..+. +..+ ..|...|++++|+|+. .
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence 87654433 344565 4666666665555 566664 367899999998766 5444 6799999999999874 4
Q ss_pred eEEEEEecCCeEEEEecCCCCce---eeecCCCCcEEEEEEcCCC-CEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 500 HFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
.+|++|+.||.|.++|+...... .....+...|.++.|..++ +.+.+.+- .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 79999999999999998765332 2333456679999999988 33444443 4458999998887654443321
Q ss_pred cc----------ccceEEEEEcCCCCEEEEE-eCCCeEEEEECC---CCe---eEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 576 LQ----------HNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN---KVQ---LLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 576 ~~----------~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
.. ..-|.+. ...+....+.+ +.-++..++-+. ++. .+..+.+ ++...|..+.|...+..+.
T Consensus 255 ~~~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLY 332 (376)
T ss_pred chhhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceee
Confidence 00 0112211 12233444443 335555555433 333 2333333 2334578889999999999
Q ss_pred EEECCCeEEEEECC
Q 001367 639 VIANENRIKILETP 652 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~ 652 (1091)
+|+.||.+.+|..+
T Consensus 333 TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCCceEEEEecC
Confidence 99999999999863
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-15 Score=164.26 Aligned_cols=302 Identities=18% Similarity=0.203 Sum_probs=207.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-CCCCceEEEcc--CCCEEEEEECCCeEEEEECCCCCe
Q 001367 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-LPENPRICFNK--NGTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 580 ~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
....+.|+|-...++++.+.-.|++||.+.++.+..+..+.. ...|..+.+-. |..++.+++.||.|+||+-.....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 456788999999999999889999999999999888765432 23466776654 556788888899999987432100
Q ss_pred ecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccE
Q 001367 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 736 (1091)
Q Consensus 657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i 736 (1091)
+...++++.. .+
T Consensus 1146 ---------------------------------------~~~eLVTaw~-----------------------------~L 1157 (1387)
T KOG1517|consen 1146 ---------------------------------------KKPELVTAWS-----------------------------SL 1157 (1387)
T ss_pred ---------------------------------------CCceeEEeec-----------------------------cc
Confidence 0001111100 00
Q ss_pred EEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC-CCCE
Q 001367 737 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAY 815 (1091)
Q Consensus 737 ~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~ 815 (1091)
.+. +.+....| .+. .|-. .|.+
T Consensus 1158 -------s~~-~~~~r~~~--~v~-----------------------------------------------dWqQ~~G~L 1180 (1387)
T KOG1517|consen 1158 -------SDQ-LPGARGTG--LVV-----------------------------------------------DWQQQSGHL 1180 (1387)
T ss_pred -------ccc-CccCCCCC--eee-----------------------------------------------ehhhhCCeE
Confidence 000 00001111 111 2222 3444
Q ss_pred EEEEeCCeEEEEEccCceeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc---ceeeeeccccCC--eE
Q 001367 816 LFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR--VT 889 (1091)
Q Consensus 816 la~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~---~~~~~l~~h~~~--V~ 889 (1091)
+++|.-..|+|||.........+.. ....++++.-+...|..+++|..||.|++||.+.. ..+...+.|++. |.
T Consensus 1181 l~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1181 LVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV 1260 (1387)
T ss_pred EecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce
Confidence 4454457899999988877776653 44567887766657899999999999999998764 356778889987 99
Q ss_pred EEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcce
Q 001367 890 GLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 968 (1091)
Q Consensus 890 ~l~~spdg~-~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~ 968 (1091)
.+.+-+.|- .|++|+.||.|++||+....... ......+..+....+++..+++...+|+|+.+.|.||++. |+.
T Consensus 1261 ~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~---~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~ 1336 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET---FLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQ 1336 (1387)
T ss_pred eEEeecCCCcceeeeccCCeEEEEecccCcccc---cceeeeccccCccceeeeeccCCCeeeecCcceEEEEecC-hhh
Confidence 999988764 49999999999999998843221 1111122211124889999999999999877999999986 443
Q ss_pred eeee------ecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 969 LKQW------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 969 ~~~~------~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
+..+ .....+.+.+++|.|.--++|+|+.|.+|.||..+...
T Consensus 1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 3322 22235678999999999999999999999999877653
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.5e-16 Score=157.45 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=164.3
Q ss_pred eEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecc
Q 001367 805 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 883 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~ 883 (1091)
.+++|+++|..+++++ ||++|+|+..+...+.....|...|.++.||| |+++|++-+.| ..+||+.++|..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999888888888888999999999999 99999999999 899999999977766653
Q ss_pred --ccCCeEEEEECCCC-----CEEEEEeCCCcEEEEEcCCCceeee-eeeeccCCCcCCCCCceEEEEcCCCCEEEE-Ee
Q 001367 884 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 954 (1091)
Q Consensus 884 --h~~~V~~l~~spdg-----~~las~s~Dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~ 954 (1091)
.......+.|+.|+ ..+++...-+.|+.|++..+..... +..+....+. .|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence 23356678898887 3344455567788888876543111 1222222332 5999999999999999 58
Q ss_pred cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 955 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 955 d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
||.|.|++..+.+++.-....|..-|+.+.|+||.+++++.+.|....|..+.-.
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9999999999999999888899999999999999999999999999999887653
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=139.78 Aligned_cols=242 Identities=14% Similarity=0.150 Sum_probs=175.2
Q ss_pred CCCCCeeEEEecCCCC----EEEEEeCCeEEEEEccCc--eeE--EEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001367 799 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMTF--KTI--LTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS 865 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~----~la~~~dg~i~iwd~~~~--~~~--~~~-----~~~~~~i~~l~~s~~~~~~la~g~~dg 865 (1091)
.|..+++.+.|.|+.. -+...++..+|+|.+... +.. ..+ ..+..++++..|..-+.++|.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 4889999999999874 233345678999998732 211 111 124568899999887889999999999
Q ss_pred eEEEEeccCcc---eeeeeccccCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEE
Q 001367 866 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 941 (1091)
Q Consensus 866 ~i~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 941 (1091)
+..|||++++. ...++-+|..+|..++|+.++ +.+||+|.||.++++|+..-+... .....+..+ .+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST-IIYE~p~~~----~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST-IIYEDPSPS----TPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce-EEecCCCCC----Ccceee
Confidence 99999999873 357788999999999999865 678999999999999998744221 122222222 358889
Q ss_pred EEcCC-CCEEEE-E-ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCC-CEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 942 QFHKD-QTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 942 ~fs~d-g~~la~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg-~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
+|++. -+++|+ + ....|.|.|++........+.+|.+.|..++|.|.. ..|+|++.|..+.+||+.+.-......+
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 99874 567777 4 446799999997766655678999999999999964 6899999999999999986533111222
Q ss_pred ccccCCCCcccccceeEEEeCCCCCCeEEEEec
Q 001367 1018 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1050 (1091)
Q Consensus 1018 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~ 1050 (1091)
...... +.+|. -+.|+|..+..++.+..
T Consensus 329 ilay~a---~~EVN--qi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 329 ILAYTA---GGEVN--QIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhhhhc---cceee--eeeecccCCCEEEEEec
Confidence 111111 33455 45677655677777653
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=165.08 Aligned_cols=235 Identities=13% Similarity=0.131 Sum_probs=161.8
Q ss_pred CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccc
Q 001367 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR 432 (1091)
Q Consensus 356 dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~ 432 (1091)
+..|.+||....... . +..|...+.+++|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~-~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF-I-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce-E-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998655422 1 55688899999999999999988644 479999998875322
Q ss_pred eeEEEeccccCeeEEEEcCCCCceEEEE-eeCCCcEEEE--eCCCCceeEEecCCCcceEEEeecccCCceEEEEEe-cC
Q 001367 433 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD 508 (1091)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~~~l~s-~~~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d 508 (1091)
+..+.+| ...++|+|||+ .|+. .+.+|.+.|| |+.++. ...+..+...+....|+ +||..|+..+ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS--PDGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC--CCCCEEEEEECCC
Confidence 2223333 44789999999 4554 4567765555 666655 45566677777778885 4666666554 57
Q ss_pred CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 509 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
|...+|+++..........+.. ....|+|||++++..+. + .+.+||+.+++........ ....+.|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~----~-~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP 381 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING----D-NVVKQDLTSGSTEVLSSTF-----LDESPSISP 381 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC----C-CEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence 8888888765433222222222 45789999999988764 2 3777999888754333221 234578999
Q ss_pred CCCEEEEEeCCCeEEEEEC--CCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 589 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
+|++++.++.++.+.+|.+ .+|+....+..+.+ .+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 9999999999998888875 35777777765443 5778889874
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-16 Score=172.55 Aligned_cols=342 Identities=18% Similarity=0.210 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCCCCCcccCCCCCCCCCCCCCCCCCCceeecCCCCCCcccccccc
Q 001367 171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVAL 250 (1091)
Q Consensus 171 rL~~Ll~qa~~~q~~~~~~~~~~~~~~sl~~dh~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1091)
-|..|+.|++++|+.+|++|.++++++|||.+|+|++ |.+..+.+-++..+. ...+..
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl----~~rel~--- 1071 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRL----GTRELQ--- 1071 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcc----cchhhc---
Confidence 3999999999999999999999999999999999998 222222211111111 000000
Q ss_pred cCCCCCCccccccCCCCCCccccCccccccccCCCcccccCcccCCcCCCCCCcchhhhcccccCCcccCCCchheeeec
Q 001367 251 SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTL 330 (1091)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~~~~l 330 (1091)
. +-.-.|++ -...+.+|+++ ...+++
T Consensus 1072 ~-------------------------------------~y~gV~g~-------~~dr~~IFSRF----------r~w~~f 1097 (1516)
T KOG1832|consen 1072 S-------------------------------------FYSGVHGN-------RRDRQFIFSRF----------RSWRSF 1097 (1516)
T ss_pred C-------------------------------------cccccccC-------cccchhhHhhc----------ccchhh
Confidence 0 00000110 00011112221 223567
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 410 (1091)
+.|+...+|++||.+.+ .|++|+..|.|+++++.+|..... ..+|+++|+.+.=|.||..
T Consensus 1098 rd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred hccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcce
Confidence 88999999999999998 569999999999999999988765 6679999999999999998
Q ss_pred EEEEECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-cC---C
Q 001367 411 LGVAYSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG---H 484 (1091)
Q Consensus 411 las~~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~---~ 484 (1091)
+.+.+... ...+|+..+- ....+.+. .-.++.|+...++ .++ |..-..+.+||+.++..+.++ .+ .
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RAL-GTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred eeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HHh-cccccceEEEecccCcHHHHhcCcchhh
Confidence 88765433 5789998752 22222232 3457888877553 233 333346889999999887763 22 1
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
...-+...|+| +..+++ .|| .+||++..+.+..+..-... ..-.|+|.|..++..+ .|||+++
T Consensus 1230 ~y~~n~a~FsP--~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS---------EIwD~RT 1292 (1516)
T KOG1832|consen 1230 SYSNNLAHFSP--CDTLIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS---------EIWDMRT 1292 (1516)
T ss_pred hhhccccccCC--CcceEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec---------hhhhhHH
Confidence 12224455644 333443 233 46999887766655543321 2335999999998864 5899999
Q ss_pred ceeeEEEecccccccceEEEEEcCCCCEEEEEe--CC---------------CeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DD---------------HVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s--~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
.+.++...... -..+.|+..|+.+++.- .| ...+-+|......+.++..... +..
T Consensus 1293 F~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~---~~D 1364 (1516)
T KOG1832|consen 1293 FKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRC---LLD 1364 (1516)
T ss_pred HHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccc---hhh
Confidence 88877665533 45678888887766542 00 1244555556666666655432 556
Q ss_pred EEEccCCCEEEEEE
Q 001367 628 ICFNKNGTLLAVIA 641 (1091)
Q Consensus 628 v~~s~~~~~l~~~~ 641 (1091)
++-+|...++++..
T Consensus 1365 lct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1365 LCTEPTDSFLGVIE 1378 (1516)
T ss_pred hhcCCccceEEEEe
Confidence 66666666665543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-14 Score=159.38 Aligned_cols=250 Identities=17% Similarity=0.166 Sum_probs=181.6
Q ss_pred CCccEEEEEECC-CCCEEEEEECCCEEEEEEeeCCccc--cee-EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 395 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 395 h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~--~~~-~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
-...|+|++|+| +..+||.|..+|.|.+||+..+... ..+ .....|..+++.+.|..+-...-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457999999999 6778888899999999999987652 111 122368899999999765442248999999999999
Q ss_pred eCCCCce------eEEec------CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--------eeeecCCCC
Q 001367 471 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL 530 (1091)
Q Consensus 471 d~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~ 530 (1091)
+++.-.. ..... .....++++.|.+. +-..++.|+.+|.|.--+...... ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 12345778888765 446799999999988733322211 224566788
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCceEEEEEecC-CceeeEEEecccccccceEEEEEcCCCCEE-EEEeCCCeEEEEECC
Q 001367 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN 608 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~s~dg~i~iwd~~ 608 (1091)
+|.++.++|-+..++..+. +..+++|... ...++..+..+. ..+.+++|||-...+ +++..||.+.+||+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999998876665543 7789999987 556666666655 669999999987554 557789999999987
Q ss_pred CCe--eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 609 KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 609 ~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
... ++...... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 543 33333333 335678888999999999999999999998744
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-13 Score=147.58 Aligned_cols=318 Identities=10% Similarity=0.121 Sum_probs=201.2
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
++.|.+.|..+.+.+..+.... ..-..+.|+||++++++++.||.|.++|+.+++.+.++..... ...+++++|
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~D 88 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSPD 88 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE--T
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcCC
Confidence 6779999999999999988644 3344578999999999999999999999999999999986543 588999999
Q ss_pred CCEEEEEE-CCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 634 GTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 634 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
|++++++. ..+.+.++|..+.+.+..+.......
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~--------------------------------------------- 123 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV--------------------------------------------- 123 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---------------------------------------------
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccc---------------------------------------------
Confidence 99998775 58999999999887776654221100
Q ss_pred cccccCCcccceeecCCccccccEEEEEEecCCCeEEEee-cCceEEEeecCCcccccccceeeccCCccccCCCCCcee
Q 001367 713 KPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 791 (1091)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1091)
.....++.++..++....++..- ..+.+.+-|+..... +.
T Consensus 124 -----------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~----------------------~~ 164 (369)
T PF02239_consen 124 -----------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN----------------------LK 164 (369)
T ss_dssp -----------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC----------------------EE
T ss_pred -----------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc----------------------cc
Confidence 00234677788888888555544 447777666543211 11
Q ss_pred eecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecC----CCCCeEEEEEcCC---------CCc
Q 001367 792 VNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----PSPTATSLAFNPH---------DNN 856 (1091)
Q Consensus 792 ~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~---------~~~ 856 (1091)
...+ ..........|+|++++++++. .+.|.++|.++++....+.. |......+ .+|. .+.
T Consensus 165 ~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 165 VTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGY 240 (369)
T ss_dssp EEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSS
T ss_pred eeee---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccc
Confidence 1111 1234456789999999988876 58999999999988766532 22233222 1221 122
Q ss_pred EEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEE----eCCCcEEEEEcCCCceeeeeeeeccCCCc
Q 001367 857 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS----GGDAQIFVWDVDGWGIQTCRSLQTPDGVM 932 (1091)
Q Consensus 857 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 932 (1091)
..++.-....+.+|+..+.+.+.++....++ .-+..+||++++... ...++|.++|.++.+... .+....+
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~-- 315 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG-- 315 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT--
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC--
Confidence 2222222335667888888999999877666 778889999999987 445899999999854221 2211111
Q ss_pred CCCCCceEEEEcCCCCEEEEE---ecCeEEEEEcCCcceeeeee
Q 001367 933 TLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWF 973 (1091)
Q Consensus 933 ~~~~~i~~l~fs~dg~~la~~---~d~~i~vwd~~~~~~~~~~~ 973 (1091)
..+..+.|++||+++-.+ .++.|.+||..+.+.+..+.
T Consensus 316 ---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 316 ---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 137899999999987763 34489999999999887754
|
... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-15 Score=152.15 Aligned_cols=197 Identities=21% Similarity=0.200 Sum_probs=150.9
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001367 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 925 (1091)
Q Consensus 846 ~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~ 925 (1091)
..++|++ +|..|++|+.||++|+|+..+...+.....|.+.|.++.|||||++|++.+.| ..+||+..++.... .
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence 7899999 89999999999999999999888888888899999999999999999999999 79999999974221 1
Q ss_pred eccCCCcCCCCCceEEEEcCCC---CEE-EE-E-ecCeEEEEEcCCcce-----eeeeecCCccCEEEEEEeeCCCEEEE
Q 001367 926 QTPDGVMTLAPSETHIQFHKDQ---TRF-LL-V-HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 994 (1091)
Q Consensus 926 ~~~~~~~~~~~~i~~l~fs~dg---~~l-a~-~-~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~v~fs~dg~~l~t 994 (1091)
..+.+.. .....+.|+.|+ .+. ++ . .-+.|+.||+..... .++... ....|++++.|+||++++.
T Consensus 223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEEE
Confidence 2222222 247788999888 333 33 2 334566666543221 112111 2457999999999999999
Q ss_pred EEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 995 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 995 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
|+.||.|.|++..+.+.+.-. ..+|...|+ .+.|+| |.+.+++.+.|.+..+..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~v-------k~aH~~~VT--~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYV-------KEAHLGFVT--GLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEee-------hhhheeeee--eEEEcC-CcCcccccccCCceeEEEEee
Confidence 999999999999988776322 234555555 678999 588999999999999999866
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-14 Score=158.88 Aligned_cols=257 Identities=13% Similarity=0.105 Sum_probs=182.4
Q ss_pred ecCCCccEEEEEECCCC-CEEEEEECCCEEEEEEeeCC----cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCc
Q 001367 392 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~ 466 (1091)
+..|+..|..++.+++. .++++|+.||+|++|+...- ...+...++.....++.++.+.+.+. .++.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 67799999999998755 99999999999999998642 22232223333567899999999999 6888899999
Q ss_pred EEEEeCCCC--ce-----eEEecCC-CcceEEE-eecccCCceEEEEEecCCeEEEEecCCCCceee--ecCCCCcEEEE
Q 001367 467 IKVWDAVTG--SR-----TYSFEGH-GAPVYSL-CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRM 535 (1091)
Q Consensus 467 i~iwd~~~~--~~-----~~~~~~~-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~ 535 (1091)
|++.++.-. +. .+....+ .+.+.++ ++........++.+..-+.|..||.+....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998752 11 1111212 2334433 333222223788899999999999987766554 34456689999
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC---CCEEEEEe--CCCeEEEEECCCC
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV 610 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~s--~dg~i~iwd~~~~ 610 (1091)
+.+|-+.+++.|.. .|.+.+||++-+.++....... ..++..+..+|- ....++++ ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999976 6779999999998888776544 366777766654 34555543 5788999999999
Q ss_pred eeEEEEeCCCCC-----------------CCCceEEEccCCCEEEEEECCCeEEEEECCCCCe
Q 001367 611 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 611 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
.....+...... ......++...+..+.+|+.|..|+.||......
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 777666543110 0112233444567899999999999999876533
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-13 Score=148.87 Aligned_cols=330 Identities=13% Similarity=0.128 Sum_probs=199.8
Q ss_pred EEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccc
Q 001367 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580 (1091)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 580 (1091)
++++-..+|.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.+.++.... .
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~----~ 79 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG----N 79 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS----E
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC----C
Confidence 3456677899999999998888888766555556789999999999865 5679999999999998887644 5
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCC-----CCCCceEEEccCCCEEEEEEC-CCeEEEEECCC
Q 001367 581 VSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNKNGTLLAVIAN-ENRIKILETPE 653 (1091)
Q Consensus 581 v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~ 653 (1091)
...+++++||++++++. .++.+.++|.++.+.+..++.... .+.+..+..+|....+++.-. .+.|.+.|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 78899999999999865 789999999999999988865432 224567777887775555444 47787777654
Q ss_pred CCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCcccc
Q 001367 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 733 (1091)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 733 (1091)
...+.... + ...
T Consensus 160 ~~~~~~~~---------------------------------------------------------------i-----~~g 171 (369)
T PF02239_consen 160 PKNLKVTT---------------------------------------------------------------I-----KVG 171 (369)
T ss_dssp SSCEEEEE---------------------------------------------------------------E-----E--
T ss_pred ccccceee---------------------------------------------------------------e-----ccc
Confidence 32211000 0 011
Q ss_pred ccEEEEEEecCCCeEEEee-cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC
Q 001367 734 NKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812 (1091)
Q Consensus 734 ~~i~~~~~s~dg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 812 (1091)
.......|+|++++++++. .+..+-++|....+.. .....|............|...-.--+.+..
T Consensus 172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v-------------~~i~~g~~p~~~~~~~~php~~g~vw~~~~~ 238 (369)
T PF02239_consen 172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV-------------ALIDTGKKPHPGPGANFPHPGFGPVWATSGL 238 (369)
T ss_dssp TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE-------------EEEE-SSSBEETTEEEEEETTTEEEEEEEBS
T ss_pred ccccccccCcccceeeecccccceeEEEeeccceEE-------------EEeeccccccccccccccCCCcceEEeeccc
Confidence 2344678889998876654 4567778776543320 1111111110000000001111111122223
Q ss_pred CCEEE-EEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEE----eCCCeEEEEeccCcceeeeecccc-C
Q 001367 813 DAYLF-SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKLEGHS-K 886 (1091)
Q Consensus 813 g~~la-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g----~~dg~i~iwd~~~~~~~~~l~~h~-~ 886 (1091)
+...+ ..+.+.+.+||..+++.++++...... .-+..+| +++++.+. ...++|.++|..+.+.+.++.... .
T Consensus 239 ~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~ 316 (369)
T PF02239_consen 239 GYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK 316 (369)
T ss_dssp SSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-
T ss_pred cceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC
Confidence 33332 223456678999999999999877666 7788899 88888887 455799999999988777775333 3
Q ss_pred CeEEEEECCCCCEEEEEeCC--CcEEEEEcCCCceee
Q 001367 887 RVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQT 921 (1091)
Q Consensus 887 ~V~~l~~spdg~~las~s~D--g~i~vwd~~~~~~~~ 921 (1091)
.+..+.|++||+++..+..+ +.|.++|..+.+...
T Consensus 317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp -EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred cEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 58999999999987655443 369999999976544
|
... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-14 Score=147.06 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=126.4
Q ss_pred cCCCCEEEEEe-CCeEEEEEccCceeEEEec----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC----------
Q 001367 810 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 874 (1091)
Q Consensus 810 s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~---------- 874 (1091)
.|.+--+.++- -|.|.+.|....+..+.+. -....++++.|-|.+...++++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45666666665 5889888876533222222 13368999999996667777788899999997531
Q ss_pred ----cc--------------eeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCC
Q 001367 875 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 936 (1091)
Q Consensus 875 ----~~--------------~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 936 (1091)
+. ++..+.--.+.|...+|||||++||+.|.||.++|+|+.+.+ .+-..+... +
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence 11 122222234578899999999999999999999999999843 333333322 3
Q ss_pred CceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEee
Q 001367 937 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC 987 (1091)
Q Consensus 937 ~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~ 987 (1091)
...|++|||||+||++ |.|.-|.||.+...+.+.. -.+|...|..|+|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence 7899999999999999 6888999999998888776 568999999999997
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-14 Score=157.97 Aligned_cols=298 Identities=15% Similarity=0.203 Sum_probs=207.9
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC--CC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 408 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 408 (1091)
.+.......+.|+|-.. .++++...-.|+|||.+.++.+..+ |.+ ......|+.+.+-. |.
T Consensus 1061 ~~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F-----~n~-----------~~~~t~Vs~l~liNe~D~ 1123 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGF-----DNG-----------AFPDTRVSDLELINEQDD 1123 (1387)
T ss_pred hcCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccc-----cCC-----------CCCCCccceeeeecccch
Confidence 34455677889999887 5577776688999999999877531 111 11346788888876 66
Q ss_pred CEEEEEECCCEEEEEEee-CC-ccccee---EEEeccc----cCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 409 SLLGVAYSKHIVQLYAYH-GG-SDARQQ---LEIDAHV----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~-~~-~~~~~~---~~~~~h~----~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
.+|++|+.||.|+||+-- ++ +..+.. ..+.++. +.=.-+.|-.... +|+++|.-..|+|||.....+.+
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEe
Confidence 799999999999999643 22 111111 1122211 1113456766666 56667768899999999888877
Q ss_pred EecC-CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc---eeeecCCCCc--EEEEEEcCCCCE-EEEEecCCC
Q 001367 480 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKE 552 (1091)
Q Consensus 480 ~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~--i~~~~~s~d~~~-l~~~~~~~~ 552 (1091)
.+.. ....|+++.-... .|..+++|..||.|++||.+.... ...++.|... |..+.+-+.|-. |++++.
T Consensus 1202 diP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~--- 1277 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ--- 1277 (1387)
T ss_pred ecccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc---
Confidence 7643 4455777765433 368999999999999999876543 4456667665 999999887755 888876
Q ss_pred CceEEEEEecCCceeeEEEe--cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-----CCCCCC
Q 001367 553 GESFLVEWNESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPEN 625 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v 625 (1091)
+|.|++||++.......+. .+..-++..+++..++....+++|+. +.|.||++...+ +..+..+ .....+
T Consensus 1278 -~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1278 -DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred -CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCc
Confidence 5569999998752222221 22111235899999999999999988 999999986533 3332221 123467
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
.+++|+|..-++|+|+.|..|.||.....
T Consensus 1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ceeeecchhHhhhhccCCceEEEeecCCc
Confidence 89999999999999999999999987654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-11 Score=121.97 Aligned_cols=420 Identities=11% Similarity=0.093 Sum_probs=235.2
Q ss_pred EcCC--CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE-----
Q 001367 342 FHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA----- 414 (1091)
Q Consensus 342 fspd--g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~----- 414 (1091)
..|| |..++.++..| +..+++.+|+..+ +..|-+-|+...|+|||+.+|..
T Consensus 44 l~PDI~GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~~~ 101 (668)
T COG4946 44 LNPDIYGDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVMLG 101 (668)
T ss_pred cCCcccCcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEEec
Confidence 3554 55677777654 3444556676554 55688889999999999999873
Q ss_pred --ECCCEEEEEEeeCCcccceeEEEeccccCee-EEEEcCCCCceEEEEeeCCCcEEEE----eCCC-CceeEEecCCCc
Q 001367 415 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCGDDKTIKVW----DAVT-GSRTYSFEGHGA 486 (1091)
Q Consensus 415 --~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~~~l~s~~~d~~i~iw----d~~~-~~~~~~~~~~~~ 486 (1091)
.....+.+.+.+.|+..+. +.-| .+.+ -+-|.|||+ ++++...-.-..-| .+.. |.....+ .-+
T Consensus 102 ss~~taDly~v~~e~Ge~kRi--TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlG 173 (668)
T COG4946 102 SSLQTADLYVVPSEDGEAKRI--TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLG 173 (668)
T ss_pred CCCccccEEEEeCCCCcEEEE--EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec--cCC
Confidence 1234577888888875442 2223 2333 346999998 67666543222222 2211 1111111 122
Q ss_pred ceEEEeecccCCceEEEEEecC-----------C-eEEEEecCCCC-ceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 487 PVYSLCPHAKENIHFIFSISVD-----------G-KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~d-----------g-~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
+.+.+.+ .|| .++.|-.. | .=++|--..+. ....+..-.+.|.+-..-.+.-++++ +-+|
T Consensus 174 pathiv~---~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls---D~eG 246 (668)
T COG4946 174 PATHIVI---KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS---DHEG 246 (668)
T ss_pred ceeeEEE---eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe---cccC
Confidence 3333332 233 22222111 0 01233222222 11111111222222222222222222 2345
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe---CCCCC---CCCc-
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGGGL---PENP- 626 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~~~---~~v~- 626 (1091)
-+.++--|+....+.+....+ .-.+=..+.||+.++-. ..|.|++||.++.++...-- ..... ..+.
T Consensus 247 ~GnlYSvdldGkDlrrHTnFt-----dYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~p 320 (668)
T COG4946 247 VGNLYSVDLDGKDLRRHTNFT-----DYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNP 320 (668)
T ss_pred ccceEEeccCCchhhhcCCch-----hccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCH
Confidence 666777676544332221111 12222346688877653 45789999988765432211 11000 0011
Q ss_pred --eEE-Ecc-CCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccc
Q 001367 627 --RIC-FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEIS 702 (1091)
Q Consensus 627 --~v~-~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s 702 (1091)
-+. |++ +|.+++..+. |...+.+...+..++
T Consensus 321 skyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-------------------------------------------- 355 (668)
T COG4946 321 SKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-------------------------------------------- 355 (668)
T ss_pred HHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE--------------------------------------------
Confidence 111 333 5677777766 455554433221111
Q ss_pred cccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCc-eEEEeecCCcccccccceeeccCCcc
Q 001367 703 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRL 781 (1091)
Q Consensus 703 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~ 781 (1091)
.++...|.-..+..+++.++.+..|| .+-+++......
T Consensus 356 ---------------------------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-------------- 394 (668)
T COG4946 356 ---------------------------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-------------- 394 (668)
T ss_pred ---------------------------cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE--------------
Confidence 11344566666777777788888887 777877554321
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeC-CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEE
Q 001367 782 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 860 (1091)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~ 860 (1091)
... .+.-+.|.++.+++||++++++.+ ..+.+.|+.+++....-+...+-|+.++|+| +++++|.
T Consensus 395 ---------kr~----e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAY 460 (668)
T COG4946 395 ---------KRI----EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAY 460 (668)
T ss_pred ---------EEe----eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEE
Confidence 111 025578999999999999999986 7899999999987766666778899999999 9999999
Q ss_pred EeCCC----eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeC
Q 001367 861 GMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 905 (1091)
Q Consensus 861 g~~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~ 905 (1091)
+--+| .|++||+.+++....-. ..+.=.+-+|.||+++|.--+.
T Consensus 461 afP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 461 AFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred ecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 88776 79999999887654332 3333456789999999876553
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=152.59 Aligned_cols=296 Identities=14% Similarity=0.142 Sum_probs=223.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
|.+|.+.|..+.|+..|..|++|+.|..|.+||+..+..... -..||...|....|-|......+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 778999999999999999999999999999999998865432 234899999999998865444799999999999876
Q ss_pred CC-CCce--eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec---CCCC---cEEEEEEcCCCC
Q 001367 472 AV-TGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGL---GCTRMAYSANGR 542 (1091)
Q Consensus 472 ~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~---~i~~~~~s~d~~ 542 (1091)
+. ++.+ ...+..|.++|..++..|. ....|.+++.|+.+.-.|++.......+. .+.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 3333 3456679999999988654 33579999999999999988765443322 1222 467888889776
Q ss_pred -EEEEEecCCCCceEEEEEecCCcee------eEEEecccc---cccceEEEEEcCCCCEEEEEeCCCeEEEEECCC--C
Q 001367 543 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 610 (1091)
Q Consensus 543 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~--~ 610 (1091)
.+++++. +.++++||.+.-.. +..+..+.. ..-.|++++|+.++.-++++..|-.|+++...- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5555554 66789998764322 223322221 124689999998888888888899999995432 2
Q ss_pred ----------eeEEE-EeCCCCCCCCceEE-EccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccc
Q 001367 611 ----------QLLTT-IDAGGGLPENPRIC-FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1091)
Q Consensus 611 ----------~~~~~-~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1091)
..+.. +.+|.....|..+- |-|...++++|++-|.|.||+-.+++.++.+.+...-|+|+.-
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEp------ 444 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEP------ 444 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCC------
Confidence 22222 56666655677776 4678899999999999999999999999999887777777765
Q ss_pred ccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 679 TGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 679 ~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
.|.-..|++.+-|..|+||...
T Consensus 445 ---------------HP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 445 ---------------HPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred ---------------CCCCchhhccCCccceeeecCC
Confidence 5666788999999999999863
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.1e-14 Score=159.35 Aligned_cols=274 Identities=15% Similarity=0.179 Sum_probs=189.3
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
...+..|..|+..|..++.+++...++++||.||+|++||...-..-. ..++ ...++..-+..+.++.
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~vt 1105 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEKVT 1105 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEEEE
Confidence 467889999999999999988774488999999999999986422110 0000 1111333568999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCC--cccc--eeEEEe--ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGG--SDAR--QQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~--~~~~--~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
+.+.+..+|+++.||.|++.++..- +... +..... ....-|..-+|....+...++.+..-+.|..||+.+...
T Consensus 1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 9999999999999999999998762 1110 000111 112234444565554444788888889999999988777
Q ss_pred eEEec--CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC-CCcEEEEEEcC---CCCEEEEEecCC
Q 001367 478 TYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSA---NGRRLFSCGTSK 551 (1091)
Q Consensus 478 ~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~---d~~~l~~~~~~~ 551 (1091)
+++++ ...+.|++++.++ .+.+++.|+..|.+.+||++-......+..+ ..+++.+...| .....++++..
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~- 1262 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS- 1262 (1431)
T ss_pred HHhhhcCccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc-
Confidence 66554 3457799999854 5679999999999999999988777765543 34666666555 44566666542
Q ss_pred CCceEEEEEecCCceeeEEEeccc----------------ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQ----------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~----------------~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 613 (1091)
+.+.|.+|++.+|.....+.... .+.-....+++...+..+++|+.|..|+.||....+..
T Consensus 1263 -~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1263 -SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred -CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 46679999999987766654431 00011223344445678899999999999998775544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-12 Score=139.81 Aligned_cols=508 Identities=12% Similarity=0.144 Sum_probs=304.1
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcc------------cceeEEEeccccCeeEEEEcCCCCceEEEEee
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~ 462 (1091)
......|++|+....|+|+|+.||.++|-.+.+... +....++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 557889999999999999999999999998865322 111235789999999999998887 689999
Q ss_pred CCCcEEEEeCCCCceeEEec--CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCC
Q 001367 463 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 540 (1091)
Q Consensus 463 ~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d 540 (1091)
.+|.|.||-+-.|.-...+. .....|.+++| +.+|..+.....||.|.+=.++... +.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence 99999999988776544332 24456778887 5678888888888888765544321 1111122223456889999
Q ss_pred CCEEEEEecCCCCceEEEEEecCCce-------eeEEEec-ccccccceEEEEEc--------CCCCEEEEEeCCCeEEE
Q 001367 541 GRRLFSCGTSKEGESFLVEWNESEGA-------IKRTYQG-LQLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI 604 (1091)
Q Consensus 541 ~~~l~~~~~~~~~~~~i~iwd~~~~~-------~~~~~~~-~~~~~~~v~~v~~~--------~~~~~l~~~s~dg~i~i 604 (1091)
.+.++.+-. ++.+.++|.+..- +.....+ .......|..+.|. |+...++++-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 988877655 4458888865421 1111111 11011234455553 57889999999999888
Q ss_pred EECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC---------eEEEEECCCCCeecccccccccceeeeeccc
Q 001367 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---------RIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
-.-.+......+... -.+....|+++|..|++++.+. .|.+|. .-|..+..++....
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~---------- 309 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS---------- 309 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc----------
Confidence 765544333333322 2467889999999999998753 222221 11222233333333
Q ss_pred cccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCc
Q 001367 676 STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 755 (1091)
Q Consensus 676 ~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 755 (1091)
.|+++.|-..|-.++ ..-|+
T Consensus 310 -----------------------------------------------------------~It~lsWEg~gLriA-~Avds 329 (1189)
T KOG2041|consen 310 -----------------------------------------------------------CITGLSWEGTGLRIA-IAVDS 329 (1189)
T ss_pred -----------------------------------------------------------eeeeeEEcCCceEEE-EEecc
Confidence 344444444333222 22233
Q ss_pred eEEEeecCCccc----------ccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeE
Q 001367 756 VHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI 824 (1091)
Q Consensus 756 ~i~vw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i 824 (1091)
.+.+=++...-. ...+.......+.+||..+.+.... .-....+++++.+.-.|+.-. ++.+
T Consensus 330 fiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 330 FIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred eEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCCC
Confidence 333322211100 0011111223455677777664332 233456777777766666554 4555
Q ss_pred EEEE-ccCceeEEEec----------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce----------------
Q 001367 825 SLYI-VMTFKTILTIM----------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---------------- 877 (1091)
Q Consensus 825 ~iwd-~~~~~~~~~~~----------~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~---------------- 877 (1091)
.-++ +++...+..+. ..-..|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 403 ~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h 480 (1189)
T KOG2041|consen 403 PEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFH 480 (1189)
T ss_pred cchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhccccccc
Confidence 4442 11211111111 0011222222222 56677777766 577886533211
Q ss_pred ----------------eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEE
Q 001367 878 ----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 941 (1091)
Q Consensus 878 ----------------~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 941 (1091)
..++.|..++|.+++.| .++|..+-..|.|.-+.+.+... .+...- ...+..+
T Consensus 481 ~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l-----~n~y~~----n~~~y~~ 549 (1189)
T KOG2041|consen 481 GDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVL-----TNSYPV----NPSIYSI 549 (1189)
T ss_pred CCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceee-----eecccc----CchheeE
Confidence 13445667788888886 47888899999999999988432 222211 1358899
Q ss_pred EEcCCCCEEEE-EecCeEEEEEcC---CcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 942 QFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 942 ~fs~dg~~la~-~~d~~i~vwd~~---~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
+.+.+...+|+ -.-|.+.+.|+. +|..+.-+.......|+.+.|..|...|++--+...++|++
T Consensus 550 ~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifr 617 (1189)
T KOG2041|consen 550 KLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFR 617 (1189)
T ss_pred eeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEec
Confidence 99999888887 456777777665 45555545555677899999998887666555555666665
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.7e-14 Score=155.05 Aligned_cols=253 Identities=17% Similarity=0.192 Sum_probs=184.5
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC--CEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG--SLLG 412 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg--~~la 412 (1091)
.+|+|++|+|....++|.|..+|.|.+||+..+..... ..-......|..+|+.+.|-.+- .-++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~ 309 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVWLQNEHNTEFF 309 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEEeccCCCCceE
Confidence 49999999999888999999999999999988776310 00111255699999999998754 4499
Q ss_pred EEECCCEEEEEEeeCCcccceeEEE--e-------ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe---CCCCc----
Q 001367 413 VAYSKHIVQLYAYHGGSDARQQLEI--D-------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS---- 476 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~--~-------~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd---~~~~~---- 476 (1091)
+++.||.|..|+++.-........+ . .-...+++++|.+.... .++.|+.+|.|.-=+ ...+.
T Consensus 310 s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~~~~ 388 (555)
T KOG1587|consen 310 SLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPEVSY 388 (555)
T ss_pred EEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcccccccc
Confidence 9999999999988653321111011 1 11236899999987766 688899999887733 22222
Q ss_pred -eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecC-CCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 477 -RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 477 -~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
.+..+..|.++|+++.++|-.. ..+++++ |-+++||.-. .......+..+...+++++|||-.-.++++. +++
T Consensus 389 ~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~---d~~ 463 (555)
T KOG1587|consen 389 KGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV---DGD 463 (555)
T ss_pred cccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---cCC
Confidence 2335667899999999876543 2344444 9999999887 5666667777777799999999887776665 358
Q ss_pred eEEEEEecCCce--eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 555 SFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 555 ~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
|.+.+||+.... ++....... .....+.|++.|+.+++|...|++.+|++..
T Consensus 464 G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 464 GNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 889999987543 233322222 5677888999999999999999999999864
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-11 Score=139.07 Aligned_cols=199 Identities=17% Similarity=0.181 Sum_probs=156.0
Q ss_pred CeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce-E-EEeecccCCceEEEEEecCCeEEEEecCCCC
Q 001367 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-Y-SLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1091)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 520 (1091)
.|....+.-+.+ .++.+..++.+.+||...+..+.......... . ++-+-.+.+.-++++|+.-+.|.+|++...+
T Consensus 89 wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 89 WIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344455566666 57777778899999988887776665332221 1 1122234455789999999999999998666
Q ss_pred ceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE-EEecccccccceEEEEEcCCCCEEEEEeCC
Q 001367 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1091)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d 599 (1091)
....+.+|.+.|.++.++.||+++++++. |..+++|++.+++... ..-+|. ..+..++|.|+ .++++++|
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~~fgHs---aRvw~~~~~~n--~i~t~ged 237 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCTGFGHS---ARVWACCFLPN--RIITVGED 237 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCccccccc---ceeEEEEeccc--eeEEeccc
Confidence 66678899999999999999999999987 6679999999988776 455666 89999999997 89999999
Q ss_pred CeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 600 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
-+.++|+.+. ..+..+..|.. ..+..++..++...+++++.|+.+++|+....
T Consensus 238 ctcrvW~~~~-~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 238 CTCRVWGVNG-TQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEEEeccc-ceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999997654 44446666544 36899999999999999999999999998754
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-12 Score=125.90 Aligned_cols=239 Identities=14% Similarity=0.197 Sum_probs=169.0
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEecccc--CeeEEEEcCCCCceEEEEeeC-----CCcEEEE
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQISVITCGD-----DKTIKVW 470 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~s~d~~~~~l~s~~~-----d~~i~iw 470 (1091)
...+++|+.|..-+++|..+| .+||+.+--+... .-.-+.+ .+..+-| -.+.+.|+-|+. -..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 445599999999999998888 8999987522211 1111222 2333333 233323333332 2579999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecC-CCCceeeecCCC--CcEEEEEEcCCCCEEEEE
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~~~~s~d~~~l~~~ 547 (1091)
|=...+++.++. ...+|.++.+... .|++ -..+.|.+|.+. +.+....+.... ....+++-..+...|+.-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r~----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRRD----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcCC----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 966777887775 6788999998432 3433 456789999887 455555444332 234344333344444443
Q ss_pred ecCCCCceEEEEEecCCcee--eEEEecccccccceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeeEEEEeCCCCCCC
Q 001367 548 GTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPE 624 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~ 624 (1091)
+ -..|.|++-|+...+. ...+..|. ..|.|++.+-+|..++++|..|+ |||||..+|+.+..+........
T Consensus 155 g---~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 155 G---FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred C---CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 3 2367899999876654 35666776 99999999999999999999998 79999999999999987766678
Q ss_pred CceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 625 NPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
|.+++|||++.+|+++++.|+++|+.+...
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999999999999998764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-14 Score=158.45 Aligned_cols=228 Identities=18% Similarity=0.196 Sum_probs=149.0
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcC--CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~--dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
....+.+..|...+...+|||||++++.++.. +..|.+||+.+|+...... +.+| ..+
T Consensus 193 g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~---~~~ 252 (429)
T PRK01742 193 GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH---NGA 252 (429)
T ss_pred CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc---cCc
Confidence 44456778888899999999999966444322 2469999998886432100 2233 346
Q ss_pred EEECCCCCEEEEEE-CCCEEEEE--EeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ce
Q 001367 402 VVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SR 477 (1091)
Q Consensus 402 l~~spdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~ 477 (1091)
++|||||++|++++ .+|.+.|| |+.++.. . .+..+...+...+|+|||+. +++++..++...||++... ..
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence 89999999998875 57765555 5555542 2 45567777889999999995 3334456788888876532 22
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
...+ .+.. ....| ++||++|+..+.++ +.+||+.++........ ....++.|+|||++++.++.++. ...+
T Consensus 328 ~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~-~~~l 398 (429)
T PRK01742 328 ASLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL-GKVL 398 (429)
T ss_pred eEEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC-ceEE
Confidence 2333 3333 34455 56778888887765 45599887765432222 12356789999999999876322 2233
Q ss_pred EEEecCCceeeEEEecccccccceEEEEEcCC
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 589 (1091)
.+++ .+|...+.+..+. +.+...+|+|-
T Consensus 399 ~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 399 QLVS-ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred EEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence 3444 3566777777665 66788888874
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-13 Score=132.55 Aligned_cols=232 Identities=15% Similarity=0.179 Sum_probs=176.1
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC-C
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V 473 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~-~ 473 (1091)
-..+|+|.||++|+..+|++-....|.||.....+.....+++..|...|+.++|+|.+. .|++|+.|..-+||.. .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 347999999999999999999999999999999887777889999999999999999998 6999999999999998 3
Q ss_pred CCc--eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee----eecCCCCcEEEEEEcCCCCEEEEE
Q 001367 474 TGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 474 ~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
.++ +.-.+..++...+++.|+|.+ ..+++|+....|.+|-++....-. .-+.....|.++.|+|++-.|+++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 333 334556688899999997654 589999999999999887655432 233455678999999999999998
Q ss_pred ecCCCCceEEEEEec-----CC-------------ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 548 GTSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
+. |+..+++.. +. |+++..+.. ..+.+..+.|+|+|..|+-.+.|..+.+-|...
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 86 444666532 11 222333332 247899999999999999999999999999876
Q ss_pred Ce-eEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001367 610 VQ-LLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1091)
Q Consensus 610 ~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1091)
.. .+....... -+..++.|-.+...++.
T Consensus 238 p~~~v~~~~~~~--lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 238 PSERVQSVATAQ--LPLLSVSWISENSVVAA 266 (361)
T ss_pred Cchhccchhhcc--CCceeeEeecCCceeec
Confidence 64 222222211 23455666554443333
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-12 Score=130.26 Aligned_cols=288 Identities=16% Similarity=0.164 Sum_probs=187.7
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC-CCEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVA 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~ 414 (1091)
.+..++|++.-- -+|++..|-.|++||-... +... +-......|+|++|-|. ++-|++|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~ksst-~pt~------------------Lks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSST-CPTK------------------LKSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCCC-CCce------------------ecchhhcceeEEEeccCCcceeeee
Confidence 677888888543 3588889999999997662 2211 01224568999999995 5677888
Q ss_pred ECCCEEEEEEeeCCccc-----------ceeEEEeccccCeeEEEEcCCCCceEEEEeeC-CCcEEEEeCCCCceeEEec
Q 001367 415 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~ 482 (1091)
+..| |++|........ .+...-.+| .+|++++|.+||. .+++++. |..|.|||..++..+.-..
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 7776 999987532111 112223355 6899999999999 6777764 6689999999998775554
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
...+.+.-+.|+ +|+.+|++++-|+..++|+....-.........+.|...+|+|+|++|+..... ...++-...
T Consensus 236 ~glgg~slLkwS--Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWS--PDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEc--CCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence 455677788885 577899999999999999655443333344445589999999999988765431 222222211
Q ss_pred CC--ce-----------eeE------EEecccccccceEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeeEEE
Q 001367 563 SE--GA-----------IKR------TYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 563 ~~--~~-----------~~~------~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~ 615 (1091)
.. +. ++. ...+...-.+.+.+++|.|.|.++++.-.. +.|.+||....-.+..
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 11 10 000 111111123678899999999999986433 3366788765444433
Q ss_pred EeCC-CCCCCCceEEEcc---CCCEEEEEECCCeEEEEECC
Q 001367 616 IDAG-GGLPENPRICFNK---NGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 616 ~~~~-~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.... .....-..++|+| ++.+|.++-..|.+.-|.+.
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 3111 1111235677776 67788888888888777654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-11 Score=137.69 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=151.4
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc-----cEEEEEECCCCCE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGSL 410 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~~ 410 (1091)
.|....+.-+.+ .++.+..+..+.+||...+...... .+.. ...-+.++++.-+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i--------------------~~~er~~l~~~~~~g~s~~~~~ 147 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKI--------------------QSDERCTLYSSLIIGDSAEELY 147 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhc--------------------CCCceEEEEeEEEEeccCcEEE
Confidence 444455566665 4577888899999999877665421 1211 2233557788889
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE-EecCCCcceE
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVY 489 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~ 489 (1091)
+++|+.-+.|.+|+....+.. ..+.||.+.|.++.|+.||. ++++.|.|.++++|++++++... ..-+|...|.
T Consensus 148 i~~gsv~~~iivW~~~~dn~p---~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKP---IRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred EEeccccccEEEEeccccCCc---ceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence 999999999999999833211 15789999999999999999 89999999999999999998776 6678999999
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC-CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
.++|.++ .+++++.|-+.++|+.+..... .+..|. ..+..++..++...+++++. |+.+++|+....
T Consensus 223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 223 ACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred EEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 9999654 8999999999999976544433 555543 46889999988888888876 667999987653
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=149.56 Aligned_cols=245 Identities=13% Similarity=0.186 Sum_probs=169.7
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
+-+.|.||++-|.|++|+.||. +|++|+.|-.+.|||.-..+.+.. +-+||...|.++.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence 3467899999999999999998 889999999999999987666643 256899999999999
Q ss_pred C--CCCEEEEEECCCEEEEEEeeCCcc-------cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 406 P--DGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 406 p--dg~~las~~~d~~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
| +.+.+++|..|..|+++|+...+. ......+..|...|..++-.|++.. .+.+++.||+|+-+|++...
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence 9 678899999999999999985221 2233346679999999999999955 89999999999999998632
Q ss_pred e-eEE---------ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee-----ecCCCCcEEEEE-EcCC
Q 001367 477 R-TYS---------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMA-YSAN 540 (1091)
Q Consensus 477 ~-~~~---------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~-~s~d 540 (1091)
. ... +...--...++.++|.. ..+|+.|+.|-..++||.+....... .........|+. |+|.
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 1 111 11111234667777664 47999999999999999643211110 000111111221 2222
Q ss_pred CCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE
Q 001367 541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1091)
Q Consensus 541 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1091)
+- .. ..+..... ...++-+.|+|+|.-+++.-....|+++|+..++....+
T Consensus 261 hl----kn--------------~~gn~~~~-------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 261 HL----KN--------------SQGNLDRY-------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cc----cC--------------cccccccc-------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 11 00 00100000 124667899999988888766678999999887765544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.3e-09 Score=126.28 Aligned_cols=509 Identities=12% Similarity=0.134 Sum_probs=283.9
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEE----EeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
....|.++.+-++...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999998 444432 11 2233456899999999999 66666667888877
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--------------eeeecCCCCcEEEEE
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------------RVDYDAPGLGCTRMA 536 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~i~~~~ 536 (1091)
+ .+-..+....-+..... ....++.+..+.=.-+.=..++. ...+. ....-..++
T Consensus 148 t-~~fd~i~E~~l~~~~~~---------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS 216 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFG---------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS 216 (928)
T ss_pred e-ccceEEEEeecCccccC---------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence 5 55555554433221110 01223322211100000000000 01111 233456789
Q ss_pred EcCCCCEEEEEecCCC-C-ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCe
Q 001367 537 YSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQ 611 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~---dg~i~iwd~~~~~ 611 (1091)
|-.||+++++.+.+.. + ...+++|+-+ |.+...-.... +--.+++|-|.|+++++... ...|.+|..+ |-
T Consensus 217 WRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GL 291 (928)
T PF04762_consen 217 WRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GL 291 (928)
T ss_pred ECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-Cc
Confidence 9999999998876332 3 5889999965 66544444322 44567899999999988653 4567777744 43
Q ss_pred eEEEEeCC--CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCccc
Q 001367 612 LLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1091)
Q Consensus 612 ~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~ 689 (1091)
.-..+... .....|..+.|++|+..||+...|. |.+|...+-....+..- .|
T Consensus 292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei--------~~----------------- 345 (928)
T PF04762_consen 292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI--------RF----------------- 345 (928)
T ss_pred EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE--------Ec-----------------
Confidence 33334332 2334689999999999999988665 99998775532211110 00
Q ss_pred CCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCC-eEEEeecCceEEEeecCCcccc
Q 001367 690 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLT 768 (1091)
Q Consensus 690 ~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~ 768 (1091)
+ ....+..+.|+|... .|...+.+|.+..+++.
T Consensus 346 --------------------------------------~---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~----- 379 (928)
T PF04762_consen 346 --------------------------------------S---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA----- 379 (928)
T ss_pred --------------------------------------c---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE-----
Confidence 0 011122255555432 35555555666665542
Q ss_pred cccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC-CCCEEEEEeCCeEEEEEccCceeE-----EEecCCC
Q 001367 769 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMPPS 842 (1091)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~~~dg~i~iwd~~~~~~~-----~~~~~~~ 842 (1091)
|+...+. ..+| |...+++.++.++.+-.+...... ..+. ..
T Consensus 380 -------------~~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~ 426 (928)
T PF04762_consen 380 -------------WDVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LP 426 (928)
T ss_pred -------------EEEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CC
Confidence 1111111 0111 222344444556776665543221 2222 34
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce--------eeeec----------cccCCeEEEEECCCCCEEEEEe
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------ISKLE----------GHSKRVTGLVFSDALNILVSSG 904 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spdg~~las~s 904 (1091)
..|.+++|++ ++..+|+-..||.|.+|....... ...+. .-...+..++|..+...++...
T Consensus 427 ~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 427 SPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence 6899999999 666688899999999998544221 11111 1234578889988877776665
Q ss_pred CC---CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCE
Q 001367 905 GD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPI 980 (1091)
Q Consensus 905 ~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v 980 (1091)
.+ ..+.++++...+.. .......... ..+..+...++...++. ..+|.+..++.........-++. ...-
T Consensus 506 ~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~~ 579 (928)
T PF04762_consen 506 SDSNQSKIVLVDIDDSENS--ASVESSTEVD---GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCPW 579 (928)
T ss_pred cCcccceEEEEEeccCCCc--eeEEEEeccC---ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCcE
Confidence 54 57888888543211 1111111111 13555555566553444 77888887766544322211111 2222
Q ss_pred EEEEEeeCCC---EEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEE
Q 001367 981 SQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1057 (1091)
Q Consensus 981 ~~v~fs~dg~---~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w 1057 (1091)
..+....+.. .++.-+..|.+++ ++..++ ..+.+ ++.+ +.+|+.......+++.
T Consensus 580 ~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la--------------~~~tS--F~v~---~~~Ll~TT~~h~l~fv 636 (928)
T PF04762_consen 580 MEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA--------------SNCTS--FAVT---DSFLLFTTTQHTLKFV 636 (928)
T ss_pred EEEEEECCccceeEEEEECCCCEEEE----CCEEEe--------------cCCce--EEEE---cCEEEEEecCceEEEE
Confidence 3333333332 3443334444443 233331 12333 3444 3577777778889999
Q ss_pred ecC
Q 001367 1058 EPN 1060 (1091)
Q Consensus 1058 ~~~ 1060 (1091)
++.
T Consensus 637 ~L~ 639 (928)
T PF04762_consen 637 HLN 639 (928)
T ss_pred ECc
Confidence 997
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-12 Score=127.57 Aligned_cols=260 Identities=12% Similarity=0.116 Sum_probs=163.5
Q ss_pred cccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC
Q 001367 733 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812 (1091)
Q Consensus 733 ~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 812 (1091)
...|++++|-|.+..-++.+..+-|.+|..+..... .+.....+..+... +...+| ..|+++.+.+|
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~----------~r~~~~~s~~~~qv--l~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA----------NRNIRMMSTHHLQV--LQDPGH-NPVTSMQWNED 206 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCccccc----------ccccccccccchhh--eeCCCC-ceeeEEEEcCC
Confidence 346778888887766777777778888876543210 00000111111222 222234 78999999999
Q ss_pred CCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEE
Q 001367 813 DAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 890 (1091)
Q Consensus 813 g~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 890 (1091)
|..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|..++-|+..++|+...........--.+.|+.
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 99999998 67899999999988776655667889999999 8899999999999999965543322333334568999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCc----ee------eeee------eeccCCCcCCCCCceEEEEcCCCCEEEEEe
Q 001367 891 LVFSDALNILVSSGGDAQIFVWDVDGWG----IQ------TCRS------LQTPDGVMTLAPSETHIQFHKDQTRFLLVH 954 (1091)
Q Consensus 891 l~~spdg~~las~s~Dg~i~vwd~~~~~----~~------~~~~------~~~~~~~~~~~~~i~~l~fs~dg~~la~~~ 954 (1091)
.+|+|+|++|..+.. |.-++|.+.-.. .. .... .....+..-..+++.+++|.|.|.+||+..
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999988764432 223344432211 00 0001 111112111225789999999999999953
Q ss_pred cC---------eEEEEEcCCcceeeeeecCC--ccCEEEEEEee---CCCEEEEEEcCCcEEEEeCC
Q 001367 955 ET---------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 955 d~---------~i~vwd~~~~~~~~~~~~~h--~~~v~~v~fs~---dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
.+ .|.+||....-.+.-.+.+- ......++|.| +|.+|..+=..|.+.-|++.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 32 36677766544333222221 22345677776 56677777667777766653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-12 Score=146.37 Aligned_cols=238 Identities=11% Similarity=0.117 Sum_probs=156.6
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC---CCEEEEEEeeCCcccce
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 433 (1091)
..|.+||...+.... +..+...+.+.+|||||+.||..+. +..|.+|++.+|+...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 368888887654332 3446678999999999999997642 4579999998875322
Q ss_pred eEEEeccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC-Ce
Q 001367 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK 510 (1091)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~ 510 (1091)
+....+.+..++|+|||+. ++++.+.+| .|.+||+.+++..+ +..+...+....| ++||+.|+..+.+ +.
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~w--SPDG~~I~f~s~~~g~ 310 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTW--FPDSQNLAYTSDQAGR 310 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEE--CCCCCEEEEEeCCCCC
Confidence 2223334557899999995 233334444 58999998887654 4334455667777 4567777766654 44
Q ss_pred EEEE--ecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 511 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 511 i~iw--d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
..+| |+..+.. ..+...........|+|||++++..+... +...|++||+.+++... +... .......|+|
T Consensus 311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~Sp 383 (429)
T PRK03629 311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAP 383 (429)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECC
Confidence 4555 5554433 23333344456789999999998876432 35679999998886543 3321 1234578999
Q ss_pred CCCEEEEEeCCCe---EEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 589 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
||+.++.++.++. +++++++ |.....+..+.+ .+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 9999999887654 6777874 444455554333 467788876
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-11 Score=129.60 Aligned_cols=549 Identities=11% Similarity=0.088 Sum_probs=310.2
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
...|++|+.... ++|+|+.||.++|-.+.+...-...+ -+...+...-..++.||++.|.-+.|+.+.+.|-++.
T Consensus 16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 788999999887 67999999999999987643221100 0111222223345899999999999999999999999
Q ss_pred CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-EEecCCCcceEEEeec
Q 001367 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~ 494 (1091)
.+|.|.||-+-.|.-.... .-......|.+++|+.||. .+.....||.|.|=.++..+.- +.+++ .....+.|
T Consensus 91 t~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~w- 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLW- 164 (1189)
T ss_pred CCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcch--heccceee-
Confidence 9999999999887654432 1123456789999999999 6777788888877654432211 11221 11223455
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCce-------e----eecCCCCcEEEEEE--------cCCCCEEEEEecCCCCce
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGAR-------V----DYDAPGLGCTRMAY--------SANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------~----~~~~~~~~i~~~~~--------s~d~~~l~~~~~~~~~~~ 555 (1091)
++|...++.+-..|.++++|.+..-.. . .+......+..+.| -||...++.+.. +|
T Consensus 165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG 239 (1189)
T KOG2041|consen 165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG 239 (1189)
T ss_pred -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence 456677788888899999986532111 1 11112223444554 257778888876 44
Q ss_pred EEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeeEEEEeCCCCCCCC
Q 001367 556 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1091)
Q Consensus 556 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1091)
.+.+..-.+ .+++..-.+ -.+....|+++|..+++++.+ +.|.++. .-|+.+.++..++. .|
T Consensus 240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--CI 311 (1189)
T ss_pred eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--ee
Confidence 455543332 233322222 357788999999999997743 2455554 34677777776655 68
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECCCC--------CeecccccccccceeeeeccccccccccccCCcccCCCCCCCC
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDV 697 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~ 697 (1091)
+.++|-..|-.++.+- |+.|++=++... ..+........+..++.|.........--.--.+.+..+..+-
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~eh 390 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREH 390 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheeccc
Confidence 8888887776666553 355655544432 1222222333333444443221110000000011111112222
Q ss_pred CcccccccccccccccccccCCc-----ccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccc
Q 001367 698 KPEISVEAENKSEVEKPLFARPS-----ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 772 (1091)
Q Consensus 698 ~~l~s~~~d~~i~~w~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 772 (1091)
-.++.-..|+.+.-++.-..... -|..+..+....-..|.-.-..-++..++.++.+ .+.+|.+...+......
T Consensus 391 CvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~ 469 (1189)
T KOG2041|consen 391 CVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLA 469 (1189)
T ss_pred EEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhh
Confidence 22333333344333321100000 0111111111112233333334455555555544 77888876655421111
Q ss_pred ---eeeccCCccccCCCCCceeeecC---CCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCe
Q 001367 773 ---ATTKVPPRLYQPRHGPQFMVNDT---TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA 845 (1091)
Q Consensus 773 ---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i 845 (1091)
........+=+..+|..-...+. +..|...+|.+++.| .+++..+- .|.|.-|.+.......... -+..+
T Consensus 470 ~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~ 546 (1189)
T KOG2041|consen 470 GVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSI 546 (1189)
T ss_pred hhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc-cCchh
Confidence 11111222233333421111111 123567788888875 46677776 6899999988877665554 45678
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecc---Ccceee-eeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q 001367 846 TSLAFNPHDNNVIAIGMDDSTILIYNAR---SSEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 914 (1091)
Q Consensus 846 ~~l~~s~~~~~~la~g~~dg~i~iwd~~---~~~~~~-~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~ 914 (1091)
..++..- +...+|+-..-|.+.+.|+. +|..+. .+......|+++.|..|...|..--.--.+.|++-
T Consensus 547 y~~~lNC-nstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 547 YSIKLNC-NSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred eeEeecc-CcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 8898888 77888888888999998886 344333 44445667999999887755543333334555543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=128.63 Aligned_cols=238 Identities=14% Similarity=0.099 Sum_probs=177.4
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
-..+|+|.||++|++ .+|++-....|.||.......-. ...++..|...|+.+.|+|....|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 345999999999998 67888888999999987765211 1233778999999999999999999
Q ss_pred EEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee----EEecCCCcce
Q 001367 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPV 488 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~v 488 (1091)
+|+.|...+||....+...++...+..|...++++.|+|.++ .+++|+.-..|.||=.+...-- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966666667777888999999999999999 7999999999999876644321 1223466789
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEec-----CCC-------------CceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLY-----DSL-------------GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~-----~~~-------------~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
.++.|+++ +-+++.|+.|+..+++.. +.. ....++....+.+..+.|+|+|..|+-.+-
T Consensus 150 ~sldWhpn--nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHPN--NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccCC--cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 99999764 468999999999999853 211 111233355668999999999999998875
Q ss_pred CCCceEEEEEecCCce-eeEEEecccccccceEEEEEcCCCCEEEEEeCC
Q 001367 551 KEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d 599 (1091)
+..+.+-|..... .+....... -+..++.|-.+ +.++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~---lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQ---LPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhcc---CCceeeEeecC-CceeecCCC
Confidence 5568888876654 233332222 45666666554 345555554
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-12 Score=137.64 Aligned_cols=285 Identities=14% Similarity=0.187 Sum_probs=206.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
+|...-+.+..||||+|++|+|...-.|++||+..-.+...+.+ ....|.-.-+|.|-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence 56668889999999999999999999999999987665543211 12455556666676777
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
+.-..|.+|.+..-- |.... ..++ ..-.+++++.-... |+.++....|+-++++.|+.+..|....+.++++
T Consensus 110 v~L~~DR~IefHak~-G~hy~--~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKY-GRHYR--TRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eEeecCceeeehhhc-Ceeee--eecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence 777788877664422 21111 0111 12234555544442 4444445578899999999999998888999999
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC------C-----cEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------L-----GCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~-----~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
..++.+ .+|++|+.+|.|..||.+.......+.... + .|+++.|+.+|-.+++|.. .|.+++|
T Consensus 182 ~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy 255 (703)
T KOG2321|consen 182 SINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY 255 (703)
T ss_pred eecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence 886543 589999999999999998876655443221 1 4899999999999999876 6679999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1091)
|+++.+++..-.... .-+|..+.|.+.+.. -+.......++|||-.+|+....+... ..++.+|+-|++.++++
T Consensus 256 DLRa~~pl~~kdh~~--e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGY--ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFFT 330 (703)
T ss_pred EcccCCceeecccCC--ccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc---CCcCceeeecCCceEEE
Confidence 999988765543222 467888999776332 233335567999999999998887643 35899999999999999
Q ss_pred EECCCeEEEEECCCC
Q 001367 640 IANENRIKILETPES 654 (1091)
Q Consensus 640 ~~~dg~i~iwd~~~~ 654 (1091)
+-.++.+..|-+...
T Consensus 331 Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 331 ANESSKMHTYYIPSL 345 (703)
T ss_pred ecCCCcceeEEcccc
Confidence 999988888876643
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-12 Score=145.75 Aligned_cols=237 Identities=13% Similarity=0.071 Sum_probs=160.8
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC---CCEEEEEEeeCCcccce
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 433 (1091)
..|.+||...+.... +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 478888875544322 5568889999999999999998763 468999999887542
Q ss_pred eEEEeccccCeeEEEEcCCCCceEEEEeeCCCc--EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec-CC-
Q 001367 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG- 509 (1091)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg- 509 (1091)
.+..+.+.+...+|+|||+. ++++.+.++. |.+||+.++.. ..+..+........|+ +||+.++..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence 34556677889999999995 3455665554 77789887765 4565566656667774 56777776653 33
Q ss_pred -eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 510 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 510 -~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
.|.+||+..+.... +......+....|+|||+.|+...... +...|.+||..++.. +.+.. . ..+....|+|
T Consensus 314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp 386 (435)
T PRK05137 314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP 386 (435)
T ss_pred CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence 57778876554433 333344566788999999998876432 356799999866543 33322 1 2456788999
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 589 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 589 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
||+.++..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 99998875532 3688888876654 3443221 355667766
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-11 Score=129.74 Aligned_cols=285 Identities=11% Similarity=0.129 Sum_probs=186.1
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE-
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 414 (1091)
.....++|++|+ ++|.+ .+..++|++..++..+.+ -....+.++.|||-|.+|.+=
T Consensus 36 ~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T~e 92 (566)
T KOG2315|consen 36 PCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLTWE 92 (566)
T ss_pred cceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccccc
Confidence 567889999998 65665 458899999988864432 122378999999999999863
Q ss_pred ----ECC-----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC
Q 001367 415 ----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 415 ----~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
..+ ..+.+|+++++.... .+..-...-++..|+.|.. ++.=-..+.+.+|++.+-+.+. -.-|.
T Consensus 93 ~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~~ 165 (566)
T KOG2315|consen 93 PWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLSV 165 (566)
T ss_pred ccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeeec
Confidence 122 347899999953322 1222111226899999987 3333335679999987643321 12367
Q ss_pred cceEEEeecccCCceEEEE-----EecCCeEEEEecCCCCceeeecC---CCCcEEEEEEcCCCCEEEEEec---C----
Q 001367 486 APVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGT---S---- 550 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~d~~~l~~~~~---~---- 550 (1091)
..|..+.+++.+.-..+++ .+.-+.++||.+.....-..... -...-..+.|++-|.-|++... +
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence 7788888887755555554 35566799997762221111110 1112235778887765443321 1
Q ss_pred -CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE--EeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 551 -KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 551 -~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
-.|+..+++.+++.......+.. .++|.++.|+|+++.+++ |-.-.++.|+|++ +.++..+... .=++
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg----pRN~ 316 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG----PRNT 316 (566)
T ss_pred cccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC----Cccc
Confidence 13466788888874444333332 479999999999987766 5578899999985 4555555432 3478
Q ss_pred EEEccCCCEEEEEECC---CeEEEEECCCCCeecc
Q 001367 628 ICFNKNGTLLAVIANE---NRIKILETPESNSVDA 659 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~ 659 (1091)
+-|+|.|++++.++-+ |.|.+||+.+.+.+..
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 9999999999988874 8899999887655543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-13 Score=138.09 Aligned_cols=278 Identities=10% Similarity=0.127 Sum_probs=185.6
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE-----CCCCCE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL 410 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----spdg~~ 410 (1091)
.++...++-.|++|..--+ ..+.+|+...+..+.. ++.+..+.+ ...+|-+| .|++--
T Consensus 125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~-------------pi~k~~y~g--t~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSK-------------PIDKREYKG--TSPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEecC--CeEEEEEccCcchhcc-------------chhhhcccC--CCCceecccccccCCCCcc
Confidence 4556666777776654333 6688999886544421 122222322 23344444 456778
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEe--ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
|..|-..|.|++.|....+..+ +.... -....|+++.|-|.+.. .++.+-.+|.++++|.. +....
T Consensus 188 llIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~ 255 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA 255 (636)
T ss_pred eEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence 8889889999999887633222 11111 13368999999998776 56667789999999852 11111
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
+...+..-+++..+......+. .+...+..+....+.|...+|+|||++||+.+. |+.++|+|..+.+++
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL 325 (636)
T ss_pred CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence 1112211223223322211110 111333344444558899999999999999986 888999999999888
Q ss_pred EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc----------------
Q 001367 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---------------- 632 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---------------- 632 (1091)
..++..- +...|++|+|||++|++|++|.-|.||.+..++.+..-.+| ...|..|+|.|
T Consensus 326 g~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH--kSWVs~VaFDpytt~~ee~~~~~~~~~ 400 (636)
T KOG2394|consen 326 GVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH--KSWVSVVAFDPYTTSTEEWNNFSGMDS 400 (636)
T ss_pred HHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc--ccceeeEeecccccccccccccccccc
Confidence 7777666 78999999999999999999999999999999988776555 45888888872
Q ss_pred -------------------C-------------CCEEEEEECCCeEEEEECCCCCee
Q 001367 633 -------------------N-------------GTLLAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 633 -------------------~-------------~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
+ .-++.+.+.|..+.+||+......
T Consensus 401 ~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 401 TFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred cccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 0 125677888999999999876443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-12 Score=123.51 Aligned_cols=241 Identities=12% Similarity=0.166 Sum_probs=168.4
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCC--CCeEEEEEcCCCCcEEE-EEeCC------CeEEEEec
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIA-IGMDD------STILIYNA 872 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~~la-~g~~d------g~i~iwd~ 872 (1091)
....+++|..|...++++.+...+||+.+-.+.....+.+. -.+..+-|-. ++|| +|+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEEEec
Confidence 34456999999999999999889999987644432222222 2333444432 3444 44433 48999996
Q ss_pred cCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 873 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 873 ~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
...+++.++. ...+|.++.+++| .|+.. -.+.|+||.....-.. ...+.+..... .+.+++=..+-.+||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~-l~~~et~~NPk----GlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL-LHVIETRSNPK----GLCSLCPTSNKSLLAF 153 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh-eeeeecccCCC----ceEeecCCCCceEEEc
Confidence 6667777776 6688999999876 45544 4677999999853311 12222222111 1222222233344444
Q ss_pred -E-ecCeEEEEEcCCcce-eeeeecCCccCEEEEEEeeCCCEEEEEEcCCc-EEEEeCCCCceEEEeecccccCCCCccc
Q 001367 953 -V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCL 1028 (1091)
Q Consensus 953 -~-~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1091)
| .-|+|+|-|+...+. ...+...|...|.+++.+-+|.++||+|..|+ |||||..+|+.++.++.... ..
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d------~A 227 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD------RA 227 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc------hh
Confidence 4 458999999987665 34557889999999999999999999999998 89999999999988873321 23
Q ss_pred ccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1029 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1029 ~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
.|+ +++|+| +..+|+++++.|+|++|.+.+..
T Consensus 228 ~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 355 789999 58999999999999999998755
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.3e-12 Score=129.56 Aligned_cols=280 Identities=14% Similarity=0.110 Sum_probs=186.1
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
-.-++..++|||.|+ +|++... ..|.+|.-..+..+.. + -...|..+.|||+++||.
T Consensus 31 ~~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~-------------------~--~~~~V~~~~fSP~~kYL~ 87 (561)
T COG5354 31 ENWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVR-------------------F--RHPDVKYLDFSPNEKYLV 87 (561)
T ss_pred cCcchhheeecCcch-heehhhc-cceEEccccchhheee-------------------e--ecCCceecccCcccceee
Confidence 445899999999998 5566544 5699999877765532 1 225799999999999999
Q ss_pred EEECCC---------------EEEEEEeeCCcccceeEEEeccccC--ee-EEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 413 VAYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 413 s~~~d~---------------~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
+=+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-+.+ +++-. -...++|+++ +
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t 160 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-T 160 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-C
Confidence 865433 48999999987654 34444443 44 688999888 44433 2346999997 4
Q ss_pred Ccee-EEecCC-CcceEEEeecccCCceEEEE-----EecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 475 GSRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 475 ~~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
+... ..+..- ...|....++|..++..|+. .+.++++++|.+.....+.........-..+.|.+.|++|++-
T Consensus 161 ~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 161 DNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred CccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEE
Confidence 4322 122111 24566777777766655554 3567889999988655555433333334567889999887754
Q ss_pred ec-------CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE--eCCCeEEEEECCCCeeEEEEeC
Q 001367 548 GT-------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 548 ~~-------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
.. +--|+..++++++..... ....... ++|...+|.|.++.+++. -.+..+.++|++.. +...++.
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe 315 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE 315 (561)
T ss_pred EEEeeecccceeccceEEEEeeccccc-ceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCC
Confidence 32 112456688888874433 2222323 799999999999887764 47888999998776 4444433
Q ss_pred CCCCCCCceEEEccCCCEEEEEECC---CeEEEEEC
Q 001367 619 GGGLPENPRICFNKNGTLLAVIANE---NRIKILET 651 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iwd~ 651 (1091)
.. =+.+.|+|.++++++++-| |.+.+|+.
T Consensus 316 ~~----rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 316 QK----RNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred cc----cccccccCcccEEEEecCCccccceEEecc
Confidence 22 3678999999999988765 44555543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.2e-09 Score=125.33 Aligned_cols=578 Identities=11% Similarity=0.111 Sum_probs=302.6
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEE----EcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLW----DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
..+.|.++.|-+|... ++.+..+|.|.+. +..+...-. ...-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 3468999999999874 4667788999999 554443322 22245799999999999
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEecccc-----CeeEEEEcCCCCceEEEEeeCCCcE-E-EEeCCCC-ceeEE
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG-----NVNDLAFSAPCKQISVITCGDDKTI-K-VWDAVTG-SRTYS 480 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~-----~v~~~~~s~d~~~~~l~s~~~d~~i-~-iwd~~~~-~~~~~ 480 (1091)
..||..+.++++.+-+-. -+.+. +..-+.. .-..+-|-....+ +-|+.-+.. + .=|.... .....
T Consensus 133 Ella~vT~~~~l~~mt~~-fd~i~---E~~l~~~~~~~~~~VsVGWGkKeTQ---F~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRD-FDPIS---EVPLDSDDFGESKHVSVGWGKKETQ---FHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred CEEEEEeCCCEEEEEecc-ceEEE---EeecCccccCCCceeeeccCcccCc---cCcchhhhhhhhccCCCCCccccCc
Confidence 999999999988776422 11111 1111110 1112333222111 001100000 0 0010000 00011
Q ss_pred ecCCCcceEEEeecccCCceEEEEEec---C---CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
+. +...-..++| .+||.++++.+. . ..+++|+-+ +..........+--.+++|.|.|+++++... ....
T Consensus 206 ~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~ 280 (928)
T PF04762_consen 206 LS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDR 280 (928)
T ss_pred cc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCC
Confidence 22 3333444555 789999998875 3 469999865 3322233333333457899999999998875 2335
Q ss_pred eEEEEEecCCceeeEEEeccc-ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeE--EEEeCCCCCCCCceEEEc
Q 001367 555 SFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s 631 (1091)
..|.+|.- +|-.-..|.... .....|..+.|++|+..|+..-.|. |.+|-..+.... +.+..... ..+..+.|+
T Consensus 281 ~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wd 357 (928)
T PF04762_consen 281 HDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWD 357 (928)
T ss_pred cEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEEC
Confidence 56777764 443333343321 1246789999999999999977655 999998887643 33333222 234569999
Q ss_pred cC-CCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 632 KN-GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 632 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
|. ...|.+.+.+|.+..++..-........ +|+..-.+..-....+.
T Consensus 358 pe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~--------------------------------~~~D~g~vaVIDG~~ll 405 (928)
T PF04762_consen 358 PEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS--------------------------------SPNDNGTVAVIDGNKLL 405 (928)
T ss_pred CCCCCEEEEEecCCcEEEEEEEEEEEecCCC--------------------------------CccCceEEEEEeCCeEE
Confidence 94 4567777777887766543110000000 11000000000001222
Q ss_pred ccccc---ccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCC
Q 001367 711 VEKPL---FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 787 (1091)
Q Consensus 711 ~w~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1091)
+-.+. ...+.....+. -...|..++|++++..+++...||.+.+|.++............. ......
T Consensus 406 lTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~ 475 (928)
T PF04762_consen 406 LTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL-----SSISLD 475 (928)
T ss_pred EecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh-----hhcccc
Confidence 22211 11111122222 246899999999999899999999999999765432110000000 000000
Q ss_pred CceeeecCCCCCCCCCeeEEEecCCCCEEEEEeC----CeEEEEEccCce---eEEEecCCCCCeEEEEEcCCCCcEEEE
Q 001367 788 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAI 860 (1091)
Q Consensus 788 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~~la~ 860 (1091)
. ... .........+..++|..+..+++.... ..+.+++....+ ...........+..+...+ +...++.
T Consensus 476 ~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 551 (928)
T PF04762_consen 476 S-MDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYI 551 (928)
T ss_pred c-ccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEE
Confidence 0 000 000013456778888888877776653 468888774332 2333333445565666665 4444666
Q ss_pred EeCCCeEEEEeccCcce-eeeeccccCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCC
Q 001367 861 GMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 937 (1091)
Q Consensus 861 g~~dg~i~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg--~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1091)
-..+|.+...+...... +..+..-...+..+.+.... ..++.-+..|.+++ .+ ..+. ..
T Consensus 552 q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~------~~la---------~~ 613 (928)
T PF04762_consen 552 QTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS------RLLA---------SN 613 (928)
T ss_pred EECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC------EEEe---------cC
Confidence 77899998776654322 22333222222222222221 14444455554443 21 1111 13
Q ss_pred ceEEEEcCCCCEEE-EEecCeEEEEEcCC-cceeeeeecCCcc-CEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceE
Q 001367 938 ETHIQFHKDQTRFL-LVHETHLAIYEAEE-LTCLKQWFPISSV-PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1012 (1091)
Q Consensus 938 i~~l~fs~dg~~la-~~~d~~i~vwd~~~-~~~~~~~~~~h~~-~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~ 1012 (1091)
+++.++ .+.+|+ +.....+++.++.. ...+......+.. .-..+.--..|..|+++--...=.|..++-|.+-
T Consensus 614 ~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 614 CTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred CceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEEcCCCchh
Confidence 555555 344554 46677788888871 1111111100000 0011222346778887765555567788887664
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=146.73 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=150.3
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEc--CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~--~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
....+.+..+...+.+.+|||||+.|+.+.. .+..|.+|++.+|+... +......+..
T Consensus 188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~ 247 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGA 247 (429)
T ss_pred CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCC
Confidence 3344556667778999999999997654432 24579999998886443 1122233456
Q ss_pred EEECCCCCEEEEE-ECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC-CCc--EEEEeCCCC
Q 001367 402 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVWDAVTG 475 (1091)
Q Consensus 402 l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~--i~iwd~~~~ 475 (1091)
++|||||++|+.. +.++ .|++||+.+++.. .+..+...+....|+|||+ .|+..+. ++. |.++|+.++
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCC
Confidence 8999999999875 3344 5899999887533 3444555688999999999 4544443 344 555577666
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
+. ..+..+........| ++||++++..+.+ ..|.+||++++.... +... .......|+|||+.|+..+.++.
T Consensus 322 ~~-~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 322 AP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred Ce-EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 54 334333344455666 4577777766543 358888988765443 2221 22346789999999998886443
Q ss_pred CceEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
...++++++. |...+.+.++. +.+...+|+|
T Consensus 397 -~~~l~~~~~~-G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 397 -GSVLNLVSTD-GRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred -ceEEEEEECC-CCCeEECccCC---CCcCCcccCC
Confidence 5568888884 44455666555 5677788877
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-09 Score=110.51 Aligned_cols=517 Identities=14% Similarity=0.120 Sum_probs=275.0
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEE----E--cCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLV----G--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llas----g--~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1091)
..+.+..|-+-|+...|+|||+.++.+ | ...+.+.+.+.+.|+..+..- + | ...
T Consensus 70 ~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTy-----------------f-G--r~f 129 (668)
T COG4946 70 KPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITY-----------------F-G--RRF 129 (668)
T ss_pred CeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEE-----------------e-c--ccc
Confidence 345667777899999999999976542 2 223557788888887665311 2 2 333
Q ss_pred EE-EEECCCCCEEEEEECCCE----EEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC---------
Q 001367 400 NR-VVWSPDGSLLGVAYSKHI----VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------- 465 (1091)
Q Consensus 400 ~~-l~~spdg~~las~~~d~~----i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--------- 465 (1091)
+. ..|+|||+.+++...-.- -.+|.+....... -.-.-++.+.+.+- ||. ++.|-.--
T Consensus 130 T~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~----e~LnlGpathiv~~-dg~---ivigRntydLP~WK~Yk 201 (668)
T COG4946 130 TRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKT----EPLNLGPATHIVIK-DGI---IVIGRNTYDLPHWKGYK 201 (668)
T ss_pred ceeeccCCCCCEEEEeccCCCcccceeeeEEccCCcee----eeccCCceeeEEEe-CCE---EEEccCcccCccccccc
Confidence 33 459999999988754321 2344444322100 11123455555553 343 33332110
Q ss_pred ---cEEEEeCCC-CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC--cEEEEEEcC
Q 001367 466 ---TIKVWDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSA 539 (1091)
Q Consensus 466 ---~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~ 539 (1091)
.=++|--.. |+....+-...+.|.+-.+. .++.-.....+|.=.+|..+-...-. ..|.. ...+=-.+.
T Consensus 202 GGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldGkDl--rrHTnFtdYY~R~~ns 276 (668)
T COG4946 202 GGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDGKDL--RRHTNFTDYYPRNANS 276 (668)
T ss_pred CCccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCCchh--hhcCCchhccccccCC
Confidence 123453222 22222222222222221111 11222233344443444332211111 11111 222334567
Q ss_pred CCCEEEEEecCCCCceEEEEEecCCceeeEEEeccccc-----ccceEE---EE-EcC-CCCEEEEEeCCCeEEEEECCC
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSV---VH-FDT-AKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~---v~-~~~-~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
||+.++... .+.|+++|..+......--+.... ...+.- +. |++ +|.+++..|. |...|.+...
T Consensus 277 DGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 277 DGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred CCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence 999888754 334999998876544332221100 001111 11 222 4667666654 5666666555
Q ss_pred CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC-eEEEEECCCCCeecccccccccceeeeeccccccccccccCCcc
Q 001367 610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1091)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~ 688 (1091)
+-.++.-. ...|.-..+..+++-++.|..|| .+-|++..+++.-...
T Consensus 351 ~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---------------------------- 398 (668)
T COG4946 351 GYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---------------------------- 398 (668)
T ss_pred CeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee----------------------------
Confidence 54443321 12366666777777888999988 8899988766322111
Q ss_pred cCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccc
Q 001367 689 SNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 768 (1091)
Q Consensus 689 ~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~ 768 (1091)
..-+.|.++..+++|+.++++.....+.+.|++....
T Consensus 399 ------------------------------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv- 435 (668)
T COG4946 399 ------------------------------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV- 435 (668)
T ss_pred ------------------------------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-
Confidence 1345788899999999888888888888877654421
Q ss_pred cccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-C----CeEEEEEccCceeEEEecCCCC
Q 001367 769 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----GVISLYIVMTFKTILTIMPPSP 843 (1091)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d----g~i~iwd~~~~~~~~~~~~~~~ 843 (1091)
.+ . ......-|+.++++|+++++|.+- + ..|+++|+.+++....-. +..
T Consensus 436 ---------------------~~-i---dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 436 ---------------------RL-I---DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred ---------------------eE-e---cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 11 1 112566789999999999999986 3 459999999888665433 444
Q ss_pred CeEEEEEcCCCCcEEEEEeC-------CCeEEEEeccCcceeeeeccccCCeEEEE----ECCCCCEEE-EEeCCCcEEE
Q 001367 844 TATSLAFNPHDNNVIAIGMD-------DSTILIYNARSSEVISKLEGHSKRVTGLV----FSDALNILV-SSGGDAQIFV 911 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~-------dg~i~iwd~~~~~~~~~l~~h~~~V~~l~----~spdg~~la-s~s~Dg~i~v 911 (1091)
.-.+-||.| ++++|..-+. |..+.=+... .|+.+-..+. .||-.+..- .-+.+|.+-+
T Consensus 490 ~DfsPaFD~-d~ryLYfLs~RsLdPs~Drv~fnf~f~---------~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dl 559 (668)
T COG4946 490 YDFSPAFDP-DGRYLYFLSARSLDPSNDRVIFNFSFQ---------RVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDL 559 (668)
T ss_pred cccCcccCC-CCcEEEEEeccccCCCCCeeEEEEEEe---------eeccceEEEecCCCCChhhcCchhcCccccceeh
Confidence 556778999 8888776542 2222222221 1222111110 122222211 1233444433
Q ss_pred EEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-------------E--ecCeEEEEEcCCcceeeeeecCC
Q 001367 912 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-------------V--HETHLAIYEAEELTCLKQWFPIS 976 (1091)
Q Consensus 912 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-------------~--~d~~i~vwd~~~~~~~~~~~~~h 976 (1091)
=+++.. ..++..-++. -.+++=-.+|+.+.- + .-|.+.+||+++.+.-..
T Consensus 560 e~ie~r----~eP~pVee~d------Y~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~----- 624 (668)
T COG4946 560 EGIEDR----VEPFPVEEGD------YRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY----- 624 (668)
T ss_pred hhhccc----ccccccCccc------eeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH-----
Confidence 222221 1112221111 112222233332221 1 236788999887654322
Q ss_pred ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 977 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 977 ~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
...+.++..|+||+.+.. -.||.+++++++.
T Consensus 625 k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 625 KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 457899999999999888 6899999999876
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.6e-14 Score=143.75 Aligned_cols=268 Identities=16% Similarity=0.166 Sum_probs=211.1
Q ss_pred CccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
......+.++.+|+.|+.|+..|.|..+|+.++.... ++. -...|.++.|..+.+ +++ ......++||| ..|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~A-VAQK~y~yvYD-~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFA-VAQKKYVYVYD-NNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHH-hhhhceEEEec-CCC
Confidence 4466789999999999999999999999999986544 222 234689999998877 454 44577899999 888
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
..++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++....+....+.+..++-+|-+..+-.|.. +|
T Consensus 201 tElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG 273 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG 273 (545)
T ss_pred cEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence 889888755 467778886654 57888999999999999999999888888889999999998888877765 77
Q ss_pred EEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC
Q 001367 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1091)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1091)
+|.+|...+.+++..+..|. ++|.++++.++|.++++++.|..++|||++....+.++.... ....+++|..|.
T Consensus 274 tVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkgl 347 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKGL 347 (545)
T ss_pred eEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Cccccccccccc
Confidence 89999999999998888888 999999999999999999999999999999988777766522 357788887663
Q ss_pred EEEEEECCCeEEEEECCCC-----CeecccccccccceeeeeccccccccccccCC
Q 001367 636 LLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1091)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g 686 (1091)
||.+ ....+.||.-... ........-...|..+.|+|.-.++++|-..|
T Consensus 348 -LA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 348 -LALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred -eeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4443 3457899953321 11111112234788999999988888876544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-12 Score=145.55 Aligned_cols=238 Identities=16% Similarity=0.115 Sum_probs=157.2
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccce
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQ 433 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~ 433 (1091)
.+|.+||...+.... +..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468899986543321 44577889999999999999988643 47999999887532
Q ss_pred eEEEeccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec-CCe
Q 001367 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK 510 (1091)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~ 510 (1091)
.+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+| ++||+.++..+. +|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~--spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTW--APDGKSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEE--CCCCCEEEEEECCCCC
Confidence 23344455668899999995 334555555 699999988875 445555555566777 456777776653 444
Q ss_pred --EEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 511 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 511 --i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
|.++++.+++... +..........+|+|||++++..... .+...|.+||+.+++.. .+.. . .......|+|
T Consensus 316 ~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~-~---~~~~~p~~sp 388 (433)
T PRK04922 316 PQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTP-G---SLDESPSFAP 388 (433)
T ss_pred ceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCC-C---CCCCCceECC
Confidence 6666665554332 22233344568999999999887542 23557999999888755 3322 1 1234568999
Q ss_pred CCCEEEEEeC---CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 589 AKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 589 ~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
||++++..+. .+.|++++...+ ....+..+.+ .+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCC--CCCCCccCC
Confidence 9999887664 346888888543 4444443322 356667765
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-12 Score=143.21 Aligned_cols=223 Identities=14% Similarity=0.117 Sum_probs=146.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
+..+...+.+.+|||||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577889999999999999987643 469999999886432 3334455678999999995 344667777766
Q ss_pred EEe--CCCCceeEEecCCCcceEEEeecccCCceEEEEEec-CCeEEEEecC--CCCceeeecCCCCcEEEEEEcCCCCE
Q 001367 469 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR 543 (1091)
Q Consensus 469 iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~s~d~~~ 543 (1091)
||. +.++. ...+..+........| ++||+.++..+. +|...+|.++ .+... .+...........|+|||++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~w--SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFF--SPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEE--cCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCE
Confidence 665 44443 5566556555666677 457777766554 4666777654 33322 22222333446789999999
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeEEEEeCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~ 620 (1091)
++..+..+ +...|++||+.+++....... .......|+||++.|+.++.++ .+++.+. ++.....+..+.
T Consensus 342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 98776432 345799999988875433322 2235678999999998876443 3556666 455555554433
Q ss_pred CCCCCceEEEcc
Q 001367 621 GLPENPRICFNK 632 (1091)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1091)
+ .+...+|+|
T Consensus 415 g--~~~~p~wsp 424 (427)
T PRK02889 415 G--DVREPSWGP 424 (427)
T ss_pred C--CCCCCccCC
Confidence 2 456677776
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=140.80 Aligned_cols=273 Identities=18% Similarity=0.171 Sum_probs=210.4
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
.....+.|+.+|++| +.|+..|.|..+|+.++.+..... -...|..+.|-.+.+++|++
T Consensus 130 FGPY~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCccEE-EecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh
Confidence 377889999999965 566777999999999998876532 23688999999999999998
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
- ..-++|||-..- .+. .++.| ..|..+.|.|--- +|++++..|.++--|+.+|+.+..+....+.+..++-+
T Consensus 189 Q-K~y~yvYD~~Gt-ElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 189 Q-KKYVYVYDNNGT-ELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred h-hceEEEecCCCc-EEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 4 456999997653 232 44444 4689999999765 89999999999999999999999998888888877765
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecc
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1091)
|- ...+-.|...|+|.+|.....+.+..+..|.++|.++++.++|+++++.+. |..+.|||++.-..+.++..
T Consensus 261 P~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 261 PY--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred Cc--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-
Confidence 54 357888999999999999999999999999999999999999999999987 66799999998776666655
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCe--eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEE
Q 001367 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1091)
Q Consensus 575 ~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1091)
. .+...+++|..| +++.+....|.||. .-.+. .-..+-.|.-...|..+.|.|-...|.+|...|--.+
T Consensus 334 p---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 334 P---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred C---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 2 456778887654 56666667899994 32221 1111112222236889999998777877766554333
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-12 Score=146.35 Aligned_cols=230 Identities=15% Similarity=0.144 Sum_probs=150.2
Q ss_pred chheeeecccCCCCcEEEEEcCCCceEEEEEcC--CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE
Q 001367 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1091)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~--dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1091)
.....+.+..|...+.+.+|||||++++.+... +..|.+||+.+|+... +..+.+...
T Consensus 192 ~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~ 251 (433)
T PRK04922 192 DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGING 251 (433)
T ss_pred CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCcc
Confidence 344556677777799999999999966544322 3469999998887543 223344556
Q ss_pred EEEECCCCCEEEEE-ECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCCc--EEEEeCCC
Q 001367 401 RVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVWDAVT 474 (1091)
Q Consensus 401 ~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~--i~iwd~~~ 474 (1091)
+++|||||+.|+.. +.++ .|++||+.+++.. .+..+.......+|+|||++ ++..+ .++. |.++|+.+
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCC
Confidence 78999999988754 4444 6999999887532 34455555678899999994 54444 4444 77777777
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCC---eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
++.. .+..+.......+| +++|++++..+.++ .|.+||+.++.... +. +........|+|||++++.....
T Consensus 326 g~~~-~lt~~g~~~~~~~~--SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~~- 399 (433)
T PRK04922 326 GSAE-RLTFQGNYNARASV--SPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATRE- 399 (433)
T ss_pred CCeE-EeecCCCCccCEEE--CCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEec-
Confidence 6543 23223333445667 45677777665433 58999987766543 22 22234567899999998887654
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
.+...|++++...+ ..+.+..+. +.+...+|+|
T Consensus 400 ~g~~~L~~~~~~g~-~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 400 GGRGVLAAVSTDGR-VRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred CCceEEEEEECCCC-ceEEcccCC---CCCCCCccCC
Confidence 34667999998544 344444333 4556666765
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-12 Score=128.13 Aligned_cols=272 Identities=13% Similarity=0.126 Sum_probs=194.3
Q ss_pred CCCcEEEEEcCCCce-EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 334 SSSPMSMDFHPVQHT-LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~-llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
...|+.++|--|++. ++...+.|..+.......+..... +||+.. ......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence 447888888877654 333333666677777666655542 233221 33345666666654 34677
Q ss_pred EEECCCEEEEEEeeCCcccc-eeEEEeccccCeeEEEEcCCCCceEEEEeeCC--CcEEEEeCCCCceeEEecCC-----
Q 001367 413 VAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH----- 484 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~----- 484 (1091)
+|-.+|.+.+|..+.+..-. .+..+..+ ..+..+.-++.... ++++||.. ..+.|||++..+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 78889999999998554211 11123323 45667777776664 67779988 88999999988666554321
Q ss_pred --C--cceEEEeecccCCceEEEEEecCCeEEEEecCCCCce-eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 485 --G--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 485 --~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
. -.++++.|.+..+...|++++.-+.+++||.+.+... ..+.....+++++...|++++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1 2345666765544689999999999999999876544 467778889999999999999999865 566999
Q ss_pred EecCCceeeEE-EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 560 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 560 wd~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
+|.+++..... +.+.. +.|+++..+|..++++++|-|..+||+|+++.+++........ .+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecC
Confidence 99999998877 77777 8999999999999999999999999999999777766554433 45555544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-12 Score=144.52 Aligned_cols=231 Identities=19% Similarity=0.187 Sum_probs=147.7
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCC--CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~d--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
....+.+..+.+.+.+.+|||||+.++.+...+ ..|.+||+.+|+... +....+.+.+
T Consensus 185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~ 244 (427)
T PRK02889 185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSA 244 (427)
T ss_pred CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence 344455667778999999999999665444333 459999999887543 2223345678
Q ss_pred EEECCCCCEEEE-EECCCEEEEEEe--eCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC--CCCc
Q 001367 402 VVWSPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA--VTGS 476 (1091)
Q Consensus 402 l~~spdg~~las-~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~--~~~~ 476 (1091)
.+|||||+.|+. .+.++...||.+ .++. .+ .+..+...+....|+|||+. +++++..++...||.+ .++.
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCc
Confidence 999999999875 566776666655 4433 22 34455556678899999995 2333434566666654 4444
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCC---eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.. .+..+........| ++||++++..+.++ .|.+||+.+++....... .......|+|||+.|+.....+ +
T Consensus 320 ~~-~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~-g 393 (427)
T PRK02889 320 AQ-RVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQG-G 393 (427)
T ss_pred eE-EEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecC-C
Confidence 32 22222222334556 55778888776554 599999987765433222 2346789999999999887643 3
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCC
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 589 (1091)
...+++.+. .+...+.+..+. +.+...+|+|-
T Consensus 394 ~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~ 425 (427)
T PRK02889 394 RSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGPF 425 (427)
T ss_pred CEEEEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence 566777777 455555555433 45666677763
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-10 Score=122.57 Aligned_cols=209 Identities=13% Similarity=0.191 Sum_probs=134.3
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEEccC-ceeEEE---e----------cCCCCCeEEEEEcCCCCcEEEEEe-CCC
Q 001367 803 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGM-DDS 865 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~~~~~la~g~-~dg 865 (1091)
....++++|++++|+++. +|.|.++++.. +..... + ........++.|+| +++++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345677788888888776 57788888765 333222 1 11235678999999 787777654 334
Q ss_pred eEEEEeccCcc--ee--eeec-cccCCeEEEEECCCCCEEEEEe-CCCcEEEEEcC--CCceeeeeeeeccCCCcCCCCC
Q 001367 866 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS 937 (1091)
Q Consensus 866 ~i~iwd~~~~~--~~--~~l~-~h~~~V~~l~~spdg~~las~s-~Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~ 937 (1091)
.|++|++.... .. ..+. .....-..++|+||++++.... .+++|.++++. ++.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 21 2222 2334578999999999886655 57889999998 5544433334433221111125
Q ss_pred ceEEEEcCCCCEEEEE--ecCeEEEEEcC--Ccce--eeeeecCCccCEEEEEEeeCCCEEEEEE-cCCcEEEEeC--CC
Q 001367 938 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SN 1008 (1091)
Q Consensus 938 i~~l~fs~dg~~la~~--~d~~i~vwd~~--~~~~--~~~~~~~h~~~v~~v~fs~dg~~l~t~~-~dg~v~iwd~--~~ 1008 (1091)
...++++|||++|.++ ..+.|.+|++. +++. +..+.. .....+.++++|||++|+++. .++.|.+|++ .+
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 7899999999999986 45689999983 2332 222222 244578999999999999887 4568999876 46
Q ss_pred CceEE
Q 001367 1009 LEVQC 1013 (1091)
Q Consensus 1009 ~~~~~ 1013 (1091)
|.+..
T Consensus 326 G~l~~ 330 (345)
T PF10282_consen 326 GKLTP 330 (345)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 66553
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-10 Score=119.81 Aligned_cols=366 Identities=11% Similarity=0.142 Sum_probs=223.5
Q ss_pred EEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCC
Q 001367 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1091)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 591 (1091)
.+|+..+......+....-++..+++||.|.+|++.... .|.+|+-..+..+..+.. ..|..+.|+|.++
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~k 84 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEK 84 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccc
Confidence 345444444444444456688899999999999987642 399999887775555554 4689999999999
Q ss_pred EEEEEeCC---------------CeEEEEECCCCeeEEEEeCCCCCCCCc-eEEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 592 QILAAGDD---------------HVIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 592 ~l~~~s~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
+|.+=+.. ..+.+||..+|..+..+.......... -+.|+-+.+++|-. ....++|+++....
T Consensus 85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~ 163 (561)
T COG5354 85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNI 163 (561)
T ss_pred eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCcc
Confidence 99985433 349999999999999887654422233 67889888877755 34578999863221
Q ss_pred eeccccc-ccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccc
Q 001367 656 SVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 734 (1091)
Q Consensus 656 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 734 (1091)
....+.. ....+....++|.+. ...+-.|
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n----------------------------~~~la~~---------------------- 193 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGN----------------------------HDELAYW---------------------- 193 (561)
T ss_pred ccCchhhccccceeeEEecCCCC----------------------------CceEEEE----------------------
Confidence 1111110 012222223322110 0001111
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.|.. .+..+.+++|.++.+.. +.+..+ ....-..+.+.+.|+
T Consensus 194 -------tPEk-----~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~qLkW~~~g~ 235 (561)
T COG5354 194 -------TPEK-----LNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGVQLKWQVLGK 235 (561)
T ss_pred -------cccc-----CCCCcEEEEEEccCCCe----------------------eeeeee----EeecccEEEEecCCc
Confidence 1110 12245566666553321 111111 011112344555555
Q ss_pred EEEEE------------eCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEE--eCCCeEEEEeccCcceeee
Q 001367 815 YLFSA------------SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG--MDDSTILIYNARSSEVISK 880 (1091)
Q Consensus 815 ~la~~------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g--~~dg~i~iwd~~~~~~~~~ 880 (1091)
++..- +...+.|+++....+.... ...++|...+|.| .++.+++. -.+-.+.++|+... ....
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~ 312 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY 312 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecc-cCCceeEEecccccceeecccccc-eEEe
Confidence 54431 1256888888744333332 5678999999999 55544443 47789999999854 4333
Q ss_pred eccccCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE----
Q 001367 881 LEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---- 953 (1091)
Q Consensus 881 l~~h~~~V~~l~~spdg~~las~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~---- 953 (1091)
+. ..+=..+.|||.+++++.++-| |.|.+||..+.- .+.....+. ..+.+.|||||.++-+.
T Consensus 313 ~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 313 FP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred cC--CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCceEEEecCCCc
Confidence 32 3344568999999999998876 579999988733 233233332 24677899999999873
Q ss_pred ---ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCC
Q 001367 954 ---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 999 (1091)
Q Consensus 954 ---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg 999 (1091)
.|..+.|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 382 k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 382 KLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 3668999998644332 456678889898888777664
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-13 Score=128.41 Aligned_cols=171 Identities=20% Similarity=0.258 Sum_probs=129.8
Q ss_pred chhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhccCC--CcCCccccch
Q 001367 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFT--KVDDNRYSTK 71 (1091)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~ 71 (1091)
..++|+.|||++||-.+||.++|+.+.+|+|+... -..+|.+|..|+.++|+..++++- .++.+ + .
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n--~-~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN--R-E 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc--h-h
Confidence 45789999999999999999999999999999661 477899999999999999999872 23333 2 2
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC-ChHHHHHHHHHHHH
Q 001367 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD-ALSARKNMMLELKQ 150 (1091)
Q Consensus 72 ~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~r~~l~~~l~~ 150 (1091)
+.|.+++|+++|++..+...+|++|+|++|.|.+..+++.++.|..+|.+..++..+.-.. ..- ....|.++-+.++.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~-~~l~~~s~R~kvA~~vN~ 179 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPS-AELLSQSLRQKVASEVNS 179 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcH-HHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999888889999999888876653332110 000 12346666666666
Q ss_pred hhhcCccccccccCCCcchHHHHHHHHHHHHHHHh
Q 001367 151 IIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHV 185 (1091)
Q Consensus 151 ~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~ 185 (1091)
.|-...- . --..+|..||..-+..|..
T Consensus 180 aiL~~~~---~-----~~~~~l~~llk~~~~~~~~ 206 (228)
T KOG2659|consen 180 AILASQE---H-----ESEPKLPFLLKLISWAQEE 206 (228)
T ss_pred HHHHHhc---c-----cccchHHHHHHHHHHHHHH
Confidence 5543211 0 1256888888666666643
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=140.54 Aligned_cols=230 Identities=14% Similarity=0.101 Sum_probs=151.6
Q ss_pred chheeeecccCCCCcEEEEEcCCCceEEEEEc--CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE
Q 001367 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1091)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~fspdg~~llasg~--~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1091)
.....+.+..|...+.+.+|||||++|+.+.. .+..|.+||+.+|+... +..+.+.+.
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~ 249 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTF 249 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCccc
Confidence 34455667788889999999999996655442 24689999999886542 334566778
Q ss_pred EEEECCCCCEEEEE-ECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCC--cEEEEeCCC
Q 001367 401 RVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVT 474 (1091)
Q Consensus 401 ~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~--~i~iwd~~~ 474 (1091)
+.+|||||+.|+.. +.++ .|++||+.++... .+..+.......+|+|||+. ++..+ .++ .|.+||+.+
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCC
Confidence 89999999988754 4444 4778888876532 35556666778999999995 44443 333 688889776
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
++. +.+..+...+....| +++|+.|+..+.+ ..|.+||+...... .+.. ...+..+.|+|||+.|+..+...
T Consensus 324 ~~~-~~lt~~~~~~~~~~~--SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 324 SNP-RRISFGGGRYSTPVW--SPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred CCe-EEeecCCCcccCeEE--CCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEEccC
Confidence 654 344334445556667 4567777776543 35778887554432 2222 23466789999999998766533
Q ss_pred CCc--eEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 552 EGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 552 ~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
... ..++++|+..+.. +.+.. . ..+...+|+|
T Consensus 399 ~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 399 GSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred CCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 221 4688889876654 33332 2 3355556665
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-10 Score=111.49 Aligned_cols=281 Identities=11% Similarity=0.107 Sum_probs=182.3
Q ss_pred ccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC---ceEEEeecCCcccccccceeeccCCccc
Q 001367 706 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY 782 (1091)
Q Consensus 706 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~ 782 (1091)
+.-|.+|+++......... .........+-++++|+++.|.++..+ |.+.-|.++
T Consensus 15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------- 72 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------- 72 (346)
T ss_pred CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc-------------------
Confidence 3567888877332211111 112255678889999999999888765 666666644
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccC-ceeEEE--ecCCCCC----------eEE
Q 001367 783 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS 847 (1091)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 847 (1091)
..+|.......... ...+...++++++|++++++. .|.|.++-++. |..... ...|.+. +..
T Consensus 73 -~~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 73 -PDDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred -CCCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 33333111111111 233448899999999999998 58999999865 433221 1113322 788
Q ss_pred EEEcCCCCcEEEEEeC-CCeEEEEeccCcceeeeec---cccCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC--Ccee
Q 001367 848 LAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ 920 (1091)
Q Consensus 848 l~~s~~~~~~la~g~~-dg~i~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~las~s~-Dg~i~vwd~~~--~~~~ 920 (1091)
..|.| ++++|++.+- --.|.+|++..|++...-. .....-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 8888887652 2379999999886532211 23345788999999999776654 89999999988 4444
Q ss_pred eeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecC--eEEEEEcCC--ccee-eeeecCCccCEEEEEEeeCCCEEEEE
Q 001367 921 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET--HLAIYEAEE--LTCL-KQWFPISSVPISQATFSCDCRMVFTS 995 (1091)
Q Consensus 921 ~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~--~i~vwd~~~--~~~~-~~~~~~h~~~v~~v~fs~dg~~l~t~ 995 (1091)
..+.+..+........+..++..++||++|.++..+ .|.+|.+.. ++.. ......+....+...|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 333444433333333567889999999999997543 677777653 3221 12223335557889999999999988
Q ss_pred EcCC-cEEEEeCC--CCceE
Q 001367 996 FVDG-TLSIHEAS--NLEVQ 1012 (1091)
Q Consensus 996 ~~dg-~v~iwd~~--~~~~~ 1012 (1091)
..++ .|.+|..+ +|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 8764 58888665 44443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=129.93 Aligned_cols=278 Identities=12% Similarity=0.105 Sum_probs=198.3
Q ss_pred CCCCCcc-cccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccc
Q 001367 694 KEDVKPE-ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 772 (1091)
Q Consensus 694 s~~~~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 772 (1091)
+|||+++ ++|..--.|++||+.. ..+.+........|.-...+.|-..++....|..|.+..
T Consensus 60 s~DGqY~lAtG~YKP~ikvydlan------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa----------- 122 (703)
T KOG2321|consen 60 SPDGQYLLATGTYKPQIKVYDLAN------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA----------- 122 (703)
T ss_pred cCCCcEEEEecccCCceEEEEccc------ceeeeeecccccceeEEEeccchhhheEeecCceeeehh-----------
Confidence 8888886 5666777899999762 222222222334455555566655566666666665422
Q ss_pred eeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEec-CCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEc
Q 001367 773 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 851 (1091)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 851 (1091)
..|.. ....+ ...-..++++ |...++++|+...|.-++++.|.-+..+....+.+.++..+
T Consensus 123 ------------k~G~h-y~~RI-----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in 184 (703)
T KOG2321|consen 123 ------------KYGRH-YRTRI-----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN 184 (703)
T ss_pred ------------hcCee-eeeec-----CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec
Confidence 11110 01111 1122344554 45567777778889999999999999999888999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEeccCcceeeeec------cccC-----CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee
Q 001367 852 PHDNNVIAIGMDDSTILIYNARSSEVISKLE------GHSK-----RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 920 (1091)
Q Consensus 852 ~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~------~h~~-----~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~ 920 (1091)
+ -..+|++|+.+|.|.+||..+...+..+. .|.+ .|+++.|+.||-.+++|+.+|.|.|||+.+.+.
T Consensus 185 ~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p- 262 (703)
T KOG2321|consen 185 E-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP- 262 (703)
T ss_pred C-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-
Confidence 9 78899999999999999998876555443 2333 499999999999999999999999999998541
Q ss_pred eeeeeeccCCCcCCCCCceEEEEcCC--CCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC
Q 001367 921 TCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 998 (1091)
Q Consensus 921 ~~~~~~~~~~~~~~~~~i~~l~fs~d--g~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d 998 (1091)
..++..... .+|..+.|-+. +..+++.....++|||-.+|+....... ...+..+|+-|++.+++++-.+
T Consensus 263 --l~~kdh~~e----~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 263 --LLVKDHGYE----LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred --eeecccCCc----cceeeecccccCCCceEEecchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCC
Confidence 222222222 36889999765 5567777778899999999998887554 4569999999999999999999
Q ss_pred CcEEEEeCCCCceEEEee
Q 001367 999 GTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 999 g~v~iwd~~~~~~~~~~~ 1016 (1091)
+.+..|=++.....-+|.
T Consensus 335 ~~m~~yyiP~LGPaPrWC 352 (703)
T KOG2321|consen 335 SKMHTYYIPSLGPAPRWC 352 (703)
T ss_pred CcceeEEccccCCCchhh
Confidence 888888877765554443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-09 Score=113.50 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=129.4
Q ss_pred eEEEecCCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC-ccee-e
Q 001367 805 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S 879 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~-~~~~-~ 879 (1091)
..+++||||+++.+.. +..|.+.|+.+++.+.++..+. ...-...++ +. +. +-+.||......+.+ |+.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEe
Confidence 3567888888888765 5789999999999988887533 222222222 22 22 223444444433322 2211 1
Q ss_pred ---eeccccCCeE-EEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCc----CCCCCceEEEEcCCCCEE
Q 001367 880 ---KLEGHSKRVT-GLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRF 950 (1091)
Q Consensus 880 ---~l~~h~~~V~-~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~l~fs~dg~~l 950 (1091)
.+.+-..++. .-.|++ ||+++..... |+|.+-|+.+........+....... -.+....-+++++||+.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111001100 014455 8888876665 99999998765544333333321110 011344559999999988
Q ss_pred EEEe---c--------CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCC-EEEEEE-cCCcEEEEeCCCCceEEEee
Q 001367 951 LLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 951 a~~~---d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~-~l~t~~-~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
.+.. . +.|.++|..+++.+..+..+ ..+..++|||||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8732 1 47999999999999987765 4789999999999 777665 57889999999999998774
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-11 Score=120.20 Aligned_cols=336 Identities=14% Similarity=0.187 Sum_probs=205.8
Q ss_pred eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCe
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1091)
.++.++|+. ..++....-|..+.+++.+.|.++++|- .+.++.-..+.... ...+.++.+.++...|++|-.+|+
T Consensus 16 ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 16 LLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred hhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecce
Confidence 445666766 7777777788888999999999999994 45555544443322 246789999999999999999999
Q ss_pred EEEEECCCC----CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcc
Q 001367 646 IKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 721 (1091)
Q Consensus 646 i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~ 721 (1091)
+.-+.+... ...+....|...+..+-|+ .....+++.+.|..+
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~---------------------~~~e~V~s~~~dk~~------------ 138 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFS---------------------LTHEWVLSTGKDKQF------------ 138 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEec---------------------CCceeEEEeccccce------------
Confidence 998876543 3334444566666655552 223344444433221
Q ss_pred cceeecCCccccccEEEEEEecC---CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCC
Q 001367 722 CQSLLLPSKVKANKISRLTYNNG---GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 798 (1091)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~~s~d---g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1091)
.-.++-.+ |.++..+-.
T Consensus 139 ---------------~~hc~e~~~~lg~Y~~~~~~--------------------------------------------- 158 (404)
T KOG1409|consen 139 ---------------AWHCTESGNRLGGYNFETPA--------------------------------------------- 158 (404)
T ss_pred ---------------EEEeeccCCcccceEeeccC---------------------------------------------
Confidence 00011000 001100000
Q ss_pred CCCCCeeEEEecCCCCEEEEEe-CCeEEEE--EccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 799 NSQEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~~la~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
+++.+ |-.+...|. .|.|.+- .......+.++.+|...+++++|.+ ...+|.+|..|..+.+||+...
T Consensus 159 ------t~~~~--d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 159 ------SALQF--DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred ------CCCce--eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCC
Confidence 00000 000122222 2333332 2245567788999999999999999 8899999999999999999866
Q ss_pred ce-eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec-------------------------cC
Q 001367 876 EV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT-------------------------PD 929 (1091)
Q Consensus 876 ~~-~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~-------------------------~~ 929 (1091)
+- ...+.+|.+.|..+...+--+.|.+++.||.|.+|+.+.........+.. ..
T Consensus 230 ~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~ 309 (404)
T KOG1409|consen 230 KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQ 309 (404)
T ss_pred cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhh
Confidence 54 46788999999999998888999999999999999987643222110000 00
Q ss_pred CCcCCC-CCceEEEEcCCCCEEEEEecCeEEEEEcCCcce----eeeeecCC--ccCEEEEEEeeCCCEEEEEEcCCcEE
Q 001367 930 GVMTLA-PSETHIQFHKDQTRFLLVHETHLAIYEAEELTC----LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLS 1002 (1091)
Q Consensus 930 ~~~~~~-~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~----~~~~~~~h--~~~v~~v~fs~dg~~l~t~~~dg~v~ 1002 (1091)
-|-... ..+...+-|.-..+...+.+-.+++.|...... ...+...| ...|+.+.+-.+-.+|+|+|.|..|.
T Consensus 310 h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~ 389 (404)
T KOG1409|consen 310 HHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIK 389 (404)
T ss_pred hhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEE
Confidence 000000 111112222222222334455566655321110 01122234 45788999998889999999999999
Q ss_pred EEeCCC
Q 001367 1003 IHEASN 1008 (1091)
Q Consensus 1003 iwd~~~ 1008 (1091)
|||+.+
T Consensus 390 iwd~~~ 395 (404)
T KOG1409|consen 390 IWDVRS 395 (404)
T ss_pred EEechh
Confidence 999865
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-10 Score=118.87 Aligned_cols=317 Identities=13% Similarity=0.175 Sum_probs=195.4
Q ss_pred EEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-----------CCC
Q 001367 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DDH 600 (1091)
Q Consensus 532 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-----------~dg 600 (1091)
-+-+.|||.|.+|++-...| |.+|--.+-..++.|.. ..|.-+.|||..++|++-+ +..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 45689999999999987533 89998776666666653 4688999999999999854 225
Q ss_pred eEEEEECCCCeeEEEEeCCCC-CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccc
Q 001367 601 VIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1091)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1091)
.++|||+.+|.....+..... ...-.-+.||.|++++|.... ..|.||+...-..+..-..
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl----------------- 344 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL----------------- 344 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc-----------------
Confidence 799999999999988876322 223356789999999998877 4688887664222111000
Q ss_pred cccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEE
Q 001367 680 GAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 759 (1091)
Q Consensus 680 ~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~v 759 (1091)
.-..|..+.|+|.+..|+--..
T Consensus 345 ----------------------------------------------------ki~gIr~FswsP~~~llAYwtp------ 366 (698)
T KOG2314|consen 345 ----------------------------------------------------KISGIRDFSWSPTSNLLAYWTP------ 366 (698)
T ss_pred ----------------------------------------------------CCccccCcccCCCcceEEEEcc------
Confidence 1234555666666553332211
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEec
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM 839 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~ 839 (1091)
.+.. .. ..+.+..+.+++.+++..
T Consensus 367 -------------------------e~~~-----------~p--------------------arvtL~evPs~~~iRt~n 390 (698)
T KOG2314|consen 367 -------------------------ETNN-----------IP--------------------ARVTLMEVPSKREIRTKN 390 (698)
T ss_pred -------------------------cccC-----------Cc--------------------ceEEEEecCccceeeecc
Confidence 1110 01 112233333333333332
Q ss_pred CCCCCeEEEEEcCCCCcEEEEE----------eCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeC---C
Q 001367 840 PPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG---D 906 (1091)
Q Consensus 840 ~~~~~i~~l~~s~~~~~~la~g----------~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~---D 906 (1091)
-+.-.-..+-|-. .|.+|+.- +.=..+.|+.+......-....-...|...+|-|.|..+++.+. .
T Consensus 391 lfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 391 LFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred ceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccc
Confidence 2222222334444 44455432 22225667766654432222224567899999999988876654 3
Q ss_pred CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE----ecCeEEEEEcCCcceeeeeecCCccCEEE
Q 001367 907 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVPISQ 982 (1091)
Q Consensus 907 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 982 (1091)
.++.+|.+++.. .....+..+... ....+.|||.|++++++ ..|.+..||..-..+...-...| ...+.
T Consensus 470 ~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~ 542 (698)
T KOG2314|consen 470 NTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATE 542 (698)
T ss_pred cceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-ccccc
Confidence 578899888522 122334444331 35789999999999873 46789999987534333322333 24577
Q ss_pred EEEeeCCCEEEEEEcC
Q 001367 983 ATFSCDCRMVFTSFVD 998 (1091)
Q Consensus 983 v~fs~dg~~l~t~~~d 998 (1091)
+.|.|.|+|++|++.-
T Consensus 543 veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 543 VEWDPTGRYVVTSSSS 558 (698)
T ss_pred ceECCCCCEEEEeeeh
Confidence 8999999999998864
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-10 Score=119.02 Aligned_cols=336 Identities=13% Similarity=0.133 Sum_probs=206.6
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE-----eC-----
Q 001367 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD----- 598 (1091)
Q Consensus 529 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-----s~----- 598 (1091)
..++...+++++|++++.+. +..+.|++..++..+..... ..+..+.|+|.+.++.+- ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence 34567889999999999876 44589999888864333332 358899999999988762 12
Q ss_pred CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccc
Q 001367 599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1091)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1091)
.-.+.+|+.+++.....+...... -++..|+.|..+.+ --..+.+++|+..+.+. .....+...++.+.++|.+..
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~-~~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAA-RLVSNEVQFYDLGSFKT-IQHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred CCceeeeeeccceehhheehhhhc--Ccccccccchhhhh-hhhcceEEEEecCCccc-eeeeeeccceeeEEecCCCCC
Confidence 235779999996666555544332 25788998876443 33447899999887322 223344566777777654322
Q ss_pred ccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEE
Q 001367 679 TGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 758 (1091)
Q Consensus 679 ~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~ 758 (1091)
..+.. -..-..+.-..+++|........+ .+....- -...=..+.|.+-|..|+.....
T Consensus 180 ~~vAv--------------yvPe~kGaPa~vri~~~~~~~~~~--~~a~ksF-Fkadkvqm~WN~~gt~LLvLast---- 238 (566)
T KOG2315|consen 180 PFVAV--------------YVPEKKGAPASVRIYKYPEEGQHQ--PVANKSF-FKADKVQMKWNKLGTALLVLAST---- 238 (566)
T ss_pred ceEEE--------------EccCCCCCCcEEEEeccccccccc--hhhhccc-cccceeEEEeccCCceEEEEEEE----
Confidence 11100 001123444668888765222111 1110000 01112345677766654433221
Q ss_pred EeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe---CCeEEEEEccCceeE
Q 001367 759 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTI 835 (1091)
Q Consensus 759 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~ 835 (1091)
|++.... ..-...++.+.+.. |. -....+. ..++|.++.|+|+|+-+++.. -.++.|||+. +..+
T Consensus 239 --dVDktn~----SYYGEq~Lyll~t~-g~-s~~V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v 306 (566)
T KOG2315|consen 239 --DVDKTNA----SYYGEQTLYLLATQ-GE-SVSVPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPV 306 (566)
T ss_pred --eecCCCc----cccccceEEEEEec-Cc-eEEEecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEe
Confidence 0000000 00011122223333 22 1222222 478999999999999888776 3789999976 4555
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEEeCC---CeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeC------C
Q 001367 836 LTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG------D 906 (1091)
Q Consensus 836 ~~~~~~~~~i~~l~~s~~~~~~la~g~~d---g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~------D 906 (1091)
..+ ..++=.++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-.. +-+.|+|||.+++|++. |
T Consensus 307 ~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvd 381 (566)
T KOG2315|consen 307 FDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVD 381 (566)
T ss_pred EeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEec
Confidence 444 456667899999 78888877654 7999999999998888875443 45799999999998874 6
Q ss_pred CcEEEEEcCC
Q 001367 907 AQIFVWDVDG 916 (1091)
Q Consensus 907 g~i~vwd~~~ 916 (1091)
+.++||+..+
T Consensus 382 Ng~KiwhytG 391 (566)
T KOG2315|consen 382 NGIKIWHYTG 391 (566)
T ss_pred CCeEEEEecC
Confidence 7799999987
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-11 Score=117.82 Aligned_cols=154 Identities=12% Similarity=0.191 Sum_probs=107.3
Q ss_pred EEEEEcCCCCcEEEEEeC----------CCeEEEEeccC-cceeeeecc-ccCCeEEEEECCCCCEEEEE--eCCCcEEE
Q 001367 846 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV 911 (1091)
Q Consensus 846 ~~l~~s~~~~~~la~g~~----------dg~i~iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~las~--s~Dg~i~v 911 (1091)
..+.|+| .|.+|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 6665554332 13455555532 233344432 44579999999999987654 35679999
Q ss_pred EEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe----cCeEEEEEcCCcceeeeeecCCccCEEEEEEee
Q 001367 912 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC 987 (1091)
Q Consensus 912 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~----d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~ 987 (1091)
||++.. .+..+.. ..+..+.|||+|++|+++. .|.|.+||..+.+.+.... ...++.++|||
T Consensus 88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSDATDVEWSP 153 (194)
T ss_pred EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cCcEEEEEEcC
Confidence 999742 2222221 1467899999999999842 4679999999888877642 33578999999
Q ss_pred CCCEEEEEEc------CCcEEEEeCCCCceEEEe
Q 001367 988 DCRMVFTSFV------DGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 988 dg~~l~t~~~------dg~v~iwd~~~~~~~~~~ 1015 (1091)
||++++++.. |..++||+.. |+++.+.
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 9999998875 6889999985 6665444
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-09 Score=116.29 Aligned_cols=269 Identities=14% Similarity=0.140 Sum_probs=169.6
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC----------CCEEEEEEee
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH 426 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~----------d~~i~iwd~~ 426 (1091)
++|.+.|..+++.+.... .|. .-..+ +||||+.|.++.. +..|.+||+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~------------------~G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD------------------GGF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEE------------------ccC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 889999999988776421 111 11224 9999999988755 6789999999
Q ss_pred CCcccceeEEEec--c---ccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceE
Q 001367 427 GGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501 (1091)
Q Consensus 427 ~~~~~~~~~~~~~--h---~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 501 (1091)
+.+.+..+. +.. + ...-..++++|||+.+++.--+.+..|.+.|+.+++.+.++...... ..+...++ .
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~---~vy~t~e~-~- 159 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY---HIFPTAND-T- 159 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc---EEEEecCC-c-
Confidence 987665331 111 1 12344789999999533333345899999999999999888642211 11111111 1
Q ss_pred EEEEecCCeEEEEecCCCCceee-----ecCCCCcE-EEEEEcC-CCCEEEEEecCCCCceEEEEEecCCc-----eeeE
Q 001367 502 IFSISVDGKIKAWLYDSLGARVD-----YDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKR 569 (1091)
Q Consensus 502 l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i-~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~ 569 (1091)
...-+.||......++....... +.....++ ..-.|++ +|++++... .+.|++.|+... ....
T Consensus 160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~ 234 (352)
T TIGR02658 160 FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIE 234 (352)
T ss_pred cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceee
Confidence 12333455544443333222111 11100010 0013455 888887764 367999995443 2222
Q ss_pred EEeccc----ccccceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC
Q 001367 570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1091)
Q Consensus 570 ~~~~~~----~~~~~v~~v~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1091)
.+.... .....+.-++++++++++++.. ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgk 311 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAK 311 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCC
Confidence 222110 1123445599999999998843 22579999999999999988653 478999999999
Q ss_pred -EEEEEE-CCCeEEEEECCCCCeeccc
Q 001367 636 -LLAVIA-NENRIKILETPESNSVDAA 660 (1091)
Q Consensus 636 -~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1091)
+|++.. .++.|.++|..+++.+..+
T Consensus 312 p~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777766 4788999999999888776
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-10 Score=122.01 Aligned_cols=316 Identities=11% Similarity=0.139 Sum_probs=201.2
Q ss_pred CCCCCCcchhhhccccc----CCcccCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcC-----------CCcEEEE
Q 001367 298 PDYSPKSSLKKEMFQSF----GETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN-----------VGDTGLW 362 (1091)
Q Consensus 298 ~~fsP~~~~~~~~~~~~----~~~~~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~-----------dg~i~iW 362 (1091)
.-|||.+.++..+...- +-... ..++. ..|. .|..+.|||+.+|| +|=+. ...++||
T Consensus 216 v~wSP~GTYL~t~Hk~GI~lWGG~~f-----~r~~R-F~Hp-~Vq~idfSP~EkYL-VT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIALWGGESF-----DRIQR-FYHP-GVQFIDFSPNEKYL-VTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred EEecCCceEEEEEeccceeeecCccH-----HHHHh-ccCC-CceeeecCCccceE-EEecCCccccCcccCCCceEEEE
Confidence 35778887776554321 11111 11111 1355 89999999999954 65442 1569999
Q ss_pred EcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEecccc
Q 001367 363 DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG 442 (1091)
Q Consensus 363 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~ 442 (1091)
|+.+|...+.+.+ +.+....-.-+.||.|++|+|--..+ +|.||+..+-..+.. ..+ .-.
T Consensus 288 DI~tG~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~ 347 (698)
T KOG2314|consen 288 DIATGLLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KIS 347 (698)
T ss_pred Eccccchhcceec----------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCc
Confidence 9999998875332 11222222347899999999988775 499999876332211 011 224
Q ss_pred CeeEEEEcCCCCceEEEEeeC-----CCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEe----------c
Q 001367 443 NVNDLAFSAPCKQISVITCGD-----DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------V 507 (1091)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~ 507 (1091)
.|....|+|.+. +|+--.. -..+.+-.+.+++.+++-.-|. |..+.++...+|.+|..-- .
T Consensus 348 gIr~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 348 GIRDFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred cccCcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccce
Confidence 688899999988 5554332 2356677777777777655443 4455555677777776532 1
Q ss_pred CCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC-c---eeeEEEecccccccceEE
Q 001367 508 DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-G---AIKRTYQGLQLQHNSVSV 583 (1091)
Q Consensus 508 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~---~~~~~~~~~~~~~~~v~~ 583 (1091)
-..+.|+.++..........-...|...+|-|.|..+++.+.+. ...++.+|.+.+ . +++..+.. ...+.
T Consensus 424 f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~-~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~ 497 (698)
T KOG2314|consen 424 FSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNT-VKNTVSFYAVETNIKKPSLVKELDK-----KFANT 497 (698)
T ss_pred EeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccc-cccceeEEEeecCCCchhhhhhhcc-----cccce
Confidence 12356666666555554444556788999999999888776543 366788887763 2 23333332 45778
Q ss_pred EEEcCCCCEEEEE---eCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC------CCeEEEEECCC
Q 001367 584 VHFDTAKDQILAA---GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE 653 (1091)
Q Consensus 584 v~~~~~~~~l~~~---s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iwd~~~ 653 (1091)
+.|+|.|++++.+ |..|.+.++|+.-......- ...+ ...+.+.|.|.|+|+++++. |...++|+...
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 9999999999885 46789999998753322221 1122 24578999999999999876 44456666653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-09 Score=113.24 Aligned_cols=249 Identities=15% Similarity=0.208 Sum_probs=161.4
Q ss_pred CccEEEEEECCCCCEEEEEEC----CCEEEEEEeeCC-cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 396 GVSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~----d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
......++++|++++|.++.. ++.|..|++... ..+...............++++|+++. ++++...+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 356778999999999999876 569999999875 334433333323445678999999994 33344468999999
Q ss_pred eCCC-CceeEE---ec----------CCCcceEEEeecccCCceEEEEEe-cCCeEEEEecCCCCc-e---ee-ecCCCC
Q 001367 471 DAVT-GSRTYS---FE----------GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-R---VD-YDAPGL 530 (1091)
Q Consensus 471 d~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~-~---~~-~~~~~~ 530 (1091)
++.. |..... +. .......++.+ +++++++++.. ....|.+|+++.... + .. ......
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 433322 21 11234556777 45666666654 445799999987662 2 12 223455
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCceEEEEEecC--Ccee--eEEEeccc---ccccceEEEEEcCCCCEEEEEe-CCCeE
Q 001367 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVI 602 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~s-~dg~i 602 (1091)
....++|+|+++++++... ..+.|.++++. ++.. +....... ........++++|||++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 6789999999999988764 35668888777 4432 22222211 0112578899999999998865 67789
Q ss_pred EEEECC--CCe--eEEEEeCCCCCCCCceEEEccCCCEEEEEEC-CCeEEEEECC
Q 001367 603 KIWDMN--KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1091)
Q Consensus 603 ~iwd~~--~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~ 652 (1091)
.+|+++ +++ .+..+...+. ....++++|+|++|+++.. ++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999983 333 3344443332 3588999999999998875 6789999764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-10 Score=125.77 Aligned_cols=227 Identities=13% Similarity=0.100 Sum_probs=141.0
Q ss_pred ecCCCccEEEEEECCCCCEEE---EEECC--CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC---
Q 001367 392 VRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--- 463 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~--- 463 (1091)
+......+.+-+|||||+.++ +...+ ..|.+.++.+|+..+ +....+.....+|||||+++ +++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCC
Confidence 334556677889999998633 33333 368888888876432 33344455678999999952 333322
Q ss_pred -CCcEEEEeCCCC---ceeEEecCCCcceEEEeecccCCceEEEEEe-cCCeEEEEe--cCC-CCceeeecCCCCcEEEE
Q 001367 464 -DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWL--YDS-LGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 464 -d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd--~~~-~~~~~~~~~~~~~i~~~ 535 (1091)
+..+.+|++.++ +..+....+.......+| ++||+.|+..+ .+|...+|. ++. +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 333455777653 333333233333455667 55777776655 466555554 432 22233344444566788
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCee
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQL 612 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~---dg~i~iwd~~~~~~ 612 (1091)
.|+|||++|+..... .+...|++||+.+++....... . ..+....|+|||+.|+.... ...|+++|+.+++.
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999999999887653 2356799999998876544332 2 34667899999998876442 45788999988776
Q ss_pred EEEEeCCCCCCCCceEEEccC
Q 001367 613 LTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
.......+ .+...+|+|-
T Consensus 408 ~~Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 408 RKIVIGSG---EKRFPSWGAF 425 (428)
T ss_pred EEeecCCC---cccCceecCC
Confidence 55443222 3566778774
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-10 Score=128.49 Aligned_cols=235 Identities=11% Similarity=0.050 Sum_probs=144.5
Q ss_pred eeecccCCCCcEEEEEcCCCce--EEEEEcCCC--cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEE
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHT--LLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~--llasg~~dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 402 (1091)
.+.|..+...+..-+|||||+. ++++...+| .|.+.++.+|+... +....+.....
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p 236 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMP 236 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccce
Confidence 3445555557788899999975 333544443 57777888876543 22233455678
Q ss_pred EECCCCCEEEEEEC-CC----EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE--eCCC-
Q 001367 403 VWSPDGSLLGVAYS-KH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVT- 474 (1091)
Q Consensus 403 ~~spdg~~las~~~-d~----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw--d~~~- 474 (1091)
+|||||++||..+. +| .+.+|++.++..-.......++.......+|+|||+. ++++...+|...+| ++..
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECccc
Confidence 99999999998653 22 3444777653211111112223334567899999995 23333456655555 4432
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+.....+..+...+....| ++||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+.....
T Consensus 316 g~~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~- 391 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN- 391 (428)
T ss_pred ccceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC-
Confidence 3334445445555666677 4567777766543 368999998776554332 23456778999999998876543
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCC
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~ 590 (1091)
.+...|+++|+.+++......+ . +.+...+|+|..
T Consensus 392 ~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 392 SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 3467799999988876544432 2 345667777743
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-10 Score=116.66 Aligned_cols=251 Identities=10% Similarity=0.126 Sum_probs=183.0
Q ss_pred CCccEEEEEECCCCC--EEEEEECCCEEEEEEeeCCccccee---EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEE
Q 001367 395 PGVSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQ---LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 395 h~~~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~---~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1091)
....|+.++|.-|++ .|..++.+..+....++........ .......++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 446788888886653 4555557777887777766544321 1233455677777665 44 4888999999999
Q ss_pred EeCCCCc----eeEEecCCCcceEEEeecccCCceEEEEEecC--CeEEEEecCCCCceeeecCCCC---------cEEE
Q 001367 470 WDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGL---------GCTR 534 (1091)
Q Consensus 470 wd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~---------~i~~ 534 (1091)
|..+.+. .+..+..+ ..+..+.-++. ...++++|+.. ..+++||++..+.++.-+.... .++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9987443 23333323 33444433222 33467779998 8899999998866654433222 4678
Q ss_pred EEEcCC--CCEEEEEecCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001367 535 MAYSAN--GRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 535 ~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1091)
+.|-+. ...+++++. -+++++||.+.+ +++..+.... .++.++...|+++++++|..-|.+..||.++++
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E---~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLE---NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEecccc---CcceeeeecCCCcEEEEecccchhheecccCce
Confidence 889887 888998875 667999999865 4666776655 899999999999999999999999999999999
Q ss_pred eEEE-EeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccc
Q 001367 612 LLTT-IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1091)
Q Consensus 612 ~~~~-~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1091)
.... +.+-. ..+.++..+|.++++++++-|..++|+|+.+.+.+...
T Consensus 281 l~g~~~kg~t--Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 281 LLGCGLKGIT--GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eeccccCCcc--CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 8876 44433 36899999999999999999999999999986555443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-08 Score=101.91 Aligned_cols=302 Identities=12% Similarity=0.155 Sum_probs=186.2
Q ss_pred CCeEEEEecCCCCcee---eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE--EecCCceeeEEEecccccccceE
Q 001367 508 DGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE--WNESEGAIKRTYQGLQLQHNSVS 582 (1091)
Q Consensus 508 dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i--wd~~~~~~~~~~~~~~~~~~~v~ 582 (1091)
++-|.+|++++..... .........+-++|+|+++.|.++...++ .+.|.- ||-.+|++...-.... ...+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~ggvaay~iD~~~G~Lt~ln~~~~-~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-EGGVAAYRIDPDDGRLTFLNRQTL-PGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-cCcEEEEEEcCCCCeEEEeecccc-CCCCCe
Confidence 4669999998544333 22334556788999999999999877533 344444 4544465433222111 124458
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEECCC-CeeEEE---EeCCCC-------CCCCceEEEccCCCEEEEEEC-CCeEEEE
Q 001367 583 VVHFDTAKDQILAAG-DDHVIKIWDMNK-VQLLTT---IDAGGG-------LPENPRICFNKNGTLLAVIAN-ENRIKIL 649 (1091)
Q Consensus 583 ~v~~~~~~~~l~~~s-~dg~i~iwd~~~-~~~~~~---~~~~~~-------~~~v~~v~~s~~~~~l~~~~~-dg~i~iw 649 (1091)
.+++++++++++++. ..|.|.++-+.. |.+... +...+. .+.+....+.|++++|++..- .-.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 899999999999976 568899998865 444322 221111 123678889999999888754 2468888
Q ss_pred ECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCC
Q 001367 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 729 (1091)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~ 729 (1091)
++..+.....-.. . +
T Consensus 173 ~~~dg~L~~~~~~-------------------------------------~--------------------------v-- 187 (346)
T COG2706 173 DLDDGKLTPADPA-------------------------------------E--------------------------V-- 187 (346)
T ss_pred EcccCcccccccc-------------------------------------c--------------------------c--
Confidence 8875532211000 0 0
Q ss_pred ccccccEEEEEEecCCCeEEEeec-CceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001367 730 KVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 808 (1091)
Q Consensus 730 ~~~~~~i~~~~~s~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 808 (1091)
.....-+.++|+|++++.....+ +++|.+|.++.... +... ++..+ .+...+ .......++.
T Consensus 188 -~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g----~~~~---lQ~i~------tlP~dF---~g~~~~aaIh 250 (346)
T COG2706 188 -KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG----KFEE---LQTID------TLPEDF---TGTNWAAAIH 250 (346)
T ss_pred -CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc----eEEE---eeeec------cCcccc---CCCCceeEEE
Confidence 02345678999999998877776 89999999765311 1000 00000 111111 2355678899
Q ss_pred ecCCCCEEEEEeC--CeEEEEEccC--cee--EEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEecc--Ccceee
Q 001367 809 LSKNDAYLFSASG--GVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNAR--SSEVIS 879 (1091)
Q Consensus 809 ~s~dg~~la~~~d--g~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-~i~iwd~~--~~~~~~ 879 (1091)
+++||++|.++.. +.|.+|.+.. +++ ......+....+...|++ ++++|+++..++ .|.+|..+ +|++..
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 9999999999873 5688887763 332 222233444578899999 888888877654 78887664 455433
Q ss_pred eec-cccCCeEEEEEC
Q 001367 880 KLE-GHSKRVTGLVFS 894 (1091)
Q Consensus 880 ~l~-~h~~~V~~l~~s 894 (1091)
... .......||.|.
T Consensus 330 ~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 330 LGRYAVVPEPVCVKFL 345 (346)
T ss_pred cccccCCCCcEEEEEc
Confidence 222 244456667664
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-10 Score=130.51 Aligned_cols=228 Identities=13% Similarity=0.093 Sum_probs=143.8
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCC--CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~d--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
..+.+..+...+...+|||||++|+.+...+ ..|.+||+.+|+... +....+.+...+
T Consensus 190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~ 249 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPA 249 (430)
T ss_pred CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeE
Confidence 3455666777899999999999776555443 368899998886543 222334455789
Q ss_pred ECCCCCEEEEE-ECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCcee
Q 001367 404 WSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT 478 (1091)
Q Consensus 404 ~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~ 478 (1091)
|||||++|+.. +.++ .|++||+.+++.. .+..+........|+|||+. ++++...++ .|.++|+.+++..
T Consensus 250 ~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 250 WSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEE
Confidence 99999998854 3444 6888899887532 34455556777899999995 233333333 5778888877643
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecC-C--eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
. +...........| ++++..++..+.+ + .|.+||+.++........ .......|+|||+.++..... .+..
T Consensus 325 ~-lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g~~ 398 (430)
T PRK00178 325 R-VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QGRG 398 (430)
T ss_pred E-eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CCce
Confidence 3 2211122233455 4566777666543 3 478888887654332221 222356899999999887653 3456
Q ss_pred EEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
.+++++...+ ..+.+.... +.+...+|+|
T Consensus 399 ~l~~~~~~g~-~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 399 VLMLVSINGR-VRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred EEEEEECCCC-ceEECcCCC---CCcCCCccCC
Confidence 7888887543 333443322 4455566665
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-10 Score=126.52 Aligned_cols=223 Identities=15% Similarity=0.118 Sum_probs=142.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC--c
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~ 466 (1091)
+..+...+...+|||||++|+..+.+ ..|.+|++.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999887644 379999998875422 3333445567899999995 333454454 6
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec-CC--eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 543 (1091)
|.+||+.+++.. .+..+........|+ +|+..++..+. +| .|.++++.+++.... ...........|+|||++
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 888899887643 455555555566674 46666655543 33 477777766554332 222223345789999999
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeEEEEeCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~ 620 (1091)
++..... ++...|.++|+.+++....... . ......|+|+|+.++..+.+ ..+++++...+ ....+....
T Consensus 345 i~~~~~~-~~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~ 417 (430)
T PRK00178 345 LVMVHRQ-DGNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ 417 (430)
T ss_pred EEEEEcc-CCceEEEEEECCCCCEEEccCC-C----CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC
Confidence 9887643 2345699999988865332222 1 12245899999999886643 35777777543 333443322
Q ss_pred CCCCCceEEEcc
Q 001367 621 GLPENPRICFNK 632 (1091)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1091)
+ .+...+|+|
T Consensus 418 g--~~~~p~ws~ 427 (430)
T PRK00178 418 G--EVREPSWSP 427 (430)
T ss_pred C--CcCCCccCC
Confidence 2 355666765
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-10 Score=125.79 Aligned_cols=223 Identities=15% Similarity=0.121 Sum_probs=140.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCc--
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~-- 466 (1091)
+..+...+.+.+|||||++|+..+.+ ..|++||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34467789999999999999987543 368899998875322 2222334457899999995 3344555664
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec-CCe--EEEEecCCCCceeeecCCCCcEEEEEEcCCCCE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 543 (1091)
|.+||+.+++. ..+..+.......+|+ +|++.++..+. ++. |.++|+.+++... +..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wS--pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWH--PDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence 78889887764 4454455555667775 46666655543 444 5556666554333 2222223345789999999
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCeeEEEEeCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH--VIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~ 620 (1091)
++..+.. .+...|.++|+.+++... +.... ......|+|+|+.++..+. ++ .+++++. +|.....+....
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9887643 234568888988886533 22211 1123479999999887553 33 3777787 455555554432
Q ss_pred CCCCCceEEEcc
Q 001367 621 GLPENPRICFNK 632 (1091)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1091)
+ .+...+|+|
T Consensus 437 g--~~~~p~Wsp 446 (448)
T PRK04792 437 G--EVKSPAWSP 446 (448)
T ss_pred C--CcCCCccCC
Confidence 2 356677776
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-10 Score=130.71 Aligned_cols=227 Identities=15% Similarity=0.103 Sum_probs=140.6
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCC--cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+.+..+...+.+.+|||||++++.+...++ .|.+||+.+|+.... ....+.....+|
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~w 269 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRF 269 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeE
Confidence 3556666778999999999997655544443 588889988865321 111223446899
Q ss_pred CCCCCEEEEE-ECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCceeE
Q 001367 405 SPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTY 479 (1091)
Q Consensus 405 spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~ 479 (1091)
||||+.|+.. +.++ .|++||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++...
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE
Confidence 9999988764 4555 4778888876532 34445556778999999995 333343344 57777887776533
Q ss_pred EecCCCcceEEEeecccCCceEEEEEec-CCe--EEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
+..........+| ++||++++..+. ++. |.++|+.++..... ... .......|+|||+.++..... .+...
T Consensus 345 -Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~-~~d~~ps~spdG~~I~~~~~~-~g~~~ 418 (448)
T PRK04792 345 -LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQVL-TST-RLDESPSVAPNGTMVIYSTTY-QGKQV 418 (448)
T ss_pred -EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEec-CCceE
Confidence 2212222334456 456667766554 443 55567666554332 221 122345799999999877653 34567
Q ss_pred EEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
+++++. +|...+.+.... +.+...+|+|
T Consensus 419 l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSI-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred EEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence 888887 455555555433 4566667776
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=114.18 Aligned_cols=263 Identities=13% Similarity=0.199 Sum_probs=174.4
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCc---eeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK---LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
..+-|.+|.|..+|. +||+|..+|.|.++.-..... .....++..+ ..|...---.-...|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe-----pEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE-----PEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeecccccccceeeeeeeeccC-----cccchhhhhhhhhhhhhceecCCCC
Confidence 356899999999999 679999999999997543221 1110110000 1111100111246789999998654
Q ss_pred --EEEEEECCCEEEEEEeeCCcccc------------------e--------------eEE-EeccccCeeEEEEcCCCC
Q 001367 410 --LLGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCK 454 (1091)
Q Consensus 410 --~las~~~d~~i~iwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~~~~s~d~~ 454 (1091)
.++..+.|.+|++|.+....... . ... -.+|..-|+++.++.|+.
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 56667789999999986432211 0 001 135778899999999998
Q ss_pred ceEEEEeeCCCcEEEEeCCCCce---eEEecCC-----CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-----
Q 001367 455 QISVITCGDDKTIKVWDAVTGSR---TYSFEGH-----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----- 521 (1091)
Q Consensus 455 ~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----- 521 (1091)
.++++. |=.|-+|+++--.. +..++.+ +.-|++..|+|... ..++-.+..|+|++.|++....
T Consensus 178 --t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 178 --TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred --eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchh
Confidence 566665 77899999874322 2222222 35577888888754 5788888899999999984321
Q ss_pred -eeeecC----------CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC-CceeeEEEeccccc---------ccc
Q 001367 522 -RVDYDA----------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQ---------HNS 580 (1091)
Q Consensus 522 -~~~~~~----------~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~---------~~~ 580 (1091)
...... --..|..+.|+++|+++++-. -.+|.+||+. ..+++.+++.|..- ...
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 111111 112578899999999999853 3569999994 56677777666521 122
Q ss_pred ---eEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001367 581 ---VSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 581 ---v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1091)
-..++|+.++.++++|+....+++++...|
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 235789999999999999999999996654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-09 Score=125.89 Aligned_cols=210 Identities=14% Similarity=0.071 Sum_probs=138.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC--c
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~ 466 (1091)
+..+...+.+.+|||||++||.+..+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566788999999999999988644 47999999987532 23445566778999999985 334444444 5
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec-CC--eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 543 (1091)
|++||+.++.. ..+..+........|+ ++++.|+..+. ++ .|.++|+...+. ..+...........|+|+|++
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 88999887754 3444454444555664 46777766554 33 577777765543 233334455677899999999
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeEEEEe
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~ 617 (1091)
++...... +...|.+||+.++.... +... .......|+|++++|+..+.++ .+++.+.. +.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 99877533 35579999998865432 2221 1234457999999998876543 35555543 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-09 Score=108.77 Aligned_cols=358 Identities=14% Similarity=0.205 Sum_probs=207.2
Q ss_pred cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-----eeEEecCCC------------cceEEEeecccCCceEE
Q 001367 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFI 502 (1091)
Q Consensus 440 h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~~~~l 502 (1091)
...-|.++.|...|. +|++|..+|.|.++.-.... ....++.|. ..|..+.|....+...+
T Consensus 24 eadiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hhcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 345689999999999 89999999999999643222 223344443 46778888888888889
Q ss_pred EEEecCCeEEEEecCCCCceee-----ecCCCCcEEEEEE---cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecc
Q 001367 503 FSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1091)
Q Consensus 503 ~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~~---s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1091)
+..+.|.+|++|.+........ .......+.++.. .+....+. ..+.+.+..
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN- 161 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN- 161 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc-
Confidence 9999999999998876544331 1111112222221 11111111 112233322
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-EEEEeCCCC-----CCCCceEEEccC-CCEEEEEECCCeEE
Q 001367 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-LTTIDAGGG-----LPENPRICFNKN-GTLLAVIANENRIK 647 (1091)
Q Consensus 575 ~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~-----~~~v~~v~~s~~-~~~l~~~~~dg~i~ 647 (1091)
.|...|+++.++.|+..++++ .|=.|.+|+++--.. ......... ..-|++..|+|. .+.++-.+..|+|+
T Consensus 162 -aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 162 -AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred -cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 134789999999999888876 567899999864322 122211111 123677889994 46677777889999
Q ss_pred EEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeec
Q 001367 648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 727 (1091)
Q Consensus 648 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 727 (1091)
+-|+.....-.. .-+++...
T Consensus 240 LcDmR~~aLCd~------------------------------------------------hsKlfEep------------ 259 (433)
T KOG1354|consen 240 LCDMRQSALCDA------------------------------------------------HSKLFEEP------------ 259 (433)
T ss_pred Eeechhhhhhcc------------------------------------------------hhhhhccc------------
Confidence 999874311100 00011000
Q ss_pred CCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001367 728 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 807 (1091)
Q Consensus 728 ~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 807 (1091)
. .|..+.++ .+--..|..+
T Consensus 260 -e------------dp~~rsff------------------------------------------------seiIsSISDv 278 (433)
T KOG1354|consen 260 -E------------DPSSRSFF------------------------------------------------SEIISSISDV 278 (433)
T ss_pred -c------------CCcchhhH------------------------------------------------HHHhhhhhce
Confidence 0 00000000 0122356667
Q ss_pred EecCCCCEEEEEeCCeEEEEEcc-CceeEEEecCCC------------CC---eEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 001367 808 ALSKNDAYLFSASGGVISLYIVM-TFKTILTIMPPS------------PT---ATSLAFNPHDNNVIAIGMDDSTILIYN 871 (1091)
Q Consensus 808 ~~s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~---i~~l~~s~~~~~~la~g~~dg~i~iwd 871 (1091)
.|+++|+++++-+--+|++||+. ..+++.+++.|. .. -..++|+- ++.++++|+....+++++
T Consensus 279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence 77777777777766778888873 444555444332 11 25678998 788999999999999999
Q ss_pred ccCccee-eeeccccCC--eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCC
Q 001367 872 ARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 872 ~~~~~~~-~~l~~h~~~--V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 948 (1091)
+..|... .++...... ...+ ..-+.+.+++......+|-- .++- ...+...+|.|...
T Consensus 358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd------------~ldf----~kkilh~aWhp~en 418 (433)
T KOG1354|consen 358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVD------------ALDF----RKKILHTAWHPKEN 418 (433)
T ss_pred CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccc------------hhhh----hhHHHhhccCCccc
Confidence 8776432 333322221 1111 01123334444333222110 0000 01467889999999
Q ss_pred EEEEEecCeEEEEE
Q 001367 949 RFLLVHETHLAIYE 962 (1091)
Q Consensus 949 ~la~~~d~~i~vwd 962 (1091)
.+|++.-+.++||.
T Consensus 419 ~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 419 SIAVAATNNLYIFQ 432 (433)
T ss_pred eeeeeecCceEEec
Confidence 99998877777763
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.2e-10 Score=129.01 Aligned_cols=214 Identities=19% Similarity=0.166 Sum_probs=139.7
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCC--CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~d--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 402 (1091)
...+.+..+...+...+|||||++++.+...+ ..|.+||+.+++... +..+...+.++
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~ 239 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAP 239 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccce
Confidence 33455666776899999999999765544332 479999999886543 22345567789
Q ss_pred EECCCCCEEEEE-ECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCC--cEEEEeCCCCc
Q 001367 403 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTGS 476 (1091)
Q Consensus 403 ~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~--~i~iwd~~~~~ 476 (1091)
+|+|||+.|+.. +.++ .|++||+.++... .+..+........|+|||+. |+..+ .++ .|.++|+.+++
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCC
Confidence 999999988754 3333 5888898876432 24445555667899999994 44433 333 58888887766
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCC---eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
. ..+..+...+....| ++++.+++.++.++ .|.+||+.+..... +... .......|+|||++|+.....+ +
T Consensus 314 ~-~~l~~~~~~~~~~~~--spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~-~ 387 (417)
T TIGR02800 314 V-RRLTFRGGYNASPSW--SPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG-G 387 (417)
T ss_pred E-EEeecCCCCccCeEE--CCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC-C
Confidence 4 344444455566677 45677888877765 78888887744332 2221 2234568999999998877543 3
Q ss_pred ceEEEEEecCCceeeEEE
Q 001367 554 ESFLVEWNESEGAIKRTY 571 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~ 571 (1091)
...+++.+.. +.....+
T Consensus 388 ~~~l~~~~~~-g~~~~~~ 404 (417)
T TIGR02800 388 RGVLGLVSTD-GRFRARL 404 (417)
T ss_pred cEEEEEEECC-CceeeEC
Confidence 4567776644 3333333
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-10 Score=111.30 Aligned_cols=163 Identities=18% Similarity=0.326 Sum_probs=113.8
Q ss_pred EEEEEECCCCCEEEEEEC----------CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 399 VNRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~----------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
=..+.|+|+|++|++-.. -+...+|.+...........+ ...++|.+++|+|+|+.+.+++|..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 346889999999887533 134666666443322221122 234579999999999975566676788999
Q ss_pred EEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEE
Q 001367 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
+||++ ++.+..+. ...++.+.|+ |+|++++.++.+ |.|.+||.++.+.+..... ..+..++|+|||++++
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~ws--P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWS--PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEEC--CCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEE
Confidence 99986 66666664 5677888885 567889888744 6799999996666555433 3578999999999999
Q ss_pred EEecC--CCCceEEEEEecCCceeeEE
Q 001367 546 SCGTS--KEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 546 ~~~~~--~~~~~~i~iwd~~~~~~~~~ 570 (1091)
++... ...++.+.||+.. |+.+..
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEe
Confidence 88753 1235668899874 554443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.8e-11 Score=117.03 Aligned_cols=358 Identities=14% Similarity=0.135 Sum_probs=227.3
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee--eecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
..++.++||...++....-+..+ -+++.+.|.++++|--+...+.. .......+++++.+.++.+.|+++-.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---- 88 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---- 88 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----
Confidence 34567789999998887766555 49999999999999654433332 22334557889999999999998875
Q ss_pred ceEEEEEec----CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 554 ESFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 554 ~~~i~iwd~----~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
.+.+.-+.+ +.....+.+..|. ..+..+-|+-...++++.+.|..+.---.+.+..+........ ...+.
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~ 162 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQ 162 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCc
Confidence 445665543 3444555666666 8899999998889999999988775544555555433322111 11222
Q ss_pred EccCCCEEEEEECCCeEEEEECC--CCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 630 FNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
+.-. +..+|...|.|....+. .-..+..+.+|.+.+.+++| .+....+.++..|.
T Consensus 163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~W---------------------d~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKW---------------------DPGQRLLFSGASDH 219 (404)
T ss_pred eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEE---------------------cCCCcEEEeccccC
Confidence 2211 56667677777766554 34678889999999999999 67778899999999
Q ss_pred ccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceee-----ccCCccc
Q 001367 708 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT-----KVPPRLY 782 (1091)
Q Consensus 708 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~~~ 782 (1091)
.+.+||+....... ....+|...|..+...+--+.+++++.||.|.+|+++.......+.... -..+..|
T Consensus 220 ~vi~wdigg~~g~~-----~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTA-----YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred ceEEEeccCCccee-----eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence 99999987443322 2334688899999988888999999999999999997654422222211 1233334
Q ss_pred cCCCCCceeeecCCCC---CCCCCeeEEEecCCCCEEEEEeCCeEEEEEcc-------CceeEEEecCCCCCeEEEEEcC
Q 001367 783 QPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFNP 852 (1091)
Q Consensus 783 ~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s~ 852 (1091)
+...--......+... .-...+...+-+....+...+..-.+|+-|.- +...+..+......|+++.+..
T Consensus 295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe 374 (404)
T KOG1409|consen 295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE 374 (404)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh
Confidence 3321100000000000 00112222222222222222223334444321 1122444444456789999988
Q ss_pred CCCcEEEEEeCCCeEEEEeccC
Q 001367 853 HDNNVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 853 ~~~~~la~g~~dg~i~iwd~~~ 874 (1091)
.-.+|++++.|..|+|||+..
T Consensus 375 -tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 375 -TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred -hccceeecCCceEEEEEechh
Confidence 667899999999999999864
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-09 Score=115.46 Aligned_cols=188 Identities=14% Similarity=0.229 Sum_probs=147.8
Q ss_pred CCCCEEEEEe-CCeEEEEEccCceeEEEecCC---CCCeEEEEE------cC-------------CCCcEEEEEeCCCeE
Q 001367 811 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPP---SPTATSLAF------NP-------------HDNNVIAIGMDDSTI 867 (1091)
Q Consensus 811 ~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~------s~-------------~~~~~la~g~~dg~i 867 (1091)
|.+.++|... ||.+++|+..+++....+... .+..++..| +| .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456777765 899999999999988877642 223333333 11 155678889999999
Q ss_pred EEEeccCcceeeeec--cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcC
Q 001367 868 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 945 (1091)
Q Consensus 868 ~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~ 945 (1091)
.+|++..|+....+. .|.+.|.++.++.+-..|.|++.|+.+..|+..... .+........ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999888776 599999999999999999999999999999999843 3444444333 688999999
Q ss_pred CCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeC-----CCEEEE-EEcCCcEEEEeCCC
Q 001367 946 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFT-SFVDGTLSIHEASN 1008 (1091)
Q Consensus 946 dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~d-----g~~l~t-~~~dg~v~iwd~~~ 1008 (1091)
||+.|+++ .++|++||+++++.+.. +.||.++|+++.|..+ |.++++ ...+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988874 47899999999999887 6799999999999987 666654 44455688887765
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-09 Score=115.87 Aligned_cols=194 Identities=13% Similarity=0.185 Sum_probs=154.6
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEc------C------------CCCceEEEEeeCCCc
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT 466 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~------------d~~~~~l~s~~~d~~ 466 (1091)
.|-+.|+|....||.++||++..++....+.....-++..++..|. | .+...+++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3457899999999999999999886544332222233444455552 2 122337888999999
Q ss_pred EEEEeCCCCceeEEec--CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEE
Q 001367 467 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 544 (1091)
|.++++..|+....+. .|.+.|.++.++ .+-..|.+++.|+.+..|+.........+......+.+++.+|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888875 699999998774 345689999999999999999998888999888899999999999999
Q ss_pred EEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC-----CCEEEE-EeCCCeEEEEECCC
Q 001367 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILA-AGDDHVIKIWDMNK 609 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~l~~-~s~dg~i~iwd~~~ 609 (1091)
++++. .|.+||+++++.+..|.+|. ++|+++.|..+ |.++++ ...+..+.+|-.+.
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98854 59999999999999999998 99999999877 677777 34556677776544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-08 Score=109.73 Aligned_cols=209 Identities=9% Similarity=0.070 Sum_probs=121.7
Q ss_pred CCeEEEEEccCceeEEEecCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccC-------Ce
Q 001367 821 GGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-------RV 888 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~-------~V 888 (1091)
++.+..||.++|+.+.++....... .+..+. ++ .++.+..+|.+..+|..+|+.+........ ..
T Consensus 154 ~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~ 230 (377)
T TIGR03300 154 DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERL 230 (377)
T ss_pred CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence 5666666666666655544322111 111222 33 567788889999999999987654321100 00
Q ss_pred EEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCC
Q 001367 889 TGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 965 (1091)
Q Consensus 889 ~~l~~sp--dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~ 965 (1091)
..+.-+| .+..+..++.+|.+..||.++++..-... ... ..... .++..+.+ ..++.+..+|..+
T Consensus 231 ~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 231 VDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred hccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEECCC
Confidence 0111111 34577778889999999999876332111 111 11122 23444444 6789999999999
Q ss_pred cceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeE
Q 001367 966 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1045 (1091)
Q Consensus 966 ~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1045 (1091)
|+.+............+... .+..|++++.+|.|+++|..+|+.+.++.... ..+...- .+. ++.|
T Consensus 299 G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--------~~~~~sp-~~~---~~~l 364 (377)
T TIGR03300 299 GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--------SGIASPP-VVV---GDGL 364 (377)
T ss_pred CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CccccCC-EEE---CCEE
Confidence 98775532111112222222 46688899999999999999999987665211 1111100 111 3468
Q ss_pred EEEecCCcEEEEe
Q 001367 1046 AVGLTNGEVYVIE 1058 (1091)
Q Consensus 1046 ~~g~~dg~v~~w~ 1058 (1091)
++++.||.|+.|.
T Consensus 365 ~v~~~dG~l~~~~ 377 (377)
T TIGR03300 365 LVQTRDGDLYAFR 377 (377)
T ss_pred EEEeCCceEEEeC
Confidence 8999999998763
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.2e-08 Score=110.39 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=112.8
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEE
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1091)
.++.++.++.|..+|..+|+.+............... ++..++.++.+|.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5778888999999999999998876544432222222 345788888999999999998888776554332111111
Q ss_pred EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccce-----EEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001367 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1091)
. .+..++.+.. ++.++.+|..+|+.+-.+.... ..+ .+.... +..++.+..++.+..+|..+|+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 2 2345555543 6679999999998876665432 111 111111 3467888889999999999998
Q ss_pred eEEEEeCCCCC--CCC---ceEEEcc--CCCEEEEEECCCeEEEEECCCC
Q 001367 612 LLTTIDAGGGL--PEN---PRICFNK--NGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 612 ~~~~~~~~~~~--~~v---~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
.+......... ..+ ..+.-+| .+..+++++.+|.++.||..++
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 77554321110 000 0000011 2446666667777777776655
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.04 E-value=0.00013 Score=83.90 Aligned_cols=622 Identities=10% Similarity=0.053 Sum_probs=300.5
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC----
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---- 407 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---- 407 (1091)
|..+-..|+.+-++| +|.+||.-|.=.+-.+.+-...... ...++. + ..-++|..++.-.+
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy----------~~ilet--~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY----------VVILET--F-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch----------hhhhhh--c-ccccceeeEEEEeccccC
Confidence 444456667777787 4688887666555555443322110 000000 1 12357777766542
Q ss_pred CCEEEEEE---CCCEEEEEEeeCCcccceeEEEeccccCeeEEE--EcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 408 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 408 g~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
+..+++|+ .||++++..-.-+-.......+.| -..++.+. +.+.-.. +++.+-.+ .-++..+...-......
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEeccc
Confidence 34566664 578898876544322222223445 33466666 4332222 23322222 23344433221111122
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
+.......+..+.- ++..|+=.. ...|++++-. .....+....+. +....+.+...++.++. .+.+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~-ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKI-TIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCce-EEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22222223322211 112222221 2345555432 233344444433 33333344445555443 334555566
Q ss_pred CCceeeEEEecccccccceEEEEEcCCC------CEEEEEeCCCeEEEE-ECCCCeeEEEEeCCCC--CCCCceEEEccC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGGG--LPENPRICFNKN 633 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~~~~--~~~v~~v~~s~~ 633 (1091)
..+.+....+.. -...|.|+.++|-+ ++++.|..+..+.+. -......+........ ...|.-..+-.|
T Consensus 517 ~~~~l~e~~~~~--~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 517 EDGGLREVSHKE--FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred eccceeeeeehe--ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 555532222221 24679999998752 256677765554443 3344444433322221 112344455567
Q ss_pred CCEEEEEECCCeEEEEECC--CCCeeccc--ccccccceeeeeccccccccccccCC----------------------c
Q 001367 634 GTLLAVIANENRIKILETP--ESNSVDAA--GVLSDNLRKLSVNPISTVTGAGIANG----------------------S 687 (1091)
Q Consensus 634 ~~~l~~~~~dg~i~iwd~~--~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~g----------------------~ 687 (1091)
..+|.++..||.+.-|.+. ++..-..- .-...++.--.|....+......++. .
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~ 674 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNH 674 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhh
Confidence 8899999999998766544 33221111 11122222212221111111111111 0
Q ss_pred ccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccc
Q 001367 688 VSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 767 (1091)
Q Consensus 688 ~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~ 767 (1091)
+.......-+..++++.. +.+++..++.-.....+.+. -......+++.+....+.+.+.......=
T Consensus 675 ~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvp-----l~~~prrI~~q~~sl~~~v~s~r~e~~~~------- 741 (1096)
T KOG1897|consen 675 MCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVP-----LGESPRRICYQESSLTFGVLSNRIESSAE------- 741 (1096)
T ss_pred hcccccccCCceEEEecC-CceEEEEecchhhcceeeec-----CCCChhheEecccceEEEEEecccccchh-------
Confidence 000000111222333322 44555544432233333322 12344556666644433333332111100
Q ss_pred ccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC-CCEEEEEe-----------CCeEEEEEccCceeE
Q 001367 768 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKTI 835 (1091)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~~~-----------dg~i~iwd~~~~~~~ 835 (1091)
..+....-..++++|..+-+.+...++........+.+..|..| +.++++|. .|.|.+|....++.+
T Consensus 742 -~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L 820 (1096)
T KOG1897|consen 742 -YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL 820 (1096)
T ss_pred -hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence 00111111235566666665555544433222334445558777 77777764 267888888774444
Q ss_pred EEecCC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 836 LTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 836 ~~~~~~--~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
+....+ .+.+.++..- +|++|| +-...|++|++.+.+.++.-..|..++..+...-.|..++.|.--+.+.+-.
T Consensus 821 ~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred eeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 443322 2344444332 567766 3456899999999877777777889999999999999999999888887776
Q ss_pred cCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCc------c----eeeeeecC-------C
Q 001367 914 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL------T----CLKQWFPI-------S 976 (1091)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~------~----~~~~~~~~-------h 976 (1091)
.+..+.. .....+...+ .+.+++.+-.+..++.+-.+|.+.+....+. + ....|..| |
T Consensus 897 y~~~eg~---f~evArD~~p--~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~h 971 (1096)
T KOG1897|consen 897 YKGDEGN---FEEVARDYNP--NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRH 971 (1096)
T ss_pred EeccCCc---eEEeehhhCc--cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeee
Confidence 6654311 2222222222 4788899988988888877777666544321 0 01111111 2
Q ss_pred ccCEEE--EEEeeCCCEEEEEEcCCcEEEEe
Q 001367 977 SVPISQ--ATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 977 ~~~v~~--v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
..-|.. -..+|-+..+..|..+|.|-+--
T Consensus 972 g~lv~~~~~s~~~~~~~vlfgTv~GsIG~i~ 1002 (1096)
T KOG1897|consen 972 GSLVMQLGDSMIPLEPKVLFGTVNGSIGIIV 1002 (1096)
T ss_pred cceEeeccccccCCCCcEEEEEccceEEEEE
Confidence 333333 12234444577788899887653
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-07 Score=115.87 Aligned_cols=260 Identities=12% Similarity=0.073 Sum_probs=161.8
Q ss_pred EEEEEecC-CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCE
Q 001367 737 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 815 (1091)
Q Consensus 737 ~~~~~s~d-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 815 (1091)
..++++++ +..+++-..++.|+++|.........+.. . ......|. +. ...-.....+++.+++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~---g---~~G~~dG~------~~-~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST---G---EEGLRDGS------FE-DATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC---C---CcCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence 45788875 55555656678899888653211000000 0 00000010 00 012234678999999887
Q ss_pred EEEEe--CCeEEEEEccCceeEEEecCC-----------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc
Q 001367 816 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 876 (1091)
Q Consensus 816 la~~~--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~ 876 (1091)
|++++ ++.|+.+|..++.. .++.+. -.....++|+|+++.++++...++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77765 47799999877653 332110 12346799999667777777788999999998765
Q ss_pred eeeeec---------cc------cCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCceeeee--------eeecc---C
Q 001367 877 VISKLE---------GH------SKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCR--------SLQTP---D 929 (1091)
Q Consensus 877 ~~~~l~---------~h------~~~V~~l~~spdg~~-las~s~Dg~i~vwd~~~~~~~~~~--------~~~~~---~ 929 (1091)
.. .+. ++ -.....|+++|+|++ +++-+.++.|++||+.++...... .+... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 111 11 123567999999984 455566789999999876522100 00000 0
Q ss_pred CC--cCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecC------------CccCEEEEEEeeCCCEEEE
Q 001367 930 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT 994 (1091)
Q Consensus 930 ~~--~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~------------h~~~v~~v~fs~dg~~l~t 994 (1091)
+. .........++|+++|..+++ ..+++|++||..++......-.+ +-.....+++++||+.+++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000113468999999997777 57889999999877654322111 1235678999999999888
Q ss_pred EEcCCcEEEEeCCCCce
Q 001367 995 SFVDGTLSIHEASNLEV 1011 (1091)
Q Consensus 995 ~~~dg~v~iwd~~~~~~ 1011 (1091)
-+.+++|++||+.++..
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88899999999999865
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=112.75 Aligned_cols=243 Identities=14% Similarity=0.218 Sum_probs=169.2
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCc-ccc---eeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~---~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1091)
+.||+..|..++--.+.+-+++++.|.+|++|.++... ... ...+...|+.+|.++.|-.+.+ +++++ ||-|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcc
Confidence 78999999999988888999999999999999997422 222 3446778999999999999887 56554 8899
Q ss_pred EEEeCCCCceeEEec--CCCcceEEEeecccCCceEEEEE-ecCCeEEEEecCCCCceeeec-----CCCCcEEEEEEcC
Q 001367 468 KVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYD-----APGLGCTRMAYSA 539 (1091)
Q Consensus 468 ~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~s~ 539 (1091)
.+||.--|+.+..+. ...+.+..+...++-+...++.+ +...+|+++|.+..+-...++ .++.-+.+++..+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 999988888775332 11222223332233344455554 788999999998876555443 3345688999999
Q ss_pred CCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEE-EECCCCeeEEEEeC
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA 618 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~ 618 (1091)
.|++++++-. +|.|.+.|.++|+.+..+.... .....++ .|..+.++....|.++.+ |..-.|....+...
T Consensus 887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 9999998865 6679999999999887776544 2333333 355667777778888888 98877766555432
Q ss_pred CCCCCCCceEEEccCCCEEEEEECCCeEEEEE
Q 001367 619 GGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
... ..--.-.-|.-++++.....+.+|.
T Consensus 959 ppe----pahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 959 PPE----PAHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CCc----chhhhhccCceeEEeccCcEEEEEe
Confidence 211 0001111255566666666677764
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-08 Score=96.88 Aligned_cols=250 Identities=15% Similarity=0.112 Sum_probs=158.3
Q ss_pred CcEEEEEcC---CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc---cEEEEEECCCCC
Q 001367 336 SPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGS 409 (1091)
Q Consensus 336 ~V~~v~fsp---dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~ 409 (1091)
.+..+.|.. +|...++-+..+|.|.++.......... ++ + +..-.- .-.++.|++-+.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~-----ls~~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------G-----LSSKKISVVEALSLDISTSGT 134 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------c-----cchhhhhheeeeEEEeeccCc
Confidence 666666652 4444566677778888887644322211 00 0 111111 245788999999
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC-CCceeEE-ecCCCcc
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP 487 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~~~~~ 487 (1091)
.++++..+|.+.+-+..... +.....++.|...++.+.|+..... ++++||.|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999988854444332 3333467899999999999876655 89999999999999998 4455544 5678899
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCC--EEEEEecCCCCceEEEEEecCCc
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~--~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
|.++.-++. .+.++++|+.|-.|++||.++......-....+.|..+..+|.-. .|++|--+| ..+.+.+.+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence 999887653 667999999999999999997666555455567899999998543 444444322 344444432
Q ss_pred --eeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEE-EEECCC
Q 001367 566 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNK 609 (1091)
Q Consensus 566 --~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~-iwd~~~ 609 (1091)
+....+..+..|..-...-.|......+++++ .|+.++ +|-.-+
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 21112222221223333334433334566654 555544 664433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-07 Score=115.49 Aligned_cols=255 Identities=11% Similarity=0.075 Sum_probs=158.6
Q ss_pred eEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecC--C------------CCCeEEEEEcCCCCcEEEEEe-CCCeE
Q 001367 805 PCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI 867 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~~~~~la~g~-~dg~i 867 (1091)
..+++++++..+.++. ++.|++||.. ++.+..+.. . -.....+++++ ++..|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 5688887655444443 5889999976 444443332 1 12357899998 555555544 45789
Q ss_pred EEEeccCcceeeeeccc-----------------cCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeee---ee
Q 001367 868 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 926 (1091)
Q Consensus 868 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~---~~ 926 (1091)
+++|+.++.. .++.+- -..-..++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877643 333110 11346799999 56677777888999999998765321000 00
Q ss_pred ccCCCc---CCCCCceEEEEcCCCCEEEE--EecCeEEEEEcCCcceeeeee-----------cC---------CccCEE
Q 001367 927 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWF-----------PI---------SSVPIS 981 (1091)
Q Consensus 927 ~~~~~~---~~~~~i~~l~fs~dg~~la~--~~d~~i~vwd~~~~~~~~~~~-----------~~---------h~~~v~ 981 (1091)
...+.. ........++|+|+|+.|.+ ..+++|++||+.++....... .+ .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 001110 00124567999999986655 456899999998765321100 00 011346
Q ss_pred EEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccc-cCCCC--cccccceeEEEeCCCCCCeEEEEecCCcEEEEe
Q 001367 982 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1058 (1091)
Q Consensus 982 ~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~ 1058 (1091)
.++++++|..+++-+.+++|++||..++........... ...+. ...--.+..++++| +|+++++-+.++.|++|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 899999999888888899999999998876543321100 00000 00011355678888 578888888999999999
Q ss_pred cCCCC
Q 001367 1059 PNEPG 1063 (1091)
Q Consensus 1059 ~~~~~ 1063 (1091)
+....
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 97654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.9e-08 Score=106.64 Aligned_cols=206 Identities=14% Similarity=0.028 Sum_probs=129.1
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcC---CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~---dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.+.+.... .+....|||||+++++..+. +..|.++|+.+|+... +....+.+....
T Consensus 181 ~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~ 239 (419)
T PRK04043 181 QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSD 239 (419)
T ss_pred eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeE
Confidence 34343333 77899999999864443333 3569999998887553 223445667788
Q ss_pred ECCCCCEEEEEEC---CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCcee
Q 001367 404 WSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT 478 (1091)
Q Consensus 404 ~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~ 478 (1091)
|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++.+ ...+ .|.+.|+.+++..
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCCeE
Confidence 9999998876532 34688888877752 2 2333443344568999999644433 2233 6888898887764
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecC---------CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
+.... ... ...| +++|+.++..+.. ..|.+.|++++.... +... .......|+|||+.++....
T Consensus 315 rlt~~-g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 315 QVVFH-GKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred eCccC-CCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEc
Confidence 33221 111 2355 5577777666543 257777877765433 2222 23335889999999988765
Q ss_pred CCCCceEEEEEecCCce
Q 001367 550 SKEGESFLVEWNESEGA 566 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~ 566 (1091)
. .+...+.+.++....
T Consensus 388 ~-~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 388 L-GNQSALGIIRLNYNK 403 (419)
T ss_pred c-CCcEEEEEEecCCCe
Confidence 4 335568888876543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-08 Score=110.20 Aligned_cols=507 Identities=13% Similarity=0.121 Sum_probs=254.6
Q ss_pred CcEEEEEcCCCceEEEEEcC----CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~----dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.-+-..|+|... ++|+++. .|+|.|+- .+|+.-..... .-.+++++|+|..-.|
T Consensus 17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--------------------P~hatSLCWHpe~~vL 74 (1416)
T KOG3617|consen 17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTY--------------------PVHATSLCWHPEEFVL 74 (1416)
T ss_pred cccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccc--------------------ceehhhhccChHHHHH
Confidence 344567899887 6777764 48888885 66664432111 1245679999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe--cCC--Ccc
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGH--GAP 487 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~--~~~ 487 (1091)
|.|..-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|....-..++.. -.| ...
T Consensus 75 a~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ 149 (1416)
T KOG3617|consen 75 AQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQ 149 (1416)
T ss_pred hhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhce
Confidence 999999999999988754222 3447999999999999999 8999999999999986632222221 122 223
Q ss_pred eEEEeecccCCce------EEEEEecCCeEE-EEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 488 VYSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 488 v~~~~~~~~~~~~------~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
++-++|.-+.++. ..+..+.+..+- .+++.......... -.-.|+|..++.++. +|+|+-.
T Consensus 150 ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyv 217 (1416)
T KOG3617|consen 150 LTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYV 217 (1416)
T ss_pred eeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEE
Confidence 4444443333321 123333333322 33332111111110 012367777777665 5556666
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEEC-CC----------------------------Ce
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NK----------------------------VQ 611 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~-~~----------------------------~~ 611 (1091)
|- .|+......... .| .+-|.+...-+++.-.+-++.++-. .+ |-
T Consensus 218 dq-~g~~~~V~k~dS----~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGv 291 (1416)
T KOG3617|consen 218 DQ-NGRQRTVHKLDS----EV-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGV 291 (1416)
T ss_pred cC-CCcEEEEEEccc----hH-HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccc
Confidence 63 333333322211 00 0112222122222111111111110 00 10
Q ss_pred e--EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCe----------ecccccccccceeeeeccccccc
Q 001367 612 L--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS----------VDAAGVLSDNLRKLSVNPISTVT 679 (1091)
Q Consensus 612 ~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~ 679 (1091)
+ -..+.... ...+.+++++..+..++.|...|.+.+|.-..... +...+...+.|+.+.|+|.....
T Consensus 292 Lr~~eKyg~e~-ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~ 370 (1416)
T KOG3617|consen 292 LRKSEKYGLEL-GEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTA 370 (1416)
T ss_pred ccCCcchhhhc-CCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchh
Confidence 0 00111111 12578999999999999999999999996543211 11122223345555554433322
Q ss_pred cccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEE
Q 001367 680 GAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 759 (1091)
Q Consensus 680 ~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~v 759 (1091)
++.+.... ++.+.. .+. ..|.+...++.-+.++-.|.-+.
T Consensus 371 avn~~~~v------------~ll~E~------------------~l~---~~h~~~~~A~q~ss~S~~L~hc~------- 410 (1416)
T KOG3617|consen 371 AVNTEEDV------------VLLGEN------------------SLT---VKHRGKMAAIQTSSNSFTLLHCT------- 410 (1416)
T ss_pred hhhhhhhe------------eeeccC------------------chH---HHHhhhhHHhhhcCCceEEEeec-------
Confidence 22110000 000000 000 00111111111111111111110
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEe-
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI- 838 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~- 838 (1091)
+|. -. .+ ...-++..++.+ ...++...+.+|..|++++...+...
T Consensus 411 --------------------------sGv-~~--~l---~~~~~~~gi~l~--e~~lvvwNgr~v~~y~lq~SG~la~~~ 456 (1416)
T KOG3617|consen 411 --------------------------SGV-SQ--DL---KLSIPSAGICLG--EKQLVVWNGRTVVTYDLQTSGSLATIQ 456 (1416)
T ss_pred --------------------------cch-hh--hh---hhccchhhheec--cceEEEEcCceEEEEEecccchhHHHh
Confidence 110 00 00 012233444543 34566666788999998643222111
Q ss_pred -cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee--eccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 839 -MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 839 -~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~--l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
.......+++++.. .++...++.+ |.++.+. |...+. +..-.+.|.-+.++ |.+++.....+.++-+|+.
T Consensus 457 ~~tF~cet~~la~~n--qN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvs 529 (1416)
T KOG3617|consen 457 CTTFSCETTSLAIVN--QNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVS 529 (1416)
T ss_pred hhhhccccchHhHhh--cceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhhh
Confidence 11122334445543 3455555544 5555544 333322 22234445545553 7888888888888888888
Q ss_pred CCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE---Eec----CeEEEEEcCCccee
Q 001367 916 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL 969 (1091)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~---~~d----~~i~vwd~~~~~~~ 969 (1091)
..+...........+..+..+.+..+..+..|..+.+ ..+ .++.+||.++++..
T Consensus 530 r~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 530 RAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred hhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence 7665544444444455555567788888877766554 222 37999999887643
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-09 Score=111.28 Aligned_cols=294 Identities=10% Similarity=0.119 Sum_probs=185.8
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
-+..+.||+..|.+++--.+.+. +++++.|++|++|.+.. |..+.+ +.|... ...|+.+|.++.|
T Consensus 727 rL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t--------saCQfT-----Y~aHkk~i~~igf 792 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT--------SACQFT-----YQAHKKPIHDIGF 792 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc--------ceeeeE-----hhhccCcccceee
Confidence 34567899999999877666553 58999999999999864 333322 122222 5569999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC-CCceEEEEeeCCCcEEEEeCCCCceeEEec-
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFE- 482 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 482 (1091)
-.|-++++++ ||.|.+||.--|..+.+...-..|. .+..+.--++ .+.++++.++...+|+++|.+.++-...++
T Consensus 793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~-a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEG-AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eeccceeeec--cCcceeecccccchhHhhhcCcccC-CCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 9999999887 7789999998776655332222222 2333333333 333345555889999999999887766654
Q ss_pred ----CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 483 ----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 483 ----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
+..+.+.+++..+ .|..++.+-.+|.|.+.|.+++..+..+.........++ .|..+.++.... +..+.
T Consensus 870 cna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHsla 942 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSLA 942 (1034)
T ss_pred ccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----cceeE
Confidence 3445678888754 567899999999999999999887776655444333333 244455554432 44466
Q ss_pred E-EecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeeEEEEeCCCCCCCCceEEEccC
Q 001367 559 E-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN----KVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 559 i-wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~----~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
+ |....|......+... .+..- .-.-|..++++.....+.+|--. ....+..+....-....++++.-|-
T Consensus 943 VnWhaldgimh~q~kppp---epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL 1017 (1034)
T KOG4190|consen 943 VNWHALDGIMHLQDKPPP---EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL 1017 (1034)
T ss_pred eeehhcCCeeeeccCCCC---cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc
Confidence 6 8766665544443322 11111 11225567777766777777421 1122233333333334567777776
Q ss_pred CCEEEEEECCCeEEE
Q 001367 634 GTLLAVIANENRIKI 648 (1091)
Q Consensus 634 ~~~l~~~~~dg~i~i 648 (1091)
..-+..|...|.|.+
T Consensus 1018 N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1018 NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchhhccCCCCceee
Confidence 666677777777765
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.95 E-value=0.00028 Score=81.25 Aligned_cols=581 Identities=11% Similarity=0.100 Sum_probs=286.5
Q ss_pred EECCCCCEEEEEECCCEEEEEEee-CCcccce---eEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 403 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
...++|...+.|..+|.+...-+. +++.... ....-+...-..++..-++| +++.|+.-|.=++-.+.+....
T Consensus 264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence 345678888888888877665555 4443222 11233555566777777777 5788887665555555432221
Q ss_pred -------EEecCCCcceEEEeecccC--CceEEEEEe---cCCeEEEEecCCCCcee---eecCCCCcEEEEE-------
Q 001367 479 -------YSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGARV---DYDAPGLGCTRMA------- 536 (1091)
Q Consensus 479 -------~~~~~~~~~v~~~~~~~~~--~~~~l~s~~---~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~------- 536 (1091)
.++. .-+||..++..... .+..+++++ .||.+++..-.-+-... .+.+ -..+..+.
T Consensus 341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~ 418 (1096)
T KOG1897|consen 341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY 418 (1096)
T ss_pred Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence 2332 33577777764332 223454443 57788877432111100 1111 01112222
Q ss_pred ----------------------------EcCCCCEEEEEecCCCC-----ceEEEEEecCCceeeEEEecccccccceEE
Q 001367 537 ----------------------------YSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV 583 (1091)
Q Consensus 537 ----------------------------~s~d~~~l~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 583 (1091)
|+.+.+.+++....++. ...|++++-. .....+... ..++.
T Consensus 419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p----~~~ti 492 (1096)
T KOG1897|consen 419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP----GKITI 492 (1096)
T ss_pred CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC----CceEE
Confidence 22222222222221110 0112222211 111112111 23333
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC--C----CEEEEEECCCeEEEEECC-CCCe
Q 001367 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILETP-ESNS 656 (1091)
Q Consensus 584 v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iwd~~-~~~~ 656 (1091)
...+.+...++.++.++.+...++..+.+ .....+.-...|.|+.++|- + +++++|..+..+.+.-.- ....
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGGL-REVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccce-eeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 33444555677777777777777766653 22222333346889999873 2 378888776665554332 2222
Q ss_pred eccc--c--cccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCC--cccceeecCCc
Q 001367 657 VDAA--G--VLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARP--SECQSLLLPSK 730 (1091)
Q Consensus 657 ~~~~--~--~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~--~~~~~~~~~~~ 730 (1091)
+... . .....|.-..+ -.|..++.++..||.+.-+.++.... ...+.. .
T Consensus 572 ~~~~~l~~~~iPRSIl~~~~---------------------e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~----~ 626 (1096)
T KOG1897|consen 572 ITHEQLSGEIIPRSILLTTF---------------------EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV----T 626 (1096)
T ss_pred eeeeccCCCccchheeeEEe---------------------eccceEEEEEcCCceEEEEEEEcccceEcccccc----c
Confidence 2111 1 11111111111 34467888888888887766543211 111110 0
Q ss_pred cccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEec
Q 001367 731 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 810 (1091)
Q Consensus 731 ~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 810 (1091)
....++.--.|+..++.-+.+.+|.-..+|..+. ..++....++...| +..+.-.
T Consensus 627 lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~----------------------kLv~spls~kev~~---~c~f~s~ 681 (1096)
T KOG1897|consen 627 LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG----------------------KLVYSPLSLKEVNH---MCPFNSD 681 (1096)
T ss_pred cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC----------------------cEEEeccchHHhhh---hcccccc
Confidence 1223444445555554444444443333332111 00011111111011 1111111
Q ss_pred CCCCEEEEEeCCeEEEEEccCcee--EEEecCCCCCeEEEEEcCCCCcEEEEEeC-----------C---CeEEEEeccC
Q 001367 811 KNDAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMD-----------D---STILIYNARS 874 (1091)
Q Consensus 811 ~dg~~la~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~-----------d---g~i~iwd~~~ 874 (1091)
.-...++++..+.+++.-++.-+. ++++. -....+.+++.+ ...++++.+. . ..++++|-++
T Consensus 682 a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT 759 (1096)
T KOG1897|consen 682 AYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT 759 (1096)
T ss_pred cCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCc
Confidence 123467777777777776654332 23322 233456667765 3444444332 1 1466777666
Q ss_pred cceeeeecc--c--cCCeEEEEECCC-CCEEEEEeC----------CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCce
Q 001367 875 SEVISKLEG--H--SKRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 939 (1091)
Q Consensus 875 ~~~~~~l~~--h--~~~V~~l~~spd-g~~las~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 939 (1091)
-+.+...+- . .-.|.++.|..| +.+++.|.. .|.|.|+.+...... +.+....-. +.+
T Consensus 760 f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L--~~v~e~~v~----Gav- 832 (1096)
T KOG1897|consen 760 FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL--ELVAETVVK----GAV- 832 (1096)
T ss_pred eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce--eeeeeeeec----cce-
Confidence 554432221 1 123555568877 777777652 367777777662211 111111000 012
Q ss_pred EEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeeccc
Q 001367 940 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1019 (1091)
Q Consensus 940 ~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~ 1019 (1091)
.+.---...++++-...|++|++.+.+.++. ...|..++..+...-.|..+++|..=+++.+-.....+-........
T Consensus 833 -~aL~~fngkllA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD 910 (1096)
T KOG1897|consen 833 -YALVEFNGKLLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD 910 (1096)
T ss_pred -eehhhhCCeEEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh
Confidence 2222223345556677899999998866665 45678899999999999999999887877765554443211122223
Q ss_pred ccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCCC
Q 001367 1020 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1065 (1091)
Q Consensus 1020 ~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~ 1065 (1091)
+.|. +...+.+- |+..++.+..+|.+++-.......+
T Consensus 911 ~~p~-------Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~t 947 (1096)
T KOG1897|consen 911 YNPN-------WMTAVEIL--DDDTYLGAENSGNLFTVRKDSDATT 947 (1096)
T ss_pred hCcc-------ceeeEEEe--cCceEEeecccccEEEEEecCCCCc
Confidence 3333 22333333 3567888888999988887654433
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=126.43 Aligned_cols=202 Identities=16% Similarity=0.257 Sum_probs=161.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+..|-..|.++.=+|...+.++|+.||.|++|....++.+....+ .|. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 334667889999999999999999999999999999877664433 234 7899999999999 688888899999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEE---ecCCeEEEEecCCCCc-eeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
+. .+.....+.|......+.|.. ..++++ +.++.+.+||...... -.....|.+.++++++.|..+.+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 66 667777888998888888754 345554 3567899998654332 22447788999999999999999999
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1091)
+. +|.|++||++..++++.++. +. ...++++|+..|.++||++.....+..++..
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 87 55699999998887766653 33 4578899999999999999998888777643
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-07 Score=92.02 Aligned_cols=198 Identities=15% Similarity=0.109 Sum_probs=131.1
Q ss_pred eeEEEecCCCCEEEEEe-CCeEEEEEccCceeE--EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEecc-Ccceee
Q 001367 804 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS 879 (1091)
Q Consensus 804 v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~-~~~~~~ 879 (1091)
..++-+++.+..++++. +|.+.+-+....... +..+.|.-++..+.|+..+.+++.+|++|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45677888888887775 688886655544443 37888999999999998778899999999999999998 445554
Q ss_pred e-eccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC--CEEEEEec
Q 001367 880 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHE 955 (1091)
Q Consensus 880 ~-l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg--~~la~~~d 955 (1091)
. .+-|...|.++.-|| ++.+++||+.|..|++||...-. +++. .+ ...+.|+.+..+|.- +.|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl~--~~--~v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPLF--KA--KVGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----Cccc--cC--ccccceEEEEecchhhhHHHHHHHh
Confidence 3 556889999998886 67899999999999999998522 1111 11 111579999999854 44555544
Q ss_pred CeEEEEEcCCccee----eeeecCCccCEEEEEEeeCCCEEEEEE-cCCcEE-EEeCCCC
Q 001367 956 THLAIYEAEELTCL----KQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNL 1009 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~----~~~~~~h~~~v~~v~fs~dg~~l~t~~-~dg~v~-iwd~~~~ 1009 (1091)
+..+|-+...+..- ......|.+-...-.|.....+|+|++ .|..++ +|-..++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 44555555433221 122233443333344433335677754 455544 6654444
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.9e-07 Score=99.90 Aligned_cols=218 Identities=10% Similarity=0.005 Sum_probs=132.7
Q ss_pred eEEEEEccCceeEEEecCCCCCeEEEEEcCCCCc-EEEEEeCC---CeEEEEeccCcceeeeeccccCCeEEEEECCCCC
Q 001367 823 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 898 (1091)
Q Consensus 823 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g~~d---g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 898 (1091)
.|.+-|..... .+.+.... .+....|+| ||+ .++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 45555544333 33333233 677899999 666 46654433 479999998887544333 445566788999998
Q ss_pred EEEEE-eCC--CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecC----eEEEEEcCCcceeee
Q 001367 899 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 971 (1091)
Q Consensus 899 ~las~-s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~----~i~vwd~~~~~~~~~ 971 (1091)
.|+.. +.+ ..|.++|+.++... .+....+ ......|+|||+.|+..++. .|+++|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 77643 333 46888888776522 2222222 12345899999999875443 699999988876544
Q ss_pred eecCCccCEEEEEEeeCCCEEEEEEcC---------CcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCC
Q 001367 972 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1042 (1091)
Q Consensus 972 ~~~~h~~~v~~v~fs~dg~~l~t~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1042 (1091)
...+. ....|||||++|+..+.. ..|.+.|+.++... .+... .. .....|+|+ |
T Consensus 317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~---~~--------~~~p~~SPD-G 379 (419)
T PRK04043 317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN---GV--------NQFPRFSSD-G 379 (419)
T ss_pred ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC---CC--------cCCeEECCC-C
Confidence 33222 124899999998877654 26788888888653 22211 01 112579994 7
Q ss_pred CeEEEEecC-CcEEEEecCCCCCCcccCC
Q 001367 1043 TQFAVGLTN-GEVYVIEPNEPGDTWAVLP 1070 (1091)
Q Consensus 1043 ~~l~~g~~d-g~v~~w~~~~~~~~~~~~~ 1070 (1091)
+.++....+ +.-.++-+.-.+.+=..+|
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 766655544 4445665555553333333
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.4e-09 Score=123.96 Aligned_cols=225 Identities=13% Similarity=0.181 Sum_probs=166.7
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC-CCc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA 486 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~ 486 (1091)
++..+....++...-|..+.+.. .+..+-..|.++.=+|... +.+||+.||.|++|....+..+..++. ...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 34444444555555565554432 2344556788888888777 789999999999999999988877742 236
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc-
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1091)
.|+.+.|+ ..|..+..+..||.+.+|... .+.......|......+.|-. ..+++.+.+.+ ++.+.+||..-.
T Consensus 2253 ~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFN--HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhc--ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 78888774 466788899999999999877 455556777777777777765 56677666555 677999996532
Q ss_pred --eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC
Q 001367 566 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1091)
Q Consensus 566 --~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1091)
.++. ..| .+.++++++.|..+.+++||.+|.|++||++..++.+.++. +. ...++++|+..
T Consensus 2327 ~~s~v~--~~H---~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2327 MNSLVH--TCH---DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSE 2389 (2439)
T ss_pred ccceee--eec---CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcc
Confidence 2222 344 48999999999999999999999999999998888766643 23 46689999999
Q ss_pred CeEEEEECCCCCeeccccc
Q 001367 644 NRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 644 g~i~iwd~~~~~~~~~~~~ 662 (1091)
|.++||++..-..+..+..
T Consensus 2390 g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred cceEEEEccccchhhcCch
Confidence 9999999997766655543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.4e-07 Score=88.23 Aligned_cols=207 Identities=19% Similarity=0.179 Sum_probs=139.5
Q ss_pred EEEecCCCCEEEEEeCCeEEEEEccCc--eeEEE---ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee
Q 001367 806 CFALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 880 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~dg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~ 880 (1091)
.++.+.||+.||+..|..|.|-..... ..+.+ .+.....=+.++||| |+.+||.+...|+|++||+....+ ..
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FV 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EE
Confidence 367889999999999999988765532 12222 223334568899999 999999999999999999985433 23
Q ss_pred ecc-------ccCCeEEEEECCCC------CEEEEEeCCCcEEEEEcCCCc---eeeeeeeeccCCCcCCCCCceEEEEc
Q 001367 881 LEG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWG---IQTCRSLQTPDGVMTLAPSETHIQFH 944 (1091)
Q Consensus 881 l~~-------h~~~V~~l~~spdg------~~las~s~Dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~fs 944 (1091)
+.. -..+|..+.|-+-. ..|+....+|.++-+-+..+. -.....+....... ..|.++.+.
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~ 156 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYH 156 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEc
Confidence 322 23567777775421 246667788888877764322 12222233222222 479999999
Q ss_pred CCCCEEEEEe-----cC-------eEEEEEcCCcceee--------------------e-----ee---cCCccCEEEEE
Q 001367 945 KDQTRFLLVH-----ET-------HLAIYEAEELTCLK--------------------Q-----WF---PISSVPISQAT 984 (1091)
Q Consensus 945 ~dg~~la~~~-----d~-------~i~vwd~~~~~~~~--------------------~-----~~---~~h~~~v~~v~ 984 (1091)
|..++|+++. ++ -+.-|.+-++..-. . ++ ......|..+.
T Consensus 157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS 236 (282)
T PF15492_consen 157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS 236 (282)
T ss_pred CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence 9999988741 11 36666654321110 0 00 11256788999
Q ss_pred EeeCCCEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 985 FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 985 fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
.||||+.||+...+|.|.+|++++..+...+..
T Consensus 237 lSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 237 LSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 999999999999999999999999998877763
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-06 Score=93.87 Aligned_cols=211 Identities=9% Similarity=0.057 Sum_probs=121.0
Q ss_pred CCeEEEEEccCceeEEEecCCCCC-----eEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccC-------Ce
Q 001367 821 GGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-------RV 888 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~-------~V 888 (1091)
++.+..+|.++|+.+..+...... ..+.+.. ++ .++.++.+|.+..+|..+|+.+........ ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 566666777777666555422110 0111222 23 456677899999999999987654431100 01
Q ss_pred EEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCc
Q 001367 889 TGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 966 (1091)
Q Consensus 889 ~~l~~sp--dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~ 966 (1091)
..+.-+| .+..+..++.+|.+..+|..+++..- +...+. ...+.. .+++..+...++.+..+|..+|
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W----~~~~~~------~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW----KREYGS------VNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE----eecCCC------ccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 1111222 24566667789999999999876321 111111 111111 2344444577899999999999
Q ss_pred ceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEE
Q 001367 967 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1046 (1091)
Q Consensus 967 ~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1046 (1091)
+.+............+... .+.+|+.++.||.|.+.|..+|+.+.+..... . .+.+.-+ .. +..|+
T Consensus 315 ~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~---~-----~~~s~P~-~~---~~~l~ 380 (394)
T PRK11138 315 VELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS---S-----GFLSEPV-VA---DDKLL 380 (394)
T ss_pred cEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC---C-----cceeCCE-EE---CCEEE
Confidence 8765422111111222222 24567788999999999999999886664211 1 1111001 11 35799
Q ss_pred EEecCCcEEEEec
Q 001367 1047 VGLTNGEVYVIEP 1059 (1091)
Q Consensus 1047 ~g~~dg~v~~w~~ 1059 (1091)
+++.||.|+.+++
T Consensus 381 v~t~~G~l~~~~~ 393 (394)
T PRK11138 381 IQARDGTVYAITR 393 (394)
T ss_pred EEeCCceEEEEeC
Confidence 9999999998876
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-06 Score=87.65 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=127.8
Q ss_pred EEEecCCCCEEEEEe------CCeEEEEEcc-CceeEEEecCCCCCeEEEEEcCCCCcEEEEEe----------------
Q 001367 806 CFALSKNDAYLFSAS------GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---------------- 862 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~------dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~---------------- 862 (1091)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..+.-.-..+.+.| |++.|+++-
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 468999999999874 3779999999 7788888988877778899999 786666652
Q ss_pred --CCCeEEEEeccCcceeee--e--ccccCCeEEEEECCCCCEEEEEeCCCc-------EEEEEcCCCceeeeeeeeccC
Q 001367 863 --DDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALNILVSSGGDAQ-------IFVWDVDGWGIQTCRSLQTPD 929 (1091)
Q Consensus 863 --~dg~i~iwd~~~~~~~~~--l--~~h~~~V~~l~~spdg~~las~s~Dg~-------i~vwd~~~~~~~~~~~~~~~~ 929 (1091)
.+-++...|..+|+.+.+ + .-|.-.|..|++.++|..++-.-..|. |-+++-... . ..+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~--~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--L--RLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--c--eeccCCh
Confidence 123566678888988766 5 337788999999999977765544332 334443331 0 1111111
Q ss_pred CC-cCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCc
Q 001367 930 GV-MTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 1000 (1091)
Q Consensus 930 ~~-~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~ 1000 (1091)
.. ......+-+++++++|.+++++ ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+ .|.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCC-Ccc
Confidence 00 1112468899999999999885 56789999999999887643 3355666666666 666544 344
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.3e-08 Score=99.03 Aligned_cols=165 Identities=20% Similarity=0.156 Sum_probs=115.0
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE-
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 414 (1091)
.++.+.++|.++ ++|++..+....++++...... .+.++. ..-...-+++.|..+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~------------~~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDV------------SCVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeE------------eecccCcceeeeeeccceEEEEe
Confidence 556667788887 7788888787777776554431 111110 0011233444555555555554
Q ss_pred --ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-cCCCcceEEE
Q 001367 415 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1091)
Q Consensus 415 --~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~ 491 (1091)
+....+.+|+...+... .+-||-..+++++|+||++ +++++..|..|+|-....-..+..| -||..-|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44456667766654332 3559999999999999999 8999999999999877766555555 5799999999
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeec
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1091)
+.. ++..|++++.|+++++||+.+++.+..+.
T Consensus 201 sl~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLT---DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eec---cCceeeecCCCCcEEEEecccCCcccccc
Confidence 974 33579999999999999999988875543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.5e-06 Score=85.37 Aligned_cols=233 Identities=17% Similarity=0.166 Sum_probs=154.6
Q ss_pred EEEEEcCCCceEEEEEcCCCc-EEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE-
Q 001367 338 MSMDFHPVQHTLLLVGTNVGD-TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~-i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 415 (1091)
..++.+|+....+|.+-.-|+ ..+||..+|+...... .-....|.|| -.||+||++|.+.-
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTEn 70 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTEN 70 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEecc
Confidence 458889966667788877655 7899999998876421 1122336666 57999999999873
Q ss_pred ----CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC----------------CCcEEEEeCCCC
Q 001367 416 ----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----------------DKTIKVWDAVTG 475 (1091)
Q Consensus 416 ----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~----------------d~~i~iwd~~~~ 475 (1091)
..|.|-|||...+ ++...++..|.-.-..+.+.|||+.++++-|+- +-.+..-|..+|
T Consensus 71 d~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 71 DYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred ccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 3478999999932 455667777777778899999998544444431 335666777888
Q ss_pred ceeEE--e--cCCCcceEEEeecccCCceEEEEEecCCe-------EEEEecCCCCceeeecC-------CCCcEEEEEE
Q 001367 476 SRTYS--F--EGHGAPVYSLCPHAKENIHFIFSISVDGK-------IKAWLYDSLGARVDYDA-------PGLGCTRMAY 537 (1091)
Q Consensus 476 ~~~~~--~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~-------~~~~i~~~~~ 537 (1091)
+.+.. + .-|...|..+++. .+|..++..-..|. +-+++.. +....+.. -.+-+-++++
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~--~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVD--GDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred ceeeeeecCccccccceeeEEec--CCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEE
Confidence 88766 4 3377788888884 45544444433332 3333322 22222221 2346889999
Q ss_pred cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEE
Q 001367 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1091)
Q Consensus 538 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~ 603 (1091)
++++..+++.+.- -+.+.+||..+++.+....-. .++.++-.+++ ++..+..|.+.
T Consensus 225 ~~~g~~ia~tsPr---Gg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~--f~~ssG~G~~~ 280 (305)
T PF07433_consen 225 DRDGRLIAVTSPR---GGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG--FLVSSGQGQLI 280 (305)
T ss_pred eCCCCEEEEECCC---CCEEEEEECCCCCEeeccccC-----ceeeeeecCCc--eEEeCCCccEE
Confidence 9999998877642 567999999999988776653 46777766665 44444445433
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.4e-06 Score=82.45 Aligned_cols=214 Identities=15% Similarity=0.176 Sum_probs=134.2
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeccCc--ceeee---eccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001367 848 LAFNPHDNNVIAIGMDDSTILIYNARSS--EVISK---LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 922 (1091)
Q Consensus 848 l~~s~~~~~~la~g~~dg~i~iwd~~~~--~~~~~---l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~ 922 (1091)
++.+. +|++||+. .|..|.|-..++. ..+.. .+...-.-+.++||||+.+||.+...|+|+++|+.+.++-.-
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 56677 89888855 5778888766542 22222 222333567899999999999999999999999997543221
Q ss_pred eeeeccCCCcCCCCCceEEEEcCCC-------CEEEEEecCeEEEEEcCCc-----ce--eeeeecCCccCEEEEEEeeC
Q 001367 923 RSLQTPDGVMTLAPSETHIQFHKDQ-------TRFLLVHETHLAIYEAEEL-----TC--LKQWFPISSVPISQATFSCD 988 (1091)
Q Consensus 923 ~~~~~~~~~~~~~~~i~~l~fs~dg-------~~la~~~d~~i~vwd~~~~-----~~--~~~~~~~h~~~v~~v~fs~d 988 (1091)
..-....+ .....|..+.|-+-. .+|+...+|.++=|-+..+ +. ..++...+...|.++.+.|.
T Consensus 81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 11111111 122457777775532 4566688888887765432 11 12223334779999999999
Q ss_pred CCEEEEEEcC-----------CcEEEEeCCCCceEEEeeccc---------------------ccCCCCcccccceeEEE
Q 001367 989 CRMVFTSFVD-----------GTLSIHEASNLEVQCRILSTA---------------------YLRPTTSCLHVYPHAIA 1036 (1091)
Q Consensus 989 g~~l~t~~~d-----------g~v~iwd~~~~~~~~~~~~~~---------------------~~~~~~~~~~v~~~~~~ 1036 (1091)
-++|++||.. .-+..|.+-++.......... +.......+.|. .++
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmS 236 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMS 236 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEE
Confidence 8888777632 136778877765544322110 000000123344 456
Q ss_pred eCCCCCCeEEEEecCCcEEEEecCC--CCCCccc
Q 001367 1037 AHPLKPTQFAVGLTNGEVYVIEPNE--PGDTWAV 1068 (1091)
Q Consensus 1037 ~~p~d~~~l~~g~~dg~v~~w~~~~--~~~~~~~ 1068 (1091)
.+| ||..||+...+|.|.+|+++. ...+|..
T Consensus 237 lSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 237 LSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ECC-CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 788 599999999999999999987 3455643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5e-06 Score=92.53 Aligned_cols=343 Identities=14% Similarity=0.107 Sum_probs=188.5
Q ss_pred cEEEEEECCCCCEEEEEEC----CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC
Q 001367 398 SVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~----d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1091)
.-+-..|+|...++|+++. .|.|.||- ++|+.-+.. +.+- .+++++|+|..- +|+.|-.-|.+.+|...
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecC
Confidence 3344679999999998863 46788874 445432211 2222 366799999765 78888888999999977
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC--CC--C--cEEEEEEcCCCCEEE--
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PG--L--GCTRMAYSANGRRLF-- 545 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~--~--~i~~~~~s~d~~~l~-- 545 (1091)
+.+.......|..+|..+.|+ ++|..++++..-|.+.+|..+..+....... |. . ...+...++++.-++
T Consensus 90 ~~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~l 167 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKL 167 (1416)
T ss_pred CceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhh
Confidence 777666667899999999994 5778999999999999998875443332211 11 1 234555566643221
Q ss_pred -EEecCCCCceEEE-EEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001367 546 -SCGTSKEGESFLV-EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 546 -~~~~~~~~~~~i~-iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
-+...+|.. -+- .++.+.....+... =.-.|+|..++.++.+|+|+-.|- +|+..........
T Consensus 168 aKaaVtgDe~-alD~~fnwk~~~a~rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 168 AKAAVTGDES-ALDEPFNWKESLAERSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhhccCchh-hhcccccCccchhhcccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence 111111111 111 22211111001110 012478888999999999988774 4555555444322
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
..+-|.+...-+++...+-++.++-.... +....+..+.++.. .|...|+ ++.+
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~-------G~~ee~~~vk~sgk-----~GgrqGg------------iA~s 286 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAK-------GTSEERCAVKVSGK-----LGGRQGG------------IACS 286 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEEEecCC-------CchHHhhhhhhccc-----cCCccCc------------cccc
Confidence 34556664445555555444444433211 11111111111100 0111111 2222
Q ss_pred ccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCcccc
Q 001367 704 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 783 (1091)
Q Consensus 704 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 783 (1091)
...|.++- ..... ......+.+++++..+..+.++...|.+.+|.-..... .....+..|.
T Consensus 287 EssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f------~g~p~~d~w~ 347 (1416)
T KOG3617|consen 287 ESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF------QGDPTIDVWT 347 (1416)
T ss_pred cccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc------cCCCCcceEE
Confidence 22121110 00000 11456789999999999999999999999996332211 1111345565
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEE
Q 001367 784 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 819 (1091)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 819 (1091)
+.+.. ...+.|+.+.|.|--..+++-
T Consensus 348 l~~~~----------e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 348 LNGKR----------ESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred ecCch----------hhccceEEEEeccccchhhhh
Confidence 54433 245677888887755444443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=103.68 Aligned_cols=247 Identities=15% Similarity=0.254 Sum_probs=164.4
Q ss_pred CcEEEEEcCCC--ceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC-CCEEE
Q 001367 336 SPMSMDFHPVQ--HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLG 412 (1091)
Q Consensus 336 ~V~~v~fspdg--~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~la 412 (1091)
.|-.+.|||.- .+. ++......-.+|++....-... ..++.||+.+|+.+.|.|. -..||
T Consensus 69 ~vad~qws~h~a~~~w-iVsts~qkaiiwnlA~ss~~aI----------------ef~lhghsraitd~n~~~q~pdVla 131 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYW-IVSTSNQKAIIWNLAKSSSNAI----------------EFVLHGHSRAITDINFNPQHPDVLA 131 (1081)
T ss_pred hhcceecccCCCCcee-EEecCcchhhhhhhhcCCccce----------------EEEEecCccceeccccCCCCCccee
Confidence 56667777643 334 3334445667898865432221 1237899999999999995 57899
Q ss_pred EEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecCCCcceEEE
Q 001367 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~ 491 (1091)
+++.|..+..||+.+... .......-......++|+-... .+...+..+.|.+||.+.| .++..+++|...|+.+
T Consensus 132 tcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~ 207 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI 207 (1081)
T ss_pred eccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence 999999999999988653 2223344445677899987655 3555666778999999865 5678899999999999
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeec-CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE---------e
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW---------N 561 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw---------d 561 (1091)
.|..... ..+.+.+.||+|+.||.+......... ....++..-++.|-|+-...--.. |...+.++ +
T Consensus 208 ~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~--G~n~v~~~~c~n~d~e~n 284 (1081)
T KOG0309|consen 208 DFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV--GGNMVPQLRCENSDLEWN 284 (1081)
T ss_pred HHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc--CCeeeeeccccchhhhhc
Confidence 8753322 368899999999999998765544332 234466666677755433221111 12234333 3
Q ss_pred cCC-ceeeEEEecccccccceEEEEEcCC----------CCEEEEEeCCCeEEEEECCC
Q 001367 562 ESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 562 ~~~-~~~~~~~~~~~~~~~~v~~v~~~~~----------~~~l~~~s~dg~i~iwd~~~ 609 (1091)
..+ .+.+..|.||. ..|....|-.. .-.|++-+.|.++++|-+.+
T Consensus 285 ~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 285 VFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 332 35788898887 55554444322 23689999999999998764
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=97.32 Aligned_cols=159 Identities=9% Similarity=0.092 Sum_probs=113.4
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeccCcce----eeeeccccCCeEEEEECCCCCEEE---EEeCCCcEEEEEcCCCc
Q 001367 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILV---SSGGDAQIFVWDVDGWG 918 (1091)
Q Consensus 846 ~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~la---s~s~Dg~i~vwd~~~~~ 918 (1091)
..+..++ ++++||++..+....++++..... +..... ...-+++.|-.+..... .+++...+.+|+...+.
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3455666 888999988888877777654332 222221 12233444443333333 34455566677666422
Q ss_pred eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEc
Q 001367 919 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
....-||.. .++.+++|||+++|+++ .|..|+|-....--.+..+..||..-|..++.-++. .|+++|.
T Consensus 144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sG 213 (390)
T KOG3914|consen 144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSG 213 (390)
T ss_pred ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCC
Confidence 334456666 79999999999999996 788999999888778888889999999999987654 5899999
Q ss_pred CCcEEEEeCCCCceEEEee
Q 001367 998 DGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 998 dg~v~iwd~~~~~~~~~~~ 1016 (1091)
|++|++||+.+|+.+..+.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999999876554
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-08 Score=113.54 Aligned_cols=215 Identities=15% Similarity=0.227 Sum_probs=157.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCC-cEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK-TIKV 469 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~-~i~i 469 (1091)
+..|+...+|++||-+.+.|++|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. .++.+ ... -..+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHHH
Confidence 77899999999999999999999999999999999997665 46789999999999999994 44333 232 5779
Q ss_pred EeCCC-CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC----CCcEEEEEEcCCCCEE
Q 001367 470 WDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRL 544 (1091)
Q Consensus 470 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~s~d~~~l 544 (1091)
|++.+ +...++|.+ -.++.|+.+ ...-+.|+......+||+++.....++... ...-.+..|+|+...+
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99764 455555543 234555432 233455555567889999998876653221 1133678899999887
Q ss_pred EEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001367 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1091)
+-- =.+||.+..+.++.|.... .. ..-.|+|.|..++.-++ |||+++.++++..+.-..
T Consensus 1246 lnd---------GvLWDvR~~~aIh~FD~ft---~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq--- 1304 (1516)
T KOG1832|consen 1246 LND---------GVLWDVRIPEAIHRFDQFT---DY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ--- 1304 (1516)
T ss_pred eeC---------ceeeeeccHHHHhhhhhhe---ec-ccccccCCCceEEeech-----hhhhHHHHHHhcCccccc---
Confidence 643 2589999888887776544 11 22358999999998775 999999999887765433
Q ss_pred CceEEEccCCCEEEE
Q 001367 625 NPRICFNKNGTLLAV 639 (1091)
Q Consensus 625 v~~v~~s~~~~~l~~ 639 (1091)
..+.|+..|..++.
T Consensus 1305 -c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1305 -CAVTFNSTGDVMYA 1318 (1516)
T ss_pred -eEEEeccCccchhh
Confidence 67888888876654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.6e-07 Score=89.62 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=56.9
Q ss_pred CCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCce---eEEEecCCC-----CCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001367 799 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY 870 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~~~~~la~g~~dg~i~iw 870 (1091)
.|...+.++.|..|...+.++.+=.|-+|+++--. .+..+++|. .-|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 58888999999999999999999999999986322 122333333 2467778888666677777788888888
Q ss_pred eccC
Q 001367 871 NARS 874 (1091)
Q Consensus 871 d~~~ 874 (1091)
|++.
T Consensus 250 DlRq 253 (460)
T COG5170 250 DLRQ 253 (460)
T ss_pred hhhh
Confidence 8763
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-06 Score=82.31 Aligned_cols=148 Identities=11% Similarity=-0.035 Sum_probs=107.3
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
+.++++|+|++++++.+....|-.|.+...............++.=.+..|+.... .++++..||++.|||++.-...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 78999999999999999999999999986554332223334445556788998877 7999999999999999865433
Q ss_pred E-----EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC--------CcEEEEEEcCCCCEEE
Q 001367 479 Y-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--------LGCTRMAYSANGRRLF 545 (1091)
Q Consensus 479 ~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~~~~s~d~~~l~ 545 (1091)
. +-..|.+.+..+.|++.+--.+|+..-.-+.+++.|+++......+.... ..+....|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 22358899999999876655677777778899999999877655433222 2255556666655554
Q ss_pred EEe
Q 001367 546 SCG 548 (1091)
Q Consensus 546 ~~~ 548 (1091)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-06 Score=81.58 Aligned_cols=189 Identities=10% Similarity=-0.030 Sum_probs=128.1
Q ss_pred EEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc-ce-ee-eeccccCCeEEEEE
Q 001367 817 FSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EV-IS-KLEGHSKRVTGLVF 893 (1091)
Q Consensus 817 a~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~-~~-~~-~l~~h~~~V~~l~~ 893 (1091)
.+..|.++++.+++-+..........-.+.++++++ |++++++.++...|..|.+... +. +. ....-++.-.+..|
T Consensus 133 i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 133 IASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF 211 (344)
T ss_pred eccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence 333477778877765443333222223478999999 9999999999999999998763 22 22 33334556678899
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCE--EEE-EecCeEEEEEcCCcceee
Q 001367 894 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLL-VHETHLAIYEAEELTCLK 970 (1091)
Q Consensus 894 spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~--la~-~~d~~i~vwd~~~~~~~~ 970 (1091)
+.....+|+++.||++.|||+........ ........+.+.+..+.|++-|.+ |.. -.-+.+.+.|++++....
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~---~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMA---EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchh---hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 99999999999999999999987442221 111112223358999999987643 333 345689999999987665
Q ss_pred eeecC------C-ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 971 QWFPI------S-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 971 ~~~~~------h-~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
.+... | ...|..-.|+.++..+.+.+++ .+.-|++.+..
T Consensus 289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 289 VIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred EEecCccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 54332 2 2347788888888877776655 46667766543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-05 Score=89.23 Aligned_cols=193 Identities=18% Similarity=0.110 Sum_probs=114.2
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCc--ceE-----EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 529 (1091)
.++.++.++.+.-+|.++|+.+.+...... ... .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 467777788999999999998877643220 000 0000011123467788899999999999998888766543
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccc--cceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
....+.... ++ .++.+.. ++.++-+|..+|+.+-.+....... ....+-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-DG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-CC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 221111221 33 4444432 5679999999999877765422000 00001111 1346777888999999999
Q ss_pred CCCeeEEEEeCCCCC--CC---CceEEEcc--CCCEEEEEECCCeEEEEECCCCCee
Q 001367 608 NKVQLLTTIDAGGGL--PE---NPRICFNK--NGTLLAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 608 ~~~~~~~~~~~~~~~--~~---v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
.+|+.+......... .. ...+..+| .+..+++++.+|.+..+|..+++.+
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 999877654322110 00 01111122 2456777778888998888877544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.2e-05 Score=81.01 Aligned_cols=220 Identities=14% Similarity=0.148 Sum_probs=138.5
Q ss_pred EEEEec-CCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEec-CCCCE
Q 001367 738 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY 815 (1091)
Q Consensus 738 ~~~~s~-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~ 815 (1091)
+++|.+ ++..+++-...+.|..|+..... .....+ .....+++. +++.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~-----------------------~~~~~~------~~~~G~~~~~~~g~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE-----------------------VEVIDL------PGPNGMAFDRPDGRL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE-----------------------EEEEES------SSEEEEEEECTTSEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe-----------------------EEEEec------CCCceEEEEccCCEE
Confidence 567887 55544444457778777754321 111111 126677777 66555
Q ss_pred EEEEeCCeEEEEEccCceeEEEecC-----CCCCeEEEEEcCCCCcEEEEEeCC--------CeEEEEeccCcceeeeec
Q 001367 816 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE 882 (1091)
Q Consensus 816 la~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~la~g~~d--------g~i~iwd~~~~~~~~~l~ 882 (1091)
+.+..+.+.++|..+++....... .......+++.| +|++.++.... |.|..++.. ++.....
T Consensus 55 -~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~- 130 (246)
T PF08450_consen 55 -YVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA- 130 (246)
T ss_dssp -EEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-
T ss_pred -EEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEe-
Confidence 445555566669998865443332 334678999999 78877765543 567777776 5543333
Q ss_pred cccCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCc--eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeE
Q 001367 883 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 958 (1091)
Q Consensus 883 ~h~~~V~~l~~spdg~~la-s~s~Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i 958 (1091)
..-.....|+|+||++.|. +-+..+.|..+++.... ....+.+....... ...-.+++..+|++.++. ..+.|
T Consensus 131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence 3345678999999998765 56677889999986432 22223332222221 135689999999988874 67899
Q ss_pred EEEEcCCcceeeeeecCCccCEEEEEEe-eCCCEEEEE
Q 001367 959 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTS 995 (1091)
Q Consensus 959 ~vwd~~~~~~~~~~~~~h~~~v~~v~fs-~dg~~l~t~ 995 (1091)
.++|.. |+.+..+..+ ...+++++|. +|.+.|+..
T Consensus 208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEE
Confidence 999987 8888776655 4589999995 566655544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.1e-06 Score=86.32 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=137.6
Q ss_pred CCeEEEEEccCceeEEEecCC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCC
Q 001367 821 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 898 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 898 (1091)
+|.|..||..+|+.+...... .....+.++. ++..+++++.++.++.||..+|+.+.+... .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999998877532 1222222332 344666678999999999999998877664 22222111 22345
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcceeeeeecCCc
Q 001367 899 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 977 (1091)
Q Consensus 899 ~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~ 977 (1091)
.++.++.++.|..+|..+++..-........... .........++..++++ .++.|..+|.++|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6666778889999999998754321111111110 11222333337767665 589999999999999877544221
Q ss_pred c---------CEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEE
Q 001367 978 V---------PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1048 (1091)
Q Consensus 978 ~---------~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g 1048 (1091)
. .+..-....++ .++.++.+|.+.-+|+.+++.+ +... ... +... ..+ ++..|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~--w~~~---~~~-----~~~~---~~~-~~~~l~~~ 218 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKL--WSKP---ISG-----IYSL---PSV-DGGTLYVT 218 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEE--EEEC---SS------ECEC---EEC-CCTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEE--EEec---CCC-----ccCC---cee-eCCEEEEE
Confidence 1 11222223345 7777777886444499999855 2211 111 1111 223 36778888
Q ss_pred ecCCcEEEEecCCCCCCcc
Q 001367 1049 LTNGEVYVIEPNEPGDTWA 1067 (1091)
Q Consensus 1049 ~~dg~v~~w~~~~~~~~~~ 1067 (1091)
+.++.|..||+..++..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 8999999999999988885
|
... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-05 Score=79.89 Aligned_cols=285 Identities=12% Similarity=0.130 Sum_probs=158.1
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeEEEEeCCCC---
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG--- 621 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~--- 621 (1091)
+.++++|..+++.+..+... -...+..+|+++.+++++ ..-.|.+||..+-.....+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 45999999999988777653 344567899999998754 234699999999988887665532
Q ss_pred --CCCCceEEEccCCCEEEEEEC--CCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCC
Q 001367 622 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDV 697 (1091)
Q Consensus 622 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~ 697 (1091)
.......+++.|++++++..- ...|.|.|+...+.+..+....- .-.-|.+ .
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~~--------------------~ 147 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPSG--------------------N 147 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEEE--------------------T
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEecC--------------------C
Confidence 123456788999998877643 46788889888877665543221 1111111 0
Q ss_pred CcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeecc
Q 001367 698 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKV 777 (1091)
Q Consensus 698 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 777 (1091)
..+.+-+.||++....++............-......-+..-+++..+..++..+-+|.++--++........
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~------- 220 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG------- 220 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE-------
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc-------
Confidence 1122333334433333321111110000111111222233444555555566677778887777655432111
Q ss_pred CCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe---------C--CeEEEEEccCceeEEEecCCCCCeE
Q 001367 778 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---------G--GVISLYIVMTFKTILTIMPPSPTAT 846 (1091)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---------d--g~i~iwd~~~~~~~~~~~~~~~~i~ 846 (1091)
.-|.+.+.... .... ..+.-.-+++++..+.|.+.- + ..|.++|+.+++.+.++.. ...+.
T Consensus 221 --~~~~~~t~~e~-~~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~ 292 (342)
T PF06433_consen 221 --KPWSLLTDAEK-ADGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPID 292 (342)
T ss_dssp --EEEESS-HHHH-HTTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEES
T ss_pred --CcccccCcccc-ccCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccc
Confidence 11221110000 0000 112334567776655555431 1 1489999999999998873 34677
Q ss_pred EEEEcCCCCcEEEEE-eCCCeEEEEeccCcceeeeecc
Q 001367 847 SLAFNPHDNNVIAIG-MDDSTILIYNARSSEVISKLEG 883 (1091)
Q Consensus 847 ~l~~s~~~~~~la~g-~~dg~i~iwd~~~~~~~~~l~~ 883 (1091)
+|+.+.++..+|.+. ..++.+.+||..+|+.+..+.+
T Consensus 293 Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 293 SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 999999666677654 4579999999999999888874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.59 E-value=5e-05 Score=78.72 Aligned_cols=205 Identities=15% Similarity=0.175 Sum_probs=130.3
Q ss_pred EEEecCCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEecc-Ccceeee-
Q 001367 806 CFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVISK- 880 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~-~~~~~~~- 880 (1091)
.+++|.||+++.+.. ...|.|.|+..++.+.++..+. +..+--+ +++-+.+-+.||++.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEec--CCCceEEEecCCceEEEEECCCCCEeEee
Confidence 457788888888776 4679999999999988876443 1112112 33457778889999998887 4554322
Q ss_pred ---eccccCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCc---C-CCCCceEEEEcCCCCEEEE
Q 001367 881 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 881 ---l~~h~~~V-~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~---~-~~~~i~~l~fs~dg~~la~ 952 (1091)
+..-.+++ ..-+++.++..++-.+..|.|+--|+.................. . -++.-.-+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 11122222 23344455556666789999999999887655444443321100 0 0134567899887766655
Q ss_pred -E---ecC-------eEEEEEcCCcceeeeeecCCccCEEEEEEeeCCC-EEEEE-EcCCcEEEEeCCCCceEEEee
Q 001367 953 -V---HET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 953 -~---~d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~-~l~t~-~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
. .++ .|.+||+.+++.+..+... .++.+|..|.|.+ +|++. ..++.+.+||..+|+.+.++.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2 222 4889999999999887653 4577999999887 55444 457899999999999998776
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.9e-07 Score=84.72 Aligned_cols=210 Identities=13% Similarity=0.202 Sum_probs=126.4
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
.|+.+.|+.+. .|+++..++.+......++.+... |+-.....++ ..+..|+++-.+-+.+--+..+++++
T Consensus 38 ~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~~~--~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 38 KLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGIDPF--KVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred EEEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcCce--eeeeccCCCCCcccccccCCceEecC
Confidence 37777787765 468888888888777666554431 1111111111 11334554444444555678899999
Q ss_pred CCCEEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEee-----CCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 416 SKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
.||.+.+.+.+.-..+. ..+. .|.+. -+.+....++ .+.+++ .-+..+.|++...+.+..-......|.
T Consensus 109 ~dg~~~v~s~~~~~~~~--~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~ 183 (319)
T KOG4714|consen 109 ADGSLAVFSTDKDLALM--SRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVT 183 (319)
T ss_pred CCceEEEEechHHHhhh--hhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccch
Confidence 99999999987622111 1111 12221 1222233344 233322 123455666554332221111223488
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcC-CCCEEEEEecCCCCceEEEEEecCC
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
+++-+|... ..+++|+.||.+-+||++...... .+..|..++..+-|+| ++..|++++. +|.+..||..+
T Consensus 184 ~l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 888877644 688999999999999999875444 5677888999999999 5678888876 55699999654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00031 Score=68.05 Aligned_cols=137 Identities=12% Similarity=-0.043 Sum_probs=88.0
Q ss_pred eEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccccccc
Q 001367 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 579 (1091)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1091)
.+++.|+..+.+.--|..+++........ ..+.+-+.- -|++++.+.. .+.+++.+.++|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence 46677777777777777766655543222 223222221 4667877776 4459999999998887777644 1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 580 ~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
--......+++..+++|+.|++.+..|..+...+...+..+.. ..+-+..|-...|..+...|.+.
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEE
Confidence 1123345788999999999999999999999998887766552 23344555223344444445443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.5e-06 Score=87.36 Aligned_cols=291 Identities=13% Similarity=0.136 Sum_probs=188.4
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
-|.+.|+.+.-+... ++.+++.||.++.|.-..-.-+.- ...+..|...|.+++.|-||.++
T Consensus 7 mhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvEf----------------VKhFraHL~~I~sl~~S~dg~L~ 68 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVEF----------------VKHFRAHLGVILSLAVSYDGWLF 68 (558)
T ss_pred cccceeeeEeeehhh--eEEeeecchhhhhcCCCCccceee----------------hhhhHHHHHHHHhhhccccceeE
Confidence 477788888777654 679999999999998543111110 01156688999999999999999
Q ss_pred EEEEC-CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCC-CceEEEEeeCCCcEEEEeCCCCc--eeEEecCCCcc
Q 001367 412 GVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC-KQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAP 487 (1091)
Q Consensus 412 as~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~-~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~ 487 (1091)
.+.+. |..++++|+++-....-+ .+..-.+.+.. ..++.. ..++.++.-.++.+.|+|-..+. ....-.-|..+
T Consensus 69 ~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP 146 (558)
T KOG0882|consen 69 RSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP 146 (558)
T ss_pred eeccCcccceeEEEeeccchhhhc-ccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc
Confidence 99877 999999999875433211 12222222222 222321 11133444567899999965443 23444569999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCC------CCceee---------ecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDS------LGARVD---------YDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~---------~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
|..+.+.+.. ..+++....|.|..|..+. ...... +........++.|+|+|..+...+.
T Consensus 147 V~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~--- 221 (558)
T KOG0882|consen 147 VKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP--- 221 (558)
T ss_pred eEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc---
Confidence 9999986654 5789999999999998763 111111 1222335679999999999988764
Q ss_pred CceEEEEEecCCceeeEEEecccc------------------------------cccceEEEEEcCCCCEEEEEeCCCeE
Q 001367 553 GESFLVEWNESEGAIKRTYQGLQL------------------------------QHNSVSVVHFDTAKDQILAAGDDHVI 602 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~------------------------------~~~~v~~v~~~~~~~~l~~~s~dg~i 602 (1091)
+..|++++..+|+.++.+..... ....-..+.|...+++|+.++--| |
T Consensus 222 -DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-i 299 (558)
T KOG0882|consen 222 -DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-I 299 (558)
T ss_pred -ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-E
Confidence 77799999999877654421110 011233466788889998887655 7
Q ss_pred EEEECCCCeeEEEEeCCCCC-----------------------CCCceEEEccCCCEEEEEECCCeEEEE
Q 001367 603 KIWDMNKVQLLTTIDAGGGL-----------------------PENPRICFNKNGTLLAVIANENRIKIL 649 (1091)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~-----------------------~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1091)
++.++.++...+.+...... ..-..+.+.+|...++++-..+.++++
T Consensus 300 kvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 300 KVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 88999888877766432210 001123355566666666666777777
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.6e-07 Score=99.12 Aligned_cols=267 Identities=14% Similarity=0.158 Sum_probs=167.9
Q ss_pred ccccCCCCCCccccCccccccccCCCc-ccccCcccCC-cCCCCCCcchhhhcccccCCcccCCCchheeeecccCCCCc
Q 001367 260 VTMDRPEDSDILSEKSPVRILNEQAST-VTYPGVSLKN-IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSP 337 (1091)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V 337 (1091)
+.++.|-.++.+..|. .++.+.. .|.|.....- +..++|...++-.+.... ...+-..|.||+..|
T Consensus 50 ~dld~p~~ppr~l~h~----tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss--------~~aIef~lhghsrai 117 (1081)
T KOG0309|consen 50 IDLDDPFTPPRWLHHI----TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS--------SNAIEFVLHGHSRAI 117 (1081)
T ss_pred EeccCCCCCceeeecc----CcchhcceecccCCCCceeEEecCcchhhhhhhhcCC--------ccceEEEEecCccce
Confidence 4555666666666653 4443322 2222222111 445566666655443211 135567889999999
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CCCEEEEEEC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYS 416 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~ 416 (1091)
+.+.|.|...-++|+++.|-.|..||+.+..... ..|+ .-...-+.++|+- ++..|| .+.
T Consensus 118 td~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----ys~~--------------~w~s~asqVkwnyk~p~vla-ssh 178 (1081)
T KOG0309|consen 118 TDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----YSTS--------------SWRSAASQVKWNYKDPNVLA-SSH 178 (1081)
T ss_pred eccccCCCCCcceeeccccccceeeeccCCCcce----eeee--------------cccccCceeeecccCcchhh-hcc
Confidence 9999999998899999999999999998765332 1111 1224556789987 445554 456
Q ss_pred CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-EEecCCCcceEEEeecc
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~ 495 (1091)
.+.|.+||...|.... ..+++|...|+.++|..--.. .+.+++.|++|+.||.+....- ........+|.--++.|
T Consensus 179 g~~i~vwd~r~gs~pl--~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPL--CSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP 255 (1081)
T ss_pred CCceEEEeccCCCcce--EEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence 6679999999887443 367789999999999764332 5889999999999997754322 11222445666666666
Q ss_pred cCCceEEEEEecCCeEEEEecCC----------CCceeeecCCCCcEEEEEEcCCC----------CEEEEEecCCCCce
Q 001367 496 KENIHFIFSISVDGKIKAWLYDS----------LGARVDYDAPGLGCTRMAYSANG----------RRLFSCGTSKEGES 555 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~i~~~~~s~d~----------~~l~~~~~~~~~~~ 555 (1091)
-.+|.++.-.-.+..+.+++.++ ...+..+.+|...|....|-..+ -.|++-+. +.
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk----D~ 331 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK----DQ 331 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec----CC
Confidence 66665554433334555544332 33456777777766555443221 25666654 56
Q ss_pred EEEEEecCC
Q 001367 556 FLVEWNESE 564 (1091)
Q Consensus 556 ~i~iwd~~~ 564 (1091)
.+++|-+.+
T Consensus 332 ~lrlWpI~~ 340 (1081)
T KOG0309|consen 332 TLRLWPIDS 340 (1081)
T ss_pred ceEeeeccH
Confidence 699997754
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00011 Score=77.11 Aligned_cols=221 Identities=16% Similarity=0.120 Sum_probs=142.6
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC-CCCCEEEEEEC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-PDGSLLGVAYS 416 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~ 416 (1091)
.+++|.+....|+++....+.|..|+..+++.... . . .....+++. +++. |+.+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~-~-~~~~G~~~~~~~g~-l~v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------D-L-PGPNGMAFDRPDGR-LYVADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------E-S-SSEEEEEEECTTSE-EEEEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------e-c-CCCceEEEEccCCE-EEEEEc
Confidence 36789983334888888889999999988865421 1 1 126677777 6654 455555
Q ss_pred CCEEEEEEeeCCcccceeEEEe--c-cccCeeEEEEcCCCCceEEEEeeCC--------CcEEEEeCCCCceeEEecCCC
Q 001367 417 KHIVQLYAYHGGSDARQQLEID--A-HVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~~~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
.+ +.++|..+++. ..+.... . .....+.+++.++|+ +.++.... |.|..++.. ++..... ..-
T Consensus 60 ~~-~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGL 133 (246)
T ss_dssp TC-EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEE
T ss_pred Cc-eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEe-cCc
Confidence 55 56669888753 3333332 2 345789999999999 55655433 557777766 5543333 234
Q ss_pred cceEEEeecccCCceEE-EEEecCCeEEEEecCCCCc----ee---eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 486 APVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGA----RV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~----~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
...+.++|++ +++.| ++-+..+.|..++++.... .. .+....+....+++..+|+..++... .+.|
T Consensus 134 ~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I 207 (246)
T PF08450_consen 134 GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRI 207 (246)
T ss_dssp SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEE
T ss_pred ccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEE
Confidence 5567888855 55554 5777888999999875443 11 12222234788999999988777653 5569
Q ss_pred EEEecCCceeeEEEecccccccceEEEEE-cCCCCEEEEEe
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAG 597 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~-~~~~~~l~~~s 597 (1091)
.++|.. |+.+..+.... ..+++++| .++.+.|+..+
T Consensus 208 ~~~~p~-G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELPV---PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-SCEEEEEE-SS---SSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-ccEEEEEcCCC---CCEEEEEEECCCCCEEEEEe
Confidence 999987 88888877664 57899999 47767776644
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-06 Score=89.35 Aligned_cols=298 Identities=13% Similarity=0.124 Sum_probs=190.4
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
|...|+.+..+ ..+++++++-||.++.|.-... +|..+.. ....|...+.+++.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--------------------sGvEfVK---hFraHL~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--------------------SGVEFVK---HFRAHLGVILSLAVSY 63 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCc--------------------cceeehh---hhHHHHHHHHhhhccc
Confidence 55666665544 4567999999999999863210 1111111 1123777888999999
Q ss_pred CCCEEEEEe--CCeEEEEEccCceeEEEecCCCC-CeEEEEEcCCCC-cEEE-EEeCCCeEEEEeccCcc-ee-eeeccc
Q 001367 812 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDN-NVIA-IGMDDSTILIYNARSSE-VI-SKLEGH 884 (1091)
Q Consensus 812 dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~-~~la-~g~~dg~i~iwd~~~~~-~~-~~l~~h 884 (1091)
||.++.+.+ |..++++|+.+...+..++...- .-.++..++.+. ..|| +.-.+|.+.++|-.... .. ..-.-|
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 999999966 68899999987766544332211 112233343111 1333 33467899999976543 22 333459
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee--e------eeccCCCcCCCCCceEEEEcCCCCEEEE-Eec
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR--S------LQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE 955 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~--~------~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d 955 (1091)
..+|..+.+++-+..++|....|.|.-|..+. ..+..+ . -..+-+....-....++.|+|+|..+++ +.|
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence 99999999999999999999999999999884 111000 0 0000111111135789999999999998 788
Q ss_pred CeEEEEEcCCcceeeeeecC-------------------------------C-ccCEEEEEEeeCCCEEEEEEcCCcEEE
Q 001367 956 THLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSI 1003 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~~~~~~-------------------------------h-~~~v~~v~fs~dg~~l~t~~~dg~v~i 1003 (1091)
..|++++..+|+.++.+-.. | ...-+.+.|...|++|+.++-=| |++
T Consensus 223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv 301 (558)
T KOG0882|consen 223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV 301 (558)
T ss_pred cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence 89999999998776542110 1 23346678899999999887765 899
Q ss_pred EeCCCCceEEEeecccc---------cCCCC-c------ccccceeEEEeCCCCCCeEEEEecCCcEEEE
Q 001367 1004 HEASNLEVQCRILSTAY---------LRPTT-S------CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1057 (1091)
Q Consensus 1004 wd~~~~~~~~~~~~~~~---------~~~~~-~------~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w 1057 (1091)
.++.++...+.+..... ..... + .....++ +-+.+ |+.+++++-.-+.++++
T Consensus 302 in~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 302 INLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence 99999988765542210 00000 0 0011111 22555 57888899999999988
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-05 Score=90.07 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=76.3
Q ss_pred EecCCCCEEEEEeCCeEEEEEccC-----ceeEEEecCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEeccCcce----
Q 001367 808 ALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEV---- 877 (1091)
Q Consensus 808 ~~s~dg~~la~~~dg~i~iwd~~~-----~~~~~~~~~~~~~i~~l~~s~~~~~~la~-g~~dg~i~iwd~~~~~~---- 877 (1091)
++.++|++... .+++|.+.|..+ .+.+..+. -......++++| ||+++++ +..+.+|.|+|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34567887665 467899999988 34455444 455678899999 6666655 45688999999987542
Q ss_pred --------eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001367 878 --------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 878 --------~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
+.+.+--.+ -...+|.++|+...|..-|..|..||+..
T Consensus 360 ~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333333233 34578999999888999999999999986
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-06 Score=85.06 Aligned_cols=251 Identities=17% Similarity=0.219 Sum_probs=161.8
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCc--ccceeEEEeccc------------cCeeEEEEcCCCCceEEEE
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHV------------GNVNDLAFSAPCKQISVIT 460 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~~~~s~d~~~~~l~s 460 (1091)
....|+++.|...|.|||+|...|.|.+|.-.... ..+-..++++|. ..|..+.|..++..-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34689999999999999999988999999765432 122223455554 3588898887765556777
Q ss_pred eeCCCcEEEEeCCCCc-------------------ee--------EE---------------e-cCCCcceEEEeecccC
Q 001367 461 CGDDKTIKVWDAVTGS-------------------RT--------YS---------------F-EGHGAPVYSLCPHAKE 497 (1091)
Q Consensus 461 ~~~d~~i~iwd~~~~~-------------------~~--------~~---------------~-~~~~~~v~~~~~~~~~ 497 (1091)
.+.|.+|++|.+.... .+ -. . ..|...|+++.+ +.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~--Ns 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF--NS 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee--cC
Confidence 7889999999874321 00 00 1 235666777777 44
Q ss_pred CceEEEEEecCCeEEEEecCCCCcee---eecCCCC-----cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee-
Q 001367 498 NIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK- 568 (1091)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~-----~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~- 568 (1091)
|.+.+++ +.|-.|.+|+++.....+ .++.+.. -|++..|+|....++.-+. ..|.|.+-|++...+-
T Consensus 183 D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 5445554 557789999987654433 3333332 4778889996544433322 1566999998743211
Q ss_pred ---EE----Eec-----ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCC----------CCCC
Q 001367 569 ---RT----YQG-----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGG----------LPEN 625 (1091)
Q Consensus 569 ---~~----~~~-----~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~v 625 (1091)
.. +.+ ...-...|..+.|+++|+++++-+. -+|.|||.+. ..++.+++.+.. ...|
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 00 111 1111256888999999998887654 5899999875 456666654421 0111
Q ss_pred ---ceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 626 ---PRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 626 ---~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
..+.|+.|.+.+.+|+..+...+|-..
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccc
Confidence 357889899999999988888777643
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-05 Score=80.53 Aligned_cols=222 Identities=13% Similarity=0.081 Sum_probs=138.1
Q ss_pred CCEEEEEEeeCCcccceeEEEec-cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecc
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1091)
+|+|..||..+|+.+-.. .+.. ... ..+. ..+++. .+++++.++.|..||..+|+.+.++.. ..++...-
T Consensus 2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~-~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~--- 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-DLGPGIGG-PVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP--- 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSSCSS-EEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE---
T ss_pred CCEEEEEECCCCCEEEEE-ECCCCCCC-ccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee---
Confidence 678899999888765533 1211 111 1111 233455 577778899999999999999988765 22221111
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCceeee-cCCC---CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEE
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1091)
..++..++.++.++.+..+|..+++..... .... ..........++..++++.. .+.|..+|+.+|+.+...
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEE
T ss_pred eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEe
Confidence 112246677778889999999999888873 3221 11122223334777777764 556999999999998887
Q ss_pred ecccccc-c------ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC
Q 001367 572 QGLQLQH-N------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 572 ~~~~~~~-~------~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
....... . .+..-....++ .++.++.++.+.-+|..+++.+.... .. .+.. ....++..+++++.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTT
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCC
Confidence 7633111 1 11222222334 77778878854444999999765333 11 1222 2456778888888999
Q ss_pred eEEEEECCCCCee
Q 001367 645 RIKILETPESNSV 657 (1091)
Q Consensus 645 ~i~iwd~~~~~~~ 657 (1091)
.+..||..+++..
T Consensus 223 ~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 223 RLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCCEE
Confidence 9999999998664
|
... |
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-07 Score=91.13 Aligned_cols=173 Identities=17% Similarity=0.251 Sum_probs=121.1
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhhh
Q 001367 5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFE 75 (1091)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~ 75 (1091)
+.-+-|+|..||..+||..+|..|-++|.+. .++..++++|++|+...|+...+.= ..+. +..-.+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 3457899999999999999999999999875 2378889999999999999887642 1121 112237799
Q ss_pred hhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCCChHHHHHHHHHHHHhhhcC
Q 001367 76 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEAN 155 (1091)
Q Consensus 76 i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~ 155 (1091)
+..|.|+||+..+++.+|+.+.++++.|....+...++....++.++...+-..+ .+-....| ++.|+.++-.+
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sky---~~l~~~~r---w~~l~~lF~s~ 266 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSKY---LNLLTADR---WSVLADLFLSE 266 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcccc---cCcccHHH---HHHHHHHhhHH
Confidence 9999999999999999999999999999987788888888888888655332211 11112223 23444333332
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHh-cCCC
Q 001367 156 PILQGKLKFPSIKRQRLRRLINQSLNWQHV-HCAN 189 (1091)
Q Consensus 156 ~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~-~~~~ 189 (1091)
.. ..+.+|.-| +|.++|+--+..|.. .|.+
T Consensus 267 a~--~l~~i~~~~--~L~~~l~~GLsalKTp~c~~ 297 (389)
T KOG0396|consen 267 AL--KLFGIPINP--ALTIYLQAGLSALKTPRCLN 297 (389)
T ss_pred HH--HHhCCCCCc--HHHHHHHhhhhhcccccccc
Confidence 22 112223223 488888877777753 3443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.3e-05 Score=85.75 Aligned_cols=184 Identities=11% Similarity=0.071 Sum_probs=119.6
Q ss_pred EEecCCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEeccCcceeee
Q 001367 807 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSSEVISK 880 (1091)
Q Consensus 807 l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d---g-~i~iwd~~~~~~~~~ 880 (1091)
+-++|||+.+...+ .+.+.+.|.++.+...++.... ....++++| +++++++.+.+ | ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 44678998776555 4779999999988877766433 456789999 78888777632 1 233322222111111
Q ss_pred eccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC----CceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--e
Q 001367 881 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 954 (1091)
Q Consensus 881 l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~ 954 (1091)
+.- ..+ -++.++|++... .++.|.+.|..+ +. .....+.... ....+++||||++++++ .
T Consensus 276 fni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 276 FNI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred Ech--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCC
Confidence 110 000 133457887665 367799999887 21 1122233322 35689999999999984 5
Q ss_pred cCeEEEEEcCCcce------------eeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 955 ETHLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 955 d~~i~vwd~~~~~~------------~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
+.++.|+|+++.+. ..+... ...-...+|.++|....|-.-|..|..|++..
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 78999999988653 222222 33445679999999888889999999999987
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.7e-05 Score=90.19 Aligned_cols=276 Identities=10% Similarity=0.172 Sum_probs=156.2
Q ss_pred cccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC
Q 001367 733 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812 (1091)
Q Consensus 733 ~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 812 (1091)
...|.++.|..++..++.+...|.+.+-|....... ..+ .-...|.+++||||
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--------------------------ivg-~vd~GI~aaswS~D 120 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE--------------------------IVG-NVDNGISAASWSPD 120 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee--------------------------eee-eccCceEEEeecCC
Confidence 468999999999999999999999988653322110 000 24678999999999
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecCC-----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc-eeeeeccccC
Q 001367 813 DAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEGHSK 886 (1091)
Q Consensus 813 g~~la~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-~~~~l~~h~~ 886 (1091)
++.++....+..-++...+..++....-+ .+....+-|-. .... .-| ..|.....+....+ ......-| +
T Consensus 121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTq-frg-s~gr~~~~~~~~~ek~~~~~~~~-~ 196 (1265)
T KOG1920|consen 121 EELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQ-FRG-SEGRQAARQKIEKEKALEQIEQD-D 196 (1265)
T ss_pred CcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-ccee-eec-chhhhcccccccccccccchhhc-c
Confidence 99999988655445554555444332211 01111222211 0000 001 11111111111000 00111112 2
Q ss_pred CeEEEEECCCCCEEEEEe----CC-CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE----EecCe
Q 001367 887 RVTGLVFSDALNILVSSG----GD-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETH 957 (1091)
Q Consensus 887 ~V~~l~~spdg~~las~s----~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~----~~d~~ 957 (1091)
.=+.+.|--||.++|+.. .+ +.|+|||-+. .... .-.... ..-.+++|-|.|.++|+ .+++.
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns--~se~~~------~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNS--TSEPVE------GLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhc--ccCccc------ccccceeecCCCCeEeeeeecCCCCc
Confidence 235699999999999732 23 7899999883 2211 011111 13458999999999998 25667
Q ss_pred EEEEEcCCcceeeeee---cCCccCEEEEEEeeCCCEEEE---EEcCCcEEEEeCCCCceEEEeecccccCCCCcccccc
Q 001367 958 LAIYEAEELTCLKQWF---PISSVPISQATFSCDCRMVFT---SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1031 (1091)
Q Consensus 958 i~vwd~~~~~~~~~~~---~~h~~~v~~v~fs~dg~~l~t---~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1031 (1091)
|.++.-. |-.-..+. +.....|..++|+.++..|++ ......|++|-+.+-..-.... -..+.. .
T Consensus 268 IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~-----~- 338 (1265)
T KOG1920|consen 268 IVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK-----A- 338 (1265)
T ss_pred EEEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc-----c-
Confidence 9999854 32222221 112445999999999999987 4444559999998876533222 011111 0
Q ss_pred eeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 1032 PHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1032 ~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
-+.|+|.....|.+-..+|...+.++
T Consensus 339 --~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 339 --LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred --cccccCCCceeEEEEecCCcEEEEEE
Confidence 14566655555555556666655554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.6e-05 Score=83.64 Aligned_cols=267 Identities=13% Similarity=0.186 Sum_probs=146.7
Q ss_pred cCCCceEEEEE--------cCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 343 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 343 spdg~~llasg--------~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
|||++++|+.- +..+.+.|+|+.+++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78998766522 123678899998876553 11225678899999999999998
Q ss_pred ECCCEEEEEEeeCCcccceeEEEec-------c---------ccCeeEEEEcCCCCceEEEEeeCCCcE-----------
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKTI----------- 467 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~~s~d~~~~~l~s~~~d~~i----------- 467 (1091)
. ++.|.+++..++...+. +..| - -+.-..+.|||||+++.++... +..|
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d-~~~v~~~~~~~~~~~ 136 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD-EREVPEYPLPDYSPP 136 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE--TTS-EEEEEEESSS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC-CcCCceEEeeccCCc
Confidence 6 56799999877743322 1122 0 1233678899999953333222 2222
Q ss_pred ------------------------EEEeCCCCceeEE-e----cCCCcceEEEeecccCCceEEEEE--ecCC---eEEE
Q 001367 468 ------------------------KVWDAVTGSRTYS-F----EGHGAPVYSLCPHAKENIHFIFSI--SVDG---KIKA 513 (1091)
Q Consensus 468 ------------------------~iwd~~~~~~~~~-~----~~~~~~v~~~~~~~~~~~~~l~s~--~~dg---~i~i 513 (1091)
.|+|+.+++.... . ..-..-+..+.|.+ ++..++.. ..+. .+.+
T Consensus 137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEE
T ss_pred cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEE
Confidence 2334433332110 0 11222344445533 33423222 2221 2556
Q ss_pred EecCCCCceeeecCC-CCc---EEEEEEc-CCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceE-EEEEc
Q 001367 514 WLYDSLGARVDYDAP-GLG---CTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS-VVHFD 587 (1091)
Q Consensus 514 wd~~~~~~~~~~~~~-~~~---i~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~v~~~ 587 (1091)
+|..++......... ... .....+. +++..++..+. ++|-..|++++..++.......+ . -.|. .+.++
T Consensus 215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G-~---~~V~~i~~~d 289 (353)
T PF00930_consen 215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSG-D---WEVTSILGWD 289 (353)
T ss_dssp EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-S-S---S-EEEEEEEE
T ss_pred EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccC-c---eeecccceEc
Confidence 676665554433221 111 2245554 77777776665 67788999999988875433333 2 4563 47788
Q ss_pred CCCCEEEE-EeC----CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 588 TAKDQILA-AGD----DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 588 ~~~~~l~~-~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
++++.++. +.. ...++.-++..+..+..+...... ...+.|||++++++....
T Consensus 290 ~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 290 EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 88877765 443 335666677723344555444331 148999999998886554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.1e-07 Score=63.26 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.0
Q ss_pred cceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 875 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 875 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
|+++.++.+|.+.|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.9e-07 Score=85.40 Aligned_cols=133 Identities=22% Similarity=0.288 Sum_probs=96.0
Q ss_pred HHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001367 38 MKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA 116 (1091)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1091)
...++++|++|+++.|+..++.. +.+... ...+.|.|++|+|+|++..++..+|+.+.|+++.|......+.++.+.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~--~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR--NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc--CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 57899999999999999999875 222111 123889999999999999999999999999999766543556677777
Q ss_pred hhcccccccc--hhccccccCCChHHHHHHHHHHHHhhhcCccccccccCCCcc-hHHHHHHHHHHHHHH
Q 001367 117 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ 183 (1091)
Q Consensus 117 ~ll~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~q 183 (1091)
.+|...+..+ ...+....+ .+.|..+.+.+.+.+-...- +| .+.|..++.+....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~~--~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELLS--PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHhC--hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 7777766544 223222212 36788888888876655322 33 567888888776554
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-06 Score=82.08 Aligned_cols=195 Identities=15% Similarity=0.201 Sum_probs=117.1
Q ss_pred CCcEEEEEeCCCeEEEEeccCcce-eeeecc-ccCCeEEEEECCCCCEEEEEe-----CCCcEEEEEcCCCceeeeeeee
Q 001367 854 DNNVIAIGMDDSTILIYNARSSEV-ISKLEG-HSKRVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQ 926 (1091)
Q Consensus 854 ~~~~la~g~~dg~i~iwd~~~~~~-~~~l~~-h~~~V~~l~~spdg~~las~s-----~Dg~i~vwd~~~~~~~~~~~~~ 926 (1091)
-+..++++..||.+.+++.+.-.. ..+... |.+. .+.+....++.+.+++ .-+..+.|+++..+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~-------- 170 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK-------- 170 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccc--------
Confidence 456789999999999998775211 111111 2221 1122223344444322 12335666665522
Q ss_pred ccCCCcCCCCCceEEEEcCCCCEEEE-E-ecCeEEEEEcCCcceeeeeecCCccCEEEEEEee-CCCEEEEEEcCCcEEE
Q 001367 927 TPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSI 1003 (1091)
Q Consensus 927 ~~~~~~~~~~~i~~l~fs~dg~~la~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~-dg~~l~t~~~dg~v~i 1003 (1091)
.+.........|++++-.|..+.+++ | .||.+.+||++......+++..|..+++.+.|.| ++..|+++++||.+--
T Consensus 171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 11111111124888999998777766 4 6789999999999888888899999999999999 5688999999999999
Q ss_pred EeCCCCceEEEee---cccccCCCCcccccc-----e---eEE-EeCCCCCCeEEEEecCCcEEEEe
Q 001367 1004 HEASNLEVQCRIL---STAYLRPTTSCLHVY-----P---HAI-AAHPLKPTQFAVGLTNGEVYVIE 1058 (1091)
Q Consensus 1004 wd~~~~~~~~~~~---~~~~~~~~~~~~~v~-----~---~~~-~~~p~d~~~l~~g~~dg~v~~w~ 1058 (1091)
||..+.-+.+... ...|+....-.+.|. + +++ +|+- -|..|++|++-+.|++.+
T Consensus 251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec-cCceEEeccccceEEEec
Confidence 9987532211111 112333221111110 0 011 1222 267899999999988865
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.3e-05 Score=88.31 Aligned_cols=281 Identities=11% Similarity=0.169 Sum_probs=160.6
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
..+.|.++.|..++..+ ..+..+|.|.+-|.++....- ...-...|.+++||||++.++
T Consensus 67 gd~~i~s~~fl~d~~~i-~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~ 125 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSI-CVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLA 125 (1265)
T ss_pred CCcceEEEEEecccceE-EEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEE
Confidence 34699999999998854 667788999999988876543 223457999999999999999
Q ss_pred EEECCCEEEEEEeeCCcccceeEEEec---cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce-eEEecCCCcce
Q 001367 413 VAYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPV 488 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v 488 (1091)
..+..+++.+-+-. -..+... .+.. ..+....+-|-....+ +.|+ .|.....+....+. +.... -...-
T Consensus 126 liT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~-~~~~~ 198 (1265)
T KOG1920|consen 126 LITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIE-QDDHK 198 (1265)
T ss_pred EEeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchh-hccCC
Confidence 99988877664321 1111100 0100 0111222333222221 1111 11111111110000 00001 11122
Q ss_pred EEEeecccCCceEEEEE-----ecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 489 YSLCPHAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
++++| .+||+++++. ...+.|++||-+ +.....-....+--.+++|-|.|..+++.....+ +..|.++..+
T Consensus 199 ~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN 274 (1265)
T KOG1920|consen 199 TSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN 274 (1265)
T ss_pred ceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC
Confidence 34566 6788888873 333789999876 3332233333334567999999999998876544 5568888744
Q ss_pred C---ceeeEEEecccccccceEEEEEcCCCCEEEE---EeCCCeEEEEECCCCeeEE--EEeCCCCCCCCceEEEccCC-
Q 001367 564 E---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILA---AGDDHVIKIWDMNKVQLLT--TIDAGGGLPENPRICFNKNG- 634 (1091)
Q Consensus 564 ~---~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~---~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~~- 634 (1091)
. |+....+.... ..+..++|+.++..|++ ......|++|-..+..... .+..... .-+.|+|..
T Consensus 275 GL~hg~f~l~~p~de---~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~ 347 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDE---KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTE 347 (1265)
T ss_pred CccccccccCCcccc---cchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCc
Confidence 2 22222222222 44899999999998887 4455669999988765433 3332222 237888833
Q ss_pred CEEEEEECCCeEEEEECC
Q 001367 635 TLLAVIANENRIKILETP 652 (1091)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~ 652 (1091)
..+.+-..+|...+++..
T Consensus 348 ~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 348 KTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred eeEEEEecCCcEEEEEEE
Confidence 344444466776666543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-05 Score=79.59 Aligned_cols=251 Identities=13% Similarity=0.152 Sum_probs=146.5
Q ss_pred eecCCCccEEEEEECCCCC-EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1091)
++.+|...|..++|||... +|..++.+..|+|.|+++...+. ....| ..+++++|.-|... +++.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999777 78889999999999999975544 34455 78999999998875 8899999999999
Q ss_pred EeCCCCce-eEEecC--CCcceEEEeeccc----CCceEEEEEecCCeEEEEecCCCC--ceeeec-CCCCcEEEEEEcC
Q 001367 470 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLG--ARVDYD-APGLGCTRMAYSA 539 (1091)
Q Consensus 470 wd~~~~~~-~~~~~~--~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~-~~~~~i~~~~~s~ 539 (1091)
||++..+- +..+.+ ...+|..++..+. +.+.+++....+ +..|.+.-.. ...... ...+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 223322 2344544443211 112234433332 3345443222 222222 2244566777777
Q ss_pred CCCEEEEEecCCCCceEEE----EEecCCceeeEEEe----ccccc-ccceEEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 001367 540 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ----GLQLQ-HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 609 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~----~~~~~-~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd~~~ 609 (1091)
-.+.++....+......++ --|...|..+-.-+ +.... ...-..+.-.++.++++. +...+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666666554321111111 11222232221111 10000 001111222345566655 55778899999999
Q ss_pred CeeEEEEeCCCCCCCCceEEEcc-C-CCEEEEEECCCeEEEEECC
Q 001367 610 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP 652 (1091)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iwd~~ 652 (1091)
++.++++.... .|..++... + +.+|++-++ ..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLTD-DRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhheec-ceEEEEecC
Confidence 99999998763 355555443 2 345665554 578887654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.9e-06 Score=93.84 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=130.7
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEE
Q 001367 812 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 890 (1091)
Q Consensus 812 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 890 (1091)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 334455554 677888999998888877655555665555 6789999999999999999999999999999999976
Q ss_pred EEECCCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCC--CCEEEEEecCeEE
Q 001367 891 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLA 959 (1091)
Q Consensus 891 l~~spdg~~las~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d--g~~la~~~d~~i~ 959 (1091)
+.. .|+.|+++|. |..|+|||+..-+... +++.+.+ ..-+.|.|. .+..+++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 5889999885 5568999998733211 2222222 245677774 3444457889999
Q ss_pred EEEcCC---cceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 960 IYEAEE---LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 960 vwd~~~---~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
+-|..+ ...-......-...+..+.+|++|..++.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 988332 2111111222255599999999999999999999999997
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0002 Score=79.23 Aligned_cols=304 Identities=12% Similarity=0.096 Sum_probs=157.3
Q ss_pred cCCCCEEEEEecC-----CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 001367 538 SANGRRLFSCGTS-----KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1091)
Q Consensus 538 s~d~~~l~~~~~~-----~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1091)
|||+++++..... .+..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|++++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 5788887764321 11245689999999876655444 2 5778889999999988876 57899999888754
Q ss_pred EEEEeCCCC---------------CCCCceEEEccCCCEEEEEECC-CeEEEEECC---CCCeecccccccccceeeeec
Q 001367 613 LTTIDAGGG---------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSVN 673 (1091)
Q Consensus 613 ~~~~~~~~~---------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~ 673 (1091)
.+....... ...-..+.||||+++|+....| ..+..+.+. .... .-..+..+.+.
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~YP 149 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRYP 149 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCcccccccC
Confidence 433221100 1223678899999999877543 334333322 1110 00011112221
Q ss_pred cccccccccccCCcccCCCCCCCCCcccccccccc--cccccccccCCcccceeecC--CccccccEEEEEEecCCCeEE
Q 001367 674 PISTVTGAGIANGSVSNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 674 ~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~--i~~w~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
. .|...-. +.++++..+... .+..+ .......+..+.|+++++.++
T Consensus 150 k---------------------------~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 150 K---------------------------AGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp B---------------------------TTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred C---------------------------CCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcEEE
Confidence 0 1111112 233444322211 11111 022466788999999998444
Q ss_pred EeecC---ceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEec-CCCCEEEEEe--CC-
Q 001367 750 ALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--GG- 822 (1091)
Q Consensus 750 ~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~la~~~--dg- 822 (1091)
....+ ..+.+.. .|+.++.+.........+--.......+. +++..++..+ +|
T Consensus 200 ~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp EEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred EEEcccCCCEEEEEE--------------------EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 44332 2233222 23333332222211111122233355554 7777666555 44
Q ss_pred -eEEEEEccCceeEEEecCCCCCeEE-EEEcCCCCcEEEEEeCCC----eEEEEeccCcceeeeeccccCCeEEEEECCC
Q 001367 823 -VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDA 896 (1091)
Q Consensus 823 -~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~~~~~la~g~~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd 896 (1091)
.|.+++..++.. +.+....-.|+. +.++++++.+..++..++ .|+.-++.++..+..+....+.-..+.|||+
T Consensus 260 ~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spd 338 (353)
T PF00930_consen 260 RHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPD 338 (353)
T ss_dssp EEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TT
T ss_pred cEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCC
Confidence 477777766663 355545556744 678885555656666533 6666677723334555443333368999999
Q ss_pred CCEEEEE
Q 001367 897 LNILVSS 903 (1091)
Q Consensus 897 g~~las~ 903 (1091)
|++++-.
T Consensus 339 g~y~v~~ 345 (353)
T PF00930_consen 339 GKYYVDT 345 (353)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9998743
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00083 Score=65.22 Aligned_cols=115 Identities=14% Similarity=0.091 Sum_probs=80.6
Q ss_pred EcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEE
Q 001367 342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 421 (1091)
Q Consensus 342 fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~ 421 (1091)
.-+|.+.+++.|+..+.++--|..+|+..-+.- -...|.+-+.- -|++++.|...|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 345566788999999999999999998764311 11233332222 577899999999999
Q ss_pred EEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 422 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 422 iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
+-+.++|+.......+. .--......+++. ++..++.|++.+..|..+..++.+.+
T Consensus 77 fl~~~tGs~~w~f~~~~---~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILE---TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEEecchhheeeeeehh---hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecc
Confidence 99999997655332221 1112234456777 89999999999999999988887754
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.1e-07 Score=62.06 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.1
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd 363 (1091)
++++++.+|.+.|++++|+|+++ ++++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46788999999999999999998 679999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=87.66 Aligned_cols=167 Identities=16% Similarity=0.112 Sum_probs=125.1
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 417 (1091)
+.++||-+-.-+-++.+.+-.|-+-|++||-... + ..++.|.++.|...+.++..|...
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence 4447764432233445566789999999985432 2 256889999999999999999999
Q ss_pred CEEEEEEeeCCccc--ceeEEEeccccCeeEEEEcC-CCCceEEEEeeCCCcEEEEeCCCCce---eEEecCCCcceEEE
Q 001367 418 HIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL 491 (1091)
Q Consensus 418 ~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~ 491 (1091)
|.|...|+..+..- ..... --|...|+++..-. +++ +|++.+.+|.|++||.+--++ +.++.||-..-..+
T Consensus 274 geI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 99999999875221 11112 25888999998877 555 789999999999999987666 88889997766555
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecCC
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 528 (1091)
-++..+....+++++.|-..+||.++.+....++...
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 5555666678999999999999999988777665544
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00017 Score=79.90 Aligned_cols=138 Identities=10% Similarity=0.079 Sum_probs=100.9
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..|.--+++..++ +++.|+.-|.+.+++-.+|+..... ..+-.+.+..+..|++..++|.|
T Consensus 34 ~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAag 94 (726)
T KOG3621|consen 34 ARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAAG 94 (726)
T ss_pred ceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhhh
Confidence 3666667788887 5699999999999998888765421 22345677788899999999999
Q ss_pred ECCCEEEEEEeeCCcccceeEEE---eccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC----ceeEEecCCCcc
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGAP 487 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~ 487 (1091)
+..|.|.++-+..+........- ..|...|++++|++|+. .+++|...|.|..-.+.+. ...+.+......
T Consensus 95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~ 172 (726)
T KOG3621|consen 95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE 172 (726)
T ss_pred cCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence 99999999988874432221111 13678999999999999 7999999999998887772 112333344566
Q ss_pred eEEEee
Q 001367 488 VYSLCP 493 (1091)
Q Consensus 488 v~~~~~ 493 (1091)
|..+..
T Consensus 173 IVQlD~ 178 (726)
T KOG3621|consen 173 IVQLDY 178 (726)
T ss_pred eEEeec
Confidence 666654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0019 Score=68.70 Aligned_cols=278 Identities=14% Similarity=0.133 Sum_probs=137.1
Q ss_pred EEcCCCceEEEEEcCCCc--EEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC-ccEEEEEECCCCCEEEEEECC
Q 001367 341 DFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSK 417 (1091)
Q Consensus 341 ~fspdg~~llasg~~dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d 417 (1091)
+|.+||++||.++..||. +.+-|+.+++..+ |+... .......++|+++.++.....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 789999989998877665 6666778887664 33322 222246778999988877667
Q ss_pred CEEEEEEeeCCcccceeEEEeccccCeeEEEEc--CCCCceEEEEee----------------------CCCcEEEEeCC
Q 001367 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDAV 473 (1091)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~~~l~s~~----------------------~d~~i~iwd~~ 473 (1091)
..|+--|+.+.+.. .+ .......+-...|. .|+. .++..- ..+.|.--|+.
T Consensus 102 ~~l~~vdL~T~e~~-~v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEER-VV--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EE-EE--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEE-EE--EECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 78888888887532 22 23334444445553 4555 332221 13345556777
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEec---CCe-EEEEecCCCCcee-eecC--CCCcEEEEEEcCCCCEEEE
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGARV-DYDA--PGLGCTRMAYSANGRRLFS 546 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~-i~iwd~~~~~~~~-~~~~--~~~~i~~~~~s~d~~~l~~ 546 (1091)
+|+....+. -...+..+.|+|.. ..+|..|-+ +.. -+||-+++..... .+.. ....+.-=-|.|||..+..
T Consensus 177 tG~~~~v~~-~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGERKVVFE-DTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T--EEEEEE-ESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCceeEEEe-cCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 776544333 45566777787653 334444432 221 3677665543322 2221 2223455568999998876
Q ss_pred Eec-CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE-EeCC---------------CeEEEEECCC
Q 001367 547 CGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDD---------------HVIKIWDMNK 609 (1091)
Q Consensus 547 ~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~d---------------g~i~iwd~~~ 609 (1091)
.+. .+..+..|.-+|+.+++....... ....-+--++||++++- |+.. .-|++++.+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~ 329 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA 329 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence 443 334466788899998865433222 12334455788887766 3321 2567788887
Q ss_pred CeeEEEEeCC--------CCCCCCceEEEccCCCEEEEEEC-CCeEEEEE
Q 001367 610 VQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE 650 (1091)
Q Consensus 610 ~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd 650 (1091)
+......... .....-....|+||+++++..++ .|...||-
T Consensus 330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 7654322211 01112357899999998877665 56655553
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=9e-05 Score=76.23 Aligned_cols=250 Identities=13% Similarity=0.105 Sum_probs=140.1
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
.+.+.+|..-|..++|||..+-|+..++.+..|+|.|+++...+.. +..| ..+.+++|.-
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL 245 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence 4477889999999999999876889999999999999999887754 3345 7899999998
Q ss_pred CC-CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEc------CCCCceEEEEeeCCCcEEEEeCCC--Cce
Q 001367 407 DG-SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------APCKQISVITCGDDKTIKVWDAVT--GSR 477 (1091)
Q Consensus 407 dg-~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~d~~~~~l~s~~~d~~i~iwd~~~--~~~ 477 (1091)
|. .++..|...|.|.|||+...+.......-.-...+|..++.- +-|. +++....+ +..|++.- +..
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence 65 466667788999999998654322111111122344444432 2333 34444432 45665432 111
Q ss_pred eEEec-CCCcceEEEeecccCCceEEEEEecCCe------EEE-EecCCCCceeee-cCC-CC------cEEEEEEcCCC
Q 001367 478 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK------IKA-WLYDSLGARVDY-DAP-GL------GCTRMAYSANG 541 (1091)
Q Consensus 478 ~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~------i~i-wd~~~~~~~~~~-~~~-~~------~i~~~~~s~d~ 541 (1091)
...+. +..+...++...+..+ ..|++.-.+.+ +-. -|...+..+... ..+ +. .-..+.-.++.
T Consensus 322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 22121 1233444444443322 33443322110 000 011111111100 000 00 11122334566
Q ss_pred CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEc-CCCCEEEEEeCCCeEEEEECC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~s~dg~i~iwd~~ 608 (1091)
++++..+. ..+.+.+||..+.+.++.+.... +|..++.. -++.-++..-.|..++||..+
T Consensus 401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence 66665543 46779999999999999988754 66666543 234434444456677777654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.9e-06 Score=84.01 Aligned_cols=135 Identities=16% Similarity=0.223 Sum_probs=101.7
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CCCEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 411 (1091)
.++.|.++.|...+. |+..|...|.|...|+..+..=.. | |.. ---|...|+++..-. ++++|
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~-----~----~a~------rlyh~Ssvtslq~Lq~s~q~L 314 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNG-----W----CAQ------RLYHDSSVTSLQILQFSQQKL 314 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCC-----c----ceE------EEEcCcchhhhhhhccccceE
Confidence 456899999999887 889999999999999977521100 0 000 112889999999888 89999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1091)
.+.+.+|+|++||..--++.+......||...-..+-+.-+...-.+++++.|...+||.+..|..+.++..
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 999999999999998766644455678887655444443332222788999999999999999999988754
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00024 Score=80.43 Aligned_cols=199 Identities=13% Similarity=0.131 Sum_probs=127.7
Q ss_pred EECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC-----cEEEEeCCCC--
Q 001367 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-----TIKVWDAVTG-- 475 (1091)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~-----~i~iwd~~~~-- 475 (1091)
+|++.+..+|.|+.+|.|.+.+-.- +....+..+...+...-+.-+++. +|++.+.|+ .++|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc----eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 4788999999999999887776432 222345666666333444444543 677777665 4899998632
Q ss_pred ----cee--EEecC-----CCcceEEEeecccCCceEEEEEecCCeEEEEecCC----CCceeeecCCCCcEEEEEEcCC
Q 001367 476 ----SRT--YSFEG-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSAN 540 (1091)
Q Consensus 476 ----~~~--~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~d 540 (1091)
.++ +.+.. ...++.+++++. +-..+|+|-.+|.|..+.=+- +...........+|+++++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~--~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSE--DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEc--cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 233 12222 245677777753 567899999999999884322 1222233345569999999999
Q ss_pred CCE-EEEEecCCCCceEEEEEecCCceee-EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001367 541 GRR-LFSCGTSKEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 541 ~~~-l~~~~~~~~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1091)
++. ++++. ...|.+|.+....+. ..+..+ +..+.|..+++....+++++. ..+.+|+.....+-..+.
T Consensus 183 ~~s~lFv~T-----t~~V~~y~l~gr~p~~~~ld~~---G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVAT-----TEQVMLYSLSGRTPSLKVLDNN---GISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEe-----cceeEEEEecCCCcceeeeccC---CccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 987 33333 334888888744422 223333 478899999887665666654 468999987655555554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.5e-05 Score=84.83 Aligned_cols=188 Identities=12% Similarity=0.127 Sum_probs=129.4
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 922 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~ 922 (1091)
..++|++++ +++++-|+.+|.|++++.+. .. .+...|+.. ..+|.+++|||.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456778885 46999999999999999773 33 444446554 56899999999999999999887553322
Q ss_pred eeeeccCCCcCCCCCceEEEEcCC-----CCEEEEEecCeEEEEEcCCcce-eeeeecCCccCEEEEEEeeCCCEEEEEE
Q 001367 923 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 923 ~~~~~~~~~~~~~~~i~~l~fs~d-----g~~la~~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
..++ .++.+++++|| .+.+++|....+.++.-.-... .........++|.++.|. |.++|=++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 2221 25889999998 4566665443377776432111 111233337899999987 67888777
Q ss_pred cCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 997 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 997 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
.+| |+|||+.++..+..+.+....+.. ...+..+.|.+ ...|+.| ...+|.+..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~----e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVRP----ELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCCc----ccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 666 999999999998887755533322 34555678886 3555554 56678888887
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0006 Score=77.41 Aligned_cols=202 Identities=11% Similarity=0.110 Sum_probs=129.2
Q ss_pred EEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCcc-EEEEEECCCCCEEEEEECCC-
Q 001367 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWSPDGSLLGVAYSKH- 418 (1091)
Q Consensus 341 ~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spdg~~las~~~d~- 418 (1091)
+|++.+. .+|.|+.+|.|.+.+-.- +.+.. +..+... |..+-...+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~-~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSF-QLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccc-eeeeh-------------------heecchhhhhHhhcccCceEEEEEeecCC
Confidence 4567776 679999999888776321 11111 3334445 44444444446888776654
Q ss_pred ----EEEEEEeeCCcccc---ee--EEEec-----cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC----CCceeEE
Q 001367 419 ----IVQLYAYHGGSDAR---QQ--LEIDA-----HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV----TGSRTYS 480 (1091)
Q Consensus 419 ----~i~iwd~~~~~~~~---~~--~~~~~-----h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~----~~~~~~~ 480 (1091)
.++||+++.-+.-. .. ..+.. ...++.+++.+.+-+ .+|.|-.+|.|..+.-+ .|....-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence 59999997432111 11 11222 345789999999977 78999999999988422 1222222
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce-eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
......+|+.+++.. ++..++.+.....|.+|.+...... ..+..++.+..|.++++....+++++ ...+.+
T Consensus 167 ~~~~~~pITgL~~~~--d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~f 239 (933)
T KOG2114|consen 167 SHRGKEPITGLALRS--DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLYF 239 (933)
T ss_pred eccCCCCceeeEEec--CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEEE
Confidence 233467899999854 4445445555678899998855533 34777888899999988777566665 445999
Q ss_pred EecCCceeeEEEe
Q 001367 560 WNESEGAIKRTYQ 572 (1091)
Q Consensus 560 wd~~~~~~~~~~~ 572 (1091)
|+......-..|.
T Consensus 240 Y~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 240 YDSDGRGPCFAFE 252 (933)
T ss_pred EcCCCcceeeeec
Confidence 9987666555555
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.6e-05 Score=84.63 Aligned_cols=186 Identities=14% Similarity=0.113 Sum_probs=141.2
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEE
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1091)
.++.|+....+..+|+.+++..+...-..+.|.-++. +++.+.+|...|+|.+-|.++.+.+.++..|.+.+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD-- 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD-- 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceee--
Confidence 5777888888999999998887777655555666654 6679999999999999999999999999999998865
Q ss_pred EcCCCCEEEEEecCCC-----CceEEEEEecCCceeeEEEecccccccceEEEEEcCC-CCEEEEEeCCCeEEEEECCC-
Q 001367 537 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 609 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~s~dg~i~iwd~~~- 609 (1091)
|+-.|+.|++||.+.. .|..|.+||++..+.+..+..+. ...-+.|+|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~----~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY----GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc----CchhhhhcccccceEEEEecccceeecccccc
Confidence 5567899999987542 36679999999887776665544 2245677776 35677788999999988332
Q ss_pred Cee-EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 610 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 610 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
+.+ ......+...+.+..+.+++++..++.|..+|.|.+|.-.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 111 1122222222358899999999999999999999999844
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0052 Score=71.13 Aligned_cols=137 Identities=12% Similarity=0.092 Sum_probs=78.3
Q ss_pred EEEEEecCCeEEEEecCCCCceeeecCCCC------cEE--EEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEe
Q 001367 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGL------GCT--RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~--~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
.++.++.++.+.-.|..+++.+........ .+. .+... ++..++.+.. ++.|+-+|..+|+.+-.+.
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKFG 137 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeeec
Confidence 566677778888888888777765543322 000 11111 2245555543 6679999999999887766
Q ss_pred ccccc--ccceE-EEEEcCCCCEEEEEe---------CCCeEEEEECCCCeeEEEEeCCCCC------------------
Q 001367 573 GLQLQ--HNSVS-VVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGL------------------ 622 (1091)
Q Consensus 573 ~~~~~--~~~v~-~v~~~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~------------------ 622 (1091)
..... ...+. +..+. +..++.++ .+|.++.+|..+|+.+-........
T Consensus 138 ~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 53300 00011 11121 24455553 3688999999999988777543110
Q ss_pred CCC-ceEEEccCCCEEEEEECCC
Q 001367 623 PEN-PRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 623 ~~v-~~v~~s~~~~~l~~~~~dg 644 (1091)
..+ ...++.+.+..+++++.++
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g 238 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNG 238 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCC
Confidence 001 1344555567777777665
|
The alignment model contains an 8-bladed beta-propeller. |
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.5e-06 Score=65.52 Aligned_cols=53 Identities=34% Similarity=0.595 Sum_probs=42.1
Q ss_pred hHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhhhhhhcCCCH
Q 001367 37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1091)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~ 90 (1091)
++..++++|+.|+|+.|++.++..........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 468899999999999999999876332222222 49999999999999988764
|
Alpha-helical motif of unknown function. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0011 Score=77.15 Aligned_cols=212 Identities=16% Similarity=0.138 Sum_probs=120.0
Q ss_pred CCeEEEEEcCCCCcEEEEEe------CCC--eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCC-CcEEEE-
Q 001367 843 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVW- 912 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~------~dg--~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D-g~i~vw- 912 (1091)
..+...+++| +|+.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|++.+.. ..+++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999 677666554 244 5555564 23332223332 37889999999988877543 222222
Q ss_pred ----------EcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEE---EEcCCcce-e---eeeecC
Q 001367 913 ----------DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTC-L---KQWFPI 975 (1091)
Q Consensus 913 ----------d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~v---wd~~~~~~-~---~~~~~~ 975 (1091)
+++.++.. + .....|..+.|||||+.+|...+++|++ -....|+. + ..+..+
T Consensus 426 ~~~~gql~~~~vd~ge~~-----~------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 426 DPATGQLARTPVDASAVA-----S------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred cCCCceEEEEeccCchhh-----h------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecc
Confidence 33332210 0 0113699999999999999976788877 45455541 1 111222
Q ss_pred CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEE
Q 001367 976 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1055 (1091)
Q Consensus 976 h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~ 1055 (1091)
-...+.++.|..++.++ ++..++...+|.+.-.-......+...+. ..+ ..++-.| ..+.++..+|.+.
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~-----~~v--~~vaa~~---~~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLS-----APV--VAVAASP---STVYVTDARAVLQ 563 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCcc-----Cce--EEEecCC---ceEEEEcCCceEE
Confidence 23446889999999855 55555555566544332221111111111 112 2345554 3566666666444
Q ss_pred EEecCCCCCCcccCCCCccccCCCC
Q 001367 1056 VIEPNEPGDTWAVLPPDEIVGDQPT 1080 (1091)
Q Consensus 1056 ~w~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1091)
+=.-...+..|.+.|.+....+.|.
T Consensus 564 l~~~~~~~~~W~ev~~l~g~~~~p~ 588 (591)
T PRK13616 564 LPNSDSGDQYWREVPGLMGPRAAPV 588 (591)
T ss_pred ecCCCCCCCCceECccccCCCcccc
Confidence 4333345578999998876665553
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00049 Score=77.50 Aligned_cols=186 Identities=12% Similarity=0.140 Sum_probs=123.6
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.+.+++++ ++.++.++.+|.+++++.+.+.. +. + .|... ..+|.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------~~-------~---~~s~~------~~~Ge 84 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------TN-------F---DHSSS------ILEGE 84 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCccc------------------cc-------c---ccccc------ccCCc
Confidence 34444443 56688888899999987543210 00 0 02111 55899
Q ss_pred EEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCC----CCcEEEEEeCCCeEEEEeccC-c-ceeeeeccccCC
Q 001367 815 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARS-S-EVISKLEGHSKR 887 (1091)
Q Consensus 815 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----~~~~la~g~~dg~i~iwd~~~-~-~~~~~l~~h~~~ 887 (1091)
++++++ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-.= | +....+..-.|+
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 999999 7999999998888776665 4568999999993 256788899888 77775321 1 111235556789
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcC
Q 001367 888 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 964 (1091)
Q Consensus 888 V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~ 964 (1091)
|.++.|. |+++|-++.+| |+|+|+.++.... .++.+............+.|.++.+ |+.|-..+|+|..++
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 9999995 88999998888 9999999865433 2222222222122345677776655 566777788888776
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.2e-06 Score=49.72 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhc
Q 001367 6 KDLVFLILQFLNEEGFTESAHMLERES 32 (1091)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~l~~Es 32 (1091)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999997
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0051 Score=71.20 Aligned_cols=244 Identities=11% Similarity=0.144 Sum_probs=136.9
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecCCCCC-----e-EEEEEcCCCCcEEEEEe---------CCCeEEEEeccCcce
Q 001367 813 DAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----A-TSLAFNPHDNNVIAIGM---------DDSTILIYNARSSEV 877 (1091)
Q Consensus 813 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~-----i-~~l~~s~~~~~~la~g~---------~dg~i~iwd~~~~~~ 877 (1091)
++.++...++.|..+|.++|+.+-++...... + ....+. ++ ++++++ .+|.+.-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 44444444899999999999999877643321 1 122332 23 444454 367899999999998
Q ss_pred eeeeccccC--------------------Ce-EEEEECCCCCEEEEEeCCC------------------cEEEEEcCCCc
Q 001367 878 ISKLEGHSK--------------------RV-TGLVFSDALNILVSSGGDA------------------QIFVWDVDGWG 918 (1091)
Q Consensus 878 ~~~l~~h~~--------------------~V-~~l~~spdg~~las~s~Dg------------------~i~vwd~~~~~ 918 (1091)
+........ .| ...++.+.+..++.++.++ .|.-.|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 766543211 01 1234455566777776655 68888998887
Q ss_pred eeeeeeeeccC-----CCcCCCCCceEEEEcCCCC---EEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCC
Q 001367 919 IQTCRSLQTPD-----GVMTLAPSETHIQFHKDQT---RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 989 (1091)
Q Consensus 919 ~~~~~~~~~~~-----~~~~~~~~i~~l~fs~dg~---~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg 989 (1091)
..=........ +... ..+..+. .-+|. .+++ +.+|.+...|.++|+.+...... ...++.+|
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~--p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~-- 338 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQ--PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP-- 338 (488)
T ss_pred EEEEeeCCCCCCcccccCCC--CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--
Confidence 43211111110 1000 0011111 12343 3444 46899999999999988764321 11233344
Q ss_pred CEEEEE------------------EcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecC
Q 001367 990 RMVFTS------------------FVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1051 (1091)
Q Consensus 990 ~~l~t~------------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~d 1051 (1091)
..++.+ ..+|.+.-.|+.+|+.+-+...........-+.......+.. .+..+++|+.|
T Consensus 339 ~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~d 415 (488)
T cd00216 339 GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAAD 415 (488)
T ss_pred ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCC
Confidence 223322 235788888999998775444220000000000011001112 25789999999
Q ss_pred CcEEEEecCCCCCCcccCCC
Q 001367 1052 GEVYVIEPNEPGDTWAVLPP 1071 (1091)
Q Consensus 1052 g~v~~w~~~~~~~~~~~~~~ 1071 (1091)
|.|+.+|..+++..|...-+
T Consensus 416 G~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 416 GYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred CeEEEEECCCCceeeEEECC
Confidence 99999999999999986543
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00064 Score=75.66 Aligned_cols=196 Identities=19% Similarity=0.141 Sum_probs=117.6
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCC---CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~d---g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
...+.+..-...+..-+|+|+++.+....-.. ..+.++++.+++.....+ -.+.-..
T Consensus 183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~~ 242 (425)
T COG0823 183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNGA 242 (425)
T ss_pred cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccCC
Confidence 34455555556888889999998755443322 359999999987665422 2233445
Q ss_pred EEECCCCCEEEEEE-CCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCc--EEEEeCCCCc
Q 001367 402 VVWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGS 476 (1091)
Q Consensus 402 l~~spdg~~las~~-~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~ 476 (1091)
.+|||||++||.+. .|+ .|.+.|+.++...+ +..-.+.-+.-.|+|||++ ++++.+..|. |.+.|++.+.
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCc
Confidence 68999999998874 444 57777888766222 3333333447789999996 3444555554 5666766555
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecC-Ce--EEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
. ..+......-. ....++||.+++..+.. |. |.+.|+.+...... ...........+.++++.+...+.
T Consensus 318 ~-~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~-lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 318 V-TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI-LTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred e-eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE-ccccccCCCCCcCCCCceEEEecc
Confidence 4 22222211111 22336788888777643 44 55666655553222 222223345578889988877654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00066 Score=75.52 Aligned_cols=175 Identities=15% Similarity=0.157 Sum_probs=110.5
Q ss_pred eEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe---CC-CeEEEEeccCcceeeeeccccCCeEEEEECCCCC
Q 001367 823 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DD-STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 898 (1091)
Q Consensus 823 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~---~d-g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 898 (1091)
.+.+-|.. +...+.+......+..-+|+| +++.++..+ .. ..++++++.+++....+. ..+.-...+|||||+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 34444544 555555555566777788999 666655442 22 469999999886543333 223344578999999
Q ss_pred EEEEE-eCCCc--EEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEec--C--eEEEEEcCCcceeee
Q 001367 899 ILVSS-GGDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T--HLAIYEAEELTCLKQ 971 (1091)
Q Consensus 899 ~las~-s~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d--~--~i~vwd~~~~~~~~~ 971 (1091)
.|+-+ ..||. |.+.|+.++... .+....+. -..-.|+|||++|+-.+| | .|.+++.+.+...+.
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi------~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGI------NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcce---ecccCCcc------ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 87754 45664 666677765411 12333332 236789999999998544 3 588888887766443
Q ss_pred eecCCccCEEEEEEeeCCCEEEEEEcC-Cc--EEEEeCCCCce
Q 001367 972 WFPISSVPISQATFSCDCRMVFTSFVD-GT--LSIHEASNLEV 1011 (1091)
Q Consensus 972 ~~~~h~~~v~~v~fs~dg~~l~t~~~d-g~--v~iwd~~~~~~ 1011 (1091)
...+ +.-....+||||++++..+.. |. |.+.++.++..
T Consensus 322 T~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 322 TFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred eccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 3322 222277899999999877743 44 77777777664
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.014 Score=66.61 Aligned_cols=251 Identities=15% Similarity=0.104 Sum_probs=136.7
Q ss_pred CcEEEEEcCCCceEEEEEcCCCc----EEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGD----TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~----i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.+...++||||++++.+-+..|. +++.|+.+|+.+.. . +.. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEE
Confidence 44467899999977666555554 99999999976643 1 111 112239999999888
Q ss_pred EEEECC-----------CEEEEEEeeCCcccceeEEEeccccC--eeEEEEcCCCCceEEEEeeC-C-CcEEEEeCCCC-
Q 001367 412 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGD-D-KTIKVWDAVTG- 475 (1091)
Q Consensus 412 as~~~d-----------~~i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~~~l~s~~~-d-~~i~iwd~~~~- 475 (1091)
+....+ ..|+.|.+.++..-. ...+.+.... ...+..++|++.+++.+.+. + ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 776433 246777776654321 1234443333 56888999999633323322 2 35788888764
Q ss_pred ---ceeEEecCCCcce-EEEeecccCCceEEEEE---ecCCeEEEEecCCCCc---eeeecCCCCcEEEEEEcCCCCEEE
Q 001367 476 ---SRTYSFEGHGAPV-YSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 476 ---~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
.....+......+ ..+... ++.+++.. ...+.|...++..... ...+..+...+.-..+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 2333333333333 333321 22333333 2335666677776653 223444444322233334556666
Q ss_pred EEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE--Ee--CCCeEEEEECCCCeeE
Q 001367 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLL 613 (1091)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~--~s--~dg~i~iwd~~~~~~~ 613 (1091)
.... .++...|+++++..+.......... .+.|..+...++++.+.. .| .-++++.||+.+++..
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5543 2457789999998444444444433 345666665666655543 23 3467888899888764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00071 Score=74.30 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=81.5
Q ss_pred CCeeEEEecC-CCCEEEEEe-----CCe----EEEEEccCceeEEE---ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 001367 802 EAVPCFALSK-NDAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 868 (1091)
Q Consensus 802 ~~v~~l~~s~-dg~~la~~~-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~ 868 (1091)
....++.||. +...+.+.. +|. -.+|+....+..+. --.....+.+++++| +...|+.|+.||+|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 3446667775 333343332 232 45677765543321 123667899999999 888999999999999
Q ss_pred EEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001367 869 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 918 (1091)
Q Consensus 869 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~ 918 (1091)
+||...+.. .+..+.-..+.++|+|+|..+++|+..|.+.+||+.-+.
T Consensus 285 LyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 285 LYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999877633 233344567889999999999999999999999997644
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.008 Score=66.33 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=81.2
Q ss_pred ceEEEEcC-CCCEEEEE-----ecC----eEEEEEcCCcc--eeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 938 ETHIQFHK-DQTRFLLV-----HET----HLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 938 i~~l~fs~-dg~~la~~-----~d~----~i~vwd~~~~~--~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
..++.||- +...+.+. .+| .-.+|+....+ ++..........|.+++++|+...++.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 46778876 33444331 233 25577776543 33333345688999999999999999999999999999
Q ss_pred CCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1006 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
...+..... ...+.|..++||| +|..+++|+..|.+.+||+--+.
T Consensus 288 ~~~~~t~~~------------ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 288 TTRGVTLLA------------KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCCeeeee------------eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 988744422 1124456799999 58999999999999999975443
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.9e-05 Score=52.67 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001367 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1091)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~ 35 (1091)
.++++.++|+|||...||.+||++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0051 Score=67.84 Aligned_cols=282 Identities=13% Similarity=0.150 Sum_probs=143.7
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.|..+.|+++...++++...|.+.+|.+..+........... .+.. -..+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~-----~~~~------------------~~~~~~~---- 55 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPD-----LDYN------------------FRRFSLN---- 55 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------------------------S--GG----
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcc-----cCcc------------------ccccccc----
Confidence 578899999988899999999999999876543210000000 0000 0000000
Q ss_pred EEEEEeCCeEEEEEcc---------CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee--ecc
Q 001367 815 YLFSASGGVISLYIVM---------TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG 883 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~---------~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~--l~~ 883 (1091)
++.-.+-|+. ...+...+....+.|++++.|. =| ++|+|..+|.+.|.|++....+.. +..
T Consensus 56 ------~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~-iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 56 ------NSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD-IG-FVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp ------GSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred ------CCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC-Cc-EEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 0001111111 1122333444578999999985 44 999999999999999987665533 222
Q ss_pred ------ccCCeEEEEECC-----CC---CEEEEEeCCCcEEEEEcCC-C-ceeeeeeeeccCCCcCCCCCceEEE-EcCC
Q 001367 884 ------HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG-W-GIQTCRSLQTPDGVMTLAPSETHIQ-FHKD 946 (1091)
Q Consensus 884 ------h~~~V~~l~~sp-----dg---~~las~s~Dg~i~vwd~~~-~-~~~~~~~~~~~~~~~~~~~~i~~l~-fs~d 946 (1091)
....|+++.|+. |+ -.|+.|...|.+.+|.+.. . ..-..........+.. .+..+. |+.+
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~---~i~~I~~i~~~ 204 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDS---PILSIIPINAD 204 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCC---ceEEEEEEECC
Confidence 334688888862 33 4678899999999998862 1 1111111111111211 344433 4322
Q ss_pred ---------------------CCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEe-----eCCCEEEEEEcCCc
Q 001367 947 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-----CDCRMVFTSFVDGT 1000 (1091)
Q Consensus 947 ---------------------g~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs-----~dg~~l~t~~~dg~ 1000 (1091)
..+++++++..++++...+.+...... ........+.+- ..+..|++-..+|.
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~ 283 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS 283 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence 125666889999999999888776655 222333445553 35677888899999
Q ss_pred EEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1001 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1001 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
|+++.++..+.+......... ....+. ..++++ +|..++-. ....+.++.+....
T Consensus 284 i~i~SLP~Lkei~~~~l~~~~----d~~~~~--~ssis~-~Gdi~~~~-gpsE~~l~sv~~~~ 338 (395)
T PF08596_consen 284 IRIYSLPSLKEIKSVSLPPPL----DSRRLS--SSSISR-NGDIFYWT-GPSEIQLFSVWGEG 338 (395)
T ss_dssp EEEEETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE--SSSEEEEEEEES--
T ss_pred EEEEECCCchHhhcccCCCcc----cccccc--ccEECC-CCCEEEEe-CcccEEEEEEEccC
Confidence 999999999988777632111 112222 234566 36655444 45566666664443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.006 Score=62.16 Aligned_cols=197 Identities=9% Similarity=0.090 Sum_probs=111.9
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+.|.+-.+++..++|.|+...|+|+....+.|...+. +|+.+.... +.+ -+..-.|++..+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~ 75 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN 75 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence 4566767789999999997779999999999988886 577765422 333 357888999988
Q ss_pred CCEEEEEECCCEEEEEEeeCCcc-c--ce--eEEEe---ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC---Cc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSD-A--RQ--QLEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS 476 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~-~--~~--~~~~~---~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~ 476 (1091)
+.++++.-.++.+.+.++..... + .. ...+. .+...+-.++|.+.++. |+.+-...-..++.+.. +.
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence 88888776789999999844321 1 11 11111 23456899999999884 44445555555555442 21
Q ss_pred eeEE--------ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC---------CcEEEEEEcC
Q 001367 477 RTYS--------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA 539 (1091)
Q Consensus 477 ~~~~--------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~ 539 (1091)
.+.. .......+.++++++. .+++++....+..|.++| ..++....+.... ...-.++|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 1111 1123345778888765 567888888889999998 4444433332222 2467899999
Q ss_pred CCCEEEEE
Q 001367 540 NGRRLFSC 547 (1091)
Q Consensus 540 d~~~l~~~ 547 (1091)
+|+..++.
T Consensus 232 ~G~LYIvs 239 (248)
T PF06977_consen 232 DGNLYIVS 239 (248)
T ss_dssp T--EEEEE
T ss_pred CCCEEEEc
Confidence 99766664
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0037 Score=68.93 Aligned_cols=255 Identities=14% Similarity=0.139 Sum_probs=133.8
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCcee------e------------eceeEEecccccc------ceeeee
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------I------------RNFKVWDIGACSM------LFKTAL 391 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~------~------------~~~~~~~~~~~~~------~~~~~~ 391 (1091)
.|+++.|+++..- ||+|...|.|.||.+...+.-. . ..-.+-|+..... ..+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999653 5888999999999875433221 0 0123445443222 234445
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEec------cccCeeEEEEc---C--CC-CceEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFS---A--PC-KQISVI 459 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s---~--d~-~~~~l~ 459 (1091)
+....++|++++.| |=.++|.|..+|.+.|.|++....+.. ..+.. ....|+++.|+ . |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 667999999999999999976654332 12222 23468888886 2 22 224788
Q ss_pred EeeCCCcEEEEeCC--C-Ccee----EEecCCCcceEEEeecccCCc-------------------eEEEEEecCCeEEE
Q 001367 460 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA 513 (1091)
Q Consensus 460 s~~~d~~i~iwd~~--~-~~~~----~~~~~~~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~i 513 (1091)
.|...|.+.+|.+. . +... .....+.++|..+.......| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 2211 112246677766653211111 23455556788999
Q ss_pred EecCCCCceeeecCCCCcEEEEEEc-----CCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc-ccccceEEEEEc
Q 001367 514 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFD 587 (1091)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s-----~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~v~~~ 587 (1091)
+...+.+..............+++- ..+..|++... ++.++++.+..-+.+....-.. .....+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888777666555332334444553 24555555554 6679999998877776665532 011233445566
Q ss_pred CCCCEEEEEe
Q 001367 588 TAKDQILAAG 597 (1091)
Q Consensus 588 ~~~~~l~~~s 597 (1091)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 6666554443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0059 Score=65.07 Aligned_cols=229 Identities=12% Similarity=0.049 Sum_probs=110.6
Q ss_pred EEECCCCCEEEEEEC-C--CEEEEEEeeCCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 402 VVWSPDGSLLGVAYS-K--HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 402 l~~spdg~~las~~~-d--~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
=+|.+||++|+.++. | ..+.+-|+.+++..+ |.... .......++|+++ .++-......|+-.|+++.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 367889988877664 4 467888888876433 33332 2233567788888 455454556888899999877
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEec----------------------CCeEEEEecCCCCceeeecCCCCcEEEE
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1091)
...+......+-...+..+.++..++..-. ...|..-|+.+++....+. ....+.-+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 655655666665566655556655544321 1234444556544433333 44467788
Q ss_pred EEcCCCC-EEEEEecCCCCce-EEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEe-----CCCeEEEEEC
Q 001367 536 AYSANGR-RLFSCGTSKEGES-FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWDM 607 (1091)
Q Consensus 536 ~~s~d~~-~l~~~~~~~~~~~-~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-----~dg~i~iwd~ 607 (1091)
.|+|... .|+.|.. +..+. .-+||-+.+ +...+.+..+. ....+.-=.|.|||..+.--+ .+..|.-+|.
T Consensus 194 ~fsP~dp~li~fCHE-Gpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHE-GPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEETTEEEEEEEEE--S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred ccCCCCCCEEEEecc-CCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 8999554 4555543 22222 124454432 22233333222 123445557899998776522 3556777889
Q ss_pred CCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC
Q 001367 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1091)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1091)
.+++........ .......++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 888665433322 23556677899877654443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.11 Score=60.30 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=42.9
Q ss_pred CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccc
Q 001367 822 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 884 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 884 (1091)
|.|.-+|+.+++..-............... .+.+++.++.||.++.+|..+|+.+...+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 568889999998887765433222222222 3347777888999999999999998777643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.012 Score=58.47 Aligned_cols=256 Identities=17% Similarity=0.168 Sum_probs=144.3
Q ss_pred ceEEEEEcCCCCEE-EEEeCCCe-EEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC-----CeEEEEECC
Q 001367 580 SVSVVHFDTAKDQI-LAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETP 652 (1091)
Q Consensus 580 ~v~~v~~~~~~~~l-~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~ 652 (1091)
.-..++|+|....- +.+-.-|+ ..++|....+...++......-.--.=+|||||.+|+..-+| |.|-|||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34557788876543 44555555 578999988877776554332222345799999999876543 678888876
Q ss_pred CC-CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCcc
Q 001367 653 ES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 731 (1091)
Q Consensus 653 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 731 (1091)
.+ ..+.++..
T Consensus 149 ~~fqrvgE~~t--------------------------------------------------------------------- 159 (366)
T COG3490 149 EGFQRVGEFST--------------------------------------------------------------------- 159 (366)
T ss_pred cccceeccccc---------------------------------------------------------------------
Confidence 43 11111111
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEe-ecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEec
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 810 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 810 (1091)
|.-.-..+.+.+||+.++.+. |-|... ++...+.+.+.- .-.+.+.+..+|..+.+..++..-+...+..++.-
T Consensus 160 ~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsM---ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g 234 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSM---EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG 234 (366)
T ss_pred CCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhc---CccEEEEeccccchhhhccCchhhhhcceeeeeeC
Confidence 222334567777887665543 333333 222222211111 11233455567776666666644467788999999
Q ss_pred CCCCEEEEEe-CC----e-EEEEEccCceeEEEecCC-------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce
Q 001367 811 KNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 877 (1091)
Q Consensus 811 ~dg~~la~~~-dg----~-i~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~ 877 (1091)
+||..++.+. .| . -.+=-...++.+.-+..+ ...|-+++.+.+++-..++.-..+...+||..+|..
T Consensus 235 ~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 235 RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 9998887764 11 1 111112234444433322 245778888875555555555666889999999987
Q ss_pred eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 878 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
+..-.- .....++- .+.-++..+.+|.+.++.
T Consensus 315 v~~a~l--~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 315 VSEAAL--PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred Eecccc--ccccccee--ccCceEEecCCceEEecc
Confidence 643221 11222322 333355566778787763
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0035 Score=70.03 Aligned_cols=220 Identities=14% Similarity=0.151 Sum_probs=114.3
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
....+.++|+|+.+++ ..+|...++.-.... - ...+....++|+++++
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r-----------------------~--------k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR-----------------------N--------KAFGSGLSFVWSSRNR 81 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTE-----------------------E--------EEEEE-SEEEE-TSSE
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCc-----------------------c--------cccCceeEEEEecCcc
Confidence 4568999999997777 667777776521100 0 0223456788888777
Q ss_pred EEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEEC
Q 001367 815 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 894 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 894 (1091)
+.+.-..++|.|+.--+.+....+..+ ..+..+-. |.+|...+.+ .|.+||+.+++.+.++... +|..+.||
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 555555788999743333333344322 23333332 6677766644 8999999999999998743 38999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCC---------ceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCC
Q 001367 895 DALNILVSSGGDAQIFVWDVDGW---------GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 965 (1091)
Q Consensus 895 pdg~~las~s~Dg~i~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~ 965 (1091)
++|.++|-.+.+ .+.|++.+.. .......+.... ..|.+.+|..| .++-...+.++-+ -.
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~------~~IkSg~W~~d--~fiYtT~~~lkYl--~~ 222 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS------ERIKSGCWVED--CFIYTTSNHLKYL--VN 222 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEETT--EEEEE-TTEEEEE--ET
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec------ceeEEEEEEcC--EEEEEcCCeEEEE--Ec
Confidence 999999988866 4888776543 000011121111 25778888777 3333333365552 23
Q ss_pred cce--eeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 966 LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 966 ~~~--~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
|+. +..+ ..++.=+.+.+....+.....|+.|..+.++..
T Consensus 223 Ge~~~i~~l----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 223 GETGIIAHL----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp TEEEEEEE-----SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred CCcceEEEc----CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 332 2221 345566677776677777778888888776643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.02 Score=64.32 Aligned_cols=199 Identities=17% Similarity=0.163 Sum_probs=110.5
Q ss_pred EEEecCCCCEEEEEeCC------------eEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEecc
Q 001367 806 CFALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 873 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~ 873 (1091)
.++.+|.|..+|...+. .|+||+.. |+.+.++.-..+.+.++.|+. +.. |++...||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCC
Confidence 45667777777776544 58889854 666666554448999999997 554 4557789999999986
Q ss_pred Ccce-------eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeee-eccCCCc--CCCCCceE-EE
Q 001367 874 SSEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL-QTPDGVM--TLAPSETH-IQ 942 (1091)
Q Consensus 874 ~~~~-------~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~--~~~~~i~~-l~ 942 (1091)
|+. +....-....+....+..+|-.+. ..++.+.+-+--..... .+.+ ..+.... ........ ..
T Consensus 110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVK-LRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred -CceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccch-hhccccCCCcccccccccccccceE
Confidence 333 111111222233334444553333 34444433322111100 0111 1111100 00001111 34
Q ss_pred EcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 943 FHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 943 fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
++.+....+. ..++.+.+.+....+. . ...+++..++.||+|++||.-..+|.+.+....-.+..+.+.
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 5555554444 4555666555332211 1 124689999999999999999999999998877666666555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.011 Score=65.83 Aligned_cols=207 Identities=13% Similarity=0.154 Sum_probs=144.2
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEeccCcce
Q 001367 803 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEV 877 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~---dg~i~iwd~~~~~~ 877 (1091)
....+++++++..+.... ++.|.+.|..+.+......... ....++++| +++.+.++.. ++++.+.|..+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 445788899988666555 5899999988777776654322 667899999 5555554443 68999999999888
Q ss_pred eeeeccccCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--e
Q 001367 878 ISKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 954 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~spdg~~las~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~ 954 (1091)
+.....-..+ ..++++|+|+.+..+ ..++.|.+.|..+..... ...............+.++|+|.++.+. .
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEecc
Confidence 7775443344 889999999966554 478999999987744221 1100001111245689999999977763 2
Q ss_pred c--CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-CcEEEEeCCCCceEEEee
Q 001367 955 E--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 955 d--~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-g~v~iwd~~~~~~~~~~~ 1016 (1091)
+ +.+...|..++................+.++|+|+++.+.... +.|.+-|..+......+.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 2 5899999988877665222211145678999999998877444 889999999887776554
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.035 Score=63.40 Aligned_cols=248 Identities=13% Similarity=0.121 Sum_probs=129.2
Q ss_pred ccEEEEEECCCCCEEEEE-ECC----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEe-eC-------
Q 001367 397 VSVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GD------- 463 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~-~~------- 463 (1091)
..+..+++||||+++|.+ +.. ..++++|+.+|+.+.. .+... ....+.|.+|++. ++.+. ..
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccC
Confidence 345578999999999976 333 3699999999865432 12211 1223999999985 33333 22
Q ss_pred --CCcEEEEeCCCCcee--EEecCCCcce--EEEeecccCCceEEEEEecC----CeEEEEecCCC----CceeeecCCC
Q 001367 464 --DKTIKVWDAVTGSRT--YSFEGHGAPV--YSLCPHAKENIHFIFSISVD----GKIKAWLYDSL----GARVDYDAPG 529 (1091)
Q Consensus 464 --d~~i~iwd~~~~~~~--~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~----~~~~~~~~~~ 529 (1091)
...|+.|.+.++..- ..+....... ..+.. +.++++++..+.. ..+.+.++... .....+....
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 234888888776433 4444444443 34444 5677776654333 23666677654 2223333222
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee---eEEEecccccccceEEEEEcCCCCEEEE-EeCCC--eEE
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH--VIK 603 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg--~i~ 603 (1091)
..+....-.. +..+...+..+...+.|...++..... ...+..+. ....+..+.. .+++|+. ...++ .|+
T Consensus 277 ~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 277 DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 2332222222 444444443444567788888877652 22333333 0113444443 4555555 33443 588
Q ss_pred EEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC----CCeEEEEECCCCCe
Q 001367 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 656 (1091)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~~ 656 (1091)
++++..+.....+..... ..|..+...+++..+..... -++++.||+.+++.
T Consensus 353 v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 899984555555554432 23455555555554443322 36788888887754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0057 Score=68.42 Aligned_cols=223 Identities=9% Similarity=0.044 Sum_probs=116.0
Q ss_pred CCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1091)
.....+..+.++|+|++++++ .+|.-.|+.... .+. ...+.-...+|.+.++ +++-...+.|.|+.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~---~r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA---WRN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT---TEE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC---Ccc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 345567899999999999995 567677777322 121 1234456789998665 5666668889996423
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
+.+....+... ..+..+.. |.+|...+ ++.|.+||+++.+.+..+... +|..+.|+++|++++..+.+
T Consensus 98 ~~~~~k~i~~~-~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~--- 165 (443)
T PF04053_consen 98 KNEVVKSIKLP-FSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD--- 165 (443)
T ss_dssp EE-TT-----S-S-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S----
T ss_pred ccccceEEcCC-cccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC---
Confidence 33333333221 22333322 44555554 448999999999888887754 38899999999999988742
Q ss_pred ceEEEEEecCCc-----------eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC
Q 001367 554 ESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622 (1091)
Q Consensus 554 ~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1091)
.+++++.... .....+.... ..|.+.+|..+ .++-.+.. .++- +-.|+........
T Consensus 166 --~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld--- 232 (443)
T PF04053_consen 166 --SIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD--- 232 (443)
T ss_dssp --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S---
T ss_pred --eEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC---
Confidence 3666554332 0122222112 46788888765 44444444 5655 3334332222222
Q ss_pred CCCceEEEccCCCEEEEEECCCeEEEEECCC
Q 001367 623 PENPRICFNKNGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
..+.-+.+.+..+.+.....++.+..+.+..
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 1356777788778888888888888887763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0031 Score=70.37 Aligned_cols=119 Identities=11% Similarity=0.070 Sum_probs=87.6
Q ss_pred CceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccccccc-ceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
+.--+++..+++++.|+.-|.+++|+...+.....-.+-... +....+ +++..+++.|
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v---------------------s~~e~lvAag 94 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV---------------------SSVEYLVAAG 94 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe---------------------cchhHhhhhh
Confidence 444567778999999999999999998877544332222222 222333 6777788888
Q ss_pred ccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCC
Q 001367 704 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 764 (1091)
Q Consensus 704 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~ 764 (1091)
+..|.|-++.++...+.....+.-....|...|+++.|++++..+++|...|.|.+-.++.
T Consensus 95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 8888888888776555554444444455889999999999999999999999998877654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0035 Score=73.06 Aligned_cols=184 Identities=9% Similarity=0.071 Sum_probs=104.1
Q ss_pred CCeeEEEecCCCCEEEEEe-------CC--eEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC--------
Q 001367 802 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 864 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-------- 864 (1091)
..+...++||||+.+|... +. .+.+++.. +.. +.+.. ....+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999988764 33 45555542 222 33322 22478899999 77766665422
Q ss_pred ----CeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeeccCCCcCCCCC
Q 001367 865 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 937 (1091)
Q Consensus 865 ----g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1091)
+.+.+.++..++... ...+.|..+.|||||+.+|... ++.|.+ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234444554443322 2346799999999999988766 577777 444444422111111212111 13
Q ss_pred ceEEEEcCCCCEEEEEecCeEEEEEcCC-cceeeeeecC--CccCEEEEEEeeCCCEEEEEEcCC
Q 001367 938 ETHIQFHKDQTRFLLVHETHLAIYEAEE-LTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDG 999 (1091)
Q Consensus 938 i~~l~fs~dg~~la~~~d~~i~vwd~~~-~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~dg 999 (1091)
+.++.|..++.+++...++...+|.+.- |..... ..+ ...++.+|+-+++ .++....+|
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 5789999999976554444344454331 222111 122 2566777777763 344455666
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.024 Score=57.87 Aligned_cols=201 Identities=11% Similarity=0.079 Sum_probs=110.6
Q ss_pred CCCCeeEEEecCCCCEEEEEeC--CeEEEEEccCceeEEEecCC-CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc
Q 001367 800 SQEAVPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 876 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~d--g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~ 876 (1091)
-...+..+++.|+...|++..| +.|..++. +|+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 4556999999998776666653 77877776 57888776543 35788899987 77777766668999999984321
Q ss_pred ------eeeee-----ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC---CceeeeeeeeccCCCcCCCCCceEEE
Q 001367 877 ------VISKL-----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQ 942 (1091)
Q Consensus 877 ------~~~~l-----~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~ 942 (1091)
....+ ..++..+-.++|.|.++.|+.+-+..-..++.+.. .....................+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 11111 12455689999999888888787776677777654 11111111111110111112478999
Q ss_pred EcCCCCEEEE-E-ecCeEEEEEcCCcceeeeee--cCC------ccCEEEEEEeeCCCEEEEEEcCCcEEEE
Q 001367 943 FHKDQTRFLL-V-HETHLAIYEAEELTCLKQWF--PIS------SVPISQATFSCDCRMVFTSFVDGTLSIH 1004 (1091)
Q Consensus 943 fs~dg~~la~-~-~d~~i~vwd~~~~~~~~~~~--~~h------~~~v~~v~fs~dg~~l~t~~~dg~v~iw 1004 (1091)
|.|....|.+ + .+..|..+| .+|+.+..+. .+. -...-.|+|.++|++.++ ++-...+++
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 9998665555 4 446788888 5566554322 211 135678999999976664 466555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.2 Score=56.02 Aligned_cols=251 Identities=13% Similarity=0.119 Sum_probs=160.3
Q ss_pred cEEEEEECCCCCEEEEEECC-CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 398 SVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
....++..|++..+...... ..+..-+... ..... ....-...-..++.++++.+ ..++...++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccc-ceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 55667888888655554322 2344444431 11111 11111123456788888886 45555567899999988777
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEec---CCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.......-. ....+++++ ++..+..+.. ++++.+.|-.+............+ ..++++|+|+.++... ..
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN---SD 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe---cC
Confidence 776653222 445566644 4545544443 688888888877777664443344 8899999999888775 23
Q ss_pred ceEEEEEecCCceeeEEEecc--cccccceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeEEEEeCCCCCCCCceE
Q 001367 554 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1091)
++.|.+.|..+....+ -... .........+.++|+++.+++.... +.+...|..++............ ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 7789999977666553 1100 1112345678899999988775433 69999999998877763222222 34678
Q ss_pred EEccCCCEEEEEECC-CeEEEEECCCCCeecccc
Q 001367 629 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG 661 (1091)
Q Consensus 629 ~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~ 661 (1091)
..+|+|+.+.+.... +.+.+.|..+........
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 999999999888554 889999888776655443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=4.2e-05 Score=83.33 Aligned_cols=204 Identities=12% Similarity=0.166 Sum_probs=128.5
Q ss_pred CCCcEEEEEcCCCc-eEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CCCEE
Q 001367 334 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1091)
Q Consensus 334 ~~~V~~v~fspdg~-~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 411 (1091)
...+.|++++-+.+ -++++|..+|.|.+-.+....-- ...+..+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 34788888765443 58899999999999887543221 0112556888999999999 77888
Q ss_pred EEEE----CCCEEEEEEeeCCcc-cceeEEEec-cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-eeEEecCC
Q 001367 412 GVAY----SKHIVQLYAYHGGSD-ARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGH 484 (1091)
Q Consensus 412 as~~----~d~~i~iwd~~~~~~-~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~ 484 (1091)
|+|- .|..+.|||+.++-. .+....+.+ -.....+++|-.+.+ ++.+|.....+.++|++... ....+ .
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--n 194 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--N 194 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--h
Confidence 8873 456799999998621 111111222 334566889988777 78888888899999987321 11111 2
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEe-cCCCCcee-eecCC----CCcEEEEEEcCCCC-EEEEEecCCCCceEE
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARV-DYDAP----GLGCTRMAYSANGR-RLFSCGTSKEGESFL 557 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~-~~~~~----~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i 557 (1091)
+..+..+.+.|- .+.++++-. ||.|.+|| ...-+... .+... ...+..++|.|-.. .++++.. ..++|
T Consensus 195 Tk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tI 269 (783)
T KOG1008|consen 195 TKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITI 269 (783)
T ss_pred hhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceE
Confidence 233444555442 223565555 99999999 33333222 11111 22488899999554 3444443 26679
Q ss_pred EEEecC
Q 001367 558 VEWNES 563 (1091)
Q Consensus 558 ~iwd~~ 563 (1091)
+++|+.
T Consensus 270 rlydi~ 275 (783)
T KOG1008|consen 270 RLYDIC 275 (783)
T ss_pred EEeccc
Confidence 999875
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.071 Score=56.89 Aligned_cols=231 Identities=11% Similarity=0.125 Sum_probs=130.4
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe----
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---- 481 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---- 481 (1091)
..++.|+.|..+| +.++++........ + .+..+|..+...++-+ .++.-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3678999999999 99999933322221 1 2333499999999877 444444 599999998754433211
Q ss_pred ----------cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC-----CceeeecCCCCcEEEEEEcCCCCEEEE
Q 001367 482 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS 546 (1091)
Q Consensus 482 ----------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~s~d~~~l~~ 546 (1091)
......+...+......+...+.......|.+|.+... ....++... ..+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 11222344443112233344555555668888887663 222333333 567788887 556666
Q ss_pred EecCCCCceEEEEEecCCceeeEEEecccc---------cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEE--E
Q 001367 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T 615 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~ 615 (1091)
+.. ....+.|+.++.....+..... ...++..+.. +++.+|++- +..-.+.|. .|+..+ .
T Consensus 154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 653 2378889887766544432210 0123333333 345555543 222333343 444333 3
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccc
Q 001367 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
+.... ....+++. ..+++.... +.|.||++.+++.++.+..
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 33222 23455553 457776665 5699999999988877664
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.085 Score=59.25 Aligned_cols=187 Identities=12% Similarity=0.124 Sum_probs=102.5
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEccCce------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
+.+.++.|+.+.++++...+|.+++||+.... .+.........+....+.. +| ++.-..++.+.+.+-...
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~-~G--ivvLt~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK-NG--IVVLTGNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC-CC--EEEECCCCeEEEEeCccc
Confidence 78999999999999999999999999986333 1111111112222333433 45 333344555554432221
Q ss_pred c-eeee---ecc-----ccC-CeEE-EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEc
Q 001367 876 E-VISK---LEG-----HSK-RVTG-LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 944 (1091)
Q Consensus 876 ~-~~~~---l~~-----h~~-~V~~-l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs 944 (1091)
. .... +.+ |.- .... ..++.+....+....++.+.+-+-.... .... .+++..+++|
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~--------~i~~----~~~i~~iavS 225 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK--------QIDS----DGPIIKIAVS 225 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc--------cccC----CCCeEEEEEC
Confidence 1 1111 111 100 0111 2344455555555555555533322210 0111 1368999999
Q ss_pred CCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 945 KDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 945 ~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
|+|+++|. ..+|.+.+....-.+....+..+-......+.|.-++..++.- ...|.+..
T Consensus 226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 99999998 6778999988766666665544434566778887765544433 33455544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.035 Score=55.26 Aligned_cols=231 Identities=16% Similarity=0.082 Sum_probs=134.0
Q ss_pred EEEecCCCCE-EEEEe-CCe-EEEEEccCceeEEEecCCCCC--eEEEEEcCCCCcEEEEEeCC-----CeEEEEeccCc
Q 001367 806 CFALSKNDAY-LFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS 875 (1091)
Q Consensus 806 ~l~~s~dg~~-la~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~la~g~~d-----g~i~iwd~~~~ 875 (1091)
.++++|--.. ++.+- -|+ ..++|..+.+...++....+. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 5677775443 34444 244 788999888777665433321 22346999 89888865433 68999999865
Q ss_pred -ceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEE--------------------EEcCCCceeeeeeeeccCCCcCC
Q 001367 876 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV--------------------WDVDGWGIQTCRSLQTPDGVMTL 934 (1091)
Q Consensus 876 -~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~v--------------------wd~~~~~~~~~~~~~~~~~~~~~ 934 (1091)
+.+..+..|.-.-..+.+.+||+.|+.+. |-|.. .|-.++.......+.....+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~--- 225 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ--- 225 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence 45678888887788899999999998764 32333 33223222211111111111
Q ss_pred CCCceEEEEcCCCCEEEEE-ecC-----eEEEEEcCCcceeeeeecC------CccCEEEEEEeeCCCEEEEEE-cCCcE
Q 001367 935 APSETHIQFHKDQTRFLLV-HET-----HLAIYEAEELTCLKQWFPI------SSVPISQATFSCDCRMVFTSF-VDGTL 1001 (1091)
Q Consensus 935 ~~~i~~l~fs~dg~~la~~-~d~-----~i~vwd~~~~~~~~~~~~~------h~~~v~~v~fs~dg~~l~t~~-~dg~v 1001 (1091)
..+..++..+||+.++.+ ..| --.|=-...++.+.-+-.. -...|-+|+...+..+++..+ .-+..
T Consensus 226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 247888888888877763 111 1111111222222211111 145677788776655555444 45568
Q ss_pred EEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEe
Q 001367 1002 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1058 (1091)
Q Consensus 1002 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~ 1058 (1091)
.+||..+|..+... .++.. ..| +- ...-+++.+.+|.+.+++
T Consensus 305 vi~da~tG~vv~~a----~l~da---aGv-----a~---~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 305 VIWDAATGAVVSEA----ALPDA---AGV-----AA---AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEcCCCcEEecc----ccccc---ccc-----ee---ccCceEEecCCceEEecc
Confidence 89999999987332 22222 111 11 134577777889988874
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.4 Score=55.86 Aligned_cols=197 Identities=11% Similarity=0.087 Sum_probs=119.6
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCC-cceEE----------EeecccCCceEEEEEecCCeEEEEecCCCCceeee
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYS----------LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1091)
.++.++.++.|.-.|..+|+.+.++.... ..+.. +++ .+..++.++.|+.+.-.|..+++.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 46667778889999999999988765321 11111 111 1236777888999999999998887765
Q ss_pred cCCCCc-EEEEEEcC---CCCEEEEEecCC--CCceEEEEEecCCceeeEEEeccccc----------------------
Q 001367 526 DAPGLG-CTRMAYSA---NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ---------------------- 577 (1091)
Q Consensus 526 ~~~~~~-i~~~~~s~---d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~---------------------- 577 (1091)
...... -..+.-+| ++ .++++.... ..++.|.-+|..+|+.+-.+......
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 432111 00111112 34 444443211 12577999999999887665432210
Q ss_pred ------ccce-EEEEEcCCCCEEEEEeCC-----C-----------eEEEEECCCCeeEEEEeCCCCC-------CCCce
Q 001367 578 ------HNSV-SVVHFDTAKDQILAAGDD-----H-----------VIKIWDMNKVQLLTTIDAGGGL-------PENPR 627 (1091)
Q Consensus 578 ------~~~v-~~v~~~~~~~~l~~~s~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~-------~~v~~ 627 (1091)
...+ ..+++.|+...++.+..+ + .|.-.|+++|+..-.++...+. ....-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 0111 134667777777775522 2 5677789999988777653221 11112
Q ss_pred EEEccCCC---EEEEEECCCeEEEEECCCCCeec
Q 001367 628 ICFNKNGT---LLAVIANENRIKILETPESNSVD 658 (1091)
Q Consensus 628 v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~ 658 (1091)
+.+..+|+ .++.+..+|.+++.|..+++.+.
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 22334665 78899999999999999997764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.048 Score=57.86 Aligned_cols=222 Identities=15% Similarity=0.082 Sum_probs=135.5
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCE
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1091)
-.|.|++..|+.+--..+.|.-|+..+|+... +. +.+.+.++..-.++..|+++. .+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~g- 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-HG- 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-cc-
Confidence 35778888788888888999999998775442 11 233445555555555666553 33
Q ss_pred EEEEEeeCCcccceeEEEe-cc-ccCeeEEEEcCCCCceEEEEeeCC------------CcEEEEeCCCCceeEEecCCC
Q 001367 420 VQLYAYHGGSDARQQLEID-AH-VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~-~h-~~~v~~~~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
+.+++.+++.......... +. ....+.+...|+|. +.+ +... |.|+..|. .+..++.+..+-
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~ 162 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL 162 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE
Confidence 6777776655422221211 11 23567888999998 333 3222 33444443 566666666666
Q ss_pred cceEEEeecccCCceEE-EEEecCCeEEEEecCC-----CCc--eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 486 APVYSLCPHAKENIHFI-FSISVDGKIKAWLYDS-----LGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~-----~~~--~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
..-+.++|+| |++.+ ++-+..+.|.-|+++. ... ........+..-.++...+|.+.+++... .+.|
T Consensus 163 ~~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v 237 (307)
T COG3386 163 TIPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV 237 (307)
T ss_pred EecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence 6678899965 55444 4445558888887763 111 12233334556677888888877644321 2369
Q ss_pred EEEecCCceeeEEEecccccccceEEEEEc-CCCCEEEEEe
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 597 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~s 597 (1091)
..|+.. |+++..+.... ..+.+++|. |+.+.|++.+
T Consensus 238 ~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEe
Confidence 999988 88888888765 567777774 5556666544
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0011 Score=69.06 Aligned_cols=100 Identities=15% Similarity=0.277 Sum_probs=84.2
Q ss_pred HHHHHHHHhhhhcChhHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhhh
Q 001367 7 DLVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFE 75 (1091)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~l~~Es~~~~----------~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~ 75 (1091)
.|..+|..++...|..+.+..|-+|+|... ++.++.++|..|+-.-|++.+..- ..+.+. ...+.|.
T Consensus 118 ~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~~ 195 (394)
T KOG2817|consen 118 VLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHHH
Confidence 358899999999999999999999999864 278899999999999999998653 222222 2238899
Q ss_pred hhhhhhhhhhcCCCHH--HHHHHHHhhccccCCCC
Q 001367 76 IRKQNFFEALDGHDIA--KALNILKKDLKDFAPGN 108 (1091)
Q Consensus 76 i~~q~~lEll~~~~~~--~a~~~l~~~l~~~~~~~ 108 (1091)
+.+++|++++..|... +|+...|++++|+....
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~ 230 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH 230 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch
Confidence 9999999999999988 99999999999996554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.15 Score=54.44 Aligned_cols=229 Identities=15% Similarity=0.065 Sum_probs=127.7
Q ss_pred CCceEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEE
Q 001367 345 VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 423 (1091)
Q Consensus 345 dg~~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iw 423 (1091)
.++ .|+.|+.+| +.+++... ...... .+...|..+...|+-+.|++-+ |+.++++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence 344 457888888 89999832 222211 1334599999999888887775 4899999
Q ss_pred EeeCCcccceeE-----------EEeccccCeeEEE--EcCCCCceEEEEeeCCCcEEEEeCCCC-----ceeEEecCCC
Q 001367 424 AYHGGSDARQQL-----------EIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG 485 (1091)
Q Consensus 424 d~~~~~~~~~~~-----------~~~~h~~~v~~~~--~s~d~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~ 485 (1091)
++..-....... ........+...+ -...+.. .++.+- ...|.+|.+... +..+++. -.
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE-cC
Confidence 987644322100 0011223344444 1123332 444443 458888877653 3445554 34
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC-----------cEEEEEEcCCCCEEEEEecCCCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-----------GCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
..+.+++|. +..++.|..+ ...+.|++++........... ....+.--+++.+|++..
T Consensus 139 ~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~------ 207 (275)
T PF00780_consen 139 DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD------ 207 (275)
T ss_pred CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec------
Confidence 677888885 2356666644 467788886555443322111 112222334456665432
Q ss_pred eEEEEEecCCceeeE--EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001367 555 SFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1091)
..-...| ..|+..+ .+.- . ..+..+++. ..++++.+. +.|.||++.++++++.+...
T Consensus 208 ~~g~fv~-~~G~~~r~~~i~W-~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVN-KNGEPSRKSTIQW-S---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEc-CCCCcCcccEEEc-C---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 1222233 3444333 2221 1 344555553 367777666 45999999999999998754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.099 Score=55.55 Aligned_cols=215 Identities=11% Similarity=0.044 Sum_probs=125.3
Q ss_pred EEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec
Q 001367 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1091)
Q Consensus 447 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1091)
..|.++... ++.+--..+.|.-||..+++.. .+. +...+.++... +.. ..|+++.. -+.+++.++......+.
T Consensus 30 P~w~~~~~~-L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~-d~~-g~Lv~~~~--g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 30 PVWDPDRGA-LLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALI-DAG-GRLIACEH--GVRLLDPDTGGKITLLA 102 (307)
T ss_pred ccCcCCCCE-EEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceee-cCC-CeEEEEcc--ccEEEeccCCceeEEec
Confidence 356677664 4455556778888987766432 232 22222333221 222 34444432 23445555444422221
Q ss_pred C-----CCCcEEEEEEcCCCCEEEEEec-----CC--CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEE
Q 001367 527 A-----PGLGCTRMAYSANGRRLFSCGT-----SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1091)
Q Consensus 527 ~-----~~~~i~~~~~s~d~~~l~~~~~-----~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 594 (1091)
. .....+.....|+|.+.+.... .. ...+.++.+|. .+..++.+..+- ..-+.++||||++.++
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~---~~~NGla~SpDg~tly 178 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL---TIPNGLAFSPDGKTLY 178 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE---EecCceEECCCCCEEE
Confidence 1 1124567788899988776544 11 12345666665 455666665533 4567899999998888
Q ss_pred EEeC-CCeEEEEECCC--Cee---EEEEeCCCCCCCCceEEEccCCCEEEEEECCC-eEEEEECCCCCeecccccccccc
Q 001367 595 AAGD-DHVIKIWDMNK--VQL---LTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNL 667 (1091)
Q Consensus 595 ~~s~-dg~i~iwd~~~--~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v 667 (1091)
.+.. .+.|.-|++.. +.. .............-.++...+|.+.+++..+| .|.+|+.. ++.+..+..+...+
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~ 257 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRP 257 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCC
Confidence 8654 47788887752 211 11111111122345678888888876555554 89999988 88888888777778
Q ss_pred eeeeec
Q 001367 668 RKLSVN 673 (1091)
Q Consensus 668 ~~~~~~ 673 (1091)
++++|.
T Consensus 258 t~~~Fg 263 (307)
T COG3386 258 TNPAFG 263 (307)
T ss_pred ccceEe
Confidence 888875
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.18 Score=52.49 Aligned_cols=206 Identities=17% Similarity=0.138 Sum_probs=114.3
Q ss_pred CeEEEEEcCCCCcEEEEEe---CCCeEEEEeccCcceeee-eccccCCeEEEEECCCCCEEEEEeCCCcEEEEE-cCCCc
Q 001367 844 TATSLAFNPHDNNVIAIGM---DDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG 918 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~---~dg~i~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd-~~~~~ 918 (1091)
.+.+.++++ +++.+|... ....++++.. +..... +.+ ..++...|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 666665544 2335555543 333222 233 3688899999988877766677677774 23322
Q ss_pred eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe----cCeEEEEEcC---Cc--cee---eeeecCCccCEEEEEEe
Q 001367 919 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS 986 (1091)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~----d~~i~vwd~~---~~--~~~---~~~~~~h~~~v~~v~fs 986 (1091)
.. ...+...... ..|..+.+||||..+|... ++.|.+--+. .+ ..+ ..........++.+.|.
T Consensus 100 ~~-~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GE-PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ce-eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 11 1112221111 1599999999999999843 5677776543 22 111 11111225688999999
Q ss_pred eCCCEEEEEEcCCc-EEE-EeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCC
Q 001367 987 CDCRMVFTSFVDGT-LSI-HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1064 (1091)
Q Consensus 987 ~dg~~l~t~~~dg~-v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~ 1064 (1091)
+++.+++.+...+. +.. .....+... .++.. ...+..+.+.-+| .. +.+.+++.+.- ...+.
T Consensus 175 ~~~~L~V~~~~~~~~~~~~v~~dG~~~~-------~l~~~--~~~~~v~a~~~~~---~~-~~~t~~~~~~~---~~~~~ 238 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVRLVSVDGGPST-------PLPSV--NLGVPVVAVAASP---ST-VYVTDDGGVLQ---SRSGA 238 (253)
T ss_pred CCCEEEEEeCCCCCceeEEEEccCCccc-------ccCCC--CCCcceEEeeCCC---cE-EEEECCCcEEE---CCCCC
Confidence 99998776655443 333 333222211 11111 2223334444443 23 44555555443 56677
Q ss_pred CcccCCCCccc
Q 001367 1065 TWAVLPPDEIV 1075 (1091)
Q Consensus 1065 ~~~~~~~~~~~ 1075 (1091)
.|...+.....
T Consensus 239 ~W~~v~~~~~~ 249 (253)
T PF10647_consen 239 SWREVPGGVGD 249 (253)
T ss_pred cceEccCCCCC
Confidence 78887765543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00012 Score=79.88 Aligned_cols=182 Identities=14% Similarity=0.138 Sum_probs=117.0
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCce--eeecCCCCcEEEEEEcC-CCCEEEEEecCCCCceEEEEEecC
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
.+.+++.....+...++.|..+|.|-+-.++..... .....+...+++++|++ |.+.|+++......+..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 344555444444567888888999988877654332 23444556789999988 667788776544567779999998
Q ss_pred Cc--eeeE--EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeEEEEeCCCCCCCCceEEEcc-CCCEE
Q 001367 564 EG--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLL 637 (1091)
Q Consensus 564 ~~--~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l 637 (1091)
++ .+.. .|.+. ......+++|-.+.+.+++|.....+.++|++.. .....+. ...+..+..+| .+.++
T Consensus 138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence 87 2222 22221 1245668889888889999999999999998732 1111111 12356778888 67777
Q ss_pred EEEECCCeEEEEECCCC--Ceeccccccc----ccceeeeeccc
Q 001367 638 AVIANENRIKILETPES--NSVDAAGVLS----DNLRKLSVNPI 675 (1091)
Q Consensus 638 ~~~~~dg~i~iwd~~~~--~~~~~~~~~~----~~v~~~~~~~~ 675 (1091)
++-. ||.|.+||.... ..+..+.... ..+..++++|.
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence 7665 899999994322 2222222222 24778888775
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.025 Score=66.89 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=100.6
Q ss_pred CCcEEEEE-eCCCeEEEEeccCcceeeeeccccCC-eEEEEECCCC-------CEEEEEeCCCcEEEEEcCCCceeeeee
Q 001367 854 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDAL-------NILVSSGGDAQIFVWDVDGWGIQTCRS 924 (1091)
Q Consensus 854 ~~~~la~g-~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg-------~~las~s~Dg~i~vwd~~~~~~~~~~~ 924 (1091)
+.++|+.. .....|+-.|+..|+.+..+..|... |..+ .|+. ..-..|-.+..+..||..-.. ..+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 44454443 34578999999999999999887754 5544 4432 223446677789999987532 112
Q ss_pred eeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEE
Q 001367 925 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 1004 (1091)
Q Consensus 925 ~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iw 1004 (1091)
+.............+|++-+.+|...+.+.+|.|++||- .|..-...+++-..+|..|..+.||++|++.+ +..+.++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 211110111113477888888888777789999999994 45555666667789999999999999988654 5678888
Q ss_pred eCC
Q 001367 1005 EAS 1007 (1091)
Q Consensus 1005 d~~ 1007 (1091)
++.
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.039 Score=60.35 Aligned_cols=214 Identities=11% Similarity=0.122 Sum_probs=115.1
Q ss_pred ccccCCCCCceeeecCCCCCCCCCeeEEEecCC----CCEEEEEe----------C-CeEEEEEccCc----eeEEEe--
Q 001367 780 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILTI-- 838 (1091)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d----g~~la~~~----------d-g~i~iwd~~~~----~~~~~~-- 838 (1091)
++.|+.+.+.+....+....+-..+..+.+..+ ..++++|. . |.|.++++... ..+..+
T Consensus 5 ~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~ 84 (321)
T PF03178_consen 5 RLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS 84 (321)
T ss_dssp EEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE
T ss_pred EEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE
Confidence 444555555555555543222222233334432 46777764 1 78999999884 122211
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc-eeeeecc-ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001367 839 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 839 ~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-~~~~l~~-h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
....++|++++-- +++ |+++. .+.|.+|++...+ ....-.- ....++++... +++++.|...+.+.++..+.
T Consensus 85 ~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 85 TEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred EeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence 1246778888766 344 44343 4789999998877 3322211 22245555544 66999999888888886654
Q ss_pred CceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCC-------cc-eeeeeecCC-ccCEEEE---
Q 001367 917 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA--- 983 (1091)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~-------~~-~~~~~~~~h-~~~v~~v--- 983 (1091)
..... ..+..-.. . ..++++.|-+|++.+++ -.+|.+.++.... +. .+.....-| ...|+++
T Consensus 159 ~~~~l-~~va~d~~-~---~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 159 ENNKL-ILVARDYQ-P---RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp TTE-E-EEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred cCCEE-EEEEecCC-C---ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 22111 11211111 1 25888999867665555 4678899887762 12 222111122 5667777
Q ss_pred EEee--CCC------EEEEEEcCCcEEEE
Q 001367 984 TFSC--DCR------MVFTSFVDGTLSIH 1004 (1091)
Q Consensus 984 ~fs~--dg~------~l~t~~~dg~v~iw 1004 (1091)
.+.| .+. .++.++.+|.|.+.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 5455 222 47778899998843
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.73 Score=55.72 Aligned_cols=244 Identities=8% Similarity=0.014 Sum_probs=122.4
Q ss_pred ccEEEEEECCCCCEEEEEECC-----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC-----Cc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 466 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~ 466 (1091)
-.+..+.|||||++||.+... ..|++-|+.+|..+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 456778999999999987432 3688999988863321 1222 1 146999999985 33333222 46
Q ss_pred EEEEeCCCC--ceeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCC--CCceeeecCCCCcEEEEEEcC
Q 001367 467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 539 (1091)
Q Consensus 467 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~~~~~~~~~~~~~i~~~~~s~ 539 (1091)
|..+++.++ +....+........ +....+.++.+++..+.. +.+.+++.+. ................+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 888888888 33333443333333 222224355555444333 4588888532 222222222222222222 2
Q ss_pred CCCEEEEEecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEE--ECCCCeeEEEE
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW--DMNKVQLLTTI 616 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iw--d~~~~~~~~~~ 616 (1091)
.+..+...+..+.....|...++.. ++. ..+..+. ....+..+.+. .+..+++...+|.-+++ +..++ .+..+
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l 353 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGI 353 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEe
Confidence 2344444443333345566666652 222 2333331 12367777776 33445556667765554 44333 33433
Q ss_pred eCCCCCCCCceEEEc--cCCC-EEEEEEC---CCeEEEEECCCC
Q 001367 617 DAGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES 654 (1091)
Q Consensus 617 ~~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iwd~~~~ 654 (1091)
..... ..+..+.++ +++. ++++.+. -+.++.+|..++
T Consensus 354 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 354 AFDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred cCCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 32111 112222334 3444 3333332 367888887765
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.21 Score=54.56 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=102.4
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE---EEEECCC----CCEEEEEEC---------C-CE
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN---RVVWSPD----GSLLGVAYS---------K-HI 419 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---~l~~spd----g~~las~~~---------d-~~ 419 (1091)
..|+|.|..+.+.+....+. ....+. .+.|..+ ..+|++|.. . |.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred cEEEEEeCCCCeEEEEEECC------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 45888888888877654432 223333 4445443 578888743 2 88
Q ss_pred EEEEEeeCC----cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-eeEEec-CCCcceEEEee
Q 001367 420 VQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE-GHGAPVYSLCP 493 (1091)
Q Consensus 420 i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~v~~~~~ 493 (1091)
|.++++... ..++.... ....++|++++-- ++. ++.+. .+.|.+|++...+ ....-. .....+.++..
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred EEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 999999984 22332222 2457789998776 343 33333 4789999998877 333221 12235555554
Q ss_pred cccCCceEEEEEecCCeEEEEecCCCCc-eee--ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 494 HAKENIHFIFSISVDGKIKAWLYDSLGA-RVD--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~--~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
. +.+++.|...+.+.++.++.... ... -......++++.|-++++.++++-. .+.+.++...
T Consensus 138 --~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~ 202 (321)
T PF03178_consen 138 --F--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYN 202 (321)
T ss_dssp --E--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-
T ss_pred --c--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEEC
Confidence 2 24889999888888886655332 222 2223456888888877766655533 5557666544
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.99 E-value=1.4 Score=53.20 Aligned_cols=205 Identities=13% Similarity=0.148 Sum_probs=120.1
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcc--------eEEEeeccc--------------CCceEEEEEecCCeEEEE
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHAK--------------ENIHFIFSISVDGKIKAW 514 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~~--------------~~~~~l~s~~~dg~i~iw 514 (1091)
.++.++.++.|.-.|..+|+.+.++...... ...+++... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777888888898889888776532211 112222211 133478888899999999
Q ss_pred ecCCCCceeeecCCCC------------cEEEEEEcC--CCCEEEEEecCCC------CceEEEEEecCCceeeEEEecc
Q 001367 515 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 574 (1091)
Q Consensus 515 d~~~~~~~~~~~~~~~------------~i~~~~~s~--d~~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 574 (1091)
|.++++....+..... ....+.-+| .+..+++++...+ .++.|+-+|..+|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9988887765432110 000111122 2334555543222 2678999999999988776531
Q ss_pred ccc--------------ccce-EEEEEcCCCCEEEEEe------------------CCCeEEEEECCCCeeEEEEeCCCC
Q 001367 575 QLQ--------------HNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 621 (1091)
Q Consensus 575 ~~~--------------~~~v-~~v~~~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1091)
... ...+ ...++.++...++.+. ..+.|.-.|.++|+..-.++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 100 0011 2345555555555422 124566778888988877654221
Q ss_pred -------CCCCceEEEcc-CCC---EEEEEECCCeEEEEECCCCCeecccc
Q 001367 622 -------LPENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 622 -------~~~v~~v~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
.....-+.+.. +|+ .++.++.+|.++++|..+++.+....
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 00111122322 553 78999999999999999998776544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0031 Score=69.48 Aligned_cols=93 Identities=20% Similarity=0.423 Sum_probs=71.8
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE-EEEECCCCCEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGVA 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~las~ 414 (1091)
.|..+.|+|.-. |+|.+..+|.|.+..+. -+. +|. +.-|+..++ +++|.|||+.||+|
T Consensus 22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qR-------lwt------------ip~p~~~v~~sL~W~~DGkllaVg 80 (665)
T KOG4640|consen 22 NIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQR-------LWT------------IPIPGENVTASLCWRPDGKLLAVG 80 (665)
T ss_pred ceEEEEEcCccc-hhheeccCCcEEEEEec-cce-------eEe------------ccCCCCccceeeeecCCCCEEEEE
Confidence 788999999988 88999999999998877 333 333 333566666 99999999999999
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 451 (1091)
-.||+|++-|+++|..+... ...-...|.++-|++
T Consensus 81 ~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 81 FKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred ecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 99999999999998755421 122344677777764
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=1.5 Score=53.11 Aligned_cols=244 Identities=9% Similarity=0.018 Sum_probs=122.0
Q ss_pred CcEEEEEcCCCceEEEEEcCCC----cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.+..+.+||||++|+.+.+.+| .|++-|+.+|+.+.. . +.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------ccC---cceEEEEeeCCCEE
Confidence 5777899999996655544444 488999988864422 0 111 11459999999888
Q ss_pred EEEECC------CEEEEEEeeCCcccceeEEEeccccCee-EEEEcCCCCceEEEEee-CCCcEEEEeCC--CCceeEEe
Q 001367 412 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF 481 (1091)
Q Consensus 412 as~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~~~l~s~~-~d~~i~iwd~~--~~~~~~~~ 481 (1091)
+....+ ..|+.+++.++..-... .+.+...... .+..+.|++.+++-+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776542 36778888877321111 2332222233 33445588853322222 34578888843 34322222
Q ss_pred cCCCcceEEEeecccCCceEEEEEec---CCeEEEEecCCCCc-eeeecCC-CCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGA-RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~-~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
.........+. + ..+ .+.+.... ...|...++..... ...+... ...+..+.+. ++.|+..... .+...
T Consensus 266 ~~~~~~~~~~~-~-~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-H-YQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS 339 (686)
T ss_pred ECCCCCEEEEE-e-CCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence 21122222222 1 112 23332222 12344444442222 2233332 2367777776 4455544432 34666
Q ss_pred EEEEecCCceeeEEEe-cccccccceEEEEEc--CCCC-EEEEEe---CCCeEEEEECCCCe
Q 001367 557 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 611 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~ 611 (1091)
+++++..++. +..+. ... ..+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7888865443 33332 111 123333344 4444 333332 45778888988765
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0021 Score=43.87 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.2
Q ss_pred cceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 875 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 875 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345566778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.76 Score=50.77 Aligned_cols=84 Identities=12% Similarity=0.251 Sum_probs=57.9
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC-----------------CCE
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----------------KDQ 592 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----------------~~~ 592 (1091)
..+.+++.+|++++.++. |.-|.|.++|+.++..++.++|.. ...+.-+..... ..+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence 357889999998877664 346779999999999999888866 222211111111 112
Q ss_pred E-EEEeCCCeEEEEECCCCeeEEEEeCC
Q 001367 593 I-LAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 593 l-~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1091)
| +-+-.-|.|.||.+.+|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 2 23678899999999999988777653
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0046 Score=68.15 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeE-EEEECCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 921 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~ 921 (1091)
..+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577889999 88899999999999999988 777888887777787 99999999999999999999999999976433
Q ss_pred eeeeeccCCCcCCCCCceEEEEc
Q 001367 922 CRSLQTPDGVMTLAPSETHIQFH 944 (1091)
Q Consensus 922 ~~~~~~~~~~~~~~~~i~~l~fs 944 (1091)
... .... ..|.++.|+
T Consensus 99 ~~~----~s~e---~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFL----FSVE---TDISKGIWD 114 (665)
T ss_pred ccc----cccc---cchheeecc
Confidence 221 1111 257777776
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.4 Score=52.93 Aligned_cols=83 Identities=8% Similarity=0.056 Sum_probs=56.7
Q ss_pred CCCCeeEEEecCCCCEEEEEeC-CeEEEEEccCceeEEEecCCCCCeEE-EEEcCCC----------------Cc-EEEE
Q 001367 800 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHD----------------NN-VIAI 860 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~~----------------~~-~la~ 860 (1091)
....+.+++.+|++++.|+.++ |.|.++|+.++..++..++-.+.-.. +...... .. +++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4456889999999998888764 99999999999988887765432211 1111101 11 3345
Q ss_pred EeCCCeEEEEeccCcceeeeec
Q 001367 861 GMDDSTILIYNARSSEVISKLE 882 (1091)
Q Consensus 861 g~~dg~i~iwd~~~~~~~~~l~ 882 (1091)
+-.-|.|.||.+++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999998887665543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.079 Score=45.47 Aligned_cols=55 Identities=13% Similarity=0.332 Sum_probs=41.9
Q ss_pred CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
+.|++|++|..|++|+-+ +.+..+.... .|..++-... ..++.+..+|+|-+|+-
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~---~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITETD---KVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEeccc---ceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 679999999999999854 5666665443 3667766665 56889999999999973
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.92 Score=47.96 Aligned_cols=157 Identities=11% Similarity=0.028 Sum_probs=82.9
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce
Q 001367 840 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 919 (1091)
Q Consensus 840 ~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~ 919 (1091)
.....+..+..++ ||++++++..-....-||--...-...-..-..+|.+|.|+||+.+.+. ...|.|+.=+......
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCcc
Confidence 3456788888998 8999988876656667765432222222334578999999999887664 4888888877222110
Q ss_pred eeeee-eeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecC--CccCEEEEEEeeCCCEEEEEE
Q 001367 920 QTCRS-LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 920 ~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
.-... ....... -.+..++|.+++...|++..|.+. ...+.|+.-..-... -......|.|.++.+-++ .+
T Consensus 220 ~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG 293 (302)
T PF14870_consen 220 TWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LG 293 (302)
T ss_dssp EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-
T ss_pred ccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-EC
Confidence 00011 1111111 137899999999999998888554 344455443332221 255788999987766555 45
Q ss_pred cCCcEEEE
Q 001367 997 VDGTLSIH 1004 (1091)
Q Consensus 997 ~dg~v~iw 1004 (1091)
.+|.+.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 88877655
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.78 E-value=1.1 Score=48.79 Aligned_cols=113 Identities=24% Similarity=0.288 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC----CCEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLL 411 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l 411 (1091)
..+.|+|.|||+ ++++ ...|.|.+++ ..+..... +-++ ..+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~----v~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTP----VADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEE----EEE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcce----eccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 578999999997 6555 5589999999 55554110 0000 0123445678899999994 4433
Q ss_pred EEEECC--------CEEEEEEeeCCc-cc---cee-EEEec---cccCeeEEEEcCCCCceEEEEeeCCC
Q 001367 412 GVAYSK--------HIVQLYAYHGGS-DA---RQQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 412 as~~~d--------~~i~iwd~~~~~-~~---~~~-~~~~~---h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
++.+.. ..|.-|....+. .+ +.+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 333321 245555555441 11 111 11122 223456799999996 455555443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.42 Score=52.87 Aligned_cols=285 Identities=11% Similarity=0.090 Sum_probs=148.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCe-----eEEEEeCCCCCCCCceEEEc---c--CCCEEEEEECCCeEEEEECCCC--C--
Q 001367 590 KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFN---K--NGTLLAVIANENRIKILETPES--N-- 655 (1091)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s---~--~~~~l~~~~~dg~i~iwd~~~~--~-- 655 (1091)
...+++||..|.++||+..... ++...... .+|..+... + +...||+ -.-..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 4689999999999999986533 22222222 235555432 2 2334554 45577888877311 1
Q ss_pred -----eecccccccc--cceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecC
Q 001367 656 -----SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 728 (1091)
Q Consensus 656 -----~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 728 (1091)
.+..+..|.- ....+...|.+. ......+..-+.||.+.+++-+.-. ....++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg----------------~~~~~~IcVQS~DG~L~~feqe~~~----f~~~lp 172 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGG----------------VKGRDFICVQSMDGSLSFFEQESFA----FSRFLP 172 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCC----------------CCCceEEEEEecCceEEEEeCCcEE----EEEEcC
Confidence 1112222211 122222322221 2234667778899999999865211 112222
Q ss_pred CccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccce----------eeccCCccccCCCCCceeeecCCCC
Q 001367 729 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA----------TTKVPPRLYQPRHGPQFMVNDTTDS 798 (1091)
Q Consensus 729 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1091)
..... ..+++.+....+++++.+..+..|++..-........ ....-..-|...-|+...
T Consensus 173 ~~llP---gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l------- 242 (418)
T PF14727_consen 173 DFLLP---GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL------- 242 (418)
T ss_pred CCCCC---cCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE-------
Confidence 21112 2468888888899999999999988754322111111 111112224444444222
Q ss_pred CCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEE------cCCCCcEEEEEeCCCeEEEEec
Q 001367 799 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF------NPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~------s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
.+..+.++.....+++-+...+.+.+- +|......+-...+.....| .+..+..+++++.++++.||.=
T Consensus 243 ----~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d 317 (418)
T PF14727_consen 243 ----DIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED 317 (418)
T ss_pred ----EEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC
Confidence 233334444455566666677777764 45444333322222222222 2211235888999999999964
Q ss_pred cCcceeeeeccccCCeEEEEE---CCCCCEEEEEeCCCcEEEEEcCC
Q 001367 873 RSSEVISKLEGHSKRVTGLVF---SDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 873 ~~~~~~~~l~~h~~~V~~l~~---spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
. +.+..-.....+| ++.. ..-...|++-+.+|.+.+-=+.+
T Consensus 318 ~--~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 318 T--TLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred C--eEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 3 3333322222333 3333 33356788899999998887776
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.17 Score=52.63 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe-ccCccee
Q 001367 802 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 878 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd-~~~~~~~ 878 (1091)
..+.+.++|+||+.+|... ++.-.+|-...+....... ....++...|++ ++.+.++...+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999888766 5544444444444333332 333788889999 677777777666667663 3333322
Q ss_pred -eeec--cccCCeEEEEECCCCCEEEEEe---CCCcEEEEEcCCCcee----eeeeeeccCCCcCCCCCceEEEEcCCCC
Q 001367 879 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 879 -~~l~--~h~~~V~~l~~spdg~~las~s---~Dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 948 (1091)
..+. .-.+.|+++.+||||..+|... .++.|.+=-+...... ....+...... ...+..++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence 1111 1122899999999999988665 3577777665432211 11112222111 13688999999999
Q ss_pred EEEEE
Q 001367 949 RFLLV 953 (1091)
Q Consensus 949 ~la~~ 953 (1091)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88874
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.035 Score=60.11 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=94.5
Q ss_pred CCCEEE-EEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEE-----EEeeCCCcEEEEeCCCC-c-ee
Q 001367 407 DGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVTG-S-RT 478 (1091)
Q Consensus 407 dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l-----~s~~~d~~i~iwd~~~~-~-~~ 478 (1091)
+..+|. ++.....++--|++.|+.+. ++.-|.. |+-+.+.|+.+.-.+ +.|-.|..|.-||++-. . .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444444 34445568888999998766 4444554 888888887652112 23445888999998732 2 22
Q ss_pred EEecCCC----cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 479 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 479 ~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
..-++|. ....|.+- ..+| +++.|+.+|.|++||--......-+.+-+.+|..+..+.||+++++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2223332 22333333 4444 899999999999999744444446777788999999999999998765 4
Q ss_pred eEEEEEec
Q 001367 555 SFLVEWNE 562 (1091)
Q Consensus 555 ~~i~iwd~ 562 (1091)
.++.+.+.
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 45666654
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0029 Score=43.07 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=32.3
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd 363 (1091)
....+..|...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 4566778999999999999997 679999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.092 Score=57.07 Aligned_cols=145 Identities=9% Similarity=0.102 Sum_probs=101.3
Q ss_pred EEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCE--E-----EEEeCCCcEEEEEcCCCceeeeeeeeccC
Q 001367 857 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD 929 (1091)
Q Consensus 857 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~--l-----as~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 929 (1091)
++.++.....++-.|++.|+.+..+.-|.+ |+-+.+.|+.+. | +.|=.|..|+-||..-.... .+...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 444555666888899999999999987777 777888887632 2 22456777999998743221 111112
Q ss_pred CCcC-CCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 930 GVMT-LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 930 ~~~~-~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
++.- .-....|.+-..+|...+.+.+|.|++||- .+..-.+.+++-..+|..|..+.||++|+.. .+.++.+-++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 2211 002355666667777666689999999997 6777777788889999999999999998854 46677777654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.12 Score=60.75 Aligned_cols=195 Identities=9% Similarity=-0.003 Sum_probs=104.7
Q ss_pred CCcEEEEEeCC------CeEEEEeccCcce--eeeeccccCCeEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCcee
Q 001367 854 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ 920 (1091)
Q Consensus 854 ~~~~la~g~~d------g~i~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~las~s~Dg-----~i~vwd~~~~~~~ 920 (1091)
++.+.++|+.+ ..+..||..+.+- +..+.........+ .-+|+..+.||.++ .+..||..+.+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 66777888754 3578888877643 22222111122222 23678888888764 4788998875533
Q ss_pred eeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ec-----------------------CeEEEEEcCCcceeeeeecCC
Q 001367 921 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------------------THLAIYEAEELTCLKQWFPIS 976 (1091)
Q Consensus 921 ~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d-----------------------~~i~vwd~~~~~~~~~~~~~h 976 (1091)
....+..... ....+ .-+|+..+.| .+ ..+..||..+.+....-...
T Consensus 381 ~~~~mp~~r~------~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~- 451 (557)
T PHA02713 381 MLPDMPIALS------SYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW- 451 (557)
T ss_pred ECCCCCcccc------cccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-
Confidence 2211111111 11122 2366666664 22 24778888877653221111
Q ss_pred ccCEEEEEEeeCCCEEEEEEcCC------cEEEEeCCC-CceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEe
Q 001367 977 SVPISQATFSCDCRMVFTSFVDG------TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1049 (1091)
Q Consensus 977 ~~~v~~v~fs~dg~~l~t~~~dg------~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~ 1049 (1091)
......-+..-+|+..+.|+.++ .|..||..+ .+... ...++.. .....++.. ++...++||
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~----~~~m~~~-----r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL----ITTTESR-----LSALHTILH--DNTIMMLHC 520 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE----ccccCcc-----cccceeEEE--CCEEEEEee
Confidence 11222223345677777777542 467888887 55441 1122222 111112222 578999999
Q ss_pred cCC--cEEEEecCCCCCCcccCCCC
Q 001367 1050 TNG--EVYVIEPNEPGDTWAVLPPD 1072 (1091)
Q Consensus 1050 ~dg--~v~~w~~~~~~~~~~~~~~~ 1072 (1091)
.|| ++-.+|+...+ |....|-
T Consensus 521 ~~~~~~~e~yd~~~~~--W~~~~~~ 543 (557)
T PHA02713 521 YESYMLQDTFNVYTYE--WNHICHQ 543 (557)
T ss_pred ecceeehhhcCccccc--ccchhhh
Confidence 999 77788886644 8766553
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.092 Score=45.07 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=65.7
Q ss_pred eEEEEECC---CC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEc
Q 001367 888 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 963 (1091)
Q Consensus 888 V~~l~~sp---dg-~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~ 963 (1091)
|++|++.. || +.|+.||.|..|++|+=+. .+...... ..++.++-...+++..+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 67777764 32 6799999999999998765 22222111 2578888888877666678999999985
Q ss_pred CCcceeeeeecCCccCEEEEEEee---CC-CEEEEEEcCCcEEE
Q 001367 964 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLSI 1003 (1091)
Q Consensus 964 ~~~~~~~~~~~~h~~~v~~v~fs~---dg-~~l~t~~~dg~v~i 1003 (1091)
.. +.|...-...+.++++.. || .-|++|-.+|.|-+
T Consensus 71 ~~----RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 SQ----RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cc----eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 32 222222234466666544 33 35888888888753
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.95 Score=46.13 Aligned_cols=186 Identities=9% Similarity=0.106 Sum_probs=114.0
Q ss_pred CCeeEEEecCCCCEEEEEe-C--CeEEEEEccCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce
Q 001367 802 EAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 877 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~ 877 (1091)
.-...+.|..+|.++-+.+ . ..|+.+|+.+++..+...-+. ----.++.. ++++....-.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3456788878888777776 3 469999999999876654333 233455555 345666667889999999999888
Q ss_pred eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecC
Q 001367 878 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 956 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~ 956 (1091)
+.++. ..+.=..++ .||+.|+.+.....|.++|.++-+......+.. .+... ..+.-+.+- +|...|-. ...
T Consensus 123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv--~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPV--SNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE-----EEEEEEE-TTEEEEEETTSS
T ss_pred EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEEC--CCcEeEEEE-cCEEEEEeCCCC
Confidence 88776 345667777 467777776667779999988755443322221 22111 245556665 56555543 567
Q ss_pred eEEEEEcCCcceeeeeecC-----------C---ccCEEEEEEeeCCCEEEEEE
Q 001367 957 HLAIYEAEELTCLKQWFPI-----------S---SVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 957 ~i~vwd~~~~~~~~~~~~~-----------h---~~~v~~v~fs~dg~~l~t~~ 996 (1091)
.|...|..+|+....+-.. + ..-...|++.|++..+...+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 8888899999877643110 1 23467899998776555444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.069 Score=63.31 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=97.5
Q ss_pred CceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc-eEEEeeccc---CCceEEEEEecCCeEEEEecCCCCceeee-c--
Q 001367 454 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVDY-D-- 526 (1091)
Q Consensus 454 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-- 526 (1091)
+.++|........|+-.|++.|+.+..+..|... |..++.... -+....+.|-.+..+..||.+-....... .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3334555556788999999999999999887754 776654211 01234667778888999999875422211 1
Q ss_pred --CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEE
Q 001367 527 --APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1091)
Q Consensus 527 --~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~i 604 (1091)
.......|++-+.+|. ||+|+. +|.|++||-...+....+.+.. .+|..|..+.||+++++.+. ..+.+
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLlL 643 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLLL 643 (794)
T ss_pred ccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEEE
Confidence 1233577888777775 566655 5559999954444444455544 89999999999999988775 35555
Q ss_pred EEC
Q 001367 605 WDM 607 (1091)
Q Consensus 605 wd~ 607 (1091)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 553
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=2.3 Score=46.46 Aligned_cols=156 Identities=10% Similarity=0.018 Sum_probs=86.0
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcC
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 964 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~ 964 (1091)
.+.+.++.+.|++.++++ +..|.+.. ..+.+. .....+... .. ..+.++.+.++++.++++..|.+.+=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~-s~~~gg-~tW~~~~~~--~~---~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYS-TWEPGQ-TAWTPHQRN--SS---RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEE-EcCCCC-CeEEEeeCC--Cc---ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 457889999999877664 45564432 111111 011112111 11 36889999999999888887876543344
Q ss_pred CcceeeeeecC---CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCC
Q 001367 965 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1041 (1091)
Q Consensus 965 ~~~~~~~~~~~---h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1041 (1091)
.|..-.....+ ....+.++.|.+++..++ ++.+|.|. .....|+.-.........+. ..+ .+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence 44432221111 134578899999888666 45677654 45555543322211111111 233 233443
Q ss_pred CCeEEEEecCCcEEEEec
Q 001367 1042 PTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1042 ~~~l~~g~~dg~v~~w~~ 1059 (1091)
++....++..|.|..|+-
T Consensus 313 ~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCceEEECCCceEEEecC
Confidence 345666778899988875
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=1.4 Score=44.94 Aligned_cols=200 Identities=16% Similarity=0.246 Sum_probs=120.1
Q ss_pred cccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEec
Q 001367 731 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 810 (1091)
Q Consensus 731 ~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 810 (1091)
+-...+.+++|+|+.+.|++........|+= ...|..+.+..+.+ -.....+++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence 3455599999999999999998876655542 23455566666654 3345567777
Q ss_pred CCCCEEEEEe-CCeEEEEEccCceeEEE-------e---cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc-e-
Q 001367 811 KNDAYLFSAS-GGVISLYIVMTFKTILT-------I---MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-V- 877 (1091)
Q Consensus 811 ~dg~~la~~~-dg~i~iwd~~~~~~~~~-------~---~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-~- 877 (1091)
.+|+++++-. ++.+.++.+........ + ...+..-..+||+| ..+.|..+-+-.=+.||.+..+. .
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 7888777765 67787777664422211 1 11245678899999 55666667766667777665332 1
Q ss_pred -eeeecccc-------CCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCC
Q 001367 878 -ISKLEGHS-------KRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 878 -~~~l~~h~-------~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 948 (1091)
+.....+. ..|.++.|.+ .+.+|+-+.+++.+...|................|-...-.....++..++|.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 11111222 3467778876 45666767778888888877654222222223333222223445677777777
Q ss_pred EEEEEecC
Q 001367 949 RFLLVHET 956 (1091)
Q Consensus 949 ~la~~~d~ 956 (1091)
+-+++.-+
T Consensus 297 lYIvSEPn 304 (316)
T COG3204 297 LYIVSEPN 304 (316)
T ss_pred EEEEecCC
Confidence 66555443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.39 Score=56.42 Aligned_cols=235 Identities=12% Similarity=0.085 Sum_probs=130.6
Q ss_pred CCCCEEEEEe-C------CeEEEEEccCceeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCC-C-----eEEEEeccCcc
Q 001367 811 KNDAYLFSAS-G------GVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDD-S-----TILIYNARSSE 876 (1091)
Q Consensus 811 ~dg~~la~~~-d------g~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~d-g-----~i~iwd~~~~~ 876 (1091)
..+..++.|+ . ..+..||..++.-.....- ....-.++++. ++.+.++|+.| | ++..||..+.+
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3445555554 2 3588899887643322221 22233445555 56788899988 3 78888888765
Q ss_pred ee--eeeccccCCeEEEEECCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCE
Q 001367 877 VI--SKLEGHSKRVTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 949 (1091)
Q Consensus 877 ~~--~~l~~h~~~V~~l~~spdg~~las~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 949 (1091)
-. ..+...........+ +|...|+||.||. |..||..+.+......+... .-..-...-+|+.
T Consensus 361 W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGKL 430 (571)
T ss_pred eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCEE
Confidence 33 223222222222222 6888899999974 77788777553221111111 1122333446666
Q ss_pred EEE-Eec------CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCc-----EEEEeCCCCceEEEeec
Q 001367 950 FLL-VHE------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-----LSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 950 la~-~~d------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~-----v~iwd~~~~~~~~~~~~ 1017 (1091)
.++ |.+ ..+..||..+.......... ..+...-.-.-++...+.||.|+. |..+|..+.+.... .
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~-~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~- 507 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN-TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-A- 507 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcc-cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-c-
Confidence 666 323 35889998887765432111 111111233456778888887763 78888888766532 1
Q ss_pred ccccCCCCcccccceeEEEeCCCCCCeEEEEecCC-----cEEEEecCCCCCCcccCCC
Q 001367 1018 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1071 (1091)
Q Consensus 1018 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg-----~v~~w~~~~~~~~~~~~~~ 1071 (1091)
..+.. ...+. ++.. ++...++|+.|| +|-.||... .+|...++
T Consensus 508 --~m~~~--rs~~g--~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~--d~W~~~~~ 555 (571)
T KOG4441|consen 508 --PMTSP--RSAVG--VVVL---GGKLYAVGGFDGNNNLNTVECYDPET--DTWTEVTE 555 (571)
T ss_pred --cCccc--ccccc--EEEE---CCEEEEEecccCccccceeEEcCCCC--CceeeCCC
Confidence 11111 11111 1112 478899999987 567787755 44876665
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.2 Score=48.32 Aligned_cols=239 Identities=14% Similarity=0.096 Sum_probs=102.0
Q ss_pred CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE--C----CC
Q 001367 345 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--S----KH 418 (1091)
Q Consensus 345 dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~--~----d~ 418 (1091)
+.++|++-|-.++.|.|.|+.+...... -.++.+... .+. +..-.....+---|+|+.++++- . .|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~-l~KvIe~~e---v~~----k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~G 157 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPR-LHKVIEPEE---VFE----KTGLSRPHTVHCLPDGRIMISALGDADGNGPG 157 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-E-EEEEE-HHH---HHH----HH-EEEEEEEEE-SS--EEEEEEEETTS-S--
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCc-eEeeeCHHH---HHh----hcCCCCCceeeecCCccEEEEeccCCCCCCCC
Confidence 4566666666789999999985432211 011111100 000 00011222334456888888862 2 24
Q ss_pred EEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEeeC--------------------CCcEEEEeCCCCce
Q 001367 419 IVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGD--------------------DKTIKVWDAVTGSR 477 (1091)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~--------------------d~~i~iwd~~~~~~ 477 (1091)
.+.+.|-++-+..... +.. +....-..+-|.|.-+ +++|... ..++.+||+.+.+.
T Consensus 158 gf~llD~~tf~v~g~W-e~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 158 GFVLLDGETFEVKGRW-EKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp EEEEE-TTT--EEEE---SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred cEEEEcCcccccccee-ccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 5777776654432211 111 1122345666777666 6666542 46899999999999
Q ss_pred eEEecCCC--cceEEEeecccCCceE-EEEEecCCeEEEEecCCCCc-----eeeecCC-----------------CCcE
Q 001367 478 TYSFEGHG--APVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGA-----RVDYDAP-----------------GLGC 532 (1091)
Q Consensus 478 ~~~~~~~~--~~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----------------~~~i 532 (1091)
++++.--. .....+.|..+++..+ ++.+.....|..|--..... ...+... ..-+
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 99986433 2355677766665544 34444455555553322211 1111110 2246
Q ss_pred EEEEEcCCCCEEEEEecCCCCceEEEEEecCCc---eeeEEEe-cccc------------cccceEEEEEcCCCCEEEEE
Q 001367 533 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQ-GLQL------------QHNSVSVVHFDTAKDQILAA 596 (1091)
Q Consensus 533 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~-~~~~------------~~~~v~~v~~~~~~~~l~~~ 596 (1091)
+.+..|.|.++|..+.. ..+.|+.||+... +++.... +... -.+....+..|-||++++..
T Consensus 315 tDI~iSlDDrfLYvs~W---~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNW---LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp --EEE-TTS-EEEEEET---TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EeEEEccCCCEEEEEcc---cCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 88999999999998764 4667999999863 2222211 1110 01223566777777777765
Q ss_pred e
Q 001367 597 G 597 (1091)
Q Consensus 597 s 597 (1091)
.
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 3
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.47 Score=55.74 Aligned_cols=234 Identities=11% Similarity=0.026 Sum_probs=120.7
Q ss_pred CCCEEEEEECC------CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC------CcEEEEeCCC
Q 001367 407 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT 474 (1091)
Q Consensus 407 dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~~ 474 (1091)
.+..+++|+.+ ..+..||..++.-.. ...+. +...-.+++... +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 44556666655 367888888763221 11122 222233444443 44 77888888 3677888887
Q ss_pred CceeE--EecCCCcceEEEeecccCCceEEEEEecCCe-----EEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 475 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
.+-.. .+...........+ +|.+.++|+.||. +..||..+.+-...-......-..-...-+|+..++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 76332 11111111111112 6678888998875 6667766544322222222111112223467777777
Q ss_pred ecCCCCc--eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEeCCC
Q 001367 548 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 548 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~ 620 (1091)
|.++..+ ..+..||..+......-.... ...... ++. -++...+.||.|+ +|..||..+.+....-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7555432 678899988876543332222 011122 222 2455666677665 37788888876655432222
Q ss_pred CCCCCceEEEccCCCEEEEEECCC-----eEEEEECCCC
Q 001367 621 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPES 654 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 654 (1091)
....+..+. -+++..++|+.|| +|..||..++
T Consensus 512 ~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 211112222 2466777777764 4556665554
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.05 E-value=3 Score=45.56 Aligned_cols=240 Identities=14% Similarity=0.166 Sum_probs=119.7
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEEccCcee---EEEe----cCCCCCeEEEEEcCC---CCcEEEEEeCC--------
Q 001367 803 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD-------- 864 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---~~~~la~g~~d-------- 864 (1091)
..+.|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 45789999999998887789999999 44443 2222 123456789999992 24444443321
Q ss_pred CeEEEEeccCc-------ce-eeeecc---ccCCeEEEEECCCCCEEEEEeCCCc-------------EEEEEcCCCcee
Q 001367 865 STILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-------------IFVWDVDGWGIQ 920 (1091)
Q Consensus 865 g~i~iwd~~~~-------~~-~~~l~~---h~~~V~~l~~spdg~~las~s~Dg~-------------i~vwd~~~~~~~ 920 (1091)
..|.-|....+ +. +..+.. .......|+|.|||.+.++.+..+. |.-.+... ...
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence 24444544433 11 122222 2234566999999988887765442 21112111 000
Q ss_pred eeeee--------e-ccCCCcCCCCCceEEEEcCC-CCEEEE--EecCeEEEEEcCCccee-------------------
Q 001367 921 TCRSL--------Q-TPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTCL------------------- 969 (1091)
Q Consensus 921 ~~~~~--------~-~~~~~~~~~~~i~~l~fs~d-g~~la~--~~d~~i~vwd~~~~~~~------------------- 969 (1091)
..... . ...|+ .....++|.|. |.+.++ +.+..=.|.-+..|..-
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 00000 0 00011 12467999999 777776 44432222222222110
Q ss_pred --------eeeecCCccCEEEEEEee-------CCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeE
Q 001367 970 --------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1034 (1091)
Q Consensus 970 --------~~~~~~h~~~v~~v~fs~-------dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1034 (1091)
..+.-.+...+..+.|-. +|.++++.-..+.|....+..+..+.... ..+ . ...-+++.
T Consensus 237 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~~ 310 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPRD 310 (331)
T ss_dssp SS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EEE
T ss_pred cCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCceE
Confidence 000111245667777764 45566665556677777776553332222 111 1 11124567
Q ss_pred EEeCCCCCCeEEEEecCCcEE
Q 001367 1035 IAAHPLKPTQFAVGLTNGEVY 1055 (1091)
Q Consensus 1035 ~~~~p~d~~~l~~g~~dg~v~ 1055 (1091)
+++.| ||.++++-+.+|.|.
T Consensus 311 v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 311 VAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEET-TSEEEEEE-TTTTEE
T ss_pred EEEcC-CCeEEEEECCCCeEe
Confidence 88899 588888888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.071 Score=62.95 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=75.7
Q ss_pred CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
.+..++.|+..|.+-..|+.+. ++....-..-.++|++++|+.||+ .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667888988898988888764 221111122356999999999999 788899999999999999999999988888
Q ss_pred ceEEEeecc-cCCceEEEEEecCCe
Q 001367 487 PVYSLCPHA-KENIHFIFSISVDGK 510 (1091)
Q Consensus 487 ~v~~~~~~~-~~~~~~l~s~~~dg~ 510 (1091)
+..++-+.. ..++..++++...|.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc
Confidence 887775442 334446777777776
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.27 Score=57.85 Aligned_cols=201 Identities=8% Similarity=-0.032 Sum_probs=98.2
Q ss_pred CCCceEEEEeeCC------CcEEEEeCCCCceeE--EecCCCcceEEEeecccCCceEEEEEecCC-----eEEEEecCC
Q 001367 452 PCKQISVITCGDD------KTIKVWDAVTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 518 (1091)
Q Consensus 452 d~~~~~l~s~~~d------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 518 (1091)
++. +.+.||.+ ..+..||..+..-.. .+.........+.+ ++.+.+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 455 56666643 347788877764321 11111111112222 556777777654 377888765
Q ss_pred CCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC-------------------ceEEEEEecCCceeeEEEeccccccc
Q 001367 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN 579 (1091)
Q Consensus 519 ~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-------------------~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1091)
..=...-..........+..-+|+..+.||.++.. ...+..||..+.+-...-.... ...
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~ 455 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTI 455 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccc
Confidence 43221111111111111112356666666643210 2457889988765432222111 011
Q ss_pred ceEEEEEcCCCCEEEEEeCC------CeEEEEECCC-CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC--eEEEEE
Q 001367 580 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 650 (1091)
Q Consensus 580 ~v~~v~~~~~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iwd 650 (1091)
....+. -+++..+.|+.+ ..+..||..+ .+................+++ +++..++|+.++ .+..||
T Consensus 456 ~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 456 RPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcC
Confidence 111222 245555556643 2467899887 554433332222112222223 678888998887 777888
Q ss_pred CCCCCeecccccc
Q 001367 651 TPESNSVDAAGVL 663 (1091)
Q Consensus 651 ~~~~~~~~~~~~~ 663 (1091)
..+.+.......|
T Consensus 532 ~~~~~W~~~~~~~ 544 (557)
T PHA02713 532 VYTYEWNHICHQH 544 (557)
T ss_pred cccccccchhhhc
Confidence 8777555444444
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.13 Score=56.91 Aligned_cols=160 Identities=13% Similarity=0.078 Sum_probs=90.6
Q ss_pred CCCeEEEEEcCCCCcEEEEEe--CCCeEEEEeccCcceeeeeccccCCeEEEEECCC----CCEEEEEeCCCcEEEEEcC
Q 001367 842 SPTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 842 ~~~i~~l~~s~~~~~~la~g~--~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd----g~~las~s~Dg~i~vwd~~ 915 (1091)
-.++..+||.. +.+.+.+.- .+|.+++=| .+.+..| ..|..++|+|- ...|........|.||.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 34788899984 444444432 233333222 1233444 45999999984 3345556778889999987
Q ss_pred CCceeee--eeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEE
Q 001367 916 GWGIQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 992 (1091)
Q Consensus 916 ~~~~~~~--~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l 992 (1091)
....... ..-++-+-..+.+--...+.|+|....|++ .....-.++++......-..-....+.|-+.+|.+||+.|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 3222211 122222222222123457889999999988 3333334455543322221112337889999999999887
Q ss_pred EEEEc-CCcEEEEeCCCC
Q 001367 993 FTSFV-DGTLSIHEASNL 1009 (1091)
Q Consensus 993 ~t~~~-dg~v~iwd~~~~ 1009 (1091)
+++-. .=.-+|||-...
T Consensus 171 VVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEeCCeEEEEEecCchh
Confidence 65533 335788986544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.3 Score=48.31 Aligned_cols=254 Identities=10% Similarity=0.042 Sum_probs=105.5
Q ss_pred CceEEEEEe-cCCeEEEEecCCCCc----eeeecC---CC----CcEEEEEEcCCCCEEEEEec--CCCCceEEEEEecC
Q 001367 498 NIHFIFSIS-VDGKIKAWLYDSLGA----RVDYDA---PG----LGCTRMAYSANGRRLFSCGT--SKEGESFLVEWNES 563 (1091)
Q Consensus 498 ~~~~l~s~~-~dg~i~iwd~~~~~~----~~~~~~---~~----~~i~~~~~s~d~~~l~~~~~--~~~~~~~i~iwd~~ 563 (1091)
+.++|+..+ ..++|.+.|..+... ...+.. .. ..-..+-.-|+|+.++++-. ++++.+-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 335666665 678899999874322 112221 00 12233444589988887654 34556778899988
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCCeeEEEEeCCCCCC
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
+.+.............--..+.+.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888777765442223345677888888888753 23579999999999999998764322
Q ss_pred CCceEEEc--cCCCEEEEEE-CCCeEEEEEC-CCCCee--cccccccccceeeeeccccccccccccCCcccCCCCCCCC
Q 001367 624 ENPRICFN--KNGTLLAVIA-NENRIKILET-PESNSV--DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDV 697 (1091)
Q Consensus 624 ~v~~v~~s--~~~~~l~~~~-~dg~i~iwd~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~ 697 (1091)
....+.|. |+..+-++++ -.++|..|-- ..+.-. ..+......+..-.+.+. ....+..-+.+.....|.|.
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~m--l~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEM--LKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GG--GGGG-EE------EEE-TTS
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccc--ccccccCCCceEeEEEccCC
Confidence 23455654 4444433333 2344554433 333110 000000000000000000 00000001122222237777
Q ss_pred Ccc-cccccccccccccccccC-CcccceeecCCc------------cccccEEEEEEecCCCeEEEeec
Q 001367 698 KPE-ISVEAENKSEVEKPLFAR-PSECQSLLLPSK------------VKANKISRLTYNNGGQAIFALAS 753 (1091)
Q Consensus 698 ~~l-~s~~~d~~i~~w~~~~~~-~~~~~~~~~~~~------------~~~~~i~~~~~s~dg~~l~~~~~ 753 (1091)
++| ++.-.+|.+|.||+.-.. +.....+.+... .-.+...-+..|.||++|..+.+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 776 567788999999976322 222222222211 11234467888889988876653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.84 E-value=4 Score=45.37 Aligned_cols=279 Identities=13% Similarity=0.096 Sum_probs=147.4
Q ss_pred CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC-----CCCEEEEE
Q 001367 745 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFSA 819 (1091)
Q Consensus 745 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----dg~~la~~ 819 (1091)
...|++|+..|.++||+-......+. ..+.... -..+|..++.-+ +...||+-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEEe
Confidence 45788999999999998643322111 1122222 234555555322 34567776
Q ss_pred eCCeEEEEEccC--ce-------eEEEecCCC--CCeEEEEEcCC----CCcEEEEEeCCCeEEEEeccCcceeeeeccc
Q 001367 820 SGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEGH 884 (1091)
Q Consensus 820 ~dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 884 (1091)
.-..+.+|.+.. |. .+..+..|. .....++.-|. +..+|.+=+.||.+.+|+-+.-.....+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 678888887731 11 111122222 22333443332 246888999999999999776554444443
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee-------------------eeeeeccCCCcCCCCCceEEEEcC
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-------------------CRSLQTPDGVMTLAPSETHIQFHK 945 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~-------------------~~~~~~~~~~~~~~~~i~~l~fs~ 945 (1091)
.--...+++.+....+++++.+..|.-|....-.... ..-....-|... -.+..+.++.
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~--l~i~v~~~~~ 251 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA--LDIQVVRFSS 251 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee--EEEEEEEcCC
Confidence 2223347788888889999988888888753210000 000000000000 1233444444
Q ss_pred CCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEee----CCC---EEEEEEcCCcEEEEeCCCCceEEEeecc
Q 001367 946 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSC----DCR---MVFTSFVDGTLSIHEASNLEVQCRILST 1018 (1091)
Q Consensus 946 dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~----dg~---~l~t~~~dg~v~iwd~~~~~~~~~~~~~ 1018 (1091)
....+++-.+..+.+.+.. |.......- .-.+.....|.. ++. .+++++.++++.||.=.+....+.+
T Consensus 252 ~~~~IvvLger~Lf~l~~~-G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l--- 326 (418)
T PF14727_consen 252 SESDIVVLGERSLFCLKDN-GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL--- 326 (418)
T ss_pred CCceEEEEecceEEEEcCC-CeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC---
Confidence 5555666556667776653 443332211 111121122222 222 4778889999999975444333222
Q ss_pred cccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 1019 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1019 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
+.. .| .+.++.-++-...|++-+.+|.+.+-=+-.
T Consensus 327 ---~~~----PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 327 ---PHV----PV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred ---CCC----CE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 111 12 223333332357899999999999877733
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.059 Score=63.59 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=69.7
Q ss_pred EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCC
Q 001367 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428 (1091)
Q Consensus 349 llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~ 428 (1091)
++|.|+..|.|...|+.+.-.... | -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~-----~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLH-----Q-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhh-----c-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 568888888888888765311000 0 1123579999999999999999999999999999998
Q ss_pred cccceeEEEeccccC---eeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 429 SDARQQLEIDAHVGN---VNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 429 ~~~~~~~~~~~h~~~---v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
+.++. +..|..+ |..+.+..++. .++++...|. +|.+
T Consensus 163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 77763 4444444 44445555666 6788877775 6654
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.2 Score=59.62 Aligned_cols=248 Identities=9% Similarity=0.059 Sum_probs=136.1
Q ss_pred CCCeeEEEecCCCCEEEEEe--C-CeEEEEEccCceeEE-----EecC------CCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001367 801 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMP------PSPTATSLAFNPHDNNVIAIGMDDST 866 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~--d-g~i~iwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~~~~~la~g~~dg~ 866 (1091)
...+..++..+|+...++.. + -.|..||+.+...-+ .+.. ......++.|.|.=....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44667778888887776654 3 358999987543222 1111 12345677787743445566788999
Q ss_pred EEEEeccCcce-eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcC
Q 001367 867 ILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 945 (1091)
Q Consensus 867 i~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~ 945 (1091)
|++..+..... +..+. -...+++++|+|.|+.++.|-..|++.-|...-.... .+..+.... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 99887754332 22322 4567899999999999999999999988876542211 122222111 13688888887
Q ss_pred CCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCC
Q 001367 946 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1025 (1091)
Q Consensus 946 dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 1025 (1091)
.-.++++-.. -++ . ...+....++. ..-.-+|.+.+-..-.+.. .| ..++...
T Consensus 254 t~eflvvy~n--------~ts----~----~~dpd~y~~~~------~k~kp~g~~nF~E~~d~tp--pf---g~~~rq~ 306 (1405)
T KOG3630|consen 254 TQEFLVVYGN--------VTS----E----TDDPDSYDQKM------YKIKPDGSANFQETFDITP--PF---GQIVRQP 306 (1405)
T ss_pred ceeEEEEecc--------ccc----C----cCCchhhhhcc------ccccCcceeeeccccCCCC--Cc---cccCccc
Confidence 7777765111 000 0 00111111111 1111333333322221111 01 0122221
Q ss_pred cccccceeEEEeCCCCCCeEEEEecC-CcEEEEecCCCCCCcccCCCCccccCCCCcCcccc
Q 001367 1026 SCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGD 1086 (1091)
Q Consensus 1026 ~~~~v~~~~~~~~p~d~~~l~~g~~d-g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1091)
|--.+ ....|.|+|.++++++..- ..|-+|... ..|....+.+...+..+.+++.|
T Consensus 307 h~y~~--~L~~W~~~~~~vVvvansaSsEvsila~~---~qW~~w~~vde~ra~LP~s~k~d 363 (1405)
T KOG3630|consen 307 HMYKV--TLSGWIEPDANVVVVANSASSEVSILASM---KQWIEWSQVDEKRAVLPISEKTD 363 (1405)
T ss_pred hhHHH--hhhhhcccccceEEEecccccchhhhhhh---cceeeccccccceeeecccccCC
Confidence 11111 2346777666666655544 468889883 45888888887555555554444
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.59 E-value=2 Score=42.03 Aligned_cols=144 Identities=15% Similarity=0.106 Sum_probs=79.2
Q ss_pred ccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC--------cceEEEeecccCCceEEEEEecCCeEE
Q 001367 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APVYSLCPHAKENIHFIFSISVDGKIK 512 (1091)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~l~s~~~dg~i~ 512 (1091)
..+.+.-..+|+|++ +.-+-+.-+. ++....|.+-.-+.+|. ..-+.++|+.. ...+.+.-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gry-y~GtMad~~~--~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRY-YGGTMADFGD--DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCce-eeeeeccccc--cccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEEe
Confidence 345667778999993 2222222111 11111222222222332 22344566422 223445566777787
Q ss_pred EEecC--CC-----CceeeecC----CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccce
Q 001367 513 AWLYD--SL-----GARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 581 (1091)
Q Consensus 513 iwd~~--~~-----~~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v 581 (1091)
-||.+ ++ +.+..+.. .......++...+|+..+++.. .++|...|..+|+.+..+.-.. ..+
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~qi 256 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---PQI 256 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---Cce
Confidence 78743 22 22222222 1112335666778887777765 5569999999999999998876 789
Q ss_pred EEEEEcCC-CCEEEE
Q 001367 582 SVVHFDTA-KDQILA 595 (1091)
Q Consensus 582 ~~v~~~~~-~~~l~~ 595 (1091)
++++|.-. -..+++
T Consensus 257 tsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 257 TSCCFGGKNLDILYV 271 (310)
T ss_pred EEEEecCCCccEEEE
Confidence 99999643 234444
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.5 Score=44.70 Aligned_cols=171 Identities=9% Similarity=0.106 Sum_probs=108.6
Q ss_pred eccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEE
Q 001367 881 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 959 (1091)
Q Consensus 881 l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~ 959 (1091)
+.|-...|.++.|+|+.+.|.+......-.||=-..|......++.... ....+.+.-+|++.++ -.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 3444556999999999999998888777777766666655444443332 2457888899998888 4677888
Q ss_pred EEEcCCcceeeeee--------cCC-ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCccccc
Q 001367 960 IYEAEELTCLKQWF--------PIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV 1030 (1091)
Q Consensus 960 vwd~~~~~~~~~~~--------~~h-~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 1030 (1091)
++.+.......... ..+ +.....++|+|.++.|..+-+-.-+.|+.+..+... +......... ....+
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~~~~~-~~~~~ 230 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHASLDPT-ADRDL 230 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--cccccccCcc-cccce
Confidence 87776553222111 112 566788999999998888888888888877643211 1100111110 01111
Q ss_pred ce---eEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 1031 YP---HAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1031 ~~---~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
+. ..+.|++..+.+|+-+.+++.+...+...
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 11 13567776778888888888887777644
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.57 E-value=3.9 Score=43.32 Aligned_cols=231 Identities=11% Similarity=0.051 Sum_probs=107.4
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce-e
Q 001367 803 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-I 878 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~-~ 878 (1091)
...++.|..+ ..++++..+. .+...+.|+.=..+. .-......+.... ++..++ ++..|.|+.= .+.|+. .
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEEe-CCCCCCee
Confidence 4566777543 4455555553 333333333222221 1122333343333 333333 3444544322 222322 2
Q ss_pred eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeE
Q 001367 879 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 958 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i 958 (1091)
.....-.+.+..+.-++||+++++++.-....-||-.... ....... .. ..|..+.|+||+.+.+++..+.|
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~--~~---~riq~~gf~~~~~lw~~~~Gg~~ 209 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRN--SS---RRIQSMGFSPDGNLWMLARGGQI 209 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE----SS---S-EEEEEE-TTS-EEEEETTTEE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccC--cc---ceehhceecCCCCEEEEeCCcEE
Confidence 3334455778999999999999877666656677765421 1122221 11 36999999999999888888888
Q ss_pred EEEE-cCCcceeee-eec--CCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeE
Q 001367 959 AIYE-AEELTCLKQ-WFP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1034 (1091)
Q Consensus 959 ~vwd-~~~~~~~~~-~~~--~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1034 (1091)
+.=+ ....+.... ..+ ...-.+..++|.+++...|+| ..|.+ +...+.|+.=.+-......+.+ ++.+
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~g-g~G~l-~~S~DgGktW~~~~~~~~~~~n-----~~~i- 281 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVG-GSGTL-LVSTDGGKTWQKDRVGENVPSN-----LYRI- 281 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEE-STT-E-EEESSTTSS-EE-GGGTTSSS--------EE-
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEe-CCccE-EEeCCCCccceECccccCCCCc-----eEEE-
Confidence 8877 222222111 111 113458899999998877765 45544 4566666554444323333333 4433
Q ss_pred EEeCCCCCCeEEEEecCCcEEEE
Q 001367 1035 IAAHPLKPTQFAVGLTNGEVYVI 1057 (1091)
Q Consensus 1035 ~~~~p~d~~~l~~g~~dg~v~~w 1057 (1091)
.|.+ +..-.+-+.+|.|.-|
T Consensus 282 -~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 282 -VFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEE--TTEEEEE-STTEEEEE
T ss_pred -EEcC--CCceEEECCCcEEEEe
Confidence 3433 2455556678887665
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.056 Score=38.55 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.6
Q ss_pred CccEEEEEECCCCCEEEEEECCCEEEEEEee
Q 001367 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 426 (1091)
...|.+++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.037 Score=39.41 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCc
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK 369 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~ 369 (1091)
.+|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus 12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 3799999999998 8899999999999998 5554
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.18 E-value=5.2 Score=48.57 Aligned_cols=203 Identities=12% Similarity=0.101 Sum_probs=116.4
Q ss_pred CCCEEEEEeCCeEEEEEccCceeEEEecCCCCC--------eEEEEEcC---------------CCCcEEEEEeCCCeEE
Q 001367 812 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL 868 (1091)
Q Consensus 812 dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~~~~~la~g~~dg~i~ 868 (1091)
++.+.++..++.|.-.|..+|+.+-++...... .+.+++-. .++..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444788888999999988776532211 12233321 0234777899999999
Q ss_pred EEeccCcceeeeeccccCCeE-------------EEEECC--CCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 001367 869 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR 923 (1091)
Q Consensus 869 iwd~~~~~~~~~l~~h~~~V~-------------~l~~sp--dg~~las~s~----------Dg~i~vwd~~~~~~~~~~ 923 (1091)
-.|..+|+.+..+.. .+.|. .+.-+| .+..++.++. +|.|+-+|.++|+..=..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998866532 22110 111122 1345555542 688999999998753211
Q ss_pred eeecc-------CCCcC--CCCCc-eEEEEcCCCCEEEEE-------------------ecCeEEEEEcCCcceeeeeec
Q 001367 924 SLQTP-------DGVMT--LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP 974 (1091)
Q Consensus 924 ~~~~~-------~~~~~--~~~~i-~~l~fs~dg~~la~~-------------------~d~~i~vwd~~~~~~~~~~~~ 974 (1091)
....+ .+..- ....+ ...++.++...+... ..+.|.-.|.++|+....+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 11100 00000 00011 234555555444431 124577788999998876654
Q ss_pred CC--------ccCEEEEEEee-CCC---EEEEEEcCCcEEEEeCCCCceEEEe
Q 001367 975 IS--------SVPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 975 ~h--------~~~v~~v~fs~-dg~---~l~t~~~dg~v~iwd~~~~~~~~~~ 1015 (1091)
-| .....-+.+.. +|+ .++.++.+|.+.+.|-.+|+.+...
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 33 11111122333 664 7899999999999999999987654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.13 E-value=7.4 Score=43.90 Aligned_cols=122 Identities=17% Similarity=0.294 Sum_probs=76.5
Q ss_pred CCCcEEEEEcCCC----ceEEEEEcCCCcEEEEEcC-----CCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 334 SSSPMSMDFHPVQ----HTLLLVGTNVGDTGLWDVN-----SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 334 ~~~V~~v~fspdg----~~llasg~~dg~i~iWd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
-..|..+.|+|-+ ..|||+- ....|.||.+. +++.+..+.+. +.+..+. --..+.|
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcE---i~e~~pv-----------LpQGCVW 120 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCE---IREPFPV-----------LPQGCVW 120 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeee---ccCCccc-----------CCCcccc
Confidence 3479999999853 3577764 45889999975 34444332222 1111111 1124779
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1091)
+|....|++-.....-.++++..... +....+ ...+.|.|.+|.+||+++.++.|+ .=.-+|||-.
T Consensus 121 HPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~ 186 (671)
T PF15390_consen 121 HPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSA 186 (671)
T ss_pred cCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCc
Confidence 99999998887766556777765432 222233 345679999999999985555444 4467799843
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.072 Score=51.68 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=67.6
Q ss_pred EEEEE-eCCeEEEEEccCceeE-EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecccc-CCeEEE
Q 001367 815 YLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGL 891 (1091)
Q Consensus 815 ~la~~-~dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~l 891 (1091)
-+++| ++|.|.+|...-.... ..+..-...|-++.-.-+++.+..+++.||.|+.|++.-++.+...-.|. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 34444 5899999987622211 11111222333333232256689999999999999999988888877787 566666
Q ss_pred EECCCCCEEEEE--eCCCcEEEEEcCC
Q 001367 892 VFSDALNILVSS--GGDAQIFVWDVDG 916 (1091)
Q Consensus 892 ~~spdg~~las~--s~Dg~i~vwd~~~ 916 (1091)
..+..++.++++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 666667777777 7777788887765
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.87 E-value=5.3 Score=40.89 Aligned_cols=193 Identities=11% Similarity=0.067 Sum_probs=109.0
Q ss_pred cccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC
Q 001367 733 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812 (1091)
Q Consensus 733 ~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 812 (1091)
..-...+.|..+|..+-+.+.-|.-.+ +.+++.+|+......++. ..--..+++..|
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~~---~~FgEGit~~~d 100 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLPP---RYFGEGITILGD 100 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-TT---T--EEEEEEETT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECCc---cccceeEEEECC
Confidence 345667888888887777777664332 234455666555555532 333445666555
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccc-----cCC
Q 001367 813 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKR 887 (1091)
Q Consensus 813 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h-----~~~ 887 (1091)
.-+..+--++...+||..+.+.+.++.- .+.=..++. +++.|+.......++++|..+-+....+.-. -..
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred EEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence 5455555689999999999999988863 345566663 5556666666778999998887665554322 123
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccC-------CCcCCCCCceEEEEcCCCCEEEEE
Q 001367 888 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV 953 (1091)
Q Consensus 888 V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~i~~l~fs~dg~~la~~ 953 (1091)
++-+.+- +|...|=.=....|..-|..+|......-+..+. .......-...+|+.|.+..|.+.
T Consensus 177 LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 177 LNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred cEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 4445554 5655555444555667777777655432222111 111112347899998877766653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.72 E-value=8.1 Score=43.01 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCeeEEEecCCCCEEEEEe------------C-CeEEEEEccC--cee--EEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001367 802 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD 864 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~------------d-g~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~d 864 (1091)
.....+++.++|+++++.. . +.|.+++-.. |+. ...+.........+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4567899999999888752 1 3677776442 322 233433344568899998 77 444 4444
Q ss_pred CeEEEEeccCc-----c--ee-eeecc----ccCCeEEEEECCCCCEEEEEeCC-------------------CcEEEEE
Q 001367 865 STILIYNARSS-----E--VI-SKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD 913 (1091)
Q Consensus 865 g~i~iwd~~~~-----~--~~-~~l~~----h~~~V~~l~~spdg~~las~s~D-------------------g~i~vwd 913 (1091)
...++.+.... + .+ ..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334344321 1 11 22322 23447789999999887765521 3344445
Q ss_pred cCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 914 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
.++++. ..+ ..+.. ....++|+++|+++++
T Consensus 171 pdg~~~---e~~--a~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL---RVV--AHGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE---EEE--ecCcC----CCccceECCCCCEEEE
Confidence 544331 111 12222 3568999999999887
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.68 E-value=14 Score=44.77 Aligned_cols=115 Identities=11% Similarity=-0.034 Sum_probs=73.4
Q ss_pred EEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCC-ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC--CceEEEeec
Q 001367 941 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASN--LEVQCRILS 1017 (1091)
Q Consensus 941 l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~--~~~~~~~~~ 1017 (1091)
.+..|-..++++|....+++||+...+.++.....+ ...|+++.+- +..+++|...-.|.++.... .+++ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa- 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLI-VFA- 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEE-EEe-
Confidence 456677778889999999999998887776655444 5566666654 56788887766666655444 3333 222
Q ss_pred ccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCCCccc
Q 001367 1018 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV 1068 (1091)
Q Consensus 1018 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~~~~ 1068 (1091)
....+.. |..+++. |-..++.+..=|.+.+-+++..-.+-+.
T Consensus 1015 dD~~pR~-----Vt~~~~l----D~~tvagaDrfGNi~~vR~P~d~~e~~~ 1056 (1205)
T KOG1898|consen 1015 DDPVPRH-----VTALELL----DYDTVAGADRFGNIAVVRIPPDVSEEAS 1056 (1205)
T ss_pred CCCccce-----eeEEEEe----cCCceeeccccCcEEEEECCCcchhhhc
Confidence 2222222 3322221 4578999999999999988765544433
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.96 Score=52.50 Aligned_cols=123 Identities=9% Similarity=0.095 Sum_probs=77.5
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec-cccCCeEEEEEC--CCCCEEEEEeCCCcEEEEE
Q 001367 837 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 837 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-~h~~~V~~l~~s--pdg~~las~s~Dg~i~vwd 913 (1091)
++......++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|-.+.|.++.
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3333444555555555 45555555555699999999876432221 356789999984 7999999999999999986
Q ss_pred cCC----Cceeeeeeeecc--CCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEc
Q 001367 914 VDG----WGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 963 (1091)
Q Consensus 914 ~~~----~~~~~~~~~~~~--~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~ 963 (1091)
-.. ........++.. ..+.+ .+|.+..|.++|.+++ +.++++.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence 431 111111122221 22222 3688999999998654 55677888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.1 Score=52.01 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=77.0
Q ss_pred CeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec-CCCcceEEEeecccCCceEEEEEecCCeEEEEecC----
Q 001367 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---- 517 (1091)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---- 517 (1091)
...-+.-|.-++ ..+..+....+.|||...+.....-. ...+.|..+.|...++++.+++.+..+.|.++--.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444555555555 34444445689999998887544332 35788999999999999999999999999998431
Q ss_pred -CCC----cee--eecC-CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 518 -SLG----ARV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 518 -~~~----~~~--~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
... .+. .+.. ..++|....|.++|..++.++. .+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence 111 111 1222 3367889999999988877643 4777774
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.68 Score=49.49 Aligned_cols=158 Identities=9% Similarity=0.084 Sum_probs=97.7
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeE-EEec-CCCC----CeE-EEEEcCCCCcEEEEEeCCCeEEEE-e
Q 001367 800 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 871 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~s~~~~~~la~g~~dg~i~iw-d 871 (1091)
....+..+-..|||+.+..-+..++.++++.+.... +++. ...+ .|+ .+..-. ++.-+.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456778888999999999988899999988754432 1221 1111 122 222233 67777888999988776 5
Q ss_pred ccCc-ce----eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCC
Q 001367 872 ARSS-EV----ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 946 (1091)
Q Consensus 872 ~~~~-~~----~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d 946 (1091)
+..+ .. ++.+.-...++..+.--.+.+-+++-+..|++.++.....+. ...+... ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---lL~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL---LLFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc---eehhhhh------cCcceeeeCcc
Confidence 4432 21 122221223344333333446678888888888876544221 1111111 14668999999
Q ss_pred CCEEEEEecCeEEEEEcCCcc
Q 001367 947 QTRFLLVHETHLAIYEAEELT 967 (1091)
Q Consensus 947 g~~la~~~d~~i~vwd~~~~~ 967 (1091)
+.+|++-..|.++++.+++..
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cchheeecCCceEEEEecCCC
Confidence 999999888999999887544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.30 E-value=5.9 Score=38.94 Aligned_cols=138 Identities=9% Similarity=0.087 Sum_probs=84.6
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc-----cccceEEEEEcCCCCEEEE-EeCCCeEEE
Q 001367 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAKDQILA-AGDDHVIKI 604 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~l~~-~s~dg~i~i 604 (1091)
....-..+|+|++.+ +.....++ .+....+.+..-+.+|+. ....-+.++|+.+.+.++. -+.+-.|.-
T Consensus 110 R~NDgkvdP~Gryy~-GtMad~~~----~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYG-GTMADFGD----DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred ccccCccCCCCceee-eeeccccc----cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 445566789999944 33211111 111222333222333320 0123456788877766655 556777877
Q ss_pred EE--CCCCeeE-----EEEeCC--CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeec
Q 001367 605 WD--MNKVQLL-----TTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN 673 (1091)
Q Consensus 605 wd--~~~~~~~-----~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 673 (1091)
|| ..+|... ..+... .....--.++...+|++.++.-..++|...|..+++.+.++......+++++|.
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 77 5555432 222211 011123456677789999999999999999999999999999999999999995
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.23 E-value=17 Score=44.02 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=65.5
Q ss_pred EEecCCCCEEEEEeCCeEEEEEccCceeEEEecC--CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC-cceeeeecc
Q 001367 807 FALSKNDAYLFSASGGVISLYIVMTFKTILTIMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 883 (1091)
Q Consensus 807 l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~-~~~~~~l~~ 883 (1091)
.|+.|-..++.+|-+..+++||+-..++++.... ....|+.+.+ .+..+++|...-.|.++..+. +..+..+..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 4666777788888899999999988877765432 3456777777 456788887666666554433 233333332
Q ss_pred --ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 884 --HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 884 --h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
-...|+++.+-. -..+|.+..=|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~lD-~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELLD-YDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEec-CCceeeccccCcEEEEECC
Confidence 123466666653 3456656655666555544
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.96 E-value=7.4 Score=39.35 Aligned_cols=197 Identities=12% Similarity=0.118 Sum_probs=129.0
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 923 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~ 923 (1091)
.-..++-+| ||..-.++...|.|--.|..+|+....--+....-..|..-|||...++-+.. .|.-.|-++.+...
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-- 138 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-- 138 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence 345677888 88888888888888888888888766555555566778889999877764433 45555666655332
Q ss_pred eeeccCCCcCCCCCceEEEEcCCCCEEEEEecC----------eEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEE
Q 001367 924 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 993 (1091)
Q Consensus 924 ~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~----------~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~ 993 (1091)
+.....+.. .......|.+.|.+-.++..| .|++|+.. ....-..|+..|||..-+
T Consensus 139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence 333333332 457889999999998885432 35566543 234456788999999888
Q ss_pred EEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCCCcccC
Q 001367 994 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1069 (1091)
Q Consensus 994 t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~~~~~ 1069 (1091)
+.-.+..|...|..++... .+.....+..+ +..+-.+|. +..-++....+.++-+|.+... |.+=
T Consensus 205 aslagnaiaridp~~~~ae-v~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~s--W~ey 269 (353)
T COG4257 205 ASLAGNAIARIDPFAGHAE-VVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVTS--WIEY 269 (353)
T ss_pred EeccccceEEcccccCCcc-eecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCccccc--ceee
Confidence 8777778888887777322 22222222222 112334564 7788888888888888886654 6543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.2 Score=53.49 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=62.9
Q ss_pred ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC----------C--ceEEEeeccc-ccCCCCcccccceeEEEeCCC--C
Q 001367 977 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILSTA-YLRPTTSCLHVYPHAIAAHPL--K 1041 (1091)
Q Consensus 977 ~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~----------~--~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~--d 1041 (1091)
.-.|..|.++++|++|+..|..| |.|-.++. | ...|+..+.. .+-. .+..+....+.|||. .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~--~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT--SNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc--CCCCceEEEEEEcCCCCC
Confidence 45788999999999999888765 55555542 1 2344433221 1111 123345567899995 3
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCcccCC
Q 001367 1042 PTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1070 (1091)
Q Consensus 1042 ~~~l~~g~~dg~v~~w~~~~~~~~~~~~~ 1070 (1091)
+..|++=..|+++++||+.+....|++.+
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 57899999999999999998888888776
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=5.5 Score=44.31 Aligned_cols=147 Identities=12% Similarity=0.176 Sum_probs=88.6
Q ss_pred CeeEEEecCCCCEEEEEeCCeEE-EEEccCcee--EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc---
Q 001367 803 AVPCFALSKNDAYLFSASGGVIS-LYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--- 876 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~dg~i~-iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~--- 876 (1091)
....+..++||.+++.+..|.+. -||- |.. ...-......++.+.+.+ ++.+++++ .+|.+.. ....++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEE 314 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCccc
Confidence 35566788999999999877643 3432 222 111122345789999998 77777655 5666543 344443
Q ss_pred --eeeeecc--ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 877 --VISKLEG--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 877 --~~~~l~~--h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
....... -...++++.|.+++..++ ++..|.+.... +.++ ..+........+.....+.|.++++.+++
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~-----tW~~~~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGK-----SWKRDKGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCc-----ceeEccccCCCCcceeEEEEcCCCceEEE
Confidence 1222221 123589999998877655 56778666654 3322 11111111111235789999999999999
Q ss_pred EecCeEEEE
Q 001367 953 VHETHLAIY 961 (1091)
Q Consensus 953 ~~d~~i~vw 961 (1091)
+.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 999987665
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.14 Score=59.32 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=83.5
Q ss_pred ecccCCCCcEEEEEc----CCCceEEEEEcCCCcEEEEEcC--CCCceeeeceeEEeccccccceeeeeecCCCccEEEE
Q 001367 329 TLIEGSSSPMSMDFH----PVQHTLLLVGTNVGDTGLWDVN--SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fs----pdg~~llasg~~dg~i~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 402 (1091)
.++|..++|-.++|- |.+. . .-|...||++. .|+......+. +...-...+.-+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~-~-----~vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR-R-----LVGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLV 186 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH-H-----HhhhhheeehHhhccccccceEEe--------------ecCcCCCCccee
Confidence 345777788888883 4443 1 22778899875 45444322221 122233445556
Q ss_pred EECC---CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEE-----------cCCCCceEEEEeeCCCcEE
Q 001367 403 VWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-----------SAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 403 ~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-----------s~d~~~~~l~s~~~d~~i~ 468 (1091)
.|.| +..++..+-.+++|++..+.+... . .+.+|...+..++| ||||+ .++.+..||.++
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVG 260 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccc
Confidence 6665 667777777788888877765432 1 24568777766654 89999 899999999888
Q ss_pred EEeCC-----CCceeEEecCCC
Q 001367 469 VWDAV-----TGSRTYSFEGHG 485 (1091)
Q Consensus 469 iwd~~-----~~~~~~~~~~~~ 485 (1091)
.|.+- .-+|++.++.|+
T Consensus 261 f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCC
Confidence 88653 335667777777
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.19 Score=48.88 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=57.1
Q ss_pred EEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE-EEEECCCCCEEEEEECCCEEEEEEeeCC
Q 001367 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGVAYSKHIVQLYAYHGG 428 (1091)
Q Consensus 350 lasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~las~~~d~~i~iwd~~~~ 428 (1091)
+++|+.+|.|.+|+...-...... ...-...|. -+.--.++.+..+++.+|.|+.|++.-+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDR------------------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred EEeecccceEEEecCCccchHHHh------------------hhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 588999999999998622111100 111112232 2333346668888999999999999877
Q ss_pred cccceeEEEeccc-cCeeEEEEcCCCCceEEEEe--eCCCcEEEEeCC
Q 001367 429 SDARQQLEIDAHV-GNVNDLAFSAPCKQISVITC--GDDKTIKVWDAV 473 (1091)
Q Consensus 429 ~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~--~~d~~i~iwd~~ 473 (1091)
+.+. ....|. .++.....+..++ .++.+ |.|..++.|++.
T Consensus 135 k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 135 KVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchh
Confidence 5443 233455 3444444444444 33333 455555555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.64 E-value=5.4 Score=46.21 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=97.2
Q ss_pred eEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee--e--ccccCCeEEEEECCCCC
Q 001367 823 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALN 898 (1091)
Q Consensus 823 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~--l--~~h~~~V~~l~~spdg~ 898 (1091)
.|+||++. |..+.++.-..+.+..+.|+. +. -|++...+|++++|++.. +.+.. . +.....|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 37888754 666655544445888999996 55 555678999999999863 33222 1 22334466666666664
Q ss_pred EEEEEeCCCcEE-EEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEE--EEEec--CeEEEEEcCCcce-eeee
Q 001367 899 ILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF--LLVHE--THLAIYEAEELTC-LKQW 972 (1091)
Q Consensus 899 ~las~s~Dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~l--a~~~d--~~i~vwd~~~~~~-~~~~ 972 (1091)
.+.+ .+|.+. +-+.+... ...+....+... .-.+-+.-+++... ...-+ --..++..+.+.. ...+
T Consensus 141 avlt--~~g~v~~i~~~~~~~---~~~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPK---LRKMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEe--cCCcEEEEcCCCcch---hhhCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 4444 344443 33333211 111111111111 11233333332211 11111 0111222221111 1111
Q ss_pred ecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 973 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 973 ~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
..+ ...+..+..||++++|+--..+|.|.+-+.+..+..|.+.
T Consensus 213 ~~~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 SWP-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCC-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 111 4578889999999999999999999999998888877766
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=3.5 Score=48.92 Aligned_cols=153 Identities=8% Similarity=-0.024 Sum_probs=72.4
Q ss_pred CceEEEEEecC-----CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC--CceEEEEEecCCceeeEE
Q 001367 498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 498 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~ 570 (1091)
++.+.+.|+.+ ..+..||..+..-......+.......+..-+++..+.||.... .-..+..||..+.+....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45667777765 24667776654322111111111111112235666666653221 125688899887654332
Q ss_pred EecccccccceEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
-.... ..... +++ ..++..++.|+.+ ..+.+||..+.+....-...........+. -+++.++.|+.
T Consensus 422 ~~~p~-~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCC
Confidence 21111 01111 222 2245555556532 238889988776544322211111112222 26777777765
Q ss_pred C-----CeEEEEECCCCC
Q 001367 643 E-----NRIKILETPESN 655 (1091)
Q Consensus 643 d-----g~i~iwd~~~~~ 655 (1091)
+ +.+.+||..+..
T Consensus 497 ~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcccceeEEEeCCCCE
Confidence 4 467888877663
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=2.4 Score=50.22 Aligned_cols=188 Identities=11% Similarity=0.027 Sum_probs=93.8
Q ss_pred CCCCEEEEEe-C------CeEEEEEccCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEeccCcc
Q 001367 811 KNDAYLFSAS-G------GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE 876 (1091)
Q Consensus 811 ~dg~~la~~~-d------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~i~iwd~~~~~ 876 (1091)
.++..++.|+ + ..+..||..+.+-... +..+......+++ ++++.+.|+.+ ..+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3555555554 2 2477888776554322 1111112222222 67788888865 357788887754
Q ss_pred ee--eeeccccCCeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCC
Q 001367 877 VI--SKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 877 ~~--~~l~~h~~~V~~l~~spdg~~las~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 948 (1091)
-. ..+........ ++ .-+++..+.||.+ ..+..||..+++......+ +... ....+...+++
T Consensus 370 W~~~~~lp~~r~~~~-~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r------~~~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYNPC-VV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISH------YGGCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCccce-EE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--Cccc------cCceEEEECCE
Confidence 32 22221111111 12 2366777777732 3578899887553321111 1111 11122334566
Q ss_pred EEEEEe-c--------CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceE
Q 001367 949 RFLLVH-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1012 (1091)
Q Consensus 949 ~la~~~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~ 1012 (1091)
..+.|. + ..+.+||..+.+....-...... ...-....+++.++.|+.+ ..|.+||..+....
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 655542 1 23889998877654321111111 1111122367777777654 46788888776543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.20 E-value=3.8 Score=40.21 Aligned_cols=157 Identities=11% Similarity=0.122 Sum_probs=85.3
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe----cC---eEEEE
Q 001367 889 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ET---HLAIY 961 (1091)
Q Consensus 889 ~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~----d~---~i~vw 961 (1091)
..++-++. ..|..+.....|.+|++...++.....+.+. +.|..+.++..|++|++-. .. .+++|
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 33444442 3443345667799999996554443334433 2588999999999999931 22 46665
Q ss_pred ---EcC--CcceeeeeecCC---------------------ccCEEEEEEee-CCCEEEEEEcCCcEEEEeCCCCce-EE
Q 001367 962 ---EAE--ELTCLKQWFPIS---------------------SVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEV-QC 1013 (1091)
Q Consensus 962 ---d~~--~~~~~~~~~~~h---------------------~~~v~~v~fs~-dg~~l~t~~~dg~v~iwd~~~~~~-~~ 1013 (1091)
+.. ....++....|| ..++.+++-.| .|+ |++|+ ++++.+|.+..... ..
T Consensus 93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~~~~ 170 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTIQSE 170 (215)
T ss_pred EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEEecc
Confidence 222 122222222232 34556667666 455 44454 55899998776544 22
Q ss_pred EeecccccCCC-CcccccceeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 1014 RILSTAYLRPT-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1014 ~~~~~~~~~~~-~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
++....+...- .|...+.+..+++. +.++|.. .+-.++++.+
T Consensus 171 ~~~~lDFe~~l~~~~~~~~p~~v~ic---~~yiA~~-s~~ev~Vlkl 213 (215)
T PF14761_consen 171 KFSFLDFERSLIDHIDNFKPTQVAIC---EGYIAVM-SDLEVLVLKL 213 (215)
T ss_pred cccEEechhhhhheecCceEEEEEEE---eeEEEEe-cCCEEEEEEE
Confidence 11111111110 12344556566665 3555554 4667777765
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=92.91 E-value=31 Score=42.75 Aligned_cols=174 Identities=15% Similarity=0.149 Sum_probs=97.6
Q ss_pred CCCCeeEEEec---C----CCCEEEEEeCCeEEEEEccCc---------------eeEEEecC---CCCCeEEEEEcCCC
Q 001367 800 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD 854 (1091)
Q Consensus 800 ~~~~v~~l~~s---~----dg~~la~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~~ 854 (1091)
...+|..|+|+ . ..++|++-....+.|+...-. .++.++.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 45688888887 2 235777777777777762211 11222221 12244566777666
Q ss_pred CcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCC
Q 001367 855 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 934 (1091)
Q Consensus 855 ~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 934 (1091)
.+.||+.+..|...||++..+... +. .... +.....|.| +.|... +
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~~~----------~~~~~~gsi-~~d~~e--------------~--- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KS-SNLR----------LSRNISGSI-IFDPEE--------------L--- 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CC-ccee----------eccCCCccc-cCCCcc--------------c---
Confidence 667777777777777776211100 00 0111 111112222 122111 0
Q ss_pred CCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceee-eeecCCccCEEEEEEeeCCC-EEEEEEcCCcEEEEeCCCC
Q 001367 935 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 935 ~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~v~fs~dg~-~l~t~~~dg~v~iwd~~~~ 1009 (1091)
..-..+.|.++-..|+++....+.++|+.+..... .........|..+.-+++.. +++.- ....|...++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 12457889999999999999999999999876633 22233467888888888732 22222 2356877787774
|
These proteins are found in fungi. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.8 Score=46.69 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCCcEEEEEe-----------CCC-eEEEEeccC--cc--eeeeeccccCCeEEEEECCCCCEEEEEeCC
Q 001367 843 PTATSLAFNPHDNNVIAIGM-----------DDS-TILIYNARS--SE--VISKLEGHSKRVTGLVFSDALNILVSSGGD 906 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~-----------~dg-~i~iwd~~~--~~--~~~~l~~h~~~V~~l~~spdg~~las~s~D 906 (1091)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++| +++ ++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4567889998 787776542 223 777776543 33 223443334456889999998 555 3444
Q ss_pred CcEEEEEcCCCc-e--eeeeeeeccCCC-cCCCCCceEEEEcCCCCEEEE-Eec-------------------CeEEEEE
Q 001367 907 AQIFVWDVDGWG-I--QTCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLL-VHE-------------------THLAIYE 962 (1091)
Q Consensus 907 g~i~vwd~~~~~-~--~~~~~~~~~~~~-~~~~~~i~~l~fs~dg~~la~-~~d-------------------~~i~vwd 962 (1091)
...++.|.+... . .....+..+... .........++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 433343543321 1 111223323221 000124678999999988776 421 3455556
Q ss_pred cCCcceeeeeecCCccCEEEEEEeeCCCEEEEEE
Q 001367 963 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 963 ~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
..+++. ..+..+ -.....++|+++|+++++-.
T Consensus 171 pdg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEecC-cCCCccceECCCCCEEEEcc
Confidence 554432 233333 34567899999999877644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=18 Score=39.61 Aligned_cols=153 Identities=18% Similarity=0.152 Sum_probs=92.3
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceee
Q 001367 801 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 879 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~ 879 (1091)
...+..+.+.|++.+++++..|.+..-.-..++.-.. .......++++++.+ +++.+++| ..|.+++=..+.|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4567889999999998888888655321111221111 223446789999999 77777655 46766543344443222
Q ss_pred eecc----ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEec
Q 001367 880 KLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 955 (1091)
Q Consensus 880 ~l~~----h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d 955 (1091)
.... -...+.++++.++++.++ ++.+|.|. ...+.++. ...+....+.. .....+.|..+++.++++..
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~t--W~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKT--WEKDPVGEEVP---SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCC--CeECCcCCCCC---cceEEEEEeCCCceEEECCC
Confidence 1111 123578899999887665 55677554 44444331 11111111211 25778888889999999999
Q ss_pred CeEEEEE
Q 001367 956 THLAIYE 962 (1091)
Q Consensus 956 ~~i~vwd 962 (1091)
|.|..|+
T Consensus 323 G~il~~~ 329 (334)
T PRK13684 323 GVLLRYV 329 (334)
T ss_pred ceEEEec
Confidence 9988776
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.66 E-value=29 Score=41.94 Aligned_cols=94 Identities=9% Similarity=-0.005 Sum_probs=54.6
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCeEEEEEccC-ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCccee
Q 001367 800 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 878 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~ 878 (1091)
....|..+.++|+|+++|..+...|.|..+.. +.....+.+....|. .+.+.+... .
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~--------------------Crt~~v~~~--~ 140 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEIN--------------------CRTVPVDER--F 140 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCccee--------------------EEEEEechh--h
Confidence 45688999999999999998876666665532 110111111111111 112222110 0
Q ss_pred eeeccccCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCC
Q 001367 879 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spd---g~~las~s~Dg~i~vwd~~~ 916 (1091)
. ...+...|..+.|+|. +..|+.-..|+++++||+..
T Consensus 141 ~-~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 141 F-TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred c-cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 0 1123456777888875 47788888888888888865
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=5.1 Score=46.44 Aligned_cols=184 Identities=11% Similarity=-0.009 Sum_probs=91.9
Q ss_pred CCCEEEEEe-C-----CeEEEEEccCceeEE--EecCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeccCcce--ee
Q 001367 812 NDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEV--IS 879 (1091)
Q Consensus 812 dg~~la~~~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~la~g~~dg--~i~iwd~~~~~~--~~ 879 (1091)
++..+++|+ + ..+..||..+.+-.. .+.........++ - ++.+.++|+.++ .+..||..+++- +.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 445555554 2 347778877654322 2221111222222 3 677888888643 678888766532 22
Q ss_pred eeccccCCeEEEEECCCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecC
Q 001367 880 KLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 956 (1091)
Q Consensus 880 ~l~~h~~~V~~l~~spdg~~las~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~ 956 (1091)
.+.........+ .-+|+..+.||.++ .+..||..+..-.....+.... -...+..-+|+..+.| |
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--C
Confidence 332111112222 23678888887654 4678888775533211111111 1112224456666655 4
Q ss_pred eEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCce
Q 001367 957 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1011 (1091)
Q Consensus 957 ~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~ 1011 (1091)
.+.+||..+.+....-...+. +...-+..-+|+..+.||.+ .+|..||..+++.
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYP-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCC-ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 577899887765432111111 11112223467777777754 2455666655543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.17 E-value=7.1 Score=37.74 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=61.4
Q ss_pred CCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeE--EEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccC
Q 001367 812 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 886 (1091)
Q Consensus 812 dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~ 886 (1091)
+|.++.+.+ ...|++||+.+|+.+..-.-....+. .+.-. +..+.+-.-.+|....+|.++.+++..+. ..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 556666655 36799999999988766543322221 11111 23344445578899999999988877665 334
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001367 887 RVTGLVFSDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 887 ~V~~l~~spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
.-+.++ .|++-|+.++...+++.-|-++
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHH
Confidence 445554 3555666666566676666655
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.91 E-value=20 Score=38.18 Aligned_cols=188 Identities=10% Similarity=0.054 Sum_probs=102.4
Q ss_pred eeEEEecCCCCEEEEEe-----C--------CeEEEEEccCceeEEEecCC------CCCeEEEEEcCCCC----cEEEE
Q 001367 804 VPCFALSKNDAYLFSAS-----G--------GVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAI 860 (1091)
Q Consensus 804 v~~l~~s~dg~~la~~~-----d--------g~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~----~~la~ 860 (1091)
|..+.+.+++++-+.-. . -+|.+||+.+.+.++++.-+ ......+++...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 45566666666555422 1 26889999999988876533 34567777765222 23333
Q ss_pred Ee-CCCeEEEEeccCcceeeeeccc-------------------cCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCC
Q 001367 861 GM-DDSTILIYNARSSEVISKLEGH-------------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGW 917 (1091)
Q Consensus 861 g~-~dg~i~iwd~~~~~~~~~l~~h-------------------~~~V~~l~~sp---dg~~las~s~Dg~i~vwd~~~~ 917 (1091)
.. ..+-|.++|+.+++.-+.+..+ .+.+..++.+| ||++|.-..-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 33 3458999999988754444322 13366677765 666766555443 345554432
Q ss_pred ceeee-----e----eeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcc---eeeeee-cCC-ccCEEE
Q 001367 918 GIQTC-----R----SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWF-PIS-SVPISQ 982 (1091)
Q Consensus 918 ~~~~~-----~----~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~---~~~~~~-~~h-~~~v~~ 982 (1091)
..... . .++.+ |... .....++++++|.+..+ ...+.|..|+..+.- ....+. ... -..+..
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 11110 0 01111 0000 13457899999998888 577899999987621 111111 222 346788
Q ss_pred EEEee--CCCEEEEE
Q 001367 983 ATFSC--DCRMVFTS 995 (1091)
Q Consensus 983 v~fs~--dg~~l~t~ 995 (1091)
+.+.+ +|.+.+.+
T Consensus 239 ~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEE-T--TS-EEEEE
T ss_pred eeeccccCceEEEEE
Confidence 88888 77766654
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.52 E-value=6.1 Score=42.76 Aligned_cols=142 Identities=8% Similarity=0.040 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeccCc--c-eeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001367 845 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS--E-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 921 (1091)
Q Consensus 845 i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~--~-~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~ 921 (1091)
.+.+-|.. .++.|+ +...|.+.=|-+... . ++..-....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 35566654 333333 333444555544321 1 222222356799999999999999999999999999985533211
Q ss_pred eeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEE
Q 001367 922 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 993 (1091)
Q Consensus 922 ~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~ 993 (1091)
. ........ ...|....|+.. .-+|.-.+..+.+|.....+.-......|...|.-..|.++.+.++
T Consensus 103 ~-~~~~ck~k---~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 103 E-YTQECKTK---NANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred H-HHHHhccC---cceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 1 11111111 124788888877 6677666777777776554433333456777888888888877544
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.33 E-value=16 Score=45.58 Aligned_cols=151 Identities=18% Similarity=0.186 Sum_probs=95.3
Q ss_pred eCCCeEEEEeccCcceeeeeccccCCeEEEEE--------CCCCCEEEEEeCCCcEEEEEcCCCceeeeeee-eccCCCc
Q 001367 862 MDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCRSL-QTPDGVM 932 (1091)
Q Consensus 862 ~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~--------spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~ 932 (1091)
+-|+.+.+|+.+++.....+.+-...|..+.. -|.=++|...+.--.|.++-+.-.+....... ...-...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45788999999998777777777777777654 23334555555555577776543332111110 0000000
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCeEE--EEEcCCcc----e----------------eeeeecCCccCEEEEEEeeCCC
Q 001367 933 TLAPSETHIQFHKDQTRFLLVHETHLA--IYEAEELT----C----------------LKQWFPISSVPISQATFSCDCR 990 (1091)
Q Consensus 933 ~~~~~i~~l~fs~dg~~la~~~d~~i~--vwd~~~~~----~----------------~~~~~~~h~~~v~~v~fs~dg~ 990 (1091)
.....|.++....+|+.+.+|.||.|+ +|....|- | +.++...+..+|..++......
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 111358899999999999999998544 33333221 1 0111224567899999988888
Q ss_pred EEEEEEcCCcEEEEeCCC-CceE
Q 001367 991 MVFTSFVDGTLSIHEASN-LEVQ 1012 (1091)
Q Consensus 991 ~l~t~~~dg~v~iwd~~~-~~~~ 1012 (1091)
.+.+-++.|+|++|++.. |...
T Consensus 256 IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred eeeeeccCceEEEEEccCCCccc
Confidence 899999999999999987 4433
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.25 Score=57.22 Aligned_cols=178 Identities=16% Similarity=0.164 Sum_probs=98.9
Q ss_pred CeEEEEEcc--CceeEEEe-----cCCCCC---eEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEE
Q 001367 822 GVISLYIVM--TFKTILTI-----MPPSPT---ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 891 (1091)
Q Consensus 822 g~i~iwd~~--~~~~~~~~-----~~~~~~---i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l 891 (1091)
|.+.+||+. .|+....+ ...... |..+-|-+ +..++..+..++.|++....+... ..+.+|...++.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 677888875 34433222 112223 33333444 556777888889998887765433 4556687766665
Q ss_pred E-----------ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC-------C--EEE
Q 001367 892 V-----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-------T--RFL 951 (1091)
Q Consensus 892 ~-----------~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg-------~--~la 951 (1091)
+ .||||+.+|.++.||.++.|.+.-......+++..-+.|.. .+-.|.-|...- . +++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEE
Confidence 4 58999999999999999999875433233344444444432 122222243322 2 233
Q ss_pred EEec--CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCC------------EEEEEEcCCcEEEEeCC
Q 001367 952 LVHE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR------------MVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 952 ~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~------------~l~t~~~dg~v~iwd~~ 1007 (1091)
++.| ..+++|.....+|+..+. ...|..+. -+||. .+++-+-|+.|.+|.-.
T Consensus 309 tttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred ecccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 3433 468888877777763322 12333333 22332 13345567788888533
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.18 E-value=6.2 Score=46.55 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=91.4
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEE
Q 001367 813 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 892 (1091)
Q Consensus 813 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~ 892 (1091)
..+++++..+.|.||+........ ...++..+...| .. +...|+.+..|. ..|. |+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 788889999999999976432211 001111222222 11 122333332222 1121 33332
Q ss_pred EC--CCCCEEEEEeCCCcEEEEEcCCCc-----e----e--eeeeeeccCCCcCCCCCceEEEEc--CCCCEEEEEecC-
Q 001367 893 FS--DALNILVSSGGDAQIFVWDVDGWG-----I----Q--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET- 956 (1091)
Q Consensus 893 ~s--pdg~~las~s~Dg~i~vwd~~~~~-----~----~--~~~~~~~~~~~~~~~~~i~~l~fs--~dg~~la~~~d~- 956 (1091)
.. -+...|+.+.+||.|.+|.+++-. . . ..+..-.+.-+.......+.+++. ...++||+++++
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 234567777788888888653200 0 0 000000001111111357889998 888899987654
Q ss_pred eEEEEEcCC--cceeeeeecCCccCEEEEEEeeCC---C---EEEEEEcCCcEEEEeC
Q 001367 957 HLAIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 957 ~i~vwd~~~--~~~~~~~~~~h~~~v~~v~fs~dg---~---~l~t~~~dg~v~iwd~ 1006 (1091)
.|.||-... .+....-...|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 455554332 222221122357789999998754 2 7888899999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.15 E-value=20 Score=41.89 Aligned_cols=163 Identities=11% Similarity=0.131 Sum_probs=78.6
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCccccee-EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE-eCCCC
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW-DAVTG 475 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw-d~~~~ 475 (1091)
.+..+.|+.+..+| +...+|+++||++-... .... .-.......|..+.|..+|- .+.+. +|.+.+- +.+.
T Consensus 85 ~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~- 157 (829)
T KOG2280|consen 85 ELIGMGWSDDEELI-CVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEE- 157 (829)
T ss_pred CeeeecccCCceEE-EEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCc-
Confidence 88899999776555 55699999999987532 2110 00112233466666666553 33333 3444433 3222
Q ss_pred ceeEEecC-CCcceEEEeecccCC---ceEEEEEe-cCCeEEEEecCCC-CceeeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 476 SRTYSFEG-HGAPVYSLCPHAKEN---IHFIFSIS-VDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 476 ~~~~~~~~-~~~~v~~~~~~~~~~---~~~l~s~~-~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
..++++.. ........+|....+ ...++-.. ..+ ..++-.+.. .....+......+..+..||+.++|+.-..
T Consensus 158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec
Confidence 12223221 111111112211111 11111111 000 011111111 112223333457888999999999988765
Q ss_pred CCCCceEEEEEecCCceeeEEEe
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
.|.|.+-+....+....+.
T Consensus 237 ----~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 237 ----TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ----CCcEEEEecchhhhhhccC
Confidence 5557777776666555554
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=91.12 E-value=13 Score=36.73 Aligned_cols=146 Identities=12% Similarity=0.141 Sum_probs=85.3
Q ss_pred cEEEEEeCCCeEEEEeccC--cceeeeeccccCCeEEEEECCCCCEEEEEeCCC------cEEE---EEcCCCceeeeee
Q 001367 856 NVIAIGMDDSTILIYNARS--SEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------QIFV---WDVDGWGIQTCRS 924 (1091)
Q Consensus 856 ~~la~g~~dg~i~iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg------~i~v---wd~~~~~~~~~~~ 924 (1091)
..|..+...+.|.+|++.+ .+.+.++..- +.|..++++..|++|+|--.+. .+|+ |+....+... ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~-v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP-VR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc-EE
Confidence 4555556677899999983 3556666643 7899999999999999864322 4555 3433111000 00
Q ss_pred eeccCCCc------------------CCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcce-ee-----ee----ecCC
Q 001367 925 LQTPDGVM------------------TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-LK-----QW----FPIS 976 (1091)
Q Consensus 925 ~~~~~~~~------------------~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~-~~-----~~----~~~h 976 (1091)
. ..-||. +.+..+.+++.-|-..-|++|.++.+.+|.+..... .. .+ ..-|
T Consensus 107 v-RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 V-RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred E-EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 0 001100 011356788888877778888899999998764433 11 11 1111
Q ss_pred -ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 977 -SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 977 -~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
+-....++|. +.|+|..+ +-.+++..+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 2334556655 45777664 4567777653
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.12 Score=55.69 Aligned_cols=241 Identities=16% Similarity=0.126 Sum_probs=139.0
Q ss_pred EEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEE
Q 001367 738 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 817 (1091)
Q Consensus 738 ~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 817 (1091)
...|-+.+..++.++.+..+..||-.... .... ........+++..+|..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence 45566777778888888777777732211 1111 1334455677777777666
Q ss_pred EEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECC
Q 001367 818 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 895 (1091)
Q Consensus 818 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp 895 (1091)
... .+.+.+||+.+....+.-.+....-.-+.|++ +...++.|...|.+.||+..+.+.+...-.|..+++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 654 58899999976433221111222222378999 899999999999999999988777666666999999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCC---ceEEEEcCCCCEEEEEecCeEEEE----EcCCcce
Q 001367 896 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS---ETHIQFHKDQTRFLLVHETHLAIY----EAEELTC 968 (1091)
Q Consensus 896 dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---i~~l~fs~dg~~la~~~d~~i~vw----d~~~~~~ 968 (1091)
.+ +.+.++.|..+.+-...+..... ....+... ... ...=.|..-|..+...-.+.+.+. .-..+..
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta~l----tevggepd-nm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pv 243 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETASL----TEVGGEPD-NMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPV 243 (615)
T ss_pred cc-eeeecCcHHHHHHhhhccceeee----eeccCccc-hhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCcc
Confidence 75 55667777766554444322111 11111111 000 111123334444444322222211 1111111
Q ss_pred eeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEe
Q 001367 969 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 969 ~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~ 1015 (1091)
-.+ +....+.+.++.|--||..+. +..-|.|..-.+.++++...+
T Consensus 244 al~-fq~~~gni~cyrwylDg~i~i-gf~ag~iV~iS~h~aeLgaef 288 (615)
T KOG2247|consen 244 ALQ-FQEKYGNIHCYRWYLDGYILI-GFDAGYIVSISAHNAELGAEF 288 (615)
T ss_pred ceE-eeecCCceeEEEEeccccccc-cccceeEEEEeccchHHHHHH
Confidence 112 222366788888888886443 656677777777777765443
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=91.06 E-value=30 Score=38.66 Aligned_cols=197 Identities=16% Similarity=0.131 Sum_probs=101.7
Q ss_pred EEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc-ceEEE
Q 001367 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVYSL 491 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~ 491 (1091)
++..+|.|.-.|..++..+-..... +....+..-.+..+|+ ++.++.++.+...|..+|+.+........ .+..-
T Consensus 73 ~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 73 VGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred EecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 3356666776777766532211111 1011222233333776 77788899999999889999888765551 11111
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC---CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
.+ ..+ ..+...+.++.+...|..++.......... ..+..-....++. ++.+..+ . ++.+.-.|..+|...
T Consensus 149 ~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G~~~ 222 (370)
T COG1520 149 PV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDGTLK 222 (370)
T ss_pred cE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCCcEe
Confidence 11 112 244444467887777777777666543322 1111111122333 3333221 1 335777777777766
Q ss_pred EEEecccccc-cceEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001367 569 RTYQGLQLQH-NSVSVVHFDT-----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 569 ~~~~~~~~~~-~~v~~v~~~~-----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1091)
-......... ..+....... .+..++.++.++.+...|..+++.+-.....
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 5533221000 0110000000 1223456777888999999999998887754
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=90.89 E-value=22 Score=36.94 Aligned_cols=207 Identities=13% Similarity=0.096 Sum_probs=116.8
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEEcc------Cc-eeEEEecC-----CCCCeEEEEEcCCCCcE------------
Q 001367 803 AVPCFALSKNDAYLFSAS-GGVISLYIVM------TF-KTILTIMP-----PSPTATSLAFNPHDNNV------------ 857 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~-dg~i~iwd~~------~~-~~~~~~~~-----~~~~i~~l~~s~~~~~~------------ 857 (1091)
....++++|.+.+.++.. .+...+||.. .. ..+-++.. .....+.+.|+. ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 456899999998777765 4889999986 11 22333332 223567788775 2222
Q ss_pred EEEEeCCCeEEEEeccCcce-----eeeec-cccCCeE-EEEECCC--CCEEE-EEeCCCcEEEEEcCCCceeeeeeee-
Q 001367 858 IAIGMDDSTILIYNARSSEV-----ISKLE-GHSKRVT-GLVFSDA--LNILV-SSGGDAQIFVWDVDGWGIQTCRSLQ- 926 (1091)
Q Consensus 858 la~g~~dg~i~iwd~~~~~~-----~~~l~-~h~~~V~-~l~~spd--g~~la-s~s~Dg~i~vwd~~~~~~~~~~~~~- 926 (1091)
++.+++||+|.=|...-+.. ...+. ...+.|+ .+++... +.+|. +--..++|.|+|-.-......-...
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 45678999999998543222 11222 1123343 4555432 44444 4446788999876542211000000
Q ss_pred --ccCCCcCCCCCceEEEEcCCCCEEEE-E-------------ecCeEEEEEcCCcceeeeeec-CCccCEEEEEEee--
Q 001367 927 --TPDGVMTLAPSETHIQFHKDQTRFLL-V-------------HETHLAIYEAEELTCLKQWFP-ISSVPISQATFSC-- 987 (1091)
Q Consensus 927 --~~~~~~~~~~~i~~l~fs~dg~~la~-~-------------~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~v~fs~-- 987 (1091)
.+.+..+ -.|.. -.+++.++ + .-|.|-+||.. |..++++.. +.-..-+.|+..|
T Consensus 183 P~iPagyAP--FnIqn----ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 183 PALPAGYAP--FNVQN----LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCCCCCCCC--cceEE----ECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh
Confidence 0111110 00111 02233332 1 23579999975 666666532 2234456677755
Q ss_pred ----CCCEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 988 ----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 988 ----dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
.|.+|+---.||+|..+|..+|+.+..+..
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 578888777899999999999998877663
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.82 E-value=3.9 Score=44.94 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=67.0
Q ss_pred ccCEEEEEEeeCCCEEEEEEcCCcEEEEe---------CCCCc--eEEEeeccc-ccCCCCcccccceeEEEeCCCC--C
Q 001367 977 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTA-YLRPTTSCLHVYPHAIAAHPLK--P 1042 (1091)
Q Consensus 977 ~~~v~~v~fs~dg~~l~t~~~dg~v~iwd---------~~~~~--~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~d--~ 1042 (1091)
.-.|..+..++.|..++-+|.+|.+.++= ++.|+ ..|+..+.. .+- ..+..+.-.-++|||+- .
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f--tss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF--TSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee--ccCCceeeeeccccCCccCC
Confidence 44677888899999999999998654432 23332 233332111 111 11344555678899953 4
Q ss_pred CeEEEEecCCcEEEEecCCCCCCcccCCCCccccCCC
Q 001367 1043 TQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQP 1079 (1091)
Q Consensus 1043 ~~l~~g~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~ 1079 (1091)
..|+.-..|+.+++|++++.-.-|..+++..+.+.-.
T Consensus 181 ~hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~ 217 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNV 217 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhhccCCCcCCCCccc
Confidence 6788888999999999999888888887766555433
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.73 E-value=2.7 Score=50.72 Aligned_cols=147 Identities=12% Similarity=0.041 Sum_probs=89.0
Q ss_pred CeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-----EEecCC----C--cceEEEeecccCCceEEEEEecCCeE
Q 001367 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEGH----G--APVYSLCPHAKENIHFIFSISVDGKI 511 (1091)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~----~--~~v~~~~~~~~~~~~~l~s~~~dg~i 511 (1091)
+|..+...+|++...++..+.+-.|..||+++-..- .-|..| . ....++.|.|... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566777778877545556666668899998753211 111111 1 2233444544432 245666778888
Q ss_pred EEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccccc-ccceEEEEEcCCC
Q 001367 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAK 590 (1091)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~ 590 (1091)
++..+........--.-....++++|+|.|+.++.+-. .+++.-|-.. .+....+...... ...|.+|+|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 87766544333333334457889999999999999865 5567666543 3333444333221 3679999998877
Q ss_pred CEEEE
Q 001367 591 DQILA 595 (1091)
Q Consensus 591 ~~l~~ 595 (1091)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 77766
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.69 E-value=34 Score=38.71 Aligned_cols=354 Identities=15% Similarity=0.060 Sum_probs=0.0
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC-ccEEEEEECCCCCEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~ 414 (1091)
.|.++.|.-.|. +-.|+.|| +..+|..+|+.+.. ..... .+|..+.-+-.| .|.+|
T Consensus 166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql-------------------~s~~~dk~I~al~~d~qg-~LWVG 222 (671)
T COG3292 166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQL-------------------ASPPLDKAINALIADVQG-RLWVG 222 (671)
T ss_pred cceeeeeeccCc--EEEecCCc-ceEEccccceEEEc-------------------CCCcchhhHHHHHHHhcC-cEEEE
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
+.+| |++.+.++.+.... -..-..+.|..+.-..+|. +-.|+..|..+.--.+.+-.....+.|...-....+.
T Consensus 223 TdqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 223 TDQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLW 296 (671)
T ss_pred eccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCcccccccee
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC---CCCEEEEEecCCCCceEEEEEecCCceeeEEE
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1091)
-+.+| -+-.++.+|.+++-+-+-..........+..+...+..| +.......+ .+.+.+-+-.+|..++..
T Consensus 297 ~D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns-----~g~L~van~stG~~v~sv 370 (671)
T COG3292 297 LDTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS-----IGELMVANGSTGELVRSV 370 (671)
T ss_pred eccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc-----cceEEEecCCCCcEEEEe
Q ss_pred ecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEE--
Q 001367 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL-- 649 (1091)
Q Consensus 572 ~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw-- 649 (1091)
.... ...|+.+++.. +..+-.|+...-+..|+.++.-...........+.|..+.-.|+++ |..|+.+|.++.=
T Consensus 371 ~q~R--g~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~~pe 446 (671)
T COG3292 371 HQLR--GMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKRDPE 446 (671)
T ss_pred eecc--ccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEecCcc
Q ss_pred --ECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeec
Q 001367 650 --ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 727 (1091)
Q Consensus 650 --d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 727 (1091)
.+.+...+.........+..+.+.|+++.. -..+.-++.-++.+.+..++++
T Consensus 447 ~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw--------------~a~g~gva~~~sq~~~~~~~l~------------ 500 (671)
T COG3292 447 SGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLW--------------LAAGSGVAAWESQRRMFVPILD------------ 500 (671)
T ss_pred ccchhcccccccCcCCcchhhhhccCCCCceE--------------EEecceeeeeccccceeccccc------------
Q ss_pred CCccccccEEEEEEecCCCeEEEeecCceEE
Q 001367 728 PSKVKANKISRLTYNNGGQAIFALASNGVHL 758 (1091)
Q Consensus 728 ~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~ 758 (1091)
....-....+--.+.++..+...|.++
T Consensus 501 ----~~~q~qy~f~~~~~d~vw~~~~Rg~vr 527 (671)
T COG3292 501 ----LTGQRQYSFVPVGGDEVWVHRLRGLVR 527 (671)
T ss_pred ----ccceeeEEEEEccCceEeeeeeceeee
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=90.56 E-value=26 Score=37.20 Aligned_cols=166 Identities=11% Similarity=0.066 Sum_probs=88.2
Q ss_pred cEEEEeCCCCceeEEecC------CCcceEEEeecccCC----ceEEEEEecCCeEEEEecCCCCceeeecCCC------
Q 001367 466 TIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------ 529 (1091)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 529 (1091)
.|.+||+.+++.++++.- ....+..+.+...+. +...++-+..+-|.++|+.+++.........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577889999988877643 234566777765332 2334444555679999998876555432211
Q ss_pred -------------CcEEEEEEcC---CCCEEEEEecCCCCceEEEEEecCC-----ce---------eeEEEeccccccc
Q 001367 530 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN 579 (1091)
Q Consensus 530 -------------~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~-----~~---------~~~~~~~~~~~~~ 579 (1091)
..+..++.+| ++++|.....++ -.+|.+.+ .. .++.+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 1255566655 666666554322 12222221 10 11111 111 12
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeEEEEeCCCCCCCCceEEEcc--CCCEEEE
Q 001367 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRICFNK--NGTLLAV 639 (1091)
Q Consensus 580 ~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~ 639 (1091)
....++++++|..+++--..+.|..|+..+. ..............+..+.+.+ +|.+.+.
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 4556788898888888889999999998761 2222222222234556777777 5544433
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=90.53 E-value=33 Score=38.29 Aligned_cols=200 Identities=12% Similarity=-0.003 Sum_probs=104.7
Q ss_pred ecCCCCEEEEEeCCeEEEEEccCceeEEEecCCC--CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecccc-
Q 001367 809 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 885 (1091)
Q Consensus 809 ~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~- 885 (1091)
...||+..+...+|.|.-.|..+++.+....... ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3446766666668888888888888665443221 2333333333 565 6668889999999998898887766554
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec-cCCCcCCCCCceEEEEcCCCCEEEEEe--cCeEEEEE
Q 001367 886 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT-PDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYE 962 (1091)
Q Consensus 886 ~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~fs~dg~~la~~~--d~~i~vwd 962 (1091)
-.+..-..-.++..++ .+.++.+.-.|-.+++..=...... ... .+..-....++...+... ++.+.-.|
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~------~~~~~~~~~~~~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL------SIYGSPAIASGTVYVGSDGYDGILYALN 215 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc------ccccCceeecceEEEecCCCcceEEEEE
Confidence 1122222222333222 3356666666666654321111111 000 011111133444444433 45677777
Q ss_pred cCCcceeeeeecCCccC---EEEEEEee-----CCCEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 963 AEELTCLKQWFPISSVP---ISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 963 ~~~~~~~~~~~~~h~~~---v~~v~fs~-----dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
+.+|.........+... +....... .+.-+..++.++.+...+..+|+.+-++..
T Consensus 216 ~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 216 AEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred ccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 77787766532111111 10011111 112235666778888889998888866553
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=11 Score=43.80 Aligned_cols=187 Identities=10% Similarity=0.008 Sum_probs=95.2
Q ss_pred CCcEEEEEeCCC-----eEEEEeccCccee--eeeccccCCeEEEEECCCCCEEEEEeCC--CcEEEEEcCCCceeeeee
Q 001367 854 DNNVIAIGMDDS-----TILIYNARSSEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQTCRS 924 (1091)
Q Consensus 854 ~~~~la~g~~dg-----~i~iwd~~~~~~~--~~l~~h~~~V~~l~~spdg~~las~s~D--g~i~vwd~~~~~~~~~~~ 924 (1091)
++.++++|+.++ .+..||..+++.. ..+.........+ .-+|+..+.||.+ ..+..||..++....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~--- 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVN--- 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEE---
Confidence 566777777543 5777888776432 2222211112222 2367777888764 357788876644222
Q ss_pred eeccCCCcCCCCCceEEEEcCCCCEEEEE-ec---CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCc
Q 001367 925 LQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE---THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 1000 (1091)
Q Consensus 925 ~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~ 1000 (1091)
+..+.. . ........-+|+..+.| .+ ..+..||..+.+....-...... -...+..-+|+..+.| |.
T Consensus 346 ~~~l~~--~---r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r-~~~~~~~~~~~IYv~G---G~ 416 (480)
T PHA02790 346 MPSLLK--P---RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH-YKSCALVFGRRLFLVG---RN 416 (480)
T ss_pred CCCCCC--C---CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc-ccceEEEECCEEEEEC---Cc
Confidence 111111 0 11122334466666663 32 35778998776554321111111 1122334567666666 45
Q ss_pred EEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecC-----CcEEEEecCCCCCCcc
Q 001367 1001 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWA 1067 (1091)
Q Consensus 1001 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~d-----g~v~~w~~~~~~~~~~ 1067 (1091)
+.+||..+++... ...++..... . .++.. ++...++||.+ ..+..+|+... +|.
T Consensus 417 ~e~ydp~~~~W~~----~~~m~~~r~~----~-~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~--~W~ 475 (480)
T PHA02790 417 AEFYCESSNTWTL----IDDPIYPRDN----P-ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY--SWN 475 (480)
T ss_pred eEEecCCCCcEeE----cCCCCCCccc----c-EEEEE--CCEEEEECCcCCCcccceEEEEECCCC--eEE
Confidence 7889988776552 1122221001 1 11222 47888888865 35778888543 464
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=90.28 E-value=46 Score=42.99 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=87.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.|-..++.|.-+|+|+++=+ .|+.++.||..++... .. -..-...++.++-.-||+..
T Consensus 360 aH~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~Wk---------~~----------~~~~d~~~S~Ls~qgdG~lY 417 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTARWK---------PP----------PDKSDTPFSSLSRQGDGKLY 417 (1774)
T ss_pred HHHHHhhccccCCCCCeEEe---ecCceeeeccccceec---------CC----------CCcccchhhhhcccCCCceE
Confidence 46667788888888885422 5688888887765322 10 01123456666666677766
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc------e--eEEecC
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------R--TYSFEG 483 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------~--~~~~~~ 483 (1091)
| = .|. .|-|+..+.... .....+.+...+++|+- .+.++-....+.+|++.... + .-.+.+
T Consensus 418 A-k-~~~--~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d 486 (1774)
T PF11725_consen 418 A-K-DDD--TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD 486 (1774)
T ss_pred e-c-CCC--ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence 6 2 222 233555443111 12235777888999983 36666666677999987541 1 122333
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCC
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1091)
-.....+|.++ ++ .|+.+..+|.++.=++..
T Consensus 487 G~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 487 GKAQAQSVGLS--ND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred Cchhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence 33355666663 22 688888888887766643
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.99 E-value=1.9 Score=46.33 Aligned_cols=122 Identities=11% Similarity=0.142 Sum_probs=79.8
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 413 (1091)
.++|.++.||+|.+ ++|+--.+++|.+.+....+....... ..+..+..|....|+.+ .-+|.
T Consensus 66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeEEE
Confidence 45999999999998 789999999999999854433221000 01223456888999866 66777
Q ss_pred EECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
....| +-+|-+...+ +.....+.|...|.--.|.++.+-.+|+|+-..+++.=+-+.++
T Consensus 129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 77666 7777766532 22224557888999999999988433333323444433443433
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.99 Score=30.77 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=23.4
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCC--CcEEEE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW 362 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~d--g~i~iW 362 (1091)
......-.+.+|||||++|+.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34455778999999999888888777 766666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.82 E-value=4.3 Score=50.17 Aligned_cols=172 Identities=14% Similarity=0.196 Sum_probs=100.2
Q ss_pred ccCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc
Q 001367 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1091)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1091)
.+..+|+.++.... |...-..+-+-|.=.+.-+ +.|+.+.+|+.+++..... +.+-+.
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~sh 120 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSH 120 (1311)
T ss_pred ccccCCHHHHHHhc-CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence 34556776666655 4444455555565433333 4679999999999665543 334444
Q ss_pred cEEEEE--------ECCCCCEEEEEECCCEEEEEEeeCCccccee------EEEeccccCeeEEEEcCCCCceEEEEeeC
Q 001367 398 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1091)
Q Consensus 398 ~V~~l~--------~spdg~~las~~~d~~i~iwd~~~~~~~~~~------~~~~~h~~~v~~~~~s~d~~~~~l~s~~~ 463 (1091)
.|..+. |-|.=++|.+...--.|.|+-+.-.+..... ..+.-....|+++....+|+ .+ -+|.
T Consensus 121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF-~~G~ 197 (1311)
T KOG1900|consen 121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IF-FAGR 197 (1311)
T ss_pred hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EE-Eeec
Confidence 454444 3344455555555555777665433221111 11222345789999888898 44 4555
Q ss_pred CCcEEEEeC----CCC---c-e----------------eEEec-CCCcceEEEeecccCCceEEEEEecCCeEEEEecCC
Q 001367 464 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1091)
Q Consensus 464 d~~i~iwd~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1091)
|| .+|.+ ..| + + +-.+. .+..+|..+.+.. ....+.+-+..|+|.+||+..
T Consensus 198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 66 44433 211 1 1 01122 4677899998843 345888999999999999875
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.34 E-value=17 Score=39.64 Aligned_cols=151 Identities=14% Similarity=0.132 Sum_probs=83.4
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCe------EEEEeccC--c--ce-----eeeeccccC--------CeEEEEECCCCC
Q 001367 842 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EV-----ISKLEGHSK--------RVTGLVFSDALN 898 (1091)
Q Consensus 842 ~~~i~~l~~s~~~~~~la~g~~dg~------i~iwd~~~--~--~~-----~~~l~~h~~--------~V~~l~~spdg~ 898 (1091)
-+.+..+++.++++.+++ .+++|. ++.+++.. + .. ...+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788888864555544 556666 65555543 1 11 111222222 233788888888
Q ss_pred EEEEEeCC------CcEEEEEcCCCceeeeeeeeccC-------CCcCCCCCceEEEEcCCCCEEEEE------ecC--e
Q 001367 899 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET--H 957 (1091)
Q Consensus 899 ~las~s~D------g~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~i~~l~fs~dg~~la~~------~d~--~ 957 (1091)
++++.-.+ ..|..++.+ +.......+...- ..........+++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88877666 778888876 3332211111100 111222468899999999955442 222 1
Q ss_pred -------EEE--EEcCC-cceeeeee--cC------CccCEEEEEEeeCCCEEEE
Q 001367 958 -------LAI--YEAEE-LTCLKQWF--PI------SSVPISQATFSCDCRMVFT 994 (1091)
Q Consensus 958 -------i~v--wd~~~-~~~~~~~~--~~------h~~~v~~v~fs~dg~~l~t 994 (1091)
+++ ||..+ ++....+. .. ....|+.+.+-+|+++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 55544 32222221 11 3567889999999997763
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=89.18 E-value=52 Score=38.59 Aligned_cols=80 Identities=9% Similarity=0.123 Sum_probs=47.4
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec-----cccC
Q 001367 813 DAYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSK 886 (1091)
Q Consensus 813 g~~la~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-----~h~~ 886 (1091)
+..++-.....|++.+...++....... ....|.+.+... .+++.+..++.+..+.+.......... ....
T Consensus 418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~---~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (504)
T PF10433_consen 418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIND---PQVLVALSGGELVYFELDDNKISVSDNDETILELDN 494 (504)
T ss_dssp TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEESS---SEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEECC---CEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence 5566666677789999887777766543 344566666643 466667778899999888765532221 1457
Q ss_pred CeEEEEECC
Q 001367 887 RVTGLVFSD 895 (1091)
Q Consensus 887 ~V~~l~~sp 895 (1091)
.|.|+..+|
T Consensus 495 eis~l~i~p 503 (504)
T PF10433_consen 495 EISCLSIEP 503 (504)
T ss_dssp -EEEEE---
T ss_pred ceEEEEeCC
Confidence 788888766
|
... |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.7 Score=30.09 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCC--cEEEEEeCCCeEEEEeccC
Q 001367 843 PTATSLAFNPHDN--NVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 843 ~~i~~l~~s~~~~--~~la~g~~dg~i~iwd~~~ 874 (1091)
+.++++.|||..+ .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998555 6999998899999999985
|
It contains a characteristic DLL sequence motif. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.01 E-value=32 Score=35.89 Aligned_cols=214 Identities=11% Similarity=0.100 Sum_probs=119.9
Q ss_pred CeeEEEEcCCCCceEEEEeeCCCcEEEEeCC------CC-ceeEEecC-----CCcceEEEeeccc------CC----ce
Q 001367 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAK------EN----IH 500 (1091)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~------~~----~~ 500 (1091)
.-+.|+|+|.+. +-++...-+...+||.. .. .++-++.. .....+.+.|+.. .+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 467899999887 66667777889999976 12 22233321 1234555555422 11 13
Q ss_pred EEEEEecCCeEEEEecCCCCc-----eeeecCC-CC-cEEEEEEcC--CCCEEEEEecCCCCceEEEEEecCCceeeE--
Q 001367 501 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP-GL-GCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKR-- 569 (1091)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~-~~-~i~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-- 569 (1091)
.++.+++||+|.-|...-... ...+... .. -...+++.. .+.+|..+-. ..++|.++|-.-.....
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 478899999999997533222 1223221 22 234555543 3566665543 25668888754332210
Q ss_pred EEeccc--cccc--ceE---------EEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc----
Q 001367 570 TYQGLQ--LQHN--SVS---------VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 632 (1091)
Q Consensus 570 ~~~~~~--~~~~--~v~---------~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 632 (1091)
.+.... ..-. .|. -..-.++...=+.|..-|.|-+||+ .|.+++.+...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 011000 0000 011 1111122222233344578999997 577888886666655667787765
Q ss_pred --CCCEEEEEECCCeEEEEECCCCCeeccccc
Q 001367 633 --NGTLLAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 633 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
.+.+|+---.||+|..||..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 356666666799999999998877666553
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=88.98 E-value=1.7 Score=30.09 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=26.6
Q ss_pred ccEEEEEECCC-C--CEEEEEECCCEEEEEEeeCC
Q 001367 397 VSVNRVVWSPD-G--SLLGVAYSKHIVQLYAYHGG 428 (1091)
Q Consensus 397 ~~V~~l~~spd-g--~~las~~~d~~i~iwd~~~~ 428 (1091)
++|.++.|||+ + .+||.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 58888888899999999863
|
It contains a characteristic DLL sequence motif. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.93 E-value=2 Score=41.63 Aligned_cols=31 Identities=39% Similarity=0.606 Sum_probs=25.9
Q ss_pred ccEEEEEECCCC------CEEEEEECCCEEEEEEeeC
Q 001367 397 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHG 427 (1091)
Q Consensus 397 ~~V~~l~~spdg------~~las~~~d~~i~iwd~~~ 427 (1091)
..|.+++|||-| .+||+...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999954 5788899999999998664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.58 E-value=31 Score=35.18 Aligned_cols=224 Identities=10% Similarity=0.088 Sum_probs=123.5
Q ss_pred CCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccce
Q 001367 694 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 773 (1091)
Q Consensus 694 s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 773 (1091)
++||..-+++...+.|--.|..++ ....+.+ +....-..+..-|||..-++-+..+..+
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tG---ev~~ypL---g~Ga~Phgiv~gpdg~~Witd~~~aI~R--------------- 128 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATG---EVETYPL---GSGASPHGIVVGPDGSAWITDTGLAIGR--------------- 128 (353)
T ss_pred CCCCceEEecCccccceecCCCCC---ceEEEec---CCCCCCceEEECCCCCeeEecCcceeEE---------------
Confidence 566655555555455444443322 1222222 1334445666777776555444333222
Q ss_pred eeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCC----------eEEEEEccCceeEEEecCCCC
Q 001367 774 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG----------VISLYIVMTFKTILTIMPPSP 843 (1091)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg----------~i~iwd~~~~~~~~~~~~~~~ 843 (1091)
.++++.+ ..++.++............|.++|.+-.++..| .|++|+.- ...
T Consensus 129 --------~dpkt~e-vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~ 189 (353)
T COG4257 129 --------LDPKTLE-VTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGG 189 (353)
T ss_pred --------ecCcccc-eEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCC
Confidence 2344443 444555554456778889999999999988633 24444432 223
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc--eeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 921 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~ 921 (1091)
.-..|+..| +|.+-++.-.+..|-..|..++. .+-.-.+....-..+.-+|.|+.-+|-...+.+.-+|-....
T Consensus 190 gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--- 265 (353)
T COG4257 190 GPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--- 265 (353)
T ss_pred CCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc---
Confidence 456788899 77777776677778777777662 121122212234455567788888887777778777766533
Q ss_pred eeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCC
Q 001367 922 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 965 (1091)
Q Consensus 922 ~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~ 965 (1091)
......+.... .-.++.....|+.-.+ ...+.|.-+|-++
T Consensus 266 W~eypLPgs~a----rpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 266 WIEYPLPGSKA----RPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ceeeeCCCCCC----CcceeeeccCCcEEeeccccCceeecCccc
Confidence 11222222111 2445666666665554 3445555555543
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=88.34 E-value=2.2 Score=43.14 Aligned_cols=76 Identities=9% Similarity=0.108 Sum_probs=53.1
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeee-ee-eccCCCc----CCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCc
Q 001367 893 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-SL-QTPDGVM----TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 966 (1091)
Q Consensus 893 ~spdg~~las~s~Dg~i~vwd~~~~~~~~~~-~~-~~~~~~~----~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~ 966 (1091)
+..++++|+..+.+|.+++||+.+.+..... .+ ..+.... .....|..+.++.+|.-|++-++|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999997654322 11 1111100 1224688999999999988877888999987644
Q ss_pred ce
Q 001367 967 TC 968 (1091)
Q Consensus 967 ~~ 968 (1091)
..
T Consensus 98 ~W 99 (219)
T PF07569_consen 98 CW 99 (219)
T ss_pred ee
Confidence 33
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.10 E-value=16 Score=40.28 Aligned_cols=150 Identities=10% Similarity=0.075 Sum_probs=89.6
Q ss_pred EEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccC------CceEEEEEecCCeEEEEecCCCC
Q 001367 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSLG 520 (1091)
Q Consensus 447 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~ 520 (1091)
+-...+...+++..|+....++-.|++.|+.+..+..|...+ +.+.|.. +.+.|+ |-.+..|.-.|.+...
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 333334444466677777889999999999999998887664 3333321 223344 4445555555655444
Q ss_pred ceeeecCCCCcEEEEEEc----CCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE
Q 001367 521 ARVDYDAPGLGCTRMAYS----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 596 (1091)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s----~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 596 (1091)
..........-.+.-.|+ ..+-++++++..| -|++||.-.-.....+.+.. ..|..+..+.+|+++++.
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kG----DirLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKG----DIRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHILAT 621 (776)
T ss_pred CceeeeeehhccccccccccccccCceEEEecCCC----ceeeehhhcchhhhcCcccc---cceeeeEeecCCcEEEEe
Confidence 222222111112212222 2445788887633 49999966555555555555 788899999999999987
Q ss_pred eCCCeEEEEEC
Q 001367 597 GDDHVIKIWDM 607 (1091)
Q Consensus 597 s~dg~i~iwd~ 607 (1091)
+.. .+.+-|+
T Consensus 622 Ck~-yllL~d~ 631 (776)
T COG5167 622 CKN-YLLLTDV 631 (776)
T ss_pred ecc-eEEEEec
Confidence 754 4555554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=87.94 E-value=11 Score=43.33 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=53.4
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
...-++++.-+|.|+.++.+..||.|++|+.......+ +-....+-..+.|...| |++...|..+.-|. +.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~d 83 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-ED 83 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-cc
Confidence 34567888889999999999999999999987654321 11233345566776655 56666677777886 55
Q ss_pred CceeEEe
Q 001367 475 GSRTYSF 481 (1091)
Q Consensus 475 ~~~~~~~ 481 (1091)
|-..+.|
T Consensus 84 gvvqqqf 90 (1636)
T KOG3616|consen 84 GVVQQQF 90 (1636)
T ss_pred Ccchhhc
Confidence 5444444
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.02 E-value=42 Score=39.40 Aligned_cols=508 Identities=8% Similarity=-0.008 Sum_probs=0.0
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEE---cCCCcEEEEEc-CCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVG---TNVGDTGLWDV-NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg---~~dg~i~iWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.++..-++.+-.++|..-+.++-+++ +.|..|.|... ..+..-....|. ..-....+.++.
T Consensus 10 ~~fpt~sg~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~~d~s~l~~F~---------------ip~f~dkl~s~~ 74 (1243)
T COG5290 10 STFPTASGDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSIYDESGLKRFE---------------IPFFPDKLLSFK 74 (1243)
T ss_pred ccCCCCCCChHHhcccccCceEEEEeecCCCCCCeeeeeeccccchhheeEec---------------cCCcchHhhhhh
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1091)
+-.+-..+...-..|.|..--...--.-.....+..-...|.+.+||.|.+ .++....+..|.+++ ..-.++....-
T Consensus 75 hf~~~~~~~f~~~~gDii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~--~~cvvt~~r~il~~~-k~fd~ise~~L 151 (1243)
T COG5290 75 HFHVLTFEYFLIDEGDIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEK--TWCVVTSTREILLFD-KYFDPISEYHL 151 (1243)
T ss_pred hhhhhheeeEEecCCcEEEEEcCCCcccchhhhhccccCceEEEeeccCCc--eEEEEEcCceEEEEe-ccccccchhhc
Q ss_pred CCcceEEEeecccCCceEEEEEecC------------------------CeEEEEecCCCCceeeecCCCCcEEEEEEcC
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVD------------------------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSA 539 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~ 539 (1091)
.......+ ..-++.+.. ..=.+.++++.+.. ++|-.
T Consensus 152 ~~~dl~ef--------~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~------------i~wrg 211 (1243)
T COG5290 152 KKSDLVEF--------GKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKI------------IFWRG 211 (1243)
T ss_pred chhHHHHh--------ccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceE------------EEEcc
Q ss_pred CCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCe-----EEEEECCC---Ce
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNK---VQ 611 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~-----i~iwd~~~---~~ 611 (1091)
|..+.+.+.........+++|. +.|.+-..-.... +.-..+.|-|+|..+++-+.||. |.++..+. |+
T Consensus 212 D~~y~~v~r~Ee~prra~rvys-reg~lds~sep~~---g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGe 287 (1243)
T COG5290 212 DTEYNLVGRSEERPRRAFRVYS-REGQLDSASEPVT---GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGE 287 (1243)
T ss_pred Ccceeeecchhcccccceeeec-cccccccccCCcc---cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCC
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCC
Q 001367 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNE 691 (1091)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~ 691 (1091)
.-........ +..++|+-....++++.. +.+.+|...+-............+.-+.|.|
T Consensus 288 f~lr~~~dEk---~~~~~wn~~s~vlav~~~-n~~~lwttkNyhWYLK~e~~ip~~s~vkwhp----------------- 346 (1243)
T COG5290 288 FDLRVGCDEK---AFLENWNLLSTVLAVAEG-NLLKLWTTKNYHWYLKVERQIPGISYVKWHP----------------- 346 (1243)
T ss_pred ccccCCchhh---hhhhhhhHHHHHHHHhhc-ceEEEEEccceEEEEEEeecCCCcceeeecc-----------------
Q ss_pred CCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccccccc
Q 001367 692 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 771 (1091)
Q Consensus 692 ~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~ 771 (1091)
..+...+++++. .|..+.|+..-..-.+......-..+-++........
T Consensus 347 --e~~nTl~f~d~~-----------------------------~I~~V~f~~k~~~~~s~~p~d~g~~~ViDGs~~l~Tp 395 (1243)
T COG5290 347 --EEKNTLLFRDGE-----------------------------RILRVFFSEKKTHHGSEYPFDNGTSYVIDGSYMLYTP 395 (1243)
T ss_pred --ccCcEEEEecCC-----------------------------eEEEEEeehhhhcCCcccCccCCceEEEcCceEEecc
Q ss_pred ceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCC-------C
Q 001367 772 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP-------T 844 (1091)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~-------~ 844 (1091)
-.....++..+...-+. ...|..++.+-..+..+...+..+..+...+.+.+..+..... .
T Consensus 396 lsl~n~PPPm~~~~~~~------------d~NV~dv~~s~~~~~~aa~~~drli~f~~~s~e~i~k~~ef~~sef~s~v~ 463 (1243)
T COG5290 396 LSLKNLPPPMFSVRVGF------------DTNVVDVFPSFAEKKGAALLRDRLIMFRWDSEEFINKRTEFLESEFDSIVL 463 (1243)
T ss_pred hhhhcCCCCeEEEEecC------------CCceeeeccchhhhhHhhhccceeEEEecCcHHHHHHhccccHHhhhhhcc
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCceee
Q 001367 845 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQT 921 (1091)
Q Consensus 845 i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~las~s~Dg~i~vwd~~~~~~~~ 921 (1091)
...+.+-. ++..++....++.-+++=++.+..-....--...+..-+.-. +..++.-+..+|.++-+|++.
T Consensus 464 f~~~l~l~-~~~v~ll~dtnn~s~~~i~~~~d~~e~~k~~~ve~~~~~~l~~~~c~~~l~y~t~~G~v~~yn~e~----- 537 (1243)
T COG5290 464 FDGFLVLK-SGHVFLLKDTNNESDTYITRNGDVDERKKRGTVETRRTSTLVHQLCQTLLRYGTCVGVVKHYNFEE----- 537 (1243)
T ss_pred ccceEEec-CceEEEEeccCCCcceEEeecCcccchhhccceeeeeeehhhHHHHHHHHhhcccceeEEEecchh-----
Q ss_pred eeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 922 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 922 ~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
+.+........ +......|-...+++
T Consensus 538 -kl~e~~kfp~~----v~df~v~pVH~t~v~ 563 (1243)
T COG5290 538 -KLYELLKFPNG----VIDFSVDPVHSTLVA 563 (1243)
T ss_pred -hhHHHhhCCCc----eeEEEeeccccceee
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=87.00 E-value=53 Score=36.14 Aligned_cols=162 Identities=9% Similarity=0.010 Sum_probs=75.6
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-Eec-----------CeE
Q 001367 896 ALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----------THL 958 (1091)
Q Consensus 896 dg~~las~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d-----------~~i 958 (1091)
++++++.|+.+ ..+.++|..+.+-.. +..+.............+..-++++.+. |.+ ..+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~---~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTF---LTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEE---eccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 56677777754 247788888754322 2211100000011222223345565555 322 247
Q ss_pred EEEEcCCcceeeeeecC--CccCEEEEEEeeCCCEEEEEEcC-------------CcEEEEeCCCCceEEEeecccccCC
Q 001367 959 AIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-------------GTLSIHEASNLEVQCRILSTAYLRP 1023 (1091)
Q Consensus 959 ~vwd~~~~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~ 1023 (1091)
.+||..+.+.......+ ...+-...+..-+++.++.++.+ ..|.+||..+.+....-. ....|.
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~-~g~~P~ 240 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET-TGAKPS 240 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc-cCCCCC
Confidence 78998876544321111 01111111223466666655532 358888888876553211 111121
Q ss_pred CCcccccceeEEEeCCCCCCeEEEEecC--------------CcEEEEecCCCCCCcccCC
Q 001367 1024 TTSCLHVYPHAIAAHPLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVLP 1070 (1091)
Q Consensus 1024 ~~~~~~v~~~~~~~~p~d~~~l~~g~~d--------------g~v~~w~~~~~~~~~~~~~ 1070 (1091)
. +....++.+ ++.+++.|+.. +.|..+|+ ...+|...+
T Consensus 241 ~----r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~--~~~~W~~~~ 292 (341)
T PLN02153 241 A----RSVFAHAVV---GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT--ETLVWEKLG 292 (341)
T ss_pred C----cceeeeEEE---CCEEEEECcccCCccccccccccccccEEEEEc--CccEEEecc
Confidence 1 001111222 36788888852 24566666 445687664
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=57 Score=36.45 Aligned_cols=150 Identities=9% Similarity=-0.018 Sum_probs=81.0
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcc
Q 001367 888 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 967 (1091)
Q Consensus 888 V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~ 967 (1091)
...+..++||.+++.+..-..++-||-.... ...+.... . ..+..+.|.++|..++++..|.+..= ...++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~--~---~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRAS--A---RRIQNMGWRADGGLWLLTRGGGLYVS-KGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCC--c---cceeeeeEcCCCCEEEEeCCceEEEe-cCCCC
Confidence 4456677888877755433333334432200 01111111 1 25889999999999998887776543 33333
Q ss_pred -----eeeeeecC-CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCC
Q 001367 968 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1041 (1091)
Q Consensus 968 -----~~~~~~~~-h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1041 (1091)
........ ....+.++.|.+|+..+++ +..|.+... .+.|+.-.+.......+ ..++ .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~-----~~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIA-----ANLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCC-----ccee--EEEEcC--
Confidence 11211111 1245889999988886665 577866655 34454322221111111 2244 455554
Q ss_pred CCeEEEEecCCcEEEE
Q 001367 1042 PTQFAVGLTNGEVYVI 1057 (1091)
Q Consensus 1042 ~~~l~~g~~dg~v~~w 1057 (1091)
.+...+.+.+|.|..|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3556667778887665
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=86.79 E-value=62 Score=36.71 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=41.4
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
+...=+..+.|+|.|||+ +|++--..|.|++++..++.......+ ..............|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 334445899999999997 666654469999998665542211111 110011136788999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=86.58 E-value=54 Score=36.68 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=18.3
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
+.+||.++.+....-..+.. .....+..-+++++++|+.
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~ 352 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGE 352 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCC
Confidence 45788877654322222111 1122233345666666664
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=86.56 E-value=69 Score=37.07 Aligned_cols=162 Identities=10% Similarity=0.034 Sum_probs=79.1
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-Eec-----CeEEEEEcC
Q 001367 896 ALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAE 964 (1091)
Q Consensus 896 dg~~las~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d-----~~i~vwd~~ 964 (1091)
++++.+.|+.+ ..+..+|+.+.+... +........ ..-...+..-++++.+. +.+ ..+..||..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~---l~~~~~~P~--~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~ 302 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKL---LTPVEEGPT--PRSFHSMAADEENVYVFGGVSATARLKTLDSYNIV 302 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEE---cCcCCCCCC--CccceEEEEECCEEEEECCCCCCCCcceEEEEECC
Confidence 56677777765 357788888755322 221110010 01112222234555555 332 347788887
Q ss_pred CcceeeeeecC--CccCEEEEEEeeCCCEEEEEEcC----CcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeC
Q 001367 965 ELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVD----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1038 (1091)
Q Consensus 965 ~~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1038 (1091)
+.+.......+ ...+-...+..-+++.++.++.+ ..+.+||+.+.+....-. ....|.. +....++.+
T Consensus 303 t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~-~g~~P~~----R~~~~~~~~- 376 (470)
T PLN02193 303 DKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVET-FGVRPSE----RSVFASAAV- 376 (470)
T ss_pred CCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEecc-CCCCCCC----cceeEEEEE-
Confidence 76543221100 01111112223467777777765 358899998887643211 1111111 011112222
Q ss_pred CCCCCeEEEEecC--------------CcEEEEecCCCCCCcccCCCC
Q 001367 1039 PLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVLPPD 1072 (1091)
Q Consensus 1039 p~d~~~l~~g~~d--------------g~v~~w~~~~~~~~~~~~~~~ 1072 (1091)
++++++.|+.+ +.+.++|+.. .+|...++.
T Consensus 377 --~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t--~~W~~~~~~ 420 (470)
T PLN02193 377 --GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET--LQWERLDKF 420 (470)
T ss_pred --CCEEEEECCccCCccccccCccceeccEEEEEcCc--CEEEEcccC
Confidence 36788888864 2466777644 558866543
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.34 E-value=2.6 Score=45.25 Aligned_cols=172 Identities=13% Similarity=0.144 Sum_probs=94.3
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCccee-eee-ccccC----CeE-EEEECCCCCEEEEEeC
Q 001367 833 KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKL-EGHSK----RVT-GLVFSDALNILVSSGG 905 (1091)
Q Consensus 833 ~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~-~~l-~~h~~----~V~-~l~~spdg~~las~s~ 905 (1091)
+.++.+......+..+-..| ||+.+.+-+. ..+.++++.+...- ..+ ....+ .|+ ++..-..|.-|..++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 34444555667888899999 8988887665 68899988764321 111 11111 122 1222234566777889
Q ss_pred CCcEEEE-EcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEE
Q 001367 906 DAQIFVW-DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQA 983 (1091)
Q Consensus 906 Dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v 983 (1091)
||.|.-| |+..+.......++..+-. +.++..+.=-.+.+-+++ ...|++.++.....+.+.. .. --..+.-+
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~---pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~-~~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLA---PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ER-AYQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccC---cccceeeccccccceEEEEcCCCceeeeecccCcceeh-hh-hhcCccee
Confidence 9988877 4443322111111111111 112322222223333444 4556666665444333221 11 12356678
Q ss_pred EEeeCCCEEEEEEcCCcEEEEeCCCCceE
Q 001367 984 TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1012 (1091)
Q Consensus 984 ~fs~dg~~l~t~~~dg~v~iwd~~~~~~~ 1012 (1091)
++||++.++++- ..|.++++.+++...-
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCCC
Confidence 999999999864 5678999988876544
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=86.14 E-value=13 Score=37.94 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=83.2
Q ss_pred EEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC---ceeeEEEecccccccceEEEEEcC
Q 001367 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
.+||+.+.+..........-+.+-.+-+||+++.+++. .++...+++++... ..........-.....-.+...-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45888776554433333334455568899999988875 34667788888654 111111111011123444556678
Q ss_pred CCCEEEEEeCCC-eEEEEECCC--CeeEEE--Ee---CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccc
Q 001367 589 AKDQILAAGDDH-VIKIWDMNK--VQLLTT--ID---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1091)
Q Consensus 589 ~~~~l~~~s~dg-~i~iwd~~~--~~~~~~--~~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1091)
||+.++.|+... +..+|.... ...... +. .......-..+...|+|++++.+..+. .|||..+.+.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 999999987654 445555422 111111 11 011111234677889999998887654 45688777665555
Q ss_pred cc
Q 001367 661 GV 662 (1091)
Q Consensus 661 ~~ 662 (1091)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 43
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=85.82 E-value=5 Score=40.54 Aligned_cols=75 Identities=9% Similarity=-0.062 Sum_probs=56.1
Q ss_pred EEEcCCCCEEEE-EecCeEEEEEcCCcceeeee------ec-------CCccCEEEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 941 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 941 l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~------~~-------~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
+.+..++.+|++ ..+|.+++||+.+++.+... +. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 445667777776 89999999999998876442 22 2457889999999998887764 688999998
Q ss_pred CCCceEEEee
Q 001367 1007 SNLEVQCRIL 1016 (1091)
Q Consensus 1007 ~~~~~~~~~~ 1016 (1091)
.-+.......
T Consensus 95 ~L~~W~~vsd 104 (219)
T PF07569_consen 95 DLGCWIRVSD 104 (219)
T ss_pred ccceeEEecc
Confidence 8776664433
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=85.78 E-value=51 Score=38.16 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=71.6
Q ss_pred CCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEE
Q 001367 864 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 943 (1091)
Q Consensus 864 dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f 943 (1091)
.+...++|.. |..+..+.........+..-++|.+++..+ ..++.+|+..... . ......+... .-..+..
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~-~--~~~l~~~~~~---~HHD~~~ 197 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVI-W--EYDLPGGYYD---FHHDIDE 197 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EE-E--EEE--TTEE----B-S-EEE
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEE-E--eeecCCcccc---cccccEE
Confidence 4455555543 444444332222111166678998887655 7788888876321 1 1222221100 1236788
Q ss_pred cCCCCEEEEEe--------------cCeEEEEEcCCcceeeeeecC-C-------------------------ccCEEEE
Q 001367 944 HKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPISQA 983 (1091)
Q Consensus 944 s~dg~~la~~~--------------d~~i~vwd~~~~~~~~~~~~~-h-------------------------~~~v~~v 983 (1091)
-|+|.+|+.+. +..|..+| .+|+.+..|... | -..+.++
T Consensus 198 l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi 276 (477)
T PF05935_consen 198 LPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSI 276 (477)
T ss_dssp -TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEE
T ss_pred CCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCcc
Confidence 89999998754 23466666 677666554211 1 1357889
Q ss_pred EEee-CCCEEEEEEcCCcEEEEeCCCCceEEEeeccc
Q 001367 984 TFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1019 (1091)
Q Consensus 984 ~fs~-dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~ 1019 (1091)
.+.+ ++.+|+++-.-..|...|..+++..-.+....
T Consensus 277 ~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 277 DYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred EEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 9999 55555555444578888988998887766543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=85.67 E-value=53 Score=35.79 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=87.8
Q ss_pred ccccEEEEEEecCCCeEEEeecCce------EEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCee
Q 001367 732 KANKISRLTYNNGGQAIFALASNGV------HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 805 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 805 (1091)
.-+.+..+.+.+++..+++.+.+|. +...++..... ..........+.+-+.. |..+ . .......
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~-----~--~~~~D~E 88 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPF-----P--KNGLDPE 88 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcC-----C--cCCCChh
Confidence 4467888999976666888887777 55555443111 00111111111111111 1101 0 0122556
Q ss_pred EEEecCCCCEEEEEe-C------CeEEEEEccCceeEEEec---------------CCCCCeEEEEEcCCCCcEEEEEeC
Q 001367 806 CFALSKNDAYLFSAS-G------GVISLYIVMTFKTILTIM---------------PPSPTATSLAFNPHDNNVIAIGMD 863 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~-d------g~i~iwd~~~~~~~~~~~---------------~~~~~i~~l~~s~~~~~~la~g~~ 863 (1091)
++++.++|.++++.. + ..|.-++.. |+....+. ..+....+++++| +|+.|.++.+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEEC
Confidence 788888888877765 4 567777766 66554441 1234678999999 7875555432
Q ss_pred -----CC--e-------EEEE--eccC-cce----eeeecc-----ccCCeEEEEECCCCCEEEE
Q 001367 864 -----DS--T-------ILIY--NARS-SEV----ISKLEG-----HSKRVTGLVFSDALNILVS 902 (1091)
Q Consensus 864 -----dg--~-------i~iw--d~~~-~~~----~~~l~~-----h~~~V~~l~~spdg~~las 902 (1091)
|+ . ++++ |..+ ++. ...+.. ....|+.+.+-+++++|+-
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 22 1 4454 5444 222 233332 3457888999999887763
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=85.42 E-value=60 Score=35.34 Aligned_cols=70 Identities=9% Similarity=-0.064 Sum_probs=34.2
Q ss_pred CceEEEEEec-----CCeEEEEecCCCCceeeecCCC-CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 498 NIHFIFSISV-----DGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 498 ~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
++.+.+.|+. ...+..||+.+.+=...-.... ......+...+++..+.++.++.....+..||..+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3456666664 2357777776543222111111 11222233445666666665332223467888887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.12 E-value=16 Score=46.13 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=46.3
Q ss_pred CceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCce
Q 001367 937 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1011 (1091)
Q Consensus 937 ~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~ 1011 (1091)
++.+..+...+..+.....+.+-+|+.........+...+... +.++..++++..||.+.+||...|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence 4455555555555555566666677655444444433322211 88999999999999999999999865
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=85.12 E-value=3.9 Score=48.14 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=78.3
Q ss_pred CcEEEEEcCC-CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccc-c-ccceeeeeecCCCccEEEEEEC--CCCCE
Q 001367 336 SPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGA-C-SMLFKTALVRDPGVSVNRVVWS--PDGSL 410 (1091)
Q Consensus 336 ~V~~v~fspd-g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~h~~~V~~l~~s--pdg~~ 410 (1091)
.|..+....= +..+|+.+..||.|.+|.+++=-...... .-+... . ....+......-...++.++++ ...++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence 4555544432 22478888999999999873210000000 000000 0 0000000111234689999999 88999
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCC----ceEEEEeeCCCcEEEEeC
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK----QISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~----~~~l~s~~~d~~i~iwd~ 472 (1091)
||++++...|.||-............-..|...|.+|+|-++.. ...+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99999999888887765321111101113667899999977641 136888999999999886
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=84.87 E-value=30 Score=31.28 Aligned_cols=122 Identities=13% Similarity=0.080 Sum_probs=69.8
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceee---eceeEEeccccccceeeeeecCCCccEEEEEECC-----CCC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGS 409 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~ 409 (1091)
..-.|..... -|++++..|.|.|.+......... ..++ +-.-+..|++++-.+ +..
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D 65 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRD 65 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcC
Confidence 3345555555 357777789999998765432211 0111 112346777776443 345
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCC--CceEEEEeeCCCcEEEEeCCCCceeEEe
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC--KQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1091)
.|+.|+. ..+..||+.....+. .+.-.+.|.++.+-.-+ ...+++ .+.+..|.-+|.+..+..++.
T Consensus 66 ~LliGt~-t~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 66 CLLIGTQ-TSLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEEEecc-ceEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcEEEEEe
Confidence 6777654 459999999876543 23444667777773211 111444 444778888885555544443
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=83.57 E-value=1e+02 Score=36.54 Aligned_cols=203 Identities=11% Similarity=0.095 Sum_probs=105.4
Q ss_pred CeEEEEEcCCCCcEEEEEeCCC-eEEEEeccCcce-----eeeeccccCCeEEEEECCCCCEEEEEeC--CC--cEEEEE
Q 001367 844 TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEV-----ISKLEGHSKRVTGLVFSDALNILVSSGG--DA--QIFVWD 913 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg-~i~iwd~~~~~~-----~~~l~~h~~~V~~l~~spdg~~las~s~--Dg--~i~vwd 913 (1091)
.+.+++.++ ++..+|....++ .+++..+..+.. ...+. ....+.-+|.++| .+-+... ++ .+++..
T Consensus 364 ~~~s~avS~-~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSR-DESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcC-CCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCC-CEEEecCCCCCceEEEEEc
Confidence 678999999 777777776665 566655433322 12222 2347778888887 4444422 22 255555
Q ss_pred cCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e---cCeEEEEEcC---Ccc-eeee---eecCCccCEEE
Q 001367 914 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H---ETHLAIYEAE---ELT-CLKQ---WFPISSVPISQ 982 (1091)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~---d~~i~vwd~~---~~~-~~~~---~~~~h~~~v~~ 982 (1091)
- +++... +... ... ...|..+..|+||..+|.- . .++|.|--+. .|+ .+.. +... ...+.+
T Consensus 440 ~-~G~~~~---V~~~-~l~--g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~-l~~v~~ 511 (599)
T PRK13613 440 G-DGEPVE---VRTP-ELD--GHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE-LEDVTD 511 (599)
T ss_pred C-CCcEEE---eecc-ccC--CCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC-CCccce
Confidence 3 333221 2221 100 0269999999999999873 2 2556554332 332 1111 1112 335899
Q ss_pred EEEeeCCCEEEEEE-cCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 983 ATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 983 v~fs~dg~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
+.|..++.+++.+. .++...+|.+.-.-...... ... .-..+..+..+..+ +..++++..++.|... .
T Consensus 512 ~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~----~~~--~v~~~~~ia~~~~~--~~~~v~~~~~~~v~~~---~ 580 (599)
T PRK13613 512 MSWAGDSQLVVLGREEGGVQQARYVQVDGSTPPAS----APA--AVTGVESITASEDE--RLPLVAGTSEDGIVRL---S 580 (599)
T ss_pred eEEcCCCEEEEEeccCCCCcceEEEecCCcCcccc----ccc--CCCCeeEEEecCCC--CceEEEEecCCCeEEe---c
Confidence 99999999877553 33345555543321110100 000 11223334444333 2356654666665433 3
Q ss_pred CCCCcccC
Q 001367 1062 PGDTWAVL 1069 (1091)
Q Consensus 1062 ~~~~~~~~ 1069 (1091)
.+..|...
T Consensus 581 ~g~~W~~~ 588 (599)
T PRK13613 581 SGLQWQTV 588 (599)
T ss_pred CCCcceEe
Confidence 44678754
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.41 E-value=24 Score=44.52 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCce
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL 370 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~ 370 (1091)
....++|+|..+ ++|.|+..|.|+++-...-+..
T Consensus 37 ~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 37 TPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCcceeeccccc-eEEEEEecccEEEecccceEEE
Confidence 677899999997 8899999999999986544433
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=83.30 E-value=7.9 Score=37.53 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCeEEEEECCCC------CEEEEEeCCCcEEEEEcCC
Q 001367 886 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 886 ~~V~~l~~spdg------~~las~s~Dg~i~vwd~~~ 916 (1091)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 5789999999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=83.27 E-value=26 Score=39.57 Aligned_cols=113 Identities=11% Similarity=0.066 Sum_probs=61.1
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC------CEEEEE--e--
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H-- 954 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg------~~la~~--~-- 954 (1091)
-...+.|+|.|||++|++--..|.|++++-.++.......+...... ........++|+|+- .+|.++ .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~-~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVND-AQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceecc-CCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 34578899999998888765579999998665432111111111000 012468899999874 344432 1
Q ss_pred -------cCeEEEEEcCCc--c--eeeeeecC----CccCEEEEEEeeCCCEEEEEEcC
Q 001367 955 -------ETHLAIYEAEEL--T--CLKQWFPI----SSVPISQATFSCDCRMVFTSFVD 998 (1091)
Q Consensus 955 -------d~~i~vwd~~~~--~--~~~~~~~~----h~~~v~~v~fs~dg~~l~t~~~d 998 (1091)
...|.-|.+... . ....++.+ ....-..|+|.|||.++++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223444554321 0 01111211 01224567899999877766544
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=82.42 E-value=83 Score=34.59 Aligned_cols=188 Identities=13% Similarity=0.145 Sum_probs=101.0
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec--ccCCceE--EEEEec-C---CeEEEEecCCCCcee-eecC
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHF--IFSISV-D---GKIKAWLYDSLGARV-DYDA 527 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~--l~s~~~-d---g~i~iwd~~~~~~~~-~~~~ 527 (1091)
+++....++-+.+||+. |+.++.+. .+..+.+... ..-++.. |+.++. + ..|++|.++...... .+..
T Consensus 70 lIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 67777778889999965 55666663 2333433321 1112222 334432 2 469999887533222 2221
Q ss_pred -------CCCcEEEEEE--cC-CCCEEEEEecCCCCceEEEEEecC---Cc----eeeEEEecccccccceEEEEEcCCC
Q 001367 528 -------PGLGCTRMAY--SA-NGRRLFSCGTSKEGESFLVEWNES---EG----AIKRTYQGLQLQHNSVSVVHFDTAK 590 (1091)
Q Consensus 528 -------~~~~i~~~~~--s~-d~~~l~~~~~~~~~~~~i~iwd~~---~~----~~~~~~~~~~~~~~~v~~v~~~~~~ 590 (1091)
....++.+|+ ++ +|.+.+.... + ++.+..|-+. .+ +.++.|... ..+..|......
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDET 219 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETTT
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEeccc
Confidence 1123666776 33 4555444432 2 3445555443 33 467777663 368888888888
Q ss_pred CEEEEEeCCCeEEEEECCC-----CeeEEEEeCCCCCCCCceEEEc--cCC-CEEEEEE-CCCeEEEEECCCC
Q 001367 591 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFN--KNG-TLLAVIA-NENRIKILETPES 654 (1091)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--~~~-~~l~~~~-~dg~i~iwd~~~~ 654 (1091)
.+|+.+-++.-|.-|+.+. ++.+.......-...+-.+++- .++ .+|++.+ .+++..+|+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999888888762 2233332222223456666653 333 3454444 4788999998753
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=81.71 E-value=1.2e+02 Score=35.93 Aligned_cols=243 Identities=13% Similarity=0.200 Sum_probs=126.3
Q ss_pred EecCCCCEEEEEe-CCeEEEEEcc-CceeEEEecC-CCCCeEEEEEcCC--CCcEEEEEeCCC-eEEEEeccCc------
Q 001367 808 ALSKNDAYLFSAS-GGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPH--DNNVIAIGMDDS-TILIYNARSS------ 875 (1091)
Q Consensus 808 ~~s~dg~~la~~~-dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~--~~~~la~g~~dg-~i~iwd~~~~------ 875 (1091)
.++|+...+-.|= ...|.-|-+. |.+.+..+.- +...|.||..-.. +.++.++|-.++ .-++-.+..+
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~ 113 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED 113 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence 5677777776664 4445555444 5566666543 4456777765431 134566665554 3344433322
Q ss_pred -----ce--eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCC-cCCCCCceEEEEcCCC
Q 001367 876 -----EV--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV-MTLAPSETHIQFHKDQ 947 (1091)
Q Consensus 876 -----~~--~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~fs~dg 947 (1091)
+. ...+. -.++|.++.|.++++.++..-..|.|.+||.+.+.......+...... ..+..-|.....-...
T Consensus 114 ~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~ 192 (670)
T PF10395_consen 114 GTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGK 192 (670)
T ss_pred cccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCC
Confidence 11 11222 356799999999999999999999999999944332221111111111 0000111111111223
Q ss_pred CEEEE-Ee-cC---eEEEEEcC-Ccceeeeee--cCCccCEEEEEEee-CCCEEEEEEcCCcEEEEeCCCCceEEEeecc
Q 001367 948 TRFLL-VH-ET---HLAIYEAE-ELTCLKQWF--PISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILST 1018 (1091)
Q Consensus 948 ~~la~-~~-d~---~i~vwd~~-~~~~~~~~~--~~h~~~v~~v~fs~-dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~ 1018 (1091)
.++++ +. ++ ..+++.+. ....+..+. ..+........|+. +|.+..- .+++|.+|+++..+....+...
T Consensus 193 ~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~ 270 (670)
T PF10395_consen 193 DLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLP 270 (670)
T ss_pred ceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEec
Confidence 44444 33 22 47788771 122222211 11122333334443 5554333 6789999999999888887755
Q ss_pred cccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 1019 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1019 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
....... ..+.++ .+.+| .+.|++ .++.|++.|+.
T Consensus 271 ~ii~~~~--~~~vSl-~~~s~--nRvLLs--~~nkIyLld~~ 305 (670)
T PF10395_consen 271 SIIDKES--DDLVSL-KPPSP--NRVLLS--VNNKIYLLDLK 305 (670)
T ss_pred hhhcccc--ccceEe-ecCCC--CeEEEE--cCCEEEEEeeh
Confidence 4444431 222222 22333 344443 36889999974
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=81.21 E-value=1.2e+02 Score=35.59 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=61.5
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCc--eeeecCC-CCcEEEEEEcCCC-CEEEEEecCCCCceEEEEEecCCceeeEEE
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAP-GLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1091)
..++..++.+..+|.+....+..... ....-+. .....++++..+| .+++.++.. |++.+..|....-+.+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~--gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF--GDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS--S-EEEEEEESESEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec--CCcEEEEEeCCCcEEEEec
Confidence 45667888999999998887765442 1222222 3345566666555 466777664 4678888886666667666
Q ss_pred ecccccccceEEEEEcCC----CC------EEEEEe---CCCeEEEEE
Q 001367 572 QGLQLQHNSVSVVHFDTA----KD------QILAAG---DDHVIKIWD 606 (1091)
Q Consensus 572 ~~~~~~~~~v~~v~~~~~----~~------~l~~~s---~dg~i~iwd 606 (1091)
... ++|..+++.+. .. .+++++ .+|.+++..
T Consensus 297 ~N~----~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 297 PNW----GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp --------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred cCc----CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 654 47888777532 22 566654 567788774
|
... |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=81.19 E-value=32 Score=38.18 Aligned_cols=141 Identities=12% Similarity=0.199 Sum_probs=84.7
Q ss_pred CCcEEE-EEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCC--------CEEEEEeCCCcEEEEEcCCCceeeeee
Q 001367 854 DNNVIA-IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL--------NILVSSGGDAQIFVWDVDGWGIQTCRS 924 (1091)
Q Consensus 854 ~~~~la-~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg--------~~las~s~Dg~i~vwd~~~~~~~~~~~ 924 (1091)
+..+|. .|.....++--|+..|+.+..+.-|... -+.|.|+. +.|+-.|..+ |.--|-.-.. .....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~g-NKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARG-NKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEecccccC-Cceee
Confidence 555544 4555567888899999999999888774 46777753 3455444433 3333332211 00011
Q ss_pred eeccCCCcCCCCCceEEEEcC----CCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCC
Q 001367 925 LQTPDGVMTLAPSETHIQFHK----DQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 999 (1091)
Q Consensus 925 ~~~~~~~~~~~~~i~~l~fs~----dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg 999 (1091)
.+... ..+.-.||. ...++|+ +..|.|++||-- |..-...+++-...|..+..+.+|+++++.+. .
T Consensus 554 ~esKd-------Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~ 624 (776)
T COG5167 554 VESKD-------YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCK-N 624 (776)
T ss_pred eeehh-------ccccccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeec-c
Confidence 11110 122223333 3456666 677899999954 44444456666889999999999999887665 4
Q ss_pred cEEEEeCC
Q 001367 1000 TLSIHEAS 1007 (1091)
Q Consensus 1000 ~v~iwd~~ 1007 (1091)
++.+-|+.
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 67777765
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=81.02 E-value=1.2e+02 Score=35.64 Aligned_cols=151 Identities=8% Similarity=0.010 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-Cceeeee
Q 001367 845 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCR 923 (1091)
Q Consensus 845 i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~-~~~~~~~ 923 (1091)
..+++.++ ++..+|....++.++++... +.....+. ...++.-+|.++| .+-++-.+...++..... ++..
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~--- 407 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH--- 407 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---
Confidence 37889999 78888888778888887655 22222222 2347777888887 555554444455555433 2211
Q ss_pred eeeccCCCcCCCCCceEEEEcCCCCEEEEEe----cCeEEEEEcCC-cc---ee----eeeecCCccCEEEEEEeeCCCE
Q 001367 924 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEE-LT---CL----KQWFPISSVPISQATFSCDCRM 991 (1091)
Q Consensus 924 ~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~----d~~i~vwd~~~-~~---~~----~~~~~~h~~~v~~v~fs~dg~~ 991 (1091)
.+... .. ....|..+..|+||..+|.-. .++|.|--+.. +. .+ ..+..+ ...+.++.|..++..
T Consensus 408 ~v~v~-~~--~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~l 483 (557)
T PRK13615 408 PVAVS-WT--ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDV 483 (557)
T ss_pred Eeecc-cc--CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEE
Confidence 11111 11 113699999999999998732 25666543322 22 22 111112 348899999999987
Q ss_pred EEEEE---cCCcEEEEeCC
Q 001367 992 VFTSF---VDGTLSIHEAS 1007 (1091)
Q Consensus 992 l~t~~---~dg~v~iwd~~ 1007 (1091)
++.+. .+..+++..+.
T Consensus 484 aVl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 484 ATLTLAPDGERQVELHQVG 502 (557)
T ss_pred EEEeccCCCCceEEEEECC
Confidence 66552 23456666665
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=80.72 E-value=80 Score=34.40 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=53.9
Q ss_pred CCCEEEEEe-C-----CeEEEEEccCcee---EEEecCCC-C-CeEEEEEcCCCCcEEEEEeCC-----CeEEEEeccCc
Q 001367 812 NDAYLFSAS-G-----GVISLYIVMTFKT---ILTIMPPS-P-TATSLAFNPHDNNVIAIGMDD-----STILIYNARSS 875 (1091)
Q Consensus 812 dg~~la~~~-d-----g~i~iwd~~~~~~---~~~~~~~~-~-~i~~l~~s~~~~~~la~g~~d-----g~i~iwd~~~~ 875 (1091)
++++++.|+ + ..+..+|+.+.+- ...+..-. . .-.+++.. ++++.+.|+.. ..+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 555656654 2 3577777766542 12221111 1 11222222 56777777642 36888898876
Q ss_pred cee--eeeccccCCeEEEEECCCCCEEEEEeCCCc----EEEEEcCCCc
Q 001367 876 EVI--SKLEGHSKRVTGLVFSDALNILVSSGGDAQ----IFVWDVDGWG 918 (1091)
Q Consensus 876 ~~~--~~l~~h~~~V~~l~~spdg~~las~s~Dg~----i~vwd~~~~~ 918 (1091)
+-. ..+... ......+...++++.+.|+.++. +.+||.++.+
T Consensus 150 ~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 150 EWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 432 222211 12222333446778888877643 5678888755
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=80.46 E-value=1e+02 Score=36.56 Aligned_cols=190 Identities=9% Similarity=0.016 Sum_probs=99.1
Q ss_pred CeeEEEecCCCCEEEEEeC-C-eEEEEEccCcee----EEEecCCCCCeEEEEEcCCCCcEEEEEeC--CC--eEEEEec
Q 001367 803 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA 872 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~d-g-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~~la~g~~--dg--~i~iwd~ 872 (1091)
.+.+.++|+++..+|...+ + .+.+..+..+.. ..... .....+.-.|.+ ++ .+-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEcC
Confidence 6778999999999887763 3 466655433322 11111 123466667777 44 3333322 22 2555543
Q ss_pred cCcceeee-eccccC-CeEEEEECCCCCEEEEEeC---CCcEEEEEcCC---CceeeeeeeeccCCCcCCCCCceEEEEc
Q 001367 873 RSSEVISK-LEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFH 944 (1091)
Q Consensus 873 ~~~~~~~~-l~~h~~-~V~~l~~spdg~~las~s~---Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~fs 944 (1091)
+|+.... .....+ .|+.+..|+||..+|.... .+.|.|=-+.. +.......+....+. ..+.+++|.
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W~ 515 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSWA 515 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEEc
Confidence 4443210 112223 7999999999988776543 35566554433 221111111111121 248899999
Q ss_pred CCCCEEEEE--ecCe--EEEEEcCCcceeeeeecCCccCEEEEEEeeCCC-EEEEEEcCCcE
Q 001367 945 KDQTRFLLV--HETH--LAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 1001 (1091)
Q Consensus 945 ~dg~~la~~--~d~~--i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~-~l~t~~~dg~v 1001 (1091)
.++.+++.+ .++. +...++.....-.. ..+.-..+..|+-..+.. .++.+..++.|
T Consensus 516 ~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~-~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 516 GDSQLVVLGREEGGVQQARYVQVDGSTPPAS-APAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CCCEEEEEeccCCCCcceEEEecCCcCcccc-cccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 999988854 2323 44444442222111 112344566677766655 44442455554
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=80.25 E-value=1.2e+02 Score=35.09 Aligned_cols=192 Identities=12% Similarity=0.151 Sum_probs=90.7
Q ss_pred eEEEEe---eCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCc-
Q 001367 456 ISVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG- 531 (1091)
Q Consensus 456 ~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~- 531 (1091)
+++++. ...+...+.| ..|.....+......... |...++|.+++... +.+..+|+. ++...........
T Consensus 116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY 189 (477)
T ss_dssp EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence 355555 3455677777 556666555432222211 22345776665544 777777775 3333333333321
Q ss_pred --EEEEEEcCCCCEEEEEec---------CCCCceEEEEEecCCceeeEEEecccc------------------------
Q 001367 532 --CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL------------------------ 576 (1091)
Q Consensus 532 --i~~~~~s~d~~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~------------------------ 576 (1091)
=..+...|+|++|+.+.. .......|..+| .+|+.+..+.....
T Consensus 190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 235677899999887762 111123466667 77777665432210
Q ss_pred cccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCC-ceEEEcc------------------CCCE
Q 001367 577 QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPEN-PRICFNK------------------NGTL 636 (1091)
Q Consensus 577 ~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~------------------~~~~ 636 (1091)
.--.++++.+.+....|+..+ .-..|...|..+++....+..+.....- ....+.| -|++
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH 348 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH 348 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence 002378899988555555555 4558999999999988888655332111 1111111 2455
Q ss_pred EEEEECCC---eEEEEECCCC
Q 001367 637 LAVIANEN---RIKILETPES 654 (1091)
Q Consensus 637 l~~~~~dg---~i~iwd~~~~ 654 (1091)
-+.-..+| .|.++|-...
T Consensus 349 ~~~~~~~g~~~~l~vFDNg~~ 369 (477)
T PF05935_consen 349 TAHLIPDGPQGNLLVFDNGNG 369 (477)
T ss_dssp EEEE-TTS---SEEEEE--TT
T ss_pred ceEEcCCCCeEEEEEEECCCC
Confidence 56666667 7888876654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1091 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-12 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 7e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 9e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-09 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-09 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-09 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 9e-08 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 8e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 3e-07 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 4e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-06 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 7e-06 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 8e-05 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 1e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 9e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-04 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 6e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 7e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1091 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.86 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.86 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.84 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.83 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.83 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.79 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.77 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.77 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.76 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.72 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.71 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.69 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.68 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.66 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.65 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.62 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.62 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.6 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.6 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.59 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.56 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.56 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.56 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.55 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.55 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.55 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.54 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.54 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.53 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.53 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.53 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.52 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.52 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.51 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.49 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.49 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.49 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.47 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.46 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.44 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.42 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.4 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.37 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.36 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.35 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.34 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.3 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.29 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.28 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.28 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.28 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.27 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.27 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.25 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.23 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.22 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.2 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.18 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.17 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.16 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.14 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.13 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.13 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.13 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.09 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.08 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.07 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.06 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.05 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.05 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.04 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.02 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.02 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.97 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.91 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.91 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.87 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.85 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.84 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.83 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.82 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.81 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.78 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.77 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.72 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.7 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.67 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.66 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.62 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.61 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.57 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.55 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.54 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.5 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.48 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.46 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.45 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.42 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.42 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.39 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.38 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.38 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.38 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.36 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.36 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.33 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.31 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.31 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.3 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.3 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.29 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.24 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.22 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.2 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.19 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.19 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.19 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.18 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.14 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.14 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.05 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.93 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.93 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.9 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.87 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.86 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.84 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.82 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.78 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.73 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.68 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.66 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.62 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.56 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.54 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.51 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.49 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.47 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.44 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.36 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.29 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.28 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.24 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.23 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.21 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.2 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 97.17 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.13 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.12 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.95 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.9 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.88 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.77 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.76 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.72 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.66 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.59 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.57 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.5 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.45 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.43 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.35 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.25 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.15 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.14 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.97 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.97 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.68 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.51 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.32 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 95.2 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.13 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.12 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.97 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.92 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.26 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.16 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 93.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.84 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 92.32 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 92.12 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.98 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 91.01 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 90.12 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 89.8 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 88.99 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 87.41 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 85.19 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 83.64 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-69 Score=648.09 Aligned_cols=568 Identities=22% Similarity=0.338 Sum_probs=490.8
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
..+.|.||++.|+|++|||||+ +||+|+.|++|+|||. +++++.. +.+|...|++++|+
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fs 66 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFS 66 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEEC
T ss_pred EeeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEEC
Confidence 3467999999999999999998 6799999999999995 6766654 77999999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
|||++||+++.|++|+|||.. ++.+ ..+.+|...|.+++|+||++ +|++++.|+.+++|+.. ........+|.
T Consensus 67 pdg~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~ 139 (577)
T 2ymu_A 67 PDGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHS 139 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCS
T ss_pred CCCCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCC
Confidence 999999999999999999964 4433 36889999999999999999 89999999999999955 45566778899
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
..+..+.+.+ ++..+++++.++.+++|+... ........+...+.++.++|+++++++++. ++.|++||. ++
T Consensus 140 ~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~ 211 (577)
T 2ymu_A 140 SSVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NG 211 (577)
T ss_dssp SCEEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TS
T ss_pred Cceeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CC
Confidence 9999998854 667899999999999998543 445556677889999999999999999986 667999995 56
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCe
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1091)
+.+..+.+|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+.. .|.+++|+|+++.+++++.|+.
T Consensus 212 ~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~--~v~~v~~~~d~~~l~~~~~d~~ 285 (577)
T 2ymu_A 212 QLLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVNGVAFRPDGQTIASASDDKT 285 (577)
T ss_dssp CEEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSC
T ss_pred cEEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCC--CEEEEEEcCCCCEEEEEeCCCE
Confidence 7778888877 89999999999999999999999999996 4667777766544 7899999999999999999999
Q ss_pred EEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCccccee
Q 001367 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 725 (1091)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 725 (1091)
|++|+.. ++....+.+|...|.++++ +|+++.+++++.|+++++|+.... ....
T Consensus 286 i~~w~~~-~~~~~~~~~h~~~v~~~~~---------------------~~~~~~l~t~~~d~~i~~w~~~~~---~~~~- 339 (577)
T 2ymu_A 286 VKLWNRN-GQLLQTLTGHSSSVWGVAF---------------------SPDGQTIASASDDKTVKLWNRNGQ---HLQT- 339 (577)
T ss_dssp EEEEETT-SCEEEEECCCSSCEEEEEE---------------------CTTSSEEEEEETTSCEEEEETTSC---EEEE-
T ss_pred EEEEeCC-CcEEEEEecCCCCeEEEEE---------------------CCCCCEEEEEeCCCeEEEEeCCCC---eeEE-
Confidence 9999964 5677788899999999998 788899999999999999997532 1111
Q ss_pred ecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCee
Q 001367 726 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 805 (1091)
Q Consensus 726 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 805 (1091)
+ .+|...+.+++|+|+|+.+++++.+|.+++|+... ..+.... +|...|.
T Consensus 340 -~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~~~----~~~~~v~ 389 (577)
T 2ymu_A 340 -L--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQTLT----GHSSSVR 389 (577)
T ss_dssp -E--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEEEE----CCSSCEE
T ss_pred -E--eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEEec----CCCCCeE
Confidence 1 34788999999999999999999999999998432 1122211 4888999
Q ss_pred EEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccc
Q 001367 806 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 884 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 884 (1091)
+++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|
T Consensus 390 ~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~ 466 (577)
T 2ymu_A 390 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGH 466 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC
Confidence 999999999999998 799999995 6788888999999999999999 8999999999999999996 56788899999
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEc
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA 963 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~ 963 (1091)
...|++++|+||+++||+++.|+.|++||... ..++.+.+|.. .|.+++|+|||++||+ +.|+.|++||.
T Consensus 467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~~~------~~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTS------CEEEEEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC------CEEEEEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 99999999999999999999999999999654 23455566665 7999999999999998 57899999996
Q ss_pred CCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 964 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 964 ~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
+++++.. +.+|...|++++|+|||++|+|++.||+|++||
T Consensus 538 -~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 -NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 5777766 568999999999999999999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-67 Score=628.70 Aligned_cols=565 Identities=21% Similarity=0.312 Sum_probs=484.7
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
.|.||++.|++++|||||++||+|+.|++|+|||. +++.++ .+.+|.+.|++++|+||++ +|++++.|++|+||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~---~l~gh~~~V~~l~fspdg~--~las~~~d~~i~vW 84 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLW 84 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE---EEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEE---EEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEEE
Confidence 48899999999999999999999999999999995 555443 7889999999999999999 89999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
| .+++++..+.+|...|.+++|+ +++.+|++++.|+.+++|+... ........+...+..+.++|++..++.++.
T Consensus 85 d-~~~~~~~~~~~~~~~v~~~~~s--~d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~- 159 (577)
T 2ymu_A 85 N-RNGQLLQTLTGHSSSVRGVAFS--PDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD- 159 (577)
T ss_dssp E-TTSCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEET-
T ss_pred E-CCCCEEEEEECCCCCEEEEEEC--CCCCEEEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeecCCccceeccc-
Confidence 9 5688899999999999999995 4778999999999999999654 445566777889999999999999998875
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
+..+.+|+.... .......+. ..+.++.++|+++++++++.|+.|++||. +++.+..+..+.. .|.+++|
T Consensus 160 ---~~~~~~~~~~~~-~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~--~v~~~~~ 229 (577)
T 2ymu_A 160 ---DKTVKLWNRNGQ-LLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVRGVAF 229 (577)
T ss_dssp ---TSEEEEECTTSC-EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS--CEEEEEE
T ss_pred ---ccceecccccee-eeeeccCCC---cceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCC--CEEEEEE
Confidence 566888986544 444555555 78999999999999999999999999996 5677777776654 6899999
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
+|++++|++++.|+.|++|+.. ++.+..+.+|...|.+++| +|+++.+++++.|+.++
T Consensus 230 s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~---------------------~~d~~~l~~~~~d~~i~ 287 (577)
T 2ymu_A 230 SPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAF---------------------RPDGQTIASASDDKTVK 287 (577)
T ss_dssp CTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEE---------------------CTTSSEEEEEETTSCEE
T ss_pred CCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEE---------------------cCCCCEEEEEeCCCEEE
Confidence 9999999999999999999964 5677788899999999998 78889999999999999
Q ss_pred cccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCce
Q 001367 711 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 790 (1091)
Q Consensus 711 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1091)
+|+.... ... ...+|...|.+++|+|+++.+++++.||.+++|+..... +
T Consensus 288 ~w~~~~~---~~~----~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------~ 337 (577)
T 2ymu_A 288 LWNRNGQ---LLQ----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------L 337 (577)
T ss_dssp EEETTSC---EEE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------E
T ss_pred EEeCCCc---EEE----EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------e
Confidence 9996421 111 113588899999999999999999999999999864321 1
Q ss_pred eeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001367 791 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 869 (1091)
Q Consensus 791 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~i 869 (1091)
... .+|...+.+++|+|+|+++++++ ++.|++||. +++.+..+..|...|++++|+| ++++|++++.|+.|++
T Consensus 338 ~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 338 QTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKL 411 (577)
T ss_dssp EEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEE
T ss_pred EEE----eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEE
Confidence 111 14788999999999999999998 799999995 6788888999999999999999 8999999999999999
Q ss_pred EeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCE
Q 001367 870 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 949 (1091)
Q Consensus 870 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 949 (1091)
||. +++.+..+.+|...|++++|+||+++|++++.|++|++||.... .+..+.+|.. .|.+++|+||+++
T Consensus 412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~~ 481 (577)
T 2ymu_A 412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQT 481 (577)
T ss_dssp ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSCE
T ss_pred EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCCE
Confidence 995 57888899999999999999999999999999999999997652 3344455554 7999999999999
Q ss_pred EEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCccc
Q 001367 950 FLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCL 1028 (1091)
Q Consensus 950 la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1091)
|++ +.|+.|++||. +++++.. +.+|...|++++|+|||++|++++.||.|++||. +++.+..+. .|..
T Consensus 482 las~~~d~~i~iw~~-~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--------~h~~ 550 (577)
T 2ymu_A 482 IASASDDKTVKLWNR-NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHSS 550 (577)
T ss_dssp EEEEETTSEEEEEET-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCSS
T ss_pred EEEEeCCCEEEEEcC-CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--------CCCC
Confidence 999 57899999995 5777766 5689999999999999999999999999999996 566665554 2455
Q ss_pred ccceeEEEeCCCCCCeEEEEecCCcEEEEe
Q 001367 1029 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1058 (1091)
Q Consensus 1029 ~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~ 1058 (1091)
.|. +++|+| |+++|++++.||+|++||
T Consensus 551 ~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 551 SVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 565 578999 589999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-66 Score=626.67 Aligned_cols=577 Identities=15% Similarity=0.182 Sum_probs=477.4
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.+.+.+.+++|||||+ +||+++ +++|+||++.+++.... +.+|...|++++|||||++|
T Consensus 16 ~~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~l 74 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC 74 (611)
T ss_dssp CCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEE
Confidence 4567889999999998 567776 57999999998876654 78999999999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC----CcEEEEeCCCCceeEEecCCCcc
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
|+|+.|++|+|||+.+++... ...+.+|.++|.+++|+|||+ .|++++.+ +.|++|| +++....+.+|...
T Consensus 75 asg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~ 149 (611)
T 1nr0_A 75 ASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA 149 (611)
T ss_dssp EEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred EEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence 999999999999997655332 236789999999999999999 67777754 3677776 56777889999999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
|.+++|+|.. ...|++++.|++|++||..+.+....+..|...|.+++|+|+|++|++++. ++.|++||..+++.
T Consensus 150 v~~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 150 MNSVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTK 224 (611)
T ss_dssp EEEEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCE
T ss_pred ceEEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcE
Confidence 9999996642 136999999999999999888878889999999999999999999999986 66799999999998
Q ss_pred eEEEe-------cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC-CCCceEEEccCCCEEEE
Q 001367 568 KRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAV 639 (1091)
Q Consensus 568 ~~~~~-------~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~ 639 (1091)
+..+. +|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| ++..+++
T Consensus 225 ~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s 299 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVS 299 (611)
T ss_dssp EEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEE
T ss_pred eeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEE
Confidence 88774 455 89999999999999999999999999999999998888754221 12334455 6889999
Q ss_pred EECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCC
Q 001367 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARP 719 (1091)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~ 719 (1091)
++.|+.+++|+...+.....+.+|...|.+++| +|+++.+++++.|++|++||+.....
T Consensus 300 ~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~---------------------spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSS---------------------SADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp EETTCCEEEEETTTTEEEEEECCCSSCEEEEEE---------------------CTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE---------------------eCCCCEEEEEeCCCcEEEEECCCCce
Confidence 999999999999988888888899999999999 88899999999999999999874322
Q ss_pred cccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCC
Q 001367 720 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 799 (1091)
Q Consensus 720 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1091)
. .....+|...|.+++|++++ .+++++.|+.+++|+......... . .....
T Consensus 359 ~-----~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~-~~~~~----- 409 (611)
T 1nr0_A 359 N-----RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------K-AVANK----- 409 (611)
T ss_dssp E-----ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------S-CCEEE-----
T ss_pred e-----eecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------c-eeeee-----
Confidence 1 12224588999999999877 488999999999999764321000 0 00001
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce--
Q 001367 800 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-- 877 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~-- 877 (1091)
......+++++|+|+.++++.++.+++|+ .++ +..+. +...+.+++|+| ++++||+|+.|++|++||+.+++.
T Consensus 410 ~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~ 484 (611)
T 1nr0_A 410 LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSE 484 (611)
T ss_dssp CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEE
T ss_pred cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceee
Confidence 23356789999999999888899999998 344 45554 778899999999 899999999999999999987653
Q ss_pred eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-Eec
Q 001367 878 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE 955 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d 955 (1091)
+.. .+|...|++++|||||++||+++.|++|++|++.+ ++... .....+|.. .|.+++|||||++||+ +.|
T Consensus 485 ~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~---~V~~v~fspdg~~lasgs~D 557 (611)
T 1nr0_A 485 VKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTA---KVACVSWSPDNVRLATGSLD 557 (611)
T ss_dssp EEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSS---CEEEEEECTTSSEEEEEETT
T ss_pred eec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeeccc---ceeEEEECCCCCEEEEEECC
Confidence 234 67999999999999999999999999999999987 33211 111233554 8999999999999999 588
Q ss_pred CeEEEEEcCCcceee-eeecCC-ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 956 THLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~-~~~~~h-~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
++|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 558 ~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 558 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999999999876433 456789 89999999999998 9999999999999973
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-63 Score=595.47 Aligned_cols=567 Identities=12% Similarity=0.146 Sum_probs=457.4
Q ss_pred cCCCCCCcchhhhcccccCCcccCCCc-hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeece
Q 001367 297 IPDYSPKSSLKKEMFQSFGETSFSDFP-KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 375 (1091)
Q Consensus 297 ~~~fsP~~~~~~~~~~~~~~~~~~~~p-~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~ 375 (1091)
...|+|++..+..-. .....+.++. ....++|.+|.+.|++++|||||+ +||+|+.||+|+|||+.+++....
T Consensus 23 ~~~~spdg~~l~~~~--~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~--- 96 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK--- 96 (611)
T ss_dssp CCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE---
T ss_pred EEeeCCCCCEEEeCC--CCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee---
Confidence 456888876654322 1112222222 456778999999999999999998 679999999999999987654321
Q ss_pred eEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcC
Q 001367 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451 (1091)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 451 (1091)
..+.+|...|.+++|+|||++||+++.+ +.|++|| +++... .+.+|...|.+++|+|
T Consensus 97 --------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 97 --------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKP 157 (611)
T ss_dssp --------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECS
T ss_pred --------------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECC
Confidence 1166899999999999999999999865 4788887 444443 5789999999999999
Q ss_pred CCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-----
Q 001367 452 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD----- 526 (1091)
Q Consensus 452 d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----- 526 (1091)
++.. .|++++.|++|++||..+++++..+.+|...|.+++|+| ++.+|++++.|++|++||+.+++....+.
T Consensus 158 ~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 158 SRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234 (611)
T ss_dssp SSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred CCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeecccccc
Confidence 9874 599999999999999999999999999999999999955 67899999999999999999888777663
Q ss_pred --CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEE
Q 001367 527 --APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1091)
Q Consensus 527 --~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~i 604 (1091)
.|...|.+++|+|++++|++++. ++.|++||+.+++.+..+..+......+..+.| +++.+++++.|+.+++
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINF 308 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEE
T ss_pred ccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEE
Confidence 68889999999999999999986 678999999999998888755433345666667 6788999999999999
Q ss_pred EECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccc-ccccccceeeeeccccccccccc
Q 001367 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGI 683 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~ 683 (1091)
|+..+++....+..|.. .|.+++|+|++++|++++.|++|++||+.++.....+ .+|...+.++++
T Consensus 309 ~~~~~~~~~~~~~gh~~--~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~----------- 375 (611)
T 1nr0_A 309 VNPELGSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT----------- 375 (611)
T ss_dssp EETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE-----------
T ss_pred EeCCCCCcceEEcCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEE-----------
Confidence 99999988877776654 7999999999999999999999999999998776655 578888999988
Q ss_pred cCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecC
Q 001367 684 ANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 763 (1091)
Q Consensus 684 ~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~ 763 (1091)
+++ ..+++++.|+++++|+.............. ........++++|+|+.++++ .++.+++|+-.
T Consensus 376 ----------s~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~~~ 440 (611)
T 1nr0_A 376 ----------TSK-GDLFTVSWDDHLKVVPAGGSGVDSSKAVAN---KLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHG 440 (611)
T ss_dssp ----------CTT-SCEEEEETTTEEEEECSSSSSSCTTSCCEE---ECSSCEEEEEECTTSSCEEEE-ESSEEEEEETT
T ss_pred ----------CCC-CcEEEEEcCCceEEeecCCccccccceeee---ecCCCCcEEEEeCCCcEEEEE-eCceEEEEeCC
Confidence 443 367889999999999976433221111100 122346789999999877666 56788888621
Q ss_pred CcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCcee--EEEecC
Q 001367 764 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMP 840 (1091)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~--~~~~~~ 840 (1091)
. +... .+...+.+++|+|||++||+++ |++|++||+.++.. ... ..
T Consensus 441 ~-------------------------~~~~-----~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~ 489 (611)
T 1nr0_A 441 K-------------------------LTEV-----PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IV 489 (611)
T ss_dssp E-------------------------EEEE-----ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EE
T ss_pred c-------------------------eeee-----ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cC
Confidence 0 1111 1566799999999999999998 79999999987654 234 56
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC-cceeee--eccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001367 841 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISK--LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 917 (1091)
Q Consensus 841 ~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~-~~~~~~--l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~ 917 (1091)
|...|++++|+| ++++|++++.|++|++|++.+ ++.+.. +.+|.+.|.+++|+|||++|||++.|++|++||+.++
T Consensus 490 h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 490 HPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred CCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 889999999999 899999999999999999988 665544 3459999999999999999999999999999999875
Q ss_pred ceeeeeeeeccCCC-cCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcC
Q 001367 918 GIQTCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAE 964 (1091)
Q Consensus 918 ~~~~~~~~~~~~~~-~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~ 964 (1091)
... .+....+| .. .|.+++|+||++ |++ +.|++|++|++.
T Consensus 569 ~~~---~~~~~~~h~~~---~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 569 SDH---PIIIKGAHAMS---SVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TSC---CEEETTSSTTS---CEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ccc---cchhhccCccc---CeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 421 12445666 44 799999999999 766 789999999973
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-64 Score=659.02 Aligned_cols=608 Identities=15% Similarity=0.191 Sum_probs=500.7
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
...++.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s 666 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFS 666 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEe
Confidence 3456789999999999999998 679999999999999999987765 77899999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
|||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++...++++++.|+.|++||+.+++++..+.+|.
T Consensus 667 ~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 667 SDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743 (1249)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred cCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence 999999999999999999999987555 67899999999999997655589999999999999999999999999999
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC-------------CCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------------PGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
..|.+++|++ ++.++++++.||.|++||+.+......+.. ....+.+++|+|+|+.+++++
T Consensus 744 ~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---- 817 (1249)
T 3sfz_A 744 NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA---- 817 (1249)
T ss_dssp SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----
T ss_pred CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----
Confidence 9999999965 667999999999999999988766554432 123678899999999999986
Q ss_pred CceEEEEEecCCceeeEEEe-cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 553 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
++.+.+||..++.....+. +|. ..+.+++|+|+++++++++.||.|++||+.++..+..+..+.. .|.+++|+
T Consensus 818 -~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~s 891 (1249)
T 3sfz_A 818 -KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFS 891 (1249)
T ss_dssp -TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEEC
T ss_pred -CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEEC
Confidence 4569999999998887776 444 8999999999999999999999999999999999998887654 79999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCCeecccccc--------cccceeeeeccccccccc--------cccCCcccCCCCCC
Q 001367 632 KNGTLLAVIANENRIKILETPESNSVDAAGVL--------SDNLRKLSVNPISTVTGA--------GIANGSVSNEDPKE 695 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~--------~~~~g~~~~~~~s~ 695 (1091)
|+++++++++.||.|++|++.+.......... ......+........... ....+.+....++|
T Consensus 892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 971 (1249)
T 3sfz_A 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence 99999999999999999997642111100000 000000000000000000 00011222233389
Q ss_pred CCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceee
Q 001367 696 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 775 (1091)
Q Consensus 696 ~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 775 (1091)
+++.+++++.+|.|++|++....... ...+|...|.+++|+|+|+.+++++.||.+++|++.....
T Consensus 972 ~g~~l~~g~~~g~i~i~d~~~~~~~~------~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~-------- 1037 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIELPNNRVFS------SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-------- 1037 (1249)
T ss_dssp TSSEEEEEETTSCCEEEETTTTSCEE------ECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE--------
T ss_pred CCCEEEEEcCCCCEEEEEcCCCceee------ecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce--------
Confidence 99999999999999999987443211 1235888999999999999999999999999999764321
Q ss_pred ccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCC
Q 001367 776 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 855 (1091)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 855 (1091)
.. . .+|...+.+++++|++.+++.+.|+.|++||+.+++....+.+|...|++++|+| ++
T Consensus 1038 --------------~~---~--~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~ 1097 (1249)
T 3sfz_A 1038 --------------VF---L--QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DA 1097 (1249)
T ss_dssp --------------EC---C--BCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECS-SS
T ss_pred --------------EE---E--ecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECC-CC
Confidence 10 1 1488899999999988777666699999999999999999999999999999999 89
Q ss_pred cEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee-ee---eccCCC
Q 001367 856 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR-SL---QTPDGV 931 (1091)
Q Consensus 856 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~-~~---~~~~~~ 931 (1091)
+++++++.||+|++||+.+++.+..+.+|.+.|++++|+|||++||+++.||.|++||+.+++..... .. ....+|
T Consensus 1098 ~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1177 (1249)
T 3sfz_A 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177 (1249)
T ss_dssp SSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------C
T ss_pred CEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999987643211 01 111233
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 932 MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 932 ~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
. ..|.+++|+|||++|+++. |.|++||+.+++.+.. +.+|...|.+++|+|||++|++++.||.|++|++.
T Consensus 1178 ~---~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1178 G---GWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQT-FYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp C---SCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCC-CCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred C---ceEEEEEECCCCCEEEECC-CeEEEEECCCCceeee-eeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 3 3799999999999999875 8999999999998877 45678899999999999999999999999999974
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-60 Score=579.58 Aligned_cols=558 Identities=11% Similarity=0.158 Sum_probs=484.1
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCC----CceeeeceeEEeccccccceeeeeecCCCcc-EEEEEEC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS 405 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~s 405 (1091)
..|.+.|.+++|||||+ ++|+++ ++.|+|||+.++ +.+.. +.+|... |++++|+
T Consensus 15 ~~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS 73 (615)
T ss_dssp CCCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred CCccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence 36888999999999999 557776 789999999988 65543 7789999 9999999
Q ss_pred C--CCCEEEEEECCCEEEEEEeeCCc-----ccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC----CcEEEEeCCC
Q 001367 406 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT 474 (1091)
Q Consensus 406 p--dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~ 474 (1091)
| ++++||+|+.||.|++||+.+++ .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| +
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence 9 99999999999999999998651 1223346778999999999999999 78888877 6888888 6
Q ss_pred CceeEEecCCCcceEEEeecccCCce-EEEEEecCCeEEEEecCCCCceeeecCCCC---cEEEEEEcCC-CCEEEEEec
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT 549 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~d-~~~l~~~~~ 549 (1091)
++.+..+.+|...|.+++|++ ++. .+++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 778899999999999999965 444 899999999999999999888888888888 9999999999 999999986
Q ss_pred CCCCceEEEEEecCCceeeEEE-e---cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC--CC
Q 001367 550 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP 623 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~ 623 (1091)
++.|++||+.+++.+..+ . .|. ..|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.. ..
T Consensus 228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 566999999999998888 5 555 899999999 999999999999999999999999988886631 12
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
.+.++.|+ +++++++++.+|.|++||+.+++.+..+.+|...|.++++ | . ++++
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~-------------------~-----l~~~ 353 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N-------------------P-----LISG 353 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T-------------------T-----TEEE
T ss_pred ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-c-------------------C-----cEEE
Confidence 45677775 8999999999999999999999888899999999998887 4 2 7889
Q ss_pred ccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCcccc
Q 001367 704 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 783 (1091)
Q Consensus 704 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 783 (1091)
+.|+.|++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++....
T Consensus 354 ~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~----------------- 404 (615)
T 1pgu_A 354 SYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE----------------- 404 (615)
T ss_dssp ETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE-----------------
T ss_pred CCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc-----------------
Confidence 999999999986 122 458899999999 667789999999999999865322
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 001367 784 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 863 (1091)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~ 863 (1091)
....+.+++++|++.+++++.++.+.+|++.+++.+..+. +...+.+++|+ +++|++++.
T Consensus 405 ----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~ 464 (615)
T 1pgu_A 405 ----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLE 464 (615)
T ss_dssp ----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEET
T ss_pred ----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeec
Confidence 1226788999999999999888999999999999988887 78899999998 579999999
Q ss_pred -CCeEEEEeccCccee-eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCC-CcCCCCCceE
Q 001367 864 -DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETH 940 (1091)
Q Consensus 864 -dg~i~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 940 (1091)
||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++ .+....+ |.. .|.+
T Consensus 465 ~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~~---~v~~ 536 (615)
T 1pgu_A 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTS---KINA 536 (615)
T ss_dssp TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSS---CEEE
T ss_pred CCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCCC---ceeE
Confidence 999999999988766 7788899999999999999999999999999999999865 3444454 554 8999
Q ss_pred EEEcC----------CCCEEEE-EecCeEEEEEcCCc-ceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 941 IQFHK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 941 l~fs~----------dg~~la~-~~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
++|+| ++++|++ +.|+.|++||+.++ +.+.. +.+|...|++++|+|||+ |++++.||+|++|++.+
T Consensus 537 ~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 537 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999 9999999 57899999999998 45544 678999999999999999 99999999999999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-61 Score=637.22 Aligned_cols=589 Identities=16% Similarity=0.193 Sum_probs=504.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
.+.+|...|++++|+|||++||+|+.||+|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 377899999999999999999999999999999999987554 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
|+.+++.+..+.+|...|.+++|++..++.++++++.||.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9999999999999999999999988777889999999999999999999999999999999999999999999999986
Q ss_pred CCCceEEEEEecCCceeeEEEeccc----------ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1091)
++.|++||+.+++....+.... .....+.+++|+|+++.+++++ ++.+.+||+.++..+..+....
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSS
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCC
Confidence 6779999999998777664321 0123688899999999999887 6899999999999888776322
Q ss_pred CCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcc
Q 001367 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPE 700 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l 700 (1091)
...+.+++|+|+++++++++.+|.|++|++.++..+..+.+|...|.+++| +|+++.+
T Consensus 840 -~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~---------------------spdg~~l 897 (1249)
T 3sfz_A 840 -HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF---------------------SPDGSSF 897 (1249)
T ss_dssp -SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE---------------------CTTSSEE
T ss_pred -CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEE---------------------CCCCCEE
Confidence 347899999999999999999999999999999999999999999999999 7888999
Q ss_pred cccccccccccccccccCCcccce---------------------------eecC----CccccccEEEEEEecCCCeEE
Q 001367 701 ISVEAENKSEVEKPLFARPSECQS---------------------------LLLP----SKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 701 ~s~~~d~~i~~w~~~~~~~~~~~~---------------------------~~~~----~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
++++.|+.+++|+........... .... .......+.+++++|+++.++
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 977 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 977 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEE
T ss_pred EEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEE
Confidence 999999999999965321100000 0000 011345789999999999999
Q ss_pred EeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEE
Q 001367 750 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYI 828 (1091)
Q Consensus 750 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd 828 (1091)
+++.+|.+.+|++..... ... + .+|...|.+++|+|+|+++++++ ||.|++||
T Consensus 978 ~g~~~g~i~i~d~~~~~~----------------------~~~--~--~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 978 FGDEDGAIKIIELPNNRV----------------------FSS--G--VGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp EEETTSCCEEEETTTTSC----------------------EEE--C--CCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred EEcCCCCEEEEEcCCCce----------------------eee--c--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999999999999754321 221 1 14889999999999999999998 79999999
Q ss_pred ccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCc
Q 001367 829 VMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 908 (1091)
Q Consensus 829 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~ 908 (1091)
+.+++... +..|...+.+++|+| ++ .+++++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++
T Consensus 1032 ~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~ 1108 (1249)
T 3sfz_A 1032 WQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1108 (1249)
T ss_dssp TTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSC
T ss_pred CCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCc
Confidence 99988764 457889999999999 66 5678999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeee--------ecCCccC
Q 001367 909 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW--------FPISSVP 979 (1091)
Q Consensus 909 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~--------~~~h~~~ 979 (1091)
|++||+.++. .+....+|.. .|.+++|+|||++|++ +.||.|++||+.+++.+..+ ..+|...
T Consensus 1109 v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1180 (1249)
T 3sfz_A 1109 AKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1180 (1249)
T ss_dssp CCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSC
T ss_pred EEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCce
Confidence 9999999855 4555666665 7999999999999999 57899999999999887664 2568899
Q ss_pred EEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 980 ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 980 v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
|++++|+|||++|++++ |.|++||+.+++.+..+. .|...|. +++|+| |+.+|++++.||.|++|++
T Consensus 1181 v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~--------~~~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1181 VTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY--------TNGTNLK--KIHVSP-DFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp CCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC--------CSSCCCC--CCEECS-SSCCEEEECTTCCEEEECC
T ss_pred EEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee--------ccCCccc--EEEECC-CCCEEEEecCCcEEEEEee
Confidence 99999999999999875 899999999998765443 1233444 467899 5899999999999999998
Q ss_pred CC
Q 001367 1060 NE 1061 (1091)
Q Consensus 1060 ~~ 1061 (1091)
.+
T Consensus 1248 ~e 1249 (1249)
T 3sfz_A 1248 LE 1249 (1249)
T ss_dssp CC
T ss_pred cC
Confidence 53
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-57 Score=564.48 Aligned_cols=636 Identities=11% Similarity=0.082 Sum_probs=465.1
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
...+|.+.|++++|+|||+ +||+|+.||+|+||+..+++... ...|...|.+++|+| |
T Consensus 12 ~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-g 69 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-G 69 (902)
T ss_dssp EEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-T
T ss_pred cccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-C
Confidence 3458999999999999998 78999999999999988766543 224788999999999 8
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee----------
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---------- 478 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---------- 478 (1091)
++||+++.|++|+|||+.+++.+. .+. |...|++++|+|+++ ++++|+.||.|++||+.++++.
T Consensus 70 ~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 70 IYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp TEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred CEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 899999999999999999987654 343 678899999999999 8999999999999999988764
Q ss_pred -EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC------------------CCcEEEEEEcC
Q 001367 479 -YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSA 539 (1091)
Q Consensus 479 -~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~s~ 539 (1091)
..+.+|.++|.+++|+|. ++..+++++.||.| +||+++.+....+..+ ...|.+++|+|
T Consensus 144 ~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp HTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred ccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 234679999999999764 34689999999999 9999988777666554 46799999999
Q ss_pred CCCEEEEEecCCCCceEEEEEecCCceeeEE--Ee---ccc----------ccccceEEEEEc----CCC-CEEEEEeCC
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGDD 599 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~v~~~----~~~-~~l~~~s~d 599 (1091)
+|++|++++. ++.|++||+.+++.+.. +. .|. .+...|.+++|+ |++ ..+++|+.+
T Consensus 222 dg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 222 NSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 9999999986 66799999999887654 21 121 123579999995 444 456667665
Q ss_pred -----CeEEEEECC------------------CCeeEEEEeCCCCCCCCceEEEcc----------CCCEEEEEECCCeE
Q 001367 600 -----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRI 646 (1091)
Q Consensus 600 -----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~i 646 (1091)
+.+.+|++. +.+....+.... ...+..+.+.+ +...+++++.||.|
T Consensus 298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPT-NVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSS-SSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCC-CCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence 378899842 223334443211 13567777655 34578999999999
Q ss_pred EEEECCCCCeec-------ccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCC
Q 001367 647 KILETPESNSVD-------AAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARP 719 (1091)
Q Consensus 647 ~iwd~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~ 719 (1091)
++|++.++.... .+..|...|+++++++. ..++|+......
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~--------------------------------~~~~w~~~~~~~ 424 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV--------------------------------PNKLWLGALSAA 424 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE--------------------------------EHHHHHHHHHTT
T ss_pred EEEECCCCCcccccccCCCcccccCCCeeEEEEEEc--------------------------------CHHHHHHHHhcc
Confidence 999998774332 24455567777776431 123344221110
Q ss_pred cccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCC
Q 001367 720 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 799 (1091)
Q Consensus 720 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1091)
... ..+..+|...+.+++|+|+++.+++++.|++|++||+....... ..++... .. .....+
T Consensus 425 ~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~~~~-----l~-~~~~~~ 486 (902)
T 2oaj_A 425 QNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASFEVN-----LS-RTLNKA 486 (902)
T ss_dssp BCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCEEEE-----HH-HHTTCS
T ss_pred cCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------CceEEee-----ch-hhcCCC
Confidence 000 11224567778889999999999999999999999987642200 0000000 00 000125
Q ss_pred CCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCc---------------------------------------------e
Q 001367 800 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF---------------------------------------------K 833 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~---------------------------------------------~ 833 (1091)
|...|.+++|+|||++||+++ ||+|+|||+.++ +
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 889999999999999999998 799999999876 2
Q ss_pred eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceee-----eec-cccCCeEEEEEC-----CCC---CE
Q 001367 834 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---NI 899 (1091)
Q Consensus 834 ~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----pdg---~~ 899 (1091)
++..+.+|...|++++||| +| +||+|+.|++|+|||+.++..+. .+. +|.+.|++++|| ||| ++
T Consensus 567 ~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~ 644 (902)
T 2oaj_A 567 PSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL 644 (902)
T ss_dssp EEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred eeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceE
Confidence 4677888999999999999 88 99999999999999998876543 343 899999999999 886 89
Q ss_pred EEEEeCCCcEEEEEc---CCCceeeeeeeeccCCCcC--CCCCceEEE-Ec----------------------CCCCEEE
Q 001367 900 LVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KDQTRFL 951 (1091)
Q Consensus 900 las~s~Dg~i~vwd~---~~~~~~~~~~~~~~~~~~~--~~~~i~~l~-fs----------------------~dg~~la 951 (1091)
|++++.|++|++||+ .+++.. ..+.+|.. ....|..++ |+ ++|..|+
T Consensus 645 l~sgs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~ 719 (902)
T 2oaj_A 645 MVCGTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLI 719 (902)
T ss_dssp EEEEETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEE
T ss_pred EEEEecCCcEEEEEEecCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEE
Confidence 999999999999999 565532 22222221 012566665 65 4555555
Q ss_pred EEecCeEEEEEcCCcceeeeeecCCccCEEEE---E------EeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccC
Q 001367 952 LVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLR 1022 (1091)
Q Consensus 952 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v---~------fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 1022 (1091)
+ .+..++||++.++++.... .+|...+.++ . |+++|..|++++.||+|++|++++++.+..........
T Consensus 720 ~-~~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~ 797 (902)
T 2oaj_A 720 T-GFDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIA 797 (902)
T ss_dssp E-CSSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred E-eccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCcccc
Confidence 4 4889999999999998876 4556666776 6 78999999999999999999999999988776322111
Q ss_pred CCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCCCc
Q 001367 1023 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1066 (1091)
Q Consensus 1023 ~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~~ 1066 (1091)
...+. ..++++. |..|.-.+ ...+.+..+-..+...
T Consensus 798 ----~~~~~--~~~~~~~-G~~~~~~~-~~e~~~~~~~~~~~~~ 833 (902)
T 2oaj_A 798 ----AKYIT--ESSVLRN-GDIAIRVS-EFQASLFSTVKEQDTL 833 (902)
T ss_dssp ----HHHHT--TCEECTT-SCEEEECS-SSEEEEEEEESCCCCC
T ss_pred ----ccccc--ceEEcCC-CCEEEEeC-hhheEEEEEEcCCCCC
Confidence 11122 2356663 56554443 3455555554444333
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-57 Score=548.81 Aligned_cols=554 Identities=11% Similarity=0.110 Sum_probs=467.3
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCC----cccceeEEEeccccC-eeEEEEcC--CCCceEEEEeeCCC
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDDK 465 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~~~~s~--d~~~~~l~s~~~d~ 465 (1091)
..|.+.|.+++|+|||++||+++ ++.|++||+.++ +... .+.+|... |.+++|+| +++ +|++++.||
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 45889999999999999999998 789999999987 4433 68899999 99999999 999 899999999
Q ss_pred cEEEEeCCCC--------ceeEEecCCCcceEEEeecccCCceEEEEEecC----CeEEEEecCCCCceeeecCCCCcEE
Q 001367 466 TIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCT 533 (1091)
Q Consensus 466 ~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~ 533 (1091)
.|++||+.++ +.+..+..|...|.+++|+ +++.++++++.+ +.|++|| ..+....+..+...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD--FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC--TTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEe--CCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 9999999755 6778888999999999995 467899999988 6888887 5667778888999999
Q ss_pred EEEEcCCCC-EEEEEecCCCCceEEEEEecCCceeeEEEeccccccc---ceEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 001367 534 RMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 534 ~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~v~~~~~-~~~l~~~s~dg~i~iwd~~ 608 (1091)
+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+.
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 999999998 6788775 6779999999999999999887 6 8999999999 9999999999999999999
Q ss_pred CCeeEEEE-e---CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccccc----ccceeeeecccccccc
Q 001367 609 KVQLLTTI-D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTG 680 (1091)
Q Consensus 609 ~~~~~~~~-~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~ 680 (1091)
+++.+..+ . .+. ..|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 238 ~~~~~~~~~~~~~~~~--~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 306 (615)
T 1pgu_A 238 SGEFLKYIEDDQEPVQ--GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-------- 306 (615)
T ss_dssp TCCEEEECCBTTBCCC--SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE--------
T ss_pred CCCEeEEecccccccC--CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe--------
Confidence 99999888 3 343 479999999 99999999999999999999988877776653 34444444
Q ss_pred ccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEe
Q 001367 681 AGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 760 (1091)
Q Consensus 681 ~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw 760 (1091)
++++.+++++.|+.+++|++...... ..+ .+|...|.+++| |+ +++++.||.+++|
T Consensus 307 --------------~~~~~l~~~~~~g~i~~~d~~~~~~~----~~~--~~~~~~v~~~~~-~~---l~~~~~dg~i~~w 362 (615)
T 1pgu_A 307 --------------TGNGRIISLSLDGTLNFYELGHDEVL----KTI--SGHNKGITALTV-NP---LISGSYDGRIMEW 362 (615)
T ss_dssp --------------EETTEEEEEETTSCEEEEETTEEEEE----EEE--CCCSSCEEEEET-TT---TEEEETTSCEEET
T ss_pred --------------CCCCeEEEEECCCCEEEEECCCCcEE----EEE--eCCCCCEEEEEe-cC---cEEECCCCeEEEE
Confidence 26788999999999999998742211 111 348899999999 88 8999999999999
Q ss_pred ecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEec
Q 001367 761 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM 839 (1091)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~ 839 (1091)
++. ++. .+|...|.++++ +++..+++++ |+.+++||+.+++...
T Consensus 363 ~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~--- 407 (615)
T 1pgu_A 363 SSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS--- 407 (615)
T ss_dssp TTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS---
T ss_pred Ech-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC---
Confidence 853 011 248899999999 5566677666 8999999988766433
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCc
Q 001367 840 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWG 918 (1091)
Q Consensus 840 ~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~-Dg~i~vwd~~~~~ 918 (1091)
.+.+++|+| ++.+++++ .++.+.+|++.+++.+..+. |...+++++|+ +++|++++. |+.|++||+.+++
T Consensus 408 ----~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~ 478 (615)
T 1pgu_A 408 ----QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE 478 (615)
T ss_dssp ----CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE
T ss_pred ----CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc
Confidence 678999999 88888877 78899999999999888887 88999999999 899999999 9999999999854
Q ss_pred eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEee----------
Q 001367 919 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC---------- 987 (1091)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~---------- 987 (1091)
... ....+|.. .|.+++|+|+|++|++ +.|+.|++||+.+++.+..+...|...|++++|+|
T Consensus 479 ~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~ 551 (615)
T 1pgu_A 479 VSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI 551 (615)
T ss_dssp EEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred ccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccccc
Confidence 221 44455554 7999999999999999 57899999999999998875544999999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCC-ceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 988 DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 988 dg~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
|+++|++++.||.|++||+.++ ..+..+. .|...|. +++|+|+ +. |++++.||.|++|++..
T Consensus 552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~~~v~--~l~~s~~-~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHKDGVN--NLLWETP-ST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SCCEEEEEETTSCEEEEESSCTTCCEEETT--------SSTTCEE--EEEEEET-TE-EEEEETTSCEEEEEEC-
T ss_pred CCCEEEEEcCCCcEEEEECCCCceechhhh--------cCccceE--EEEEcCC-CC-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 5554432 2345565 5688884 67 99999999999999853
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-56 Score=550.92 Aligned_cols=595 Identities=9% Similarity=0.044 Sum_probs=436.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
..+|...|++++|+|++++||+|+.||+|+||+..+++... ...|..+|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45799999999999999999999999999999987764322 235788999999999 77 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce-----------eeecCCCCcEEEEEEcCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 540 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d 540 (1091)
+.+++++..+. |...|++++|+ +++.++++|+.||.|++||+++.... .....|..+|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~s--p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTD--ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECC--TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEEC--CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 77899999995 46789999999999999999876643 223567789999999996
Q ss_pred C-CEEEEEecCCCCceEEEEEecCCceeeEEEecc---------------cccccceEEEEEcCCCCEEEEEeCCCeEEE
Q 001367 541 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1091)
Q Consensus 541 ~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~v~~~~~~~~l~~~s~dg~i~i 604 (1091)
+ ..+++++. ++.| +||+.+++.++.+..+ ..|...|.+++|+|++++|++++.||+|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 66777654 6779 9999999999888766 112367999999999999999999999999
Q ss_pred EECCCCeeEEEEeC-----CC-----------CCCCCceEEEc----cCC-CEEEEEECC-----CeEEEEECCC-----
Q 001367 605 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFN----KNG-TLLAVIANE-----NRIKILETPE----- 653 (1091)
Q Consensus 605 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s----~~~-~~l~~~~~d-----g~i~iwd~~~----- 653 (1091)
||+.+++.+..... +. +...|.+++|+ |++ .++++|+.+ +.+.+|++..
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988764221 21 12358899995 443 567777665 3788888531
Q ss_pred -------------CCeecccc-cccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCC
Q 001367 654 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARP 719 (1091)
Q Consensus 654 -------------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~ 719 (1091)
.+....+. .+...+..+.+.+.......+ ..+...+++++.|+++++|++..+..
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g-----------~~d~~~l~~~s~dg~l~~~~~~~g~~ 386 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG-----------CHNPGLILLILGNGEIETMLYPSGIF 386 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH-----------TBSCSEEEEEETTSCEEEEETTTCCE
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC-----------CCCceeEEEEcCCCcEEEEECCCCCc
Confidence 11111121 234455555553311000000 23445678888899999999853311
Q ss_pred ccc-ceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCC
Q 001367 720 SEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 798 (1091)
Q Consensus 720 ~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1091)
... .........|...|.++++++... .+|+..... . +... ....
T Consensus 387 ~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~----~~l~ 432 (902)
T 2oaj_A 387 TDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD----YLLK 432 (902)
T ss_dssp ECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC----CSCC
T ss_pred ccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC----Cccc
Confidence 110 000111123557888888865321 234421100 0 0000 1122
Q ss_pred CCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeE--EE----ec-----CCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001367 799 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LT----IM-----PPSPTATSLAFNPHDNNVIAIGMDDST 866 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~--~~----~~-----~~~~~i~~l~~s~~~~~~la~g~~dg~ 866 (1091)
+|...+..++|+||+++|++++ |++|++||+.++... .. +. +|...|.+++|+| ++++||+|+.||+
T Consensus 433 G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dgt 511 (902)
T 2oaj_A 433 GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGD 511 (902)
T ss_dssp CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSC
T ss_pred CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcE
Confidence 5777888899999999999998 899999999887421 11 11 6888999999999 8999999999999
Q ss_pred EEEEeccCcc---------------------------------------------eeeeeccccCCeEEEEECCCCCEEE
Q 001367 867 ILIYNARSSE---------------------------------------------VISKLEGHSKRVTGLVFSDALNILV 901 (1091)
Q Consensus 867 i~iwd~~~~~---------------------------------------------~~~~l~~h~~~V~~l~~spdg~~la 901 (1091)
|+||++.+++ ++..+.+|.+.|++|+||||| +||
T Consensus 512 V~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lA 590 (902)
T 2oaj_A 512 VVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVG 590 (902)
T ss_dssp EEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEE
T ss_pred EEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEE
Confidence 9999998762 367788999999999999999 999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeeeccC-CCcCCCCCceEEEEc-----CCC---CEEEE-EecCeEEEEEc---CCcce
Q 001367 902 SSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELTC 968 (1091)
Q Consensus 902 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~fs-----~dg---~~la~-~~d~~i~vwd~---~~~~~ 968 (1091)
+|+.|++|+|||+++........+..+. +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|++
T Consensus 591 sgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~ 667 (902)
T 2oaj_A 591 IAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF 667 (902)
T ss_dssp EEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred EEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence 9999999999999886543221223443 6665 89999999 886 78888 58899999999 78887
Q ss_pred eeeeecCC-----ccCEEEEE-Ee----------------------eCCCEEEEEEcCCcEEEEeCCCCceEEEeecccc
Q 001367 969 LKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1020 (1091)
Q Consensus 969 ~~~~~~~h-----~~~v~~v~-fs----------------------~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~ 1020 (1091)
...+. +| ..+|.+++ |+ ++|..|+++ +..|+||++.+++.......
T Consensus 668 ~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~--- 741 (902)
T 2oaj_A 668 DVQLM-DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK--- 741 (902)
T ss_dssp EEEEE-EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS---
T ss_pred EEEec-CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc---
Confidence 76643 44 46777777 76 455555543 77899999999988765531
Q ss_pred cCCCCcccccceeE-EE------eCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1021 LRPTTSCLHVYPHA-IA------AHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1021 ~~~~~~~~~v~~~~-~~------~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
|...+..++ +. |++ ++..|++++.||.|++|++++.+
T Consensus 742 -----~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~ 785 (902)
T 2oaj_A 742 -----YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFK 785 (902)
T ss_dssp -----SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCC
T ss_pred -----cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchH
Confidence 112233221 24 566 47899999999999999998866
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-48 Score=484.33 Aligned_cols=558 Identities=14% Similarity=0.176 Sum_probs=426.8
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
...+++.+|++.|++++|||||+ ++|+|+.||.|+|||+.+++.+.. +.+|...|.+++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEE
Confidence 34578899999999999999998 679999999999999999987765 6689999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 483 (1091)
+|++++||+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.||.|++||+.++ .....+.+
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 9999999999999999999999987554 6789999999999999999 8999999999999999987 67788899
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC-CcEEEEEEcC--CCCEEEEEecCCCCceEEEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~iw 560 (1091)
|...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++|
T Consensus 139 ~~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~ 213 (814)
T 3mkq_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (814)
T ss_dssp CSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEE
T ss_pred CCCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEE
Confidence 9999999999652 56799999999999999998887777666554 7899999999 9999999875 6679999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC--EEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 638 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 638 (1091)
|+.+++.+..+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIA 288 (814)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEE
T ss_pred ECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEE
Confidence 999999999998877 8999999999999999999999999999999999998877654 689999999987 455
Q ss_pred EEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccc---------
Q 001367 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKS--------- 709 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i--------- 709 (1091)
++ .++.+.+|++..... .+.+ +|+++.+++++.+...
T Consensus 289 ~~-~~~~~~~~~~~~~~~------------~~~~---------------------~~~g~~~~~~~~~~~~~~~~~~~~~ 334 (814)
T 3mkq_A 289 SG-FDNGFTVLSLGNDEP------------TLSL---------------------DPVGKLVWSGGKNAAASDIFTAVIR 334 (814)
T ss_dssp EE-ETTEEEEEECSCCSC------------CEEE---------------------CSSSEEEEECCTTSCTTCEEEEECC
T ss_pred EE-eCCCEEEEEcCCCCc------------eeEE---------------------CCCCCEEEECcccccceeeeeeecc
Confidence 55 467788998765432 2333 3444444443332211
Q ss_pred ccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCc
Q 001367 710 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 789 (1091)
Q Consensus 710 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1091)
..|++............. ..+...+.+++|+|+|+.+++++ +|.+.+|++.....
T Consensus 335 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~---------------------- 389 (814)
T 3mkq_A 335 GNEEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN---------------------- 389 (814)
T ss_dssp SCCCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE----------------------
T ss_pred cccccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc----------------------
Confidence 123322222211111111 22556788999999999888877 89999998542110
Q ss_pred eeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCC---cEEEEEeCCC
Q 001367 790 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDDS 865 (1091)
Q Consensus 790 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~---~~la~g~~dg 865 (1091)
.+...+.+++|+|||+++++++ ++.|++|+. +.+|...+.+++|+| ++ .+|++++.|+
T Consensus 390 ---------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~ 451 (814)
T 3mkq_A 390 ---------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSDG 451 (814)
T ss_dssp ---------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEETT
T ss_pred ---------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecCC
Confidence 1345678999999999999997 699999963 344677888999999 77 5788899999
Q ss_pred eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEE------eCCCcEEEEEcCC---------------Cceeeeee
Q 001367 866 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCRS 924 (1091)
Q Consensus 866 ~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~------s~Dg~i~vwd~~~---------------~~~~~~~~ 924 (1091)
.|++||+.+++.+..+..|.. .++|+|||++|+++ +.++.+.+|.-.. +.......
T Consensus 452 ~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (814)
T 3mkq_A 452 FVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDV 528 (814)
T ss_dssp EEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEE
T ss_pred EEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheee
Confidence 999999999999999988765 89999999999999 6666555554210 00000011
Q ss_pred eeccCCCcCCCCCceEEEEcCCCCEEEEEe-cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEE
Q 001367 925 LQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1003 (1091)
Q Consensus 925 ~~~~~~~~~~~~~i~~l~fs~dg~~la~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~i 1003 (1091)
+.... ..+.+..|. +..++... .+.+..+- .++... .......+..+.|.+++..++....++.+..
T Consensus 529 ~~~~~------~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 596 (814)
T 3mkq_A 529 LYELS------ESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVYG 596 (814)
T ss_dssp EEEEC------SCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEEE
T ss_pred eeEec------cEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEEE
Confidence 11100 135555554 34444333 34444432 222111 1122456667778899999999999999999
Q ss_pred EeCCCC
Q 001367 1004 HEASNL 1009 (1091)
Q Consensus 1004 wd~~~~ 1009 (1091)
|++...
T Consensus 597 ~~l~~~ 602 (814)
T 3mkq_A 597 YEISLE 602 (814)
T ss_dssp EECCHH
T ss_pred EEECcH
Confidence 998643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=471.05 Aligned_cols=477 Identities=15% Similarity=0.183 Sum_probs=391.5
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|...|++++|+|+|++||+++.||.|+|||+.+++.+. .+.+|..+|.+++|+|+++ +|++++.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999986554 6779999999999999999 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC-CceeeecCCCCcEEEEEEcC-CCCEEEEEec
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 549 (1091)
+.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999954 6679999999999999999887 45567788899999999999 8889999876
Q ss_pred CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
++.|++||+.++.....+..+. ...+.+++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.+
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~ 233 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEE
Confidence 6679999999888877776654 47899999999 999999999999999999999999998887654 6899
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcc-cccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPE-ISVEAE 706 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l-~s~~~d 706 (1091)
++|+|+++++++++.||.|++||..++.....+..+...+.++++ +|++..+ ++.+.+
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~---------------------~~~~~~~~~~~~~~ 292 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT---------------------HPTGRKNYIASGFD 292 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEE---------------------CTTCGGGEEEEEET
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEE---------------------ccCCCceEEEEEeC
Confidence 999999999999999999999999999999999999999999999 5565543 555666
Q ss_pred cccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCce---EEEeecCCcccccccceeeccCCcccc
Q 001367 707 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV---HLMWRWPRNDLTLSTEATTKVPPRLYQ 783 (1091)
Q Consensus 707 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~---i~vw~~~~~~~~~~~~~~~~~~~~~~~ 783 (1091)
+.+.+|++.. ....+.++|+|+.+++++.+.. +..-.+ ...|+
T Consensus 293 ~~~~~~~~~~------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 338 (814)
T 3mkq_A 293 NGFTVLSLGN------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVI----------------RGNEE 338 (814)
T ss_dssp TEEEEEECSC------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEEC----------------CSCCC
T ss_pred CCEEEEEcCC------------------CCceeEECCCCCEEEECcccccceeeeeeec----------------ccccc
Confidence 7788887642 1234678899988877765532 111000 01122
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 001367 784 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 863 (1091)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~ 863 (1091)
+..+............+...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +++++|+++.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~ 412 (814)
T 3mkq_A 339 VEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDE 412 (814)
T ss_dssp CCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECT
T ss_pred cccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeC
Confidence 33332221111111236677899999999999999999999999987654432 35678999999 8999999999
Q ss_pred CCeEEEEeccCcceeeeeccccCCeEEEEECCCC---CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceE
Q 001367 864 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 940 (1091)
Q Consensus 864 dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 940 (1091)
+|.|++|+ .+.+|...+.+++|+||| ++|++++.|+.|++||+.+++ .+.....+. ..
T Consensus 413 ~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~ 473 (814)
T 3mkq_A 413 TGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KD 473 (814)
T ss_dssp TCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EE
T ss_pred CCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CE
Confidence 99999995 346688889999999998 689999999999999999865 334444432 28
Q ss_pred EEEcCCCCEEEEE------ecCeEEEEEc
Q 001367 941 IQFHKDQTRFLLV------HETHLAIYEA 963 (1091)
Q Consensus 941 l~fs~dg~~la~~------~d~~i~vwd~ 963 (1091)
++|||||++|+++ .++.+.+|..
T Consensus 474 v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 474 VIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 9999999999997 6666666644
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=418.41 Aligned_cols=288 Identities=22% Similarity=0.368 Sum_probs=266.9
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
.++.+|.++|++++|+|+++ ++++|+.||+|+|||+.+++.+.. +.+|...|.+++|+|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~ 161 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS 161 (410)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence 45789999999999999998 779999999999999999987765 7789999999999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
+++||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++.++.++.+|...
T Consensus 162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 9999999999999999999876554 5779999999999999999 8999999999999999999999999999999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCC--------------------CCEEEEE
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC 547 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------~~~l~~~ 547 (1091)
|.++.++ +++.++++++.|+.|++||+.+......+..|...|.+++|+|+ +.+++++
T Consensus 237 v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 237 VRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 9999984 57789999999999999999999988899999999999999996 6789998
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|++++|++++.||+|++||+.+++.+..+..|.. .|.+
T Consensus 315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~ 385 (410)
T 1vyh_C 315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTS 385 (410)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEE
T ss_pred eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEE
Confidence 76 6779999999999999999887 8999999999999999999999999999999999999987755 6999
Q ss_pred EEEccCCCEEEEEECCCeEEEEEC
Q 001367 628 ICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
++|+|++.+|++|+.||+|++|+.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=362.03 Aligned_cols=296 Identities=19% Similarity=0.271 Sum_probs=266.3
Q ss_pred chheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEE
Q 001367 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 402 (1091)
+....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~ 103 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC 103 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence 3456788999999999999999998 679999999999999999987754 66799999999
Q ss_pred EECCCCCEEEEEECCCEEEEEEeeCCcc-cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe
Q 001367 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1091)
+|+|++++||+|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+
T Consensus 104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999999987642 233446789999999999999875 889999999999999999999999
Q ss_pred cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
.+|...|.+++|++ ++.++++++.||.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||
T Consensus 181 ~~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd 254 (340)
T 1got_B 181 TGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD 254 (340)
T ss_dssp CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence 99999999999965 6689999999999999999999999999999999999999999999999986 66799999
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
+.+++.+..+.... ....|.+++|+|+++++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|++.+|++++
T Consensus 255 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 255 LRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp TTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEE
T ss_pred CCCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEc
Confidence 99988877765322 235799999999999999999999999999999999999887755 799999999999999999
Q ss_pred CCCeEEEEE
Q 001367 642 NENRIKILE 650 (1091)
Q Consensus 642 ~dg~i~iwd 650 (1091)
.|+.|++||
T Consensus 332 ~D~~i~iWd 340 (340)
T 1got_B 332 WDSFLKIWN 340 (340)
T ss_dssp TTSCEEEEC
T ss_pred CCccEEecC
Confidence 999999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-40 Score=359.13 Aligned_cols=294 Identities=15% Similarity=0.235 Sum_probs=265.1
Q ss_pred heeeecccCCCCcEEEEEcCC----CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspd----g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1091)
.+.+.+.+|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++.... ..+.+|...|.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~ 84 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVV 84 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEE
Confidence 445677899999999999985 44 789999999999999987654321 12779999999
Q ss_pred EEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++||+.+++....
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEE
Confidence 99999999999999999999999999986554 6778889999999999999 899999999999999999999999
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
+..|...|.+++|+ +++.+|++++.||.|++||+.+++....+..+..+|.+++|+|++++|++++. ++.|++|
T Consensus 160 ~~~~~~~v~~~~~s--pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iw 233 (321)
T 3ow8_A 160 LDTRGKFILSIAYS--PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIY 233 (321)
T ss_dssp EECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEE
T ss_pred ecCCCceEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 99999999999995 47789999999999999999999888899999999999999999999999976 6679999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1091)
|+.+++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++++..+..+.. .|.+++|+|++++|+++
T Consensus 234 d~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 234 DVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp ETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred ECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEE
Confidence 999999999998887 8999999999999999999999999999999999999877654 79999999999999999
Q ss_pred ECCCeEEEEECC
Q 001367 641 ANENRIKILETP 652 (1091)
Q Consensus 641 ~~dg~i~iwd~~ 652 (1091)
+.||.|++||..
T Consensus 309 ~~d~~i~vwd~p 320 (321)
T 3ow8_A 309 GDDQEIHIYDCP 320 (321)
T ss_dssp ETTCCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 999999999964
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=362.44 Aligned_cols=298 Identities=17% Similarity=0.244 Sum_probs=267.9
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
....++|.+|.+.|++++|+||++ +||+|+.||+|+|||..+++.... +..|...|.+++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~ 113 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACA 113 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEE
Confidence 456788999999999999999998 679999999999999999887654 556889999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcc---cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
|+|+|.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+.+++++..
T Consensus 114 ~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~ 191 (354)
T 2pbi_B 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQS 191 (354)
T ss_dssp ECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEE
Confidence 999999999999999999999875421 223346778999999999999999 799999999999999999999999
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
+.+|...|.++++++.+++.+|++++.||.|++||+++++....+..|...|.+++|+|++.++++++. ++.|++|
T Consensus 192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lw 267 (354)
T 2pbi_B 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLY 267 (354)
T ss_dssp EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEE
T ss_pred EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEE
Confidence 999999999999988878889999999999999999999998899999999999999999999999986 6679999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1091)
|+.+++.+..+..+. ....+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|+++
T Consensus 268 d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 268 DLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp ETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEE
T ss_pred ECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEE
Confidence 999988777665433 234789999999999999999999999999999999888876654 79999999999999999
Q ss_pred ECCCeEEEEE
Q 001367 641 ANENRIKILE 650 (1091)
Q Consensus 641 ~~dg~i~iwd 650 (1091)
+.|++|++|+
T Consensus 345 s~D~~v~vW~ 354 (354)
T 2pbi_B 345 SWDHTLRVWA 354 (354)
T ss_dssp ETTSEEEEEC
T ss_pred cCCCCEEecC
Confidence 9999999995
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=350.81 Aligned_cols=293 Identities=18% Similarity=0.310 Sum_probs=257.0
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
...+++.+|.+.|++++|||||+ +|++|+.||+|+|||+.++..+.. +.+|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 45678999999999999999998 679999999999999999987754 6679999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 483 (1091)
+|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987554 6889999999999999999 8999999999999999987 45577899
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-CCCCcEEEEEEcC--CCCEEEEEecCCCCceEEEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~iw 560 (1091)
|...|.+++|+|. ++.+|++++.|+.|++||+........+. .+...+..+.|+| ++.+|++++. ++.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999763 45799999999999999998877666554 4556788889886 7789999986 6789999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC--EEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 638 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 638 (1091)
|+.+++++..+.+|. ..|.+++|+|++++|++|+.||+|++||..+++.+..+..+.. .+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIA 288 (304)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEE
T ss_pred eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEE
Confidence 999999999999988 8999999999999999999999999999999999999876544 688999999875 577
Q ss_pred EEECCCeEEEEECCC
Q 001367 639 VIANENRIKILETPE 653 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~ 653 (1091)
+|+.+| +.+|++..
T Consensus 289 sg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEETTE-EEEEECC-
T ss_pred EecCCc-eEEEEecc
Confidence 777654 66777653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=348.93 Aligned_cols=301 Identities=19% Similarity=0.241 Sum_probs=259.4
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+..+|.+|.+.|++++|+|++..+|++|+.|++|++|++.+...... .....+.+|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEEE
Confidence 355789999999999999998744889999999999999875443221 111237799999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
+|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|++|++||+. ++++..+.+|
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h 147 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH 147 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence 9999999999999999999999987554 6789999999999999999 89999999999999975 6678889999
Q ss_pred CcceEEEeecccC----CceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 485 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 485 ~~~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
...|.++.+.+.. ++..+++++.|+.|++||++.......+..|...|.+++|+|++++|++++. ++.|++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw 223 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW 223 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence 9999999997643 4568999999999999999998888889999999999999999999999986 6789999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC------CCCCCceEEEccCC
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG 634 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~ 634 (1091)
|+.+++.+..+..+ ..|.+++|+|++.++++++.+ .+++|+++.+..+..+..+. ....+.+++|+|||
T Consensus 224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 298 (319)
T 3frx_A 224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298 (319)
T ss_dssp ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence 99999998888764 479999999999998888755 59999999988877765331 12357799999999
Q ss_pred CEEEEEECCCeEEEEECCCC
Q 001367 635 TLLAVIANENRIKILETPES 654 (1091)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~~~ 654 (1091)
++|++|+.||.|++|++.++
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEeecCceEEEEEEeec
Confidence 99999999999999998653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=363.95 Aligned_cols=306 Identities=17% Similarity=0.257 Sum_probs=264.5
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
..+.++|.+|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+.. +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 456788999999999999999998 679999999999999999987754 678999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcc----cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
|+|+|++||+|+.|+.|++|++.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999976421 1122357799999999999998654 69999999999999999999988
Q ss_pred Ee-----cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC-CCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 480 SF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 480 ~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.+ .+|...|.++++.+. ++.++++|+.||.|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 77 679999999998643 567999999999999999984 4667788899999999999999999999986
Q ss_pred ceEEEEEecCCceeeEEEecccc----cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC--CCCCCCCce
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPR 627 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 627 (1091)
++.|++||+.+++.+..+..+.. +...|.+++|+|+++++++|+.||.|++||..+++.+..+.. ..+...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 66799999999999888766431 123488999999999999999999999999999988877732 233457999
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
++|+|++++|++|+.|++|++|++...+
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999999987653
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=361.94 Aligned_cols=286 Identities=18% Similarity=0.288 Sum_probs=267.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|..+|++++|+|++.+|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 66899999999999999999999999999999999987655 6889999999999999999 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+.+++++..+.+|...|.+++|++ ++.+|++++.|+.|++||+.++.....+..|...+.++.++|++.++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999965 5679999999999999999999998899999999999999999999999986
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCC--------------------CCEEEEEeCCCeEEEEECCCCe
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~--------------------~~~l~~~s~dg~i~iwd~~~~~ 611 (1091)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|+.|++||+.+++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6679999999999999998887 89999999996 6789999999999999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCC
Q 001367 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNE 691 (1091)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~ 691 (1091)
.+..+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|++++|
T Consensus 330 ~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~------------------- 388 (410)
T 1vyh_C 330 CLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF------------------- 388 (410)
T ss_dssp EEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE-------------------
T ss_pred eEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE-------------------
Confidence 9999887654 6899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccccccccccc
Q 001367 692 DPKEDVKPEISVEAENKSEVEKP 714 (1091)
Q Consensus 692 ~~s~~~~~l~s~~~d~~i~~w~~ 714 (1091)
+|++..+++++.|++|++|+.
T Consensus 389 --~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 389 --HKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp --CSSSSCEEEEETTSEEEEEC-
T ss_pred --cCCCCEEEEEeCCCcEEEEeC
Confidence 788899999999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=346.79 Aligned_cols=286 Identities=14% Similarity=0.181 Sum_probs=262.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|...|.+++|+||+++|++|+.|++|++||+.+++.+. .+..|...|.+++|+|+++ ++++++.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 78999999999999999999999999999999999886544 6778999999999999999 899999999999999
Q ss_pred CCCC----ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 472 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
+.++ .....+.+|...|.++.|.+. + .+++++.|+.|++||++++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9876 345678899999999999653 3 58999999999999999999888999999999999999999999999
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
+. ++.|++||+.++.....+.+|. ..|.+++|+|+++++++++.||+|++||+.+++.+..+..+.....|.+
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 86 6679999999999999998887 8999999999999999999999999999999998888765554456899
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
++|+|++++|++|+.|+.|++||+.++..+..+.+|...|.+++| +|++..+++++.|+
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~---------------------s~dg~~l~s~s~D~ 334 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV---------------------TDDGMAVATGSWDS 334 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE---------------------CTTSSCEEEEETTS
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEE---------------------cCCCCEEEEEcCCc
Confidence 999999999999999999999999999999999999999999999 78899999999999
Q ss_pred cccccc
Q 001367 708 KSEVEK 713 (1091)
Q Consensus 708 ~i~~w~ 713 (1091)
+|++|+
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-38 Score=344.54 Aligned_cols=288 Identities=16% Similarity=0.242 Sum_probs=263.9
Q ss_pred ecCCCccEEEEEECCC----CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcE
Q 001367 392 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1091)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+||++.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5689999999999985 67999999999999999987653 23346789999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
++||+.+++.+..+..|...+.+++|+ +++.+|++++.||.|++|++++......+..+...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEEC--TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEEC--CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999995 477899999999999999999999988888888999999999999999999
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.+++....+..+.. .|.+
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~ 253 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLN 253 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS--CEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEE
Confidence 86 5669999999999999998887 8999999999999999999999999999999999988877654 6899
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++| +|+++.+++++.|+
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~---------------------s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY---------------------NGNGSKIVSVGDDQ 312 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---------------------CTTSSEEEEEETTC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEE---------------------CCCCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999 78899999999999
Q ss_pred ccccccc
Q 001367 708 KSEVEKP 714 (1091)
Q Consensus 708 ~i~~w~~ 714 (1091)
+|++||.
T Consensus 313 ~i~vwd~ 319 (321)
T 3ow8_A 313 EIHIYDC 319 (321)
T ss_dssp CEEEEEC
T ss_pred eEEEEeC
Confidence 9999995
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=346.78 Aligned_cols=306 Identities=15% Similarity=0.236 Sum_probs=249.6
Q ss_pred heeeecccCCC-CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 325 TVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 325 ~~~~~l~~h~~-~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.++++|.+|.+ .|++++|||||+ +||+|+.|++|+|||+.++..... .....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence 56788999998 999999999998 679999999999999988764321 112468999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc---eeEE
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYS 480 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~ 480 (1091)
|+|+|++||+|+.|++|++|++.++.. .....+.+|...|.+++|+|+++ +|++++.|++|++||+.++. ++..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987642 23346889999999999999999 89999999999999998763 4667
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
+.+|...|.+++|+| ++.+|++++.|+.|++||.+.... ...+..|...|.+++|+|++++|++++. ++.|+
T Consensus 146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVR 219 (345)
T ss_dssp ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEE
T ss_pred ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEE
Confidence 889999999999965 567999999999999999987653 3577889999999999999999999986 66799
Q ss_pred EEecCCc---------------eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----eE---EEE
Q 001367 559 EWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----LL---TTI 616 (1091)
Q Consensus 559 iwd~~~~---------------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~----~~---~~~ 616 (1091)
+|+.... .++..+.+. |...|.+++|+|++..+++++.|+.|++|+...+. .. ...
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 9996321 233344442 24789999999999999999999999999987542 11 111
Q ss_pred eCCCCCCCCceEEEccCC-CEEEEEECCCeEEEEECCCCCeec
Q 001367 617 DAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1091)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1091)
....+...|.+++|+|++ .+|++++.||+|++|++.+.+...
T Consensus 298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 122334579999999987 599999999999999998876543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=355.05 Aligned_cols=313 Identities=16% Similarity=0.200 Sum_probs=228.9
Q ss_pred ccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC------ceEEEeecCCcccccccce
Q 001367 700 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN------GVHLMWRWPRNDLTLSTEA 773 (1091)
Q Consensus 700 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d------g~i~vw~~~~~~~~~~~~~ 773 (1091)
++.++.+.....|++....+ ..|...|.+++|+|||++|++++.+ +.+++|+.
T Consensus 19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~----------- 77 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD----------- 77 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS-----------
T ss_pred EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC-----------
Confidence 34445567778888653221 2488999999999999999999874 45555553
Q ss_pred eeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEE----EecCCCCCeEEEE
Q 001367 774 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLA 849 (1091)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~ 849 (1091)
.++...........+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++
T Consensus 78 -----------~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 78 -----------PEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp -----------CC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred -----------CCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 3332222211112247888999999999988887779999999999887553 3447889999999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecc
Q 001367 850 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTP 928 (1091)
Q Consensus 850 ~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~las~s~Dg~i~vwd~~~~~~~~~~~~~~~ 928 (1091)
|+| ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++. ++++++.|++|++||+.+++.... ...
T Consensus 147 ~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~---~~~ 222 (357)
T 4g56_B 147 VFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR---IDF 222 (357)
T ss_dssp ECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB---CCC
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee---eee
Confidence 999 899999999999999999999999999999999999999999875 789999999999999988653221 111
Q ss_pred CCCcCCCCCceEEEEcCCC-CEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCC-CEEEEEEcCCcEEEEe
Q 001367 929 DGVMTLAPSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 929 ~~~~~~~~~i~~l~fs~dg-~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg-~~l~t~~~dg~v~iwd 1005 (1091)
..+. ..+.+++|+|++ .+|++ +.|+.|++||+.+++.+.. +.+|...|++++|+|++ ++|++++.||+|+|||
T Consensus 223 ~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 223 CASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp TTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred cccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 2222 268999999985 56777 5789999999999998877 56789999999999998 5799999999999999
Q ss_pred CCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1006 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
+.+++.+..+. |...|+ +++|+|.|+.+|++|+.||+|++|+++..+
T Consensus 299 ~~~~~~~~~~~---------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 299 ADFSEVFRDLS---------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TTSCEEEEECC---------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCcEeEECC---------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 99998774432 455565 678999778999999999999999997654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=336.84 Aligned_cols=295 Identities=18% Similarity=0.311 Sum_probs=261.0
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
....++.+|.+.|++++|+|+|+ ++|+|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 45678899999999999999998 679999999999999999887654 6789999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987554 6789999999999999999 8999999999999999999999999999
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
..+|.+++|++ ++.++++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 99999999954 67899999999999999999887766554 45567999999999999999886 6679999999
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE--
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-- 641 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-- 641 (1091)
+++.+..+.++......+......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEcc
Confidence 9999999988773333344444457788999999999999999999999999887654 689999999999999997
Q ss_pred CCCeEEEEECC
Q 001367 642 NENRIKILETP 652 (1091)
Q Consensus 642 ~dg~i~iwd~~ 652 (1091)
.|+.|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-38 Score=348.82 Aligned_cols=294 Identities=13% Similarity=0.149 Sum_probs=238.6
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcC------CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~------dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..|...|++++|||||+ +||+|+. |++|++|+..++........ ...+|...|.+++|
T Consensus 39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVAW 102 (357)
T ss_dssp -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEEE
T ss_pred ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEEE
Confidence 57999999999999998 6788887 67899999888765432111 14468899999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccce-eEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1091)
+|++++| +++.||+|+|||+.+++.... .....+|...|.+++|+|+++ +|++++.|+.|++||+.+++++..+.+
T Consensus 103 s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 103 VSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp ETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9998655 577899999999998865432 224558999999999999999 899999999999999999999999999
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee--cCCCCcEEEEEEcCCC-CEEEEEecCCCCceEEEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iw 560 (1091)
|...|++++|++..+ .++++++.||.|++||+++.+....+ ..+...+.+++|+|++ .++++++. ++.|++|
T Consensus 180 h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~w 254 (357)
T 4g56_B 180 HSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLV 254 (357)
T ss_dssp CSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEE
T ss_pred CCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEE
Confidence 999999999976533 47899999999999999988766544 3456679999999985 56777765 5669999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc-CCCEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLA 638 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 638 (1091)
|+.+++.+..+.++. ..|.+++|+|++ ++|++++.|++|+|||+++++.+..+ .| ...|.+++|+| ++++|+
T Consensus 255 d~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H--~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 255 NIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH--RDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp ESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC--SSCEEEEEECSSSTTEEE
T ss_pred ECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC--CCCEEEEEEeCCCCCEEE
Confidence 999999999999887 899999999987 57889999999999999999888765 33 34799999998 899999
Q ss_pred EEECCCeEEEEECCCC
Q 001367 639 VIANENRIKILETPES 654 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~ 654 (1091)
+++.||+|++|++.+.
T Consensus 329 s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEETTSCEEEEECC--
T ss_pred EEcCCCeEEEEECCCC
Confidence 9999999999999754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=340.79 Aligned_cols=299 Identities=14% Similarity=0.123 Sum_probs=238.5
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEecccccc-ceeeeeecCCCccEEEEEECCCCC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM-LFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
..|...|.+++|||||+ +|++++ |+++++||... .+|+...... .-.......|...|.+++|+||+
T Consensus 27 ~~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~- 94 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER- 94 (344)
T ss_dssp SSCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred ccccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence 35666899999999998 667776 67888887321 1111100000 00001123366789999999985
Q ss_pred EEEEEECCCEEEEEEeeCCccccee-EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
+|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 7889999999999999998765432 24568999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec--CCCCcEEEEEEcCCC-CEEEEEecCCCCceEEEEEecCCc
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
.+++|++... .++++++.|++|++||+++.+....+. .+...+.+++|+|++ +++++++. ++.|++||++++
T Consensus 173 ~~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~ 247 (344)
T 4gqb_B 173 TCVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKST 247 (344)
T ss_dssp EEEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC-
T ss_pred EEEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCC
Confidence 9999976432 478999999999999999988877654 345578999999954 56777765 678999999999
Q ss_pred eeeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC-EEEEEECC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANE 643 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~d 643 (1091)
+.+..+.+|. ..|.+++|+|++ ++|++|+.|++|++||+.+++++. +..| ...|.+++|+|+++ +|++++.|
T Consensus 248 ~~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 248 SCVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp -CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETT
T ss_pred cEEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCC
Confidence 9999999988 899999999998 578899999999999999988654 4444 34799999999886 67799999
Q ss_pred CeEEEEECCCC
Q 001367 644 NRIKILETPES 654 (1091)
Q Consensus 644 g~i~iwd~~~~ 654 (1091)
++|++|++.+.
T Consensus 322 ~~v~~w~v~~~ 332 (344)
T 4gqb_B 322 HQVVHHVVPTE 332 (344)
T ss_dssp SCEEEEECCC-
T ss_pred CeEEEEECCCC
Confidence 99999999865
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=344.07 Aligned_cols=296 Identities=13% Similarity=0.157 Sum_probs=226.6
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
+...|.+++|+|||+.|++++ ++++++|+... .+|+................+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 567799999999999776655 77888887321 11111000000000000012567899999999
Q ss_pred CCCEEEEEeCCeEEEEEccCceeEEE----ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCC
Q 001367 812 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 887 (1091)
Q Consensus 812 dg~~la~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~ 887 (1091)
++.+++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 97655444489999999998876543 347999999999999 8999999999999999999999999999999999
Q ss_pred eEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCC-CCEEEE-EecCeEEEEEcC
Q 001367 888 VTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAE 964 (1091)
Q Consensus 888 V~~l~~spdg-~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d-g~~la~-~~d~~i~vwd~~ 964 (1091)
|++++|+|++ .+|++++.|++|++||+.+++.... +. ...+. ..+.+++|+|+ +++|++ +.|+.|++||++
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~-~~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IG-CSAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee--ee-cceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 9999999998 5789999999999999998663321 11 11121 25889999995 567777 578999999999
Q ss_pred CcceeeeeecCCccCEEEEEEeeCC-CEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCC
Q 001367 965 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1043 (1091)
Q Consensus 965 ~~~~~~~~~~~h~~~v~~v~fs~dg-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1043 (1091)
+++++.. +.+|...|++++|+||| ++|++++.||+|+|||+.+++... +. .|...|+ +++|+|++..
T Consensus 246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~~V~--~v~~sp~~~~ 313 (344)
T 4gqb_B 246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRDFVR--DATWSPLNHS 313 (344)
T ss_dssp C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSSCEE--EEEECSSSTT
T ss_pred CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCCCEE--EEEEeCCCCe
Confidence 9999887 56899999999999998 579999999999999999987653 21 2456666 6789996556
Q ss_pred eEEEEecCCcEEEEecCCC
Q 001367 1044 QFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1044 ~l~~g~~dg~v~~w~~~~~ 1062 (1091)
+|++|+.||+|++|++...
T Consensus 314 llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEETTSCEEEEECCC-
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 7889999999999999653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=356.28 Aligned_cols=341 Identities=13% Similarity=0.181 Sum_probs=282.3
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEc----CCCCceeeeceeEEecccccccee-eeeecCCCccEEEEEEC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQKLFIRNFKVWDIGACSMLFK-TALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~l~~s 405 (1091)
..|.+.|++++|+|+|+.+||+|+.||.|++||+ .+++.+..... ...+ ..++. .....+|...|++++|+
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAEL---RHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEE---ECCCCCC------CBCEEEEEEC
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-cccc---cccccccccccCCCCceEEEEEc
Confidence 3455899999999999845699999999999999 88873211000 0000 00000 00122378899999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
|++++|++++.|+.|++|| .+++.+ ..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..+.
T Consensus 118 ~~~~~l~~~~~dg~i~i~~-~~~~~~---~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 191 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWN-KTGALL---NVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFELKE 191 (425)
T ss_dssp TTSSEEEEEETTSCEEEEE-TTSCEE---EEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECCC-
T ss_pred CCCCEEEEEeCCCeEEEEe-CCCCee---eeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeeccc
Confidence 9999999999999999999 444433 36789999999999999999 89999999999999999999999998887
Q ss_pred cc---------------eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 486 AP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 486 ~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
.. +.+++|++. ..+++++.+|.|++||+........+..+...+.+++|+|++++|++++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 267 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD- 267 (425)
T ss_dssp --------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-
T ss_pred cCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-
Confidence 77 888888653 36999999999999999999888888899999999999999999999986
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
++.|++||+.+++.+..+..+. ..|.+++|+|++ .+++++.|+.|++||+.+++.+..+..+.. .+.+++|
T Consensus 268 ---d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~ 338 (425)
T 1r5m_A 268 ---DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRI 338 (425)
T ss_dssp ---TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEE
T ss_pred ---CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEE
Confidence 5669999999999998888777 899999999999 999999999999999999999998887654 6899999
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCC--------------------eecccccccc--cceeeeeccccccccccccCCcc
Q 001367 631 NKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSV 688 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~g~~ 688 (1091)
+|++++|++++.||.|++|++.++. .+..+..|.. .|.+++|
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------- 402 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW---------------- 402 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE----------------
T ss_pred cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc----------------
Confidence 9999999999999999999999877 7778888866 8999988
Q ss_pred cCCCCCCCCCccccccccccccccccc
Q 001367 689 SNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 689 ~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|+++.+++++.|+.|++|++.
T Consensus 403 -----s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 403 -----NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----CTTSSEEEEEESSSCCEEEECC
T ss_pred -----cCCCceEEEEecCceEEEEeec
Confidence 7888999999999999999974
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=338.82 Aligned_cols=287 Identities=15% Similarity=0.171 Sum_probs=260.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|...|.+++|+||+++||+|+.|++|+|||..+++... .+..|...|.+++|+|+|. ++++++.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77899999999999999999999999999999998876444 5678999999999999999 899999999999999
Q ss_pred CCCC------ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC--CCCE
Q 001367 472 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 543 (1091)
Q Consensus 472 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--d~~~ 543 (1091)
+... .....+.+|...|.+++|++ ++..|++++.|++|++||+++++....+..|...+.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8643 34567788999999999954 567999999999999999999999999999999999999987 5789
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
+++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|+++.+++++.|++|++||+.+++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 6679999999999999998887 899999999999999999999999999999998887776655445
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
.+.+++|+|++++|++++.|+.|++||+.++..+..+.+|...|.+++| +|+++.++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~---------------------spdg~~l~sg 344 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRV---------------------SPDGTAFCSG 344 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEE---------------------CTTSSCEEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEE---------------------CCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999 8889999999
Q ss_pred cccccccccc
Q 001367 704 EAENKSEVEK 713 (1091)
Q Consensus 704 ~~d~~i~~w~ 713 (1091)
+.|++|++|+
T Consensus 345 s~D~~v~vW~ 354 (354)
T 2pbi_B 345 SWDHTLRVWA 354 (354)
T ss_dssp ETTSEEEEEC
T ss_pred cCCCCEEecC
Confidence 9999999996
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=333.74 Aligned_cols=297 Identities=17% Similarity=0.199 Sum_probs=233.8
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeee-cC-CCccEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RD-PGVSVNRV 402 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~l 402 (1091)
+++++|.+|.+.|++++|+|+ +||+|+.|++|+|||+.++..... ..+ .+ |...|.++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~v 64 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRSV 64 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEEE
Confidence 467889999999999999997 679999999999999987642211 013 34 99999999
Q ss_pred EECCCCCEEEEEECCCEEEEEEeeCCc----ccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC----
Q 001367 403 VWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---- 474 (1091)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---- 474 (1091)
+|+|++++||+|+.|++|+|||+..+. .......+.+|...|.+++|+|+++ +|++++.|++|++||+..
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence 999999999999999999999996432 1233446789999999999999999 899999999999999943
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC--CceeeecCCCCcEEEEEEcCC--CCEEEEEecC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTS 550 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~ 550 (1091)
.+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +..|++++.
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred eEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 256778899999999999965 5679999999999999998765 456678889999999999998 678888886
Q ss_pred CCCceEEEEEecCCc--------eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--EEEEeCCC
Q 001367 551 KEGESFLVEWNESEG--------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGG 620 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~ 620 (1091)
++.|++||+.++ .....+.+. |...|.+++|++++ .+++++.||.|++|+..+++. .... ...
T Consensus 220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~ 292 (330)
T 2hes_X 220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDV--HKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALC 292 (330)
T ss_dssp ---TSCEEEEEEEEECTTSCEEEEEEEECCSC--CSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCT
T ss_pred ---CCeEEEEEecCCCccccceeEEeeecccc--cccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccc
Confidence 667999998765 333444431 24889999999764 899999999999999988743 3232 122
Q ss_pred CCC-CCceEEEcc--CCCEEEEEECCCeEEEEECCC
Q 001367 621 GLP-ENPRICFNK--NGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 621 ~~~-~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
+.. .|.+++|+| ++++|++++.||+|++|++..
T Consensus 293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 223 689999999 789999999999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=337.32 Aligned_cols=302 Identities=17% Similarity=0.273 Sum_probs=244.6
Q ss_pred hheeeecccCCCCcEEEEE-----cC-CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc
Q 001367 324 KTVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~f-----sp-dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1091)
..+..+|.+|++.|++++| +| |++ +||+|+.|++|+|||+.+++.... .......+.+|..
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~ 77 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCC
Confidence 3567789999999999999 77 887 789999999999999986543211 0011223789999
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
.|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.. ..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~ 151 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-EC 151 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cc
Confidence 99999999999999999999999999999986554 6789999999999999999 899999999999999874 44
Q ss_pred eEEec---CCCcceEEEeecccCC--------ceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEE
Q 001367 478 TYSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1091)
Q Consensus 478 ~~~~~---~~~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 546 (1091)
..... +|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence 43433 7889999999976532 268999999999999994 44556677889999999999999999999
Q ss_pred EecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEE--EEeCC----
Q 001367 547 CGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG---- 619 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~---- 619 (1091)
++. ++.|++||+.. ......+.. . ..|.+++|+|++.++++ +.|+.|++||+.+++... .+...
T Consensus 231 gs~----dg~v~iwd~~~~~~~~~~~~~-~---~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 231 GGK----DKKLLIWDILNLTYPQREFDA-G---STINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp EET----TCEEEEEESSCCSSCSEEEEC-S---SCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred EcC----CCeEEEEECCCCcccceeecC-C---CcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence 986 67799999944 444444432 2 57999999999887654 467889999998876544 33211
Q ss_pred -----CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 620 -----GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 620 -----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
++...+.+++|+|++++|++|+.||.|++|++.++
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 23446889999999999999999999999997643
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=348.38 Aligned_cols=328 Identities=16% Similarity=0.226 Sum_probs=263.4
Q ss_pred cCCCccEEEEEECCCCC-EEEEEECCCEEEEEEe----eCCccc---ceeEEEec----------cccCeeEEEEcCCCC
Q 001367 393 RDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDA---RQQLEIDA----------HVGNVNDLAFSAPCK 454 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~----~~~~~~---~~~~~~~~----------h~~~v~~~~~s~d~~ 454 (1091)
..|...|.+++|+|+|+ +||+|+.|+.|++|++ .+++.+ .....+.. |...|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34678999999999999 9999999999999999 877620 01112333 688999999999999
Q ss_pred ceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCc---
Q 001367 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG--- 531 (1091)
Q Consensus 455 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 531 (1091)
+|++++.||.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 899999999999999 78888999999999999999955 6679999999999999999998888877777666
Q ss_pred ------------EEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC
Q 001367 532 ------------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1091)
Q Consensus 532 ------------i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d 599 (1091)
+.+++|++++. +++++. ++.|++||+.+++.+..+..|. ..|.+++|+|+++++++++.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d 268 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDD 268 (425)
T ss_dssp ---------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETT
T ss_pred eeeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCC
Confidence 89999999865 556654 6679999999999888888777 899999999999999999999
Q ss_pred CeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccc
Q 001367 600 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1091)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1091)
+.|++||+.+++.+..+..
T Consensus 269 ~~i~i~d~~~~~~~~~~~~------------------------------------------------------------- 287 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCFYG------------------------------------------------------------- 287 (425)
T ss_dssp SCEEEECSSSBSCSEEECC-------------------------------------------------------------
T ss_pred CEEEEEECCCCccceEecC-------------------------------------------------------------
Confidence 9999999887633322221
Q ss_pred cccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEE
Q 001367 680 GAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 759 (1091)
Q Consensus 680 ~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~v 759 (1091)
T Consensus 288 -------------------------------------------------------------------------------- 287 (425)
T 1r5m_A 288 -------------------------------------------------------------------------------- 287 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEe
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI 838 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~ 838 (1091)
|...+.+++|+|++ ++++++ ++.|++||+.+++.+..+
T Consensus 288 ----------------------------------------~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 326 (425)
T 1r5m_A 288 ----------------------------------------HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS 326 (425)
T ss_dssp ----------------------------------------CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ----------------------------------------CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence 23334444555555 444443 455666666666666666
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc--------------------eeeeeccccC--CeEEEEECCC
Q 001367 839 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--RVTGLVFSDA 896 (1091)
Q Consensus 839 ~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~spd 896 (1091)
..|...+.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|+
T Consensus 327 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 405 (425)
T 1r5m_A 327 IVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA 405 (425)
T ss_dssp ECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred ccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence 66777888899998 78889999999999999998887 8899999976 9999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 001367 897 LNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 897 g~~las~s~Dg~i~vwd~~~ 916 (1091)
+++|++++.||.|++||++.
T Consensus 406 ~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 406 GNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp SSEEEEEESSSCCEEEECCC
T ss_pred CceEEEEecCceEEEEeecC
Confidence 99999999999999999863
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=341.79 Aligned_cols=303 Identities=15% Similarity=0.232 Sum_probs=246.3
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
+|.+.|++++|||||+ +||+|+ +++++||++.+|+.+.......-... ....+.......+...|.+++|+|||++|
T Consensus 62 ~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-DPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccccc-ccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999999998 668876 68999999999987754211000000 00000000111234469999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
|+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++++...+. +...+.++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 999999999999999876544 6789999999999999999 89999999999999999999888776 56678999
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeee-------cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
++++. ++.++++++.||.|++||++++.....+ ..|...|.+++|+|++++|++++. ++.|++||+.+
T Consensus 213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN 287 (393)
T ss_dssp EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence 98653 6689999999999999999988766555 467789999999999999999986 67799999876
Q ss_pred c------------eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 565 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 565 ~------------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
. .+...+.+|. ..|.+++|+|++.++++|+.|+.|++||..+++.+..+..|.. .|.+++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~~~~ 362 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVAN 362 (393)
T ss_dssp -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECS
T ss_pred CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEEecC
Confidence 3 3445666666 8899999999999999999999999999999999999887755 689999876
Q ss_pred ------CCCEEEEEECCCeEEEEECCC
Q 001367 633 ------NGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 633 ------~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
++++|++|+.||+|++|++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=330.01 Aligned_cols=269 Identities=19% Similarity=0.251 Sum_probs=241.9
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
++.+|...|.+++|+|++++||+++.||+|++||+.++..++ .+..|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence 377899999999999999999999999999999999986554 6788999999999999999 89999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-eeeecCCCCcEEEEEEcC-CCCEEEEEe
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCG 548 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~-d~~~l~~~~ 548 (1091)
|+.+++++..+.+|...|.+++|+| ++.+|++++.||+|++||+++... ...+..|...|.+++|+| ++..+++++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9999999999999999999999965 567999999999999999988744 456788999999999999 678999988
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCc
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1091)
. ++.|++||+.++.....+..+. ...+..+.|+| ++.++++++.|++|++||+.+++.+..+..|.. .|.
T Consensus 161 ~----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~ 232 (304)
T 2ynn_A 161 L----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVS 232 (304)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEE
T ss_pred C----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEE
Confidence 6 6779999998887766665433 36788999986 678999999999999999999999999987755 689
Q ss_pred eEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecc
Q 001367 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1091)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 674 (1091)
+++|+|++++|++++.||+|++||..+++....+..+...+.+++++|
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 999999999999999999999999999999999999999999999853
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=356.97 Aligned_cols=356 Identities=13% Similarity=0.177 Sum_probs=275.1
Q ss_pred CCcEEEEEcCCCceEEEEE----------cCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg----------~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..|.+++|||+|+.++|+| +.|+.|+|||+.+++..... ....|...|.+++|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~v~~~~~ 75 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-----------------ASLQVDSKFNDLDW 75 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-----------------CCCCCSSCEEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-----------------EEEecCCceEEEEE
Confidence 4899999999998688999 88999999999988633110 02358899999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcc-cceeEEEeccccCeeEEEEcCC-CCceEEEEeeCCCcEEEEeCCCCc------
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------ 476 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~------ 476 (1091)
+|++++|++++.|+.|++||+.+... ......+.+|...|.+++|+|+ ++ +|++++.|+.|++||+.+++
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccc
Confidence 99999999999999999999987211 1234467899999999999998 66 79999999999999999887
Q ss_pred eeE---EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC------CCcEEEEEEcCCC-CEEEE
Q 001367 477 RTY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFS 546 (1091)
Q Consensus 477 ~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~d~-~~l~~ 546 (1091)
... .+..|...|.+++|++. ++.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .++++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred cccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 333 34679999999999654 2579999999999999999998888877776 6789999999997 57777
Q ss_pred EecCCCCceEEEEEecCCc-eeeEEEe-cccccccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001367 547 CGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~v~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
++.++ .++.|++||+.++ ..+..+. +|. ..|.+++|+| +++++++++.||.|++||+.+++.+..+..+..
T Consensus 233 ~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-- 306 (416)
T 2pm9_A 233 ATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-- 306 (416)
T ss_dssp EECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS--
T ss_pred EECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC--
Confidence 76532 1237999999986 5666676 666 8999999999 899999999999999999999999999987654
Q ss_pred CCceEEEccCC-CEEEEEECCCeEEEEECCCCCeeccccc--ccccceeeeeccccccccc------------cccCCcc
Q 001367 624 ENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTGA------------GIANGSV 688 (1091)
Q Consensus 624 ~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~------------~~~~g~~ 688 (1091)
.|.+++|+|++ .++++++.|+.|++|++.+......... .........+.+.+...+. ......+
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS 386 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS
T ss_pred ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc
Confidence 68999999998 8999999999999999987754433211 0000000001000000000 0011122
Q ss_pred cCCCCCCCCCcccccccccccccccccc
Q 001367 689 SNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 689 ~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
....++|+|+++++++.|++|++|++..
T Consensus 387 ~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 387 PAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 2334489999999999999999999863
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=376.28 Aligned_cols=523 Identities=13% Similarity=0.057 Sum_probs=376.4
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
+...+.+.+|||+ ++ |..+. +.|.+|++.+|+... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~i-af~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--RI-IFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--EE-EEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--EE-EEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4558999999974 45 44443 789999998886543 667999999999999999999
Q ss_pred EEECC------CEEEEEEeeCCcccceeEEEeccccCe-------eEEEEcCCCCceEEEEeeCC------CcEEEEeCC
Q 001367 413 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV 473 (1091)
Q Consensus 413 s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~ 473 (1091)
+++.+ ..|++|++.+++. ..+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 3799999988752 2567888888 9999999998 67777754 468888887
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEec------------CCeEEEEecCCCCceeeecCCCCcEEEEEEcCCC
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 541 (1091)
+++.. .+..+. ...++|++ | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77653 333332 34556754 5 7777653 344667754444555566788889999999988
Q ss_pred CEEEEEecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1091)
..++++.. ++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+. ++.|++|++...+. ..+..+.
T Consensus 215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l-~~l~~~~ 284 (1045)
T 1k32_A 215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI-EKIEIGD 284 (1045)
T ss_dssp EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE-EECCCCC
T ss_pred EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceEe-eeeccCc
Confidence 44444432 33355565432 33334444433 356679999999988874 89999999955443 3444321
Q ss_pred ---------CCCCCceEEEc-cCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccC
Q 001367 621 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSN 690 (1091)
Q Consensus 621 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~ 690 (1091)
+...+..++|+ |||+++++++ ++.+++|+..++.... +.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~----------------------------- 333 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP----------------------------- 333 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence 11247899999 9999999888 6889999876543211 10
Q ss_pred CCCCCCCCcccccccccccccccccccCCcccceeecCCccccc-cEEEEEEecCCCeEEEeecCceEE-EeecCCcccc
Q 001367 691 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDLT 768 (1091)
Q Consensus 691 ~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~dg~i~-vw~~~~~~~~ 768 (1091)
.+.. .+..++|+ ||+.++.++.++.+. +|++...
T Consensus 334 ----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~--- 369 (1045)
T 1k32_A 334 ----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG--- 369 (1045)
T ss_dssp ----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC---
T ss_pred ----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC---
Confidence 0223 67788889 888888888777777 7775432
Q ss_pred cccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEE
Q 001367 769 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATS 847 (1091)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~ 847 (1091)
. ... +. ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.+
T Consensus 370 -------------------~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~ 425 (1045)
T 1k32_A 370 -------------------K-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 425 (1045)
T ss_dssp -------------------C-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred -------------------C-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence 1 111 11 3667899999999999999988 689999999999988888788889999
Q ss_pred EEEcCCCCcEEEEEeCCC----------eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001367 848 LAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 917 (1091)
Q Consensus 848 l~~s~~~~~~la~g~~dg----------~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~ 917 (1091)
++||| ||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+....
T Consensus 426 ~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 426 FTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp EEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred eEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence 99999 899888887644 99999999887 6778888888999999999999999999888888876433
Q ss_pred ceeee-----eee--e---------------------ccCCC-------cCCCCCceEEEEcCCCCEEEE----------
Q 001367 918 GIQTC-----RSL--Q---------------------TPDGV-------MTLAPSETHIQFHKDQTRFLL---------- 952 (1091)
Q Consensus 918 ~~~~~-----~~~--~---------------------~~~~~-------~~~~~~i~~l~fs~dg~~la~---------- 952 (1091)
..... ..+ . ...+. ......+..++|+|||+++++
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~ 583 (1045)
T 1k32_A 504 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 583 (1045)
T ss_dssp CEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHH
T ss_pred ccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCccccc
Confidence 22000 000 0 00110 001135789999999998875
Q ss_pred --E--ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 953 --V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 953 --~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
+ ....+.+||+.+++.... . ..+.+++|||||++|++++.+ .|++||+.+++
T Consensus 584 ~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 584 YQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 234789999988875332 2 568899999999999998766 89999998887
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=347.27 Aligned_cols=290 Identities=15% Similarity=0.167 Sum_probs=255.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|.+.|++++|+|++++||+|+.|++|+|||+.+++... .+.+|...|.+++|+|+|+ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 78999999999999999999999999999999999886544 6789999999999999999 899999999999999
Q ss_pred CCCCc-------eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee-----cCCCCcEEEEEEcC
Q 001367 472 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA 539 (1091)
Q Consensus 472 ~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s~ 539 (1091)
+.+.. ....+.+|.+.|.++.|.+.. +..|++++.|++|++||+.++.....+ ..|...+.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 345678999999999997653 357999999999999999998877665 56778899999987
Q ss_pred -CCCEEEEEecCCCCceEEEEEecC-CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001367 540 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 540 -d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1091)
+++++++++. ++.|++||++ .+..+..+.+|. ..|.+++|+|++++|++++.||+|++||+.+++.+..+.
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 8889999986 6679999998 557788888887 899999999999999999999999999999999988876
Q ss_pred CCCC-----CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccc----ccccccceeeeeccccccccccccCCcc
Q 001367 618 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1091)
Q Consensus 618 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~g~~ 688 (1091)
.+.. ...+.+++|+|+|+++++|+.||.|++||...++....+ .+|...|.+++|
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~---------------- 352 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL---------------- 352 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE----------------
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE----------------
Confidence 5432 234789999999999999999999999999988776655 678899999999
Q ss_pred cCCCCCCCCCccccccccccccccccc
Q 001367 689 SNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 689 ~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|+++.+++++.|++|++|++.
T Consensus 353 -----s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 353 -----SSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp -----CSSSSEEEEECTTSCEEEEECC
T ss_pred -----CCCCCEEEEeeCCCCEEEEecC
Confidence 8889999999999999999976
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=329.62 Aligned_cols=303 Identities=18% Similarity=0.263 Sum_probs=260.3
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+..+|+||++.|++|+|+|++..+||||+.||+|+|||+.+++.... .....+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEEEE
Confidence 455689999999999999998544889999999999999988765432 122337899999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-EEecC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG 483 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~ 483 (1091)
+|||++|++++.|+.|++|+...+.... ....+...+..+.+++++. ++++++.|+.+++||+...... ....+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998875443 4567888899999999999 7999999999999998766543 44578
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
|...+..++|++.+...++++++.|+.|++||+.+.+....+..+...|.+++|+|++++|++++. ++.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999988877789999999999999999999999999999999999999999999999986 6779999999
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-------CCCCCCceEEEccCCCE
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTL 636 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~ 636 (1091)
+++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+... .+...|.+++|+|++++
T Consensus 246 ~~~~~~~~~~~~----~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 246 EGKHLYTLDGGD----IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTEEEEEEECSS----CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred cCceeeeecCCc----eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 999988887644 799999999865 566677999999999998887766432 33457899999999999
Q ss_pred EEEEECCCeEEEEECCCCC
Q 001367 637 LAVIANENRIKILETPESN 655 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~ 655 (1091)
|++|+.||.|++||+.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999998774
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=325.16 Aligned_cols=296 Identities=21% Similarity=0.278 Sum_probs=251.9
Q ss_pred eecCCCccEEEEEECCCC-CEEEEEECCCEEEEEEeeCCcc--cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcE
Q 001367 391 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1091)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... ......+.+|...|.+++|+|+++ +|++++.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 488999999999999965 8999999999999999976432 123446889999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCC------C
Q 001367 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G 541 (1091)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d------~ 541 (1091)
++||+.+++.+..+.+|...|.+++|++ ++.++++++.|+.|++||++. .....+..|...+.++.++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999999999999999999999999954 668999999999999999864 556677888899999999985 4
Q ss_pred CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1091)
..+++++. ++.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+.
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 238 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD- 238 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS-
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-
Confidence 47888876 6679999999999998998887 899999999999999999999999999999999998887653
Q ss_pred CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccc
Q 001367 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEI 701 (1091)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~ 701 (1091)
.+.+++|+|++.++++++.+ .+++|++.....+..+..+...
T Consensus 239 --~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~----------------------------------- 280 (319)
T 3frx_A 239 --EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG----------------------------------- 280 (319)
T ss_dssp --CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred --cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence 58999999999999988765 5999998765443332211000
Q ss_pred ccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecC
Q 001367 702 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 763 (1091)
Q Consensus 702 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~ 763 (1091)
....+...+.+++|+|||++|++++.||.|++|++.
T Consensus 281 --------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 281 --------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp --------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred --------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 001145678899999999999999999999999964
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-36 Score=331.54 Aligned_cols=324 Identities=13% Similarity=0.163 Sum_probs=271.6
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
|.++|.+++|||||+ +++++..++.+.+|+......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 456899999999998 567777666666665433222211 447999999999999999999
Q ss_pred EEECCCEEEEEEeeCCcccceeEEEe--ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc--eeEEecCCCcce
Q 001367 413 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 488 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v 488 (1091)
+++ |+.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999877655554555 7999999999999999 89999999999999999887 667788899999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999965 6689999999999999999998888888889999999999999999999986 667999999999888
Q ss_pred EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEE
Q 001367 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1091)
..+.. . ..+.+++|+|+++++++++.++.|++||+.+++... +..+ ...+.+++|+|+++++++++.||.|++
T Consensus 219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCC--ccceeEEEECCCCCEEEEecCCCcEEE
Confidence 77753 3 689999999999999999999999999999887653 3333 346899999999999999999999999
Q ss_pred EECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecC
Q 001367 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 728 (1091)
Q Consensus 649 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 728 (1091)
|++.+++.....
T Consensus 292 ~~~~~~~~~~~~-------------------------------------------------------------------- 303 (337)
T 1gxr_A 292 WRTPYGASIFQS-------------------------------------------------------------------- 303 (337)
T ss_dssp EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred EECCCCeEEEEe--------------------------------------------------------------------
Confidence 999876443111
Q ss_pred CccccccEEEEEEecCCCeEEEeecCceEEEeec
Q 001367 729 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 729 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
.+...+.+++|+|+++.+++++.||.+++|++
T Consensus 304 --~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 --KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp --ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred --cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 14456788888888888888888999998875
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=330.67 Aligned_cols=298 Identities=16% Similarity=0.198 Sum_probs=239.9
Q ss_pred cccc-cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEe
Q 001367 731 VKAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 809 (1091)
Q Consensus 731 ~~~~-~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 809 (1091)
+|.. .|..++|+|+|++|++++.|+.+++|++..... .....+ ..+|...|.+++|
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~-~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVL-SEGHQRTVRKVAW 69 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEE-CSSCSSCEEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeee-ccccCCcEEEEEE
Confidence 3665 899999999999999999999999999754321 000001 1258999999999
Q ss_pred cCCCCEEEEEe-CCeEEEEEccCc--eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc---eeeeecc
Q 001367 810 SKNDAYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---VISKLEG 883 (1091)
Q Consensus 810 s~dg~~la~~~-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~---~~~~l~~ 883 (1091)
+|+|++|++++ |+.+++|++.++ +++..+.+|...|.+++|+| ++++|++|+.|++|++||+.++. ++..+.+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence 99999999998 899999998876 46788999999999999999 89999999999999999998763 4677889
Q ss_pred ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEE
Q 001367 884 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 962 (1091)
Q Consensus 884 h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd 962 (1091)
|...|.+++|+|++++|++++.|++|++||+.++.. .+...+.+|.. .|.+++|+|+|++|++ +.|++|++||
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 999999999999999999999999999999987542 23455667765 8999999999999999 5889999999
Q ss_pred cCCc---------------ceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCce----EEEeecccccCC
Q 001367 963 AEEL---------------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV----QCRILSTAYLRP 1023 (1091)
Q Consensus 963 ~~~~---------------~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~ 1023 (1091)
.... +++..+...|...|.+++|+|++.+|++++.|+.|++|+...+.. ...+. ....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~---~~~~ 299 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT---AHLH 299 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE---EEET
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE---eeec
Confidence 6322 233343344889999999999999999999999999999876532 11111 0011
Q ss_pred CCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1024 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1024 ~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
..|...|. +++|+|+++.+|++|+.||+|++|++....
T Consensus 300 ~~h~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 300 QAHSQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TSSSSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred ccccCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 12455565 789999655699999999999999997655
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=323.98 Aligned_cols=291 Identities=20% Similarity=0.286 Sum_probs=260.1
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
.+.+|...|++++|+|++++||+|+.|+.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 478999999999999999999999999999999998886544 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
|+.+++++..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+..+..++.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999965 6679999999999999999999988899999999999999999999999986
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.|+.|++||+.+++.+..+..+..........+
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 5679999999998887765433 46799999999999999999999999999999999998887655333333444
Q ss_pred c-cCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccc--ccc
Q 001367 631 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVE--AEN 707 (1091)
Q Consensus 631 s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~--~d~ 707 (1091)
+ +++.++++++.||.|++||+.+++.+..+.+|...|.++++ +|+++.+++++ .|+
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~---------------------~p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC---------------------HPTENIIASAALENDK 303 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEE---------------------CSSSSEEEEEECTTTC
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEee---------------------cCcCCceEEEEccCCc
Confidence 4 67889999999999999999999999999999999999999 67788888876 689
Q ss_pred cccccccc
Q 001367 708 KSEVEKPL 715 (1091)
Q Consensus 708 ~i~~w~~~ 715 (1091)
+|++|+.+
T Consensus 304 ~i~~W~~d 311 (312)
T 4ery_A 304 TIKLWKSD 311 (312)
T ss_dssp CEEEEECC
T ss_pred cEEEecCC
Confidence 99999864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=364.35 Aligned_cols=529 Identities=10% Similarity=0.022 Sum_probs=371.2
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC------CCcEE
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK 468 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~------d~~i~ 468 (1091)
+...+.+.+||| ++||.++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456788999995 58888876 68999999887532 4678999999999999999 5666543 34799
Q ss_pred EEeCCCCceeEEecCCCcce-------EEEeecccCCceEEEEEecC------CeEEEEecCCCCceeeecCCCCcEEEE
Q 001367 469 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1091)
+||+.+++ ...+..|...+ ..++|+| ||+++++++.+ ..|..|++..+........ ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCC---Cccee
Confidence 99988876 67788888888 8899955 66677777754 3577777766544332222 23457
Q ss_pred EEcCCCCEEEEEecCCC--------CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 536 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
+|+| | .++++....+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777643211 12224444322223344556665 88999999988 56667778898899976
Q ss_pred CC-CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCC
Q 001367 608 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1091)
Q Consensus 608 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g 686 (1091)
.. +.....+..+. .+..++|+|||++++.+. ++.|++|+..... +..+..+...
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~-------------------- 286 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLE-------------------- 286 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCC--------------------
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccc--------------------
Confidence 53 33444444333 357789999999998874 7899999984322 2121110000
Q ss_pred cccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEe-cCCCeEEEeecCceEEEeecCCc
Q 001367 687 SVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRN 765 (1091)
Q Consensus 687 ~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~dg~i~vw~~~~~ 765 (1091)
... .| ..+...+..++|+ |||+.+++++ ++.+.+|+....
T Consensus 287 --------------------~~~-~~-----------------~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~ 327 (1045)
T 1k32_A 287 --------------------SPE-DR-----------------IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT 327 (1045)
T ss_dssp --------------------BCC-SE-----------------EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS
T ss_pred --------------------ccc-cc-----------------cccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC
Confidence 000 00 0144567789999 9999888877 788888875432
Q ss_pred ccccccceeeccCCccccCCCCCceeeecCCCCCCCC-CeeEEEecCCCCEEEEEeC-CeEE-EEEccCceeEEEecCCC
Q 001367 766 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPPS 842 (1091)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~s~dg~~la~~~d-g~i~-iwd~~~~~~~~~~~~~~ 842 (1091)
. ... +. .+.. .+..++|+ ||+.++++++ +.+. +|++.+++... +..+.
T Consensus 328 ~-----------------------~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~ 378 (1045)
T 1k32_A 328 Y-----------------------VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENL 378 (1045)
T ss_dssp B-----------------------EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCC
T ss_pred c-----------------------eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCc
Confidence 1 111 11 2455 78899999 9999999884 6688 88988776544 44777
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCC----------cEEEE
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFVW 912 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg----------~i~vw 912 (1091)
..+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++|
T Consensus 379 ~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 379 GNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp CSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred cceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 8999999999 899999999999999999999998888878999999999999999999887654 89999
Q ss_pred EcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcce-----------------------
Q 001367 913 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC----------------------- 968 (1091)
Q Consensus 913 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~----------------------- 968 (1091)
|+.+++ ...+..+.. .+..++|+|||++|+.+ .++...+|+......
T Consensus 458 d~~~g~------~~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1045)
T 1k32_A 458 DMEGRK------IFAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 528 (1045)
T ss_dssp ETTTTE------EEECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGC
T ss_pred ECCCCc------EEEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCcccc
Confidence 999864 122233332 57789999999999884 445555554322111
Q ss_pred -------------------eeeeecCCccCEEEEEEeeCCCEEEE-------------EEcCCcEEEEeCCCCceEEEee
Q 001367 969 -------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 969 -------------------~~~~~~~h~~~v~~v~fs~dg~~l~t-------------~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
....+..|.+.+..++|+|||+++++ ...+..|.+||+.+++.....
T Consensus 529 ~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~- 607 (1045)
T 1k32_A 529 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK- 607 (1045)
T ss_dssp CCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-
T ss_pred CcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-
Confidence 01112345678999999999987775 122457888999888754222
Q ss_pred cccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1017 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1017 ~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
..+ ..++++| ||+.|++++.+ .|++|++....
T Consensus 608 -----------~~v--~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 -----------NNL--TDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp -----------EEE--EEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred -----------cCc--ceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 112 3568999 58999988866 89999996654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=319.52 Aligned_cols=306 Identities=15% Similarity=0.177 Sum_probs=230.4
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
+.+.+..+.+|. ..|.+++|+|+ +|++|+.|++|++||+.++ +....+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 455677788887 89999999987 8999999999999999875 4455553322445799999999999999999
Q ss_pred CCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcc
Q 001367 642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 721 (1091)
Q Consensus 642 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~ 721 (1091)
.|++|++|+........
T Consensus 78 ~D~~v~iw~~~~~~~~~--------------------------------------------------------------- 94 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT--------------------------------------------------------------- 94 (330)
T ss_dssp TTSCEEEEEC----------------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc---------------------------------------------------------------
Confidence 99999999975321000
Q ss_pred cceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCC
Q 001367 722 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 801 (1091)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1091)
.... + +.. + .+|.
T Consensus 95 ---------------------~~~~-~--------~~~-----------------------------------~--~~h~ 107 (330)
T 2hes_X 95 ---------------------FEMD-L--------LAI-----------------------------------I--EGHE 107 (330)
T ss_dssp ---------------------CCCE-E--------EEE-----------------------------------E--C---
T ss_pred ---------------------ccce-e--------EEE-----------------------------------E--cCCC
Confidence 0000 0 000 0 0367
Q ss_pred CCeeEEEecCCCCEEEEEe-CCeEEEEEccC----ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc-
Q 001367 802 EAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS- 875 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~- 875 (1091)
..|.+++|+|+|++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus 108 ~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~ 186 (330)
T 2hes_X 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD 186 (330)
T ss_dssp -CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC
Confidence 7788888888888888877 68888888732 356778889999999999999 8999999999999999999876
Q ss_pred -ceeeeeccccCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCce---eeeeeeeccCC-CcCCCCCceEEEEcCCCC
Q 001367 876 -EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 876 -~~~~~l~~h~~~V~~l~~spd--g~~las~s~Dg~i~vwd~~~~~~---~~~~~~~~~~~-~~~~~~~i~~l~fs~dg~ 948 (1091)
+++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+.++.. ....+.....+ |.. .|.+++|++++.
T Consensus 187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~~ 263 (330)
T 2hes_X 187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR---QVYNVAWGFNGL 263 (330)
T ss_dssp EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS---CEEEEEECTTSC
T ss_pred eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc---ceEEEEEcCCCE
Confidence 678899999999999999998 77999999999999999975321 11123333333 444 799999998775
Q ss_pred EEEEEecCeEEEEEcCCcc--eeeeeecCCcc-CEEEEEEee--CCCEEEEEEcCCcEEEEeCCC
Q 001367 949 RFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 949 ~la~~~d~~i~vwd~~~~~--~~~~~~~~h~~-~v~~v~fs~--dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
++..+.|+.|++||..+++ .......+|.. .|.+++|+| ++++|++++.||+|++|++..
T Consensus 264 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 4444789999999998774 34444467876 899999999 789999999999999999865
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=344.08 Aligned_cols=382 Identities=13% Similarity=0.136 Sum_probs=286.9
Q ss_pred EEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeee-cCCCccEEEEEECC-CCCEEEEEECCC
Q 001367 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYSKH 418 (1091)
Q Consensus 341 ~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp-dg~~las~~~d~ 418 (1091)
.|+|+++ .+++++ .|+ .+|+.+.. + .+|...|++++|+| ++++||+|+.|+
T Consensus 34 ~f~~~~~-~~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg 86 (437)
T 3gre_A 34 EFGPIQE-IVRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSDQG 86 (437)
T ss_dssp GGCCCCC-CCCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEETTS
T ss_pred hcCCccc-cccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecCCc
Confidence 4789998 445544 377 45555543 4 78999999999999 999999999999
Q ss_pred EEEEEEeeC---CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC---CCceeEEecCCCcceEEEe
Q 001367 419 IVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLC 492 (1091)
Q Consensus 419 ~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~~~~ 492 (1091)
+|+|||+.+ +...+....+ +|...|.+++|+|+++ +|++++.||.|++||+. +++.+..+.+| .+..+.
T Consensus 87 ~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~ 161 (437)
T 3gre_A 87 VIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKIN 161 (437)
T ss_dssp EEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEE
T ss_pred eEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEE
Confidence 999999987 5433333333 5999999999999999 89999999999999994 77777776666 677776
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEE--EcCCCCEEEEEecCCCCceEEEEEecCCceeeEE
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1091)
+++.+ +...+.++. +++++.++++++. ++.|++||+.+++.+..
T Consensus 162 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 162 LKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQI 207 (437)
T ss_dssp GGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEE
T ss_pred ccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEE
Confidence 65431 112334444 6789999999986 67799999999999999
Q ss_pred Eec--ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc----cCCCEEEEEECCC
Q 001367 571 YQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIANEN 644 (1091)
Q Consensus 571 ~~~--~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg 644 (1091)
+.+ |. ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+ +++.+|++++.||
T Consensus 208 ~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 208 IENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred EccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCC
Confidence 988 55 8999999999999999999999999999999999988863322 368899555 5688999999999
Q ss_pred eEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccce
Q 001367 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 724 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 724 (1091)
.|++||+.+++.+..+.++...+..+.++| +++.+...
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~l~~~--------------------- 321 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLP---------------------IEKGLEEL--------------------- 321 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSC---------------------BCSSGGGC---------------------
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecc---------------------cccccccc---------------------
Confidence 999999999988888887776666555532 22211000
Q ss_pred eecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCe
Q 001367 725 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 804 (1091)
Q Consensus 725 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 804 (1091)
. +.+..|...|
T Consensus 322 -------------------------------~--------------------------------------~~~~~~~~~v 332 (437)
T 3gre_A 322 -------------------------------N--------------------------------------FCGIRSLNAL 332 (437)
T ss_dssp -------------------------------C--------------------------------------CCCCCSGGGG
T ss_pred -------------------------------e--------------------------------------ecccccCCce
Confidence 0 0001267788
Q ss_pred eEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCC---CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee
Q 001367 805 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 880 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~ 880 (1091)
.+++|+ ++++|++++ |+.|++||+.+++....+.+|. .......+++ ...+++.. |+...+.....
T Consensus 333 ~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~ 402 (437)
T 3gre_A 333 STISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDD 402 (437)
T ss_dssp CCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC---------
T ss_pred EEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCc
Confidence 999999 778888887 8999999999999988888754 3455666666 55444433 33344455566
Q ss_pred eccccCCeEEEEECCC--CCEEEEEeCCCcEEEEE
Q 001367 881 LEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 881 l~~h~~~V~~l~~spd--g~~las~s~Dg~i~vwd 913 (1091)
...|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 6779999999999988 78999999999999995
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=338.66 Aligned_cols=347 Identities=13% Similarity=0.116 Sum_probs=280.6
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++++.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345579999999999999999999999999876554 23344 4455567899999 89999999999999999999
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
....+.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 9999899999999999965 6679999999999999999999999999999999999999999999999986 566
Q ss_pred EEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCE
Q 001367 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1091)
|++||+.+++.+..+..+..+...+.+++|.|.+...+ .. .....+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL---------------------HE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC---------------------GG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee---------------------ee--cccCcccceEEcCCCCE
Confidence 99999999999999988766678899998877643220 01 11235788999999999
Q ss_pred EEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccc
Q 001367 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
+++++.||.|++||+.++.....+.
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~~------------------------------------------------------- 286 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQLP------------------------------------------------------- 286 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEEcc-------------------------------------------------------
Confidence 9999999999999987543221100
Q ss_pred cCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCC
Q 001367 717 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 796 (1091)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1091)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 3vl1_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEecCCCC-EEEEEe-CCeEEEEEccCcee-EEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEec
Q 001367 797 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 797 ~~~~~~~v~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
.+|...|.+++|+|++. ++++++ ||.|++||+.+++. +..+.. +...+.++.+. ++++|++++.||.|++|++
T Consensus 287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence 01455677777777777 777776 57788888877643 555655 56677888654 5789999999999999999
Q ss_pred cCc---------ceeeeeccccCCeEEEEECCCCC---EEEEEeCCCcEEEEEcCC
Q 001367 873 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 873 ~~~---------~~~~~l~~h~~~V~~l~~spdg~---~las~s~Dg~i~vwd~~~ 916 (1091)
.+. .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 873 22334667889999999999999 788888999999999875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=319.36 Aligned_cols=320 Identities=14% Similarity=0.143 Sum_probs=262.1
Q ss_pred cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC
Q 001367 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1091)
Q Consensus 440 h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 519 (1091)
|.++|.+++|+|||+ +++++..++.+.+|+...........+|...|.+++|+ +++.++++++ ||.|++||+.+.
T Consensus 8 ~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~~~~-dg~i~iw~~~~~ 82 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTIS--NPTRHVYTGG-KGCVKVWDISHP 82 (337)
T ss_dssp EEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEEC--SSSSEEEEEC-BSEEEEEETTST
T ss_pred cCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEe--cCCcEEEEcC-CCeEEEEECCCC
Confidence 566899999999999 78777777777777666555555555799999999995 4678999998 999999999876
Q ss_pred Ccee---eec--CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce--eeEEEecccccccceEEEEEcCCCCE
Q 001367 520 GARV---DYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1091)
Q Consensus 520 ~~~~---~~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~ 592 (1091)
.... .+. .+...+.+++|+|+++++++++. ++.|++||+.+++ ....+..+. ..+.+++|+|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~ 155 (337)
T 1gxr_A 83 GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSA---PACYALAISPDSKV 155 (337)
T ss_dssp TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSS---SCEEEEEECTTSSE
T ss_pred CceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCC---CceEEEEECCCCCE
Confidence 5433 222 67889999999999999999876 6679999999887 555666665 78999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeee
Q 001367 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
+++++.||.|++||+.+++.+..+..+.. .+.+++|+|+++++++++.||.|++||+.+++....+
T Consensus 156 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------------ 221 (337)
T 1gxr_A 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH------------ 221 (337)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE------------
T ss_pred EEEEeCCCcEEEEeCCCCceeeeeecccC--ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee------------
Confidence 99999999999999999999988876544 6899999999999999999999999998754221110
Q ss_pred ccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEee
Q 001367 673 NPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 752 (1091)
Q Consensus 673 ~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 752 (1091)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccC
Q 001367 753 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT 831 (1091)
Q Consensus 753 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~ 831 (1091)
.+...+.+++|+|+++++++++ ++.|++||+.+
T Consensus 222 ----------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 222 ----------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp ----------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred ----------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 0233456666677777777666 56777777776
Q ss_pred ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEE
Q 001367 832 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 911 (1091)
Q Consensus 832 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~v 911 (1091)
++.. .+..|...|.+++|+| ++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++
T Consensus 256 ~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 332 (337)
T 1gxr_A 256 PDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp SCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCeE-EEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEE
Confidence 6543 4567889999999999 8999999999999999999998877544 48899999999999999999999999999
Q ss_pred EEc
Q 001367 912 WDV 914 (1091)
Q Consensus 912 wd~ 914 (1091)
|++
T Consensus 333 w~~ 335 (337)
T 1gxr_A 333 YEV 335 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.80 Aligned_cols=292 Identities=17% Similarity=0.219 Sum_probs=247.4
Q ss_pred CCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccc------------------cCeeEEEEcCCCCc
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 455 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~~~~s~d~~~ 455 (1091)
+|...|.+++|||||++||+|+ ++++++|++.+++.+. .+.+|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6789999999887554 343332 2499999999999
Q ss_pred eEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEE
Q 001367 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 456 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1091)
+|++|+.|+.|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999954 66799999999999999999887766655 44578999
Q ss_pred EEcC-CCCEEEEEecCCCCceEEEEEecCCceeeEEEecc----cccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001367 536 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 536 ~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1091)
+|+| +++++++++. ++.|++||+.++..+..+... ..|...|.+++|+|+++++++++.|+.|++||+.+.
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999 8999999986 566999999999887776321 123488999999999999999999999999999764
Q ss_pred e------------eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccc
Q 001367 611 Q------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1091)
Q Consensus 611 ~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1091)
. ....+..|. ..|.+++|+|++.+|++++.|+.|++||..++..+..+.+|...|.++++++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGHK--DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp ------------CEEEEEECCS--SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred CCcccccCCCCCcceEEEeccc--CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence 2 334454443 36899999999999999999999999999999999999999999999999764322
Q ss_pred ccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 679 TGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 679 ~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|+++.+++++.|++|++|++.
T Consensus 367 ---------------~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 367 ---------------GPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp ---------------CTTCEEEEEEETTSEEEEEEEE
T ss_pred ---------------CCCCCEEEEECCCCcEEECccc
Confidence 6889999999999999999975
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=355.68 Aligned_cols=299 Identities=18% Similarity=0.252 Sum_probs=253.2
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
....|.+|++.|++++|+|++..+|++|+.||+|+|||+.++..... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 34578899999999999998756889999999999999987543211 0112377999999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe---c
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E 482 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~ 482 (1091)
|++++|++|+.|++|+|||+.++...+ .+.+|...|.+++|+|+++ +|++++.|++|++||.......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999986554 6789999999999999999 7999999999999997654433222 4
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
+|...|.+++|++......+++++.|+.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6889999999987665578999999999999999999888899999999999999999999999986 667999999
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-----------------CCCC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPEN 625 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v 625 (1091)
.+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+
T Consensus 591 ~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
T 3dm0_A 591 AEGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665 (694)
T ss_dssp TTTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred CCCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence 999988776543 4799999999988777665 56699999999998877754321 1135
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.+++|+|+|++|++|+.||.|++|++.
T Consensus 666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 666 TSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 789999999999999999999999975
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=345.72 Aligned_cols=337 Identities=14% Similarity=0.188 Sum_probs=267.5
Q ss_pred cceEEEEEcCCCC-EEEEE----------eCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 579 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 579 ~~v~~v~~~~~~~-~l~~~----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
..+.+++|+|+++ +++++ +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 3678899999987 88888 899999999999876322211112334699999999999999999999999
Q ss_pred EEECCC----CCeecccccccccceeeeeccccccccccccCCcccCCCCCCC-CCcccccccccccccccccccCCccc
Q 001367 648 ILETPE----SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKED-VKPEISVEAENKSEVEKPLFARPSEC 722 (1091)
Q Consensus 648 iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~-~~~l~s~~~d~~i~~w~~~~~~~~~~ 722 (1091)
+|++.+ ......+.+|...|.+++| +|+ ++.+++++.|+.|++|++........
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~---------------------~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKF---------------------NAKQDNVLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEE---------------------CSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred EeecccccccccchhhccCCccceEEEEE---------------------cCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence 999987 3577888899999999999 555 66677777777777777652210000
Q ss_pred ceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCC
Q 001367 723 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 802 (1091)
Q Consensus 723 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1091)
. ...+... ...+|..
T Consensus 152 ~-------------------------------------------------------~~~~~~~----------~~~~~~~ 166 (416)
T 2pm9_A 152 N-------------------------------------------------------YTPLTPG----------QSMSSVD 166 (416)
T ss_dssp T-------------------------------------------------------CCCBCCC----------CSCCSSC
T ss_pred c-------------------------------------------------------ccccccc----------cccCCCC
Confidence 0 0000000 0014788
Q ss_pred CeeEEEecCC-CCEEEEEe-CCeEEEEEccCceeEEEecCC------CCCeEEEEEcCCCCcEEEEEeCCC---eEEEEe
Q 001367 803 AVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIYN 871 (1091)
Q Consensus 803 ~v~~l~~s~d-g~~la~~~-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~la~g~~dg---~i~iwd 871 (1091)
.|.+++|+|+ +.++++++ |+.|++||+.+++.+..+..+ ...+.+++|+|++..++++++.|+ .|++||
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d 246 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence 9999999999 78888887 799999999999999888876 788999999994457999999999 999999
Q ss_pred ccCc-ceeeeec-cccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC-
Q 001367 872 ARSS-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ- 947 (1091)
Q Consensus 872 ~~~~-~~~~~l~-~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg- 947 (1091)
+.++ +.+..+. +|...|++++|+| ++++|++++.|+.|++||+.+++ .+..+.+|.. .|.+++|+|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~-----~~~~~~~~~~---~v~~~~~s~~~~ 318 (416)
T 2pm9_A 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-----QLSQFPARGN---WCFKTKFAPEAP 318 (416)
T ss_dssp TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC-----EEEEEECSSS---CCCCEEECTTCT
T ss_pred CCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc-----cceeecCCCC---ceEEEEECCCCC
Confidence 9986 6777888 8999999999999 99999999999999999999865 3444445554 79999999999
Q ss_pred CEEEE-EecCeEEEEEcCCcceeeeee----------------------------------cCCccCEEEEEEeeCCCEE
Q 001367 948 TRFLL-VHETHLAIYEAEELTCLKQWF----------------------------------PISSVPISQATFSCDCRMV 992 (1091)
Q Consensus 948 ~~la~-~~d~~i~vwd~~~~~~~~~~~----------------------------------~~h~~~v~~v~fs~dg~~l 992 (1091)
.+|++ +.|+.|++||+.++....... ..|..++.+++|+|||++|
T Consensus 319 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 398 (416)
T 2pm9_A 319 DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLV 398 (416)
T ss_dssp TEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEE
T ss_pred CEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEE
Confidence 78888 578999999998776433210 1156778899999999999
Q ss_pred EEEEcCCcEEEEeCCCC
Q 001367 993 FTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 993 ~t~~~dg~v~iwd~~~~ 1009 (1091)
++++.||.|+||++.+.
T Consensus 399 a~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 399 QITPDGKGVSITNPKIS 415 (416)
T ss_dssp CBCTTSSCBCCBCCCCC
T ss_pred EEeCCCCeEEEEEeccC
Confidence 99999999999999875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=318.46 Aligned_cols=288 Identities=20% Similarity=0.223 Sum_probs=240.4
Q ss_pred eeecCCCccEEEEEE-----CC-CCCEEEEEECCCEEEEEEeeCCcc----cceeEEEeccccCeeEEEEcCCCCceEEE
Q 001367 390 ALVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVI 459 (1091)
Q Consensus 390 ~~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~ 459 (1091)
..+.+|...|++++| ++ |+++||+|+.|++|++||+.+++. ......+.+|...|.+++|+|++. +++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~ 92 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI 92 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence 348899999999999 77 999999999999999999986542 123446789999999999999999 899
Q ss_pred EeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec---CCCCcEEEEE
Q 001367 460 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMA 536 (1091)
Q Consensus 460 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~ 536 (1091)
+++.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+... ...... .+...+.+++
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeee
Confidence 999999999999999999999999999999999955 6679999999999999999743 222222 5677899999
Q ss_pred EcCCC----------CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001367 537 YSANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1091)
Q Consensus 537 ~s~d~----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd 606 (1091)
|+|++ .++++++. ++.|++|| ..++....+.+|. ..|.+++|+|++++|++|+.||.|++||
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred eccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99987 68888876 67799999 4566777788777 8999999999999999999999999999
Q ss_pred CC-CCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeec--ccc-----------cccccceeeee
Q 001367 607 MN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSV 672 (1091)
Q Consensus 607 ~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~v~~~~~ 672 (1091)
+. .......+... ..|.+++|+|++.+++++ .|+.|++|++.+..... .+. +|...+.+++|
T Consensus 242 ~~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 242 ILNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp SSCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred CCCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 94 44444444332 258999999999887765 56789999998765433 222 56677888888
Q ss_pred ccccccccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 673 NPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 673 ~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|+++.+++|+.||+|++|++.
T Consensus 318 ---------------------sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 318 ---------------------NALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp ---------------------CSSSCCEEEEETTSEEEEEEEE
T ss_pred ---------------------CCCCCeEEEecCCceEEEEEEE
Confidence 8889999999999999999976
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=338.44 Aligned_cols=332 Identities=13% Similarity=0.170 Sum_probs=266.6
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
.+++++|+|+|+ +|++|+.||.|++||+.+++.... +..| ..+....|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 456899999999 569999999999999988776542 3344 4555668899999999999
Q ss_pred CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecc
Q 001367 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1091)
.|+.|++||+.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+.+|...|.+++|++
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999876443 4578999999999999999 899999999999999999999999999999999999965
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCceeeecCC---C---------------------CcEEEEEEcCCCCEEEEEecCC
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---G---------------------LGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~---------------------~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
++.+|++++.||.|++||+++.+....+..+ . ..+.+++|+|+++++++++.
T Consensus 192 --~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-- 267 (420)
T 3vl1_A 192 --RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-- 267 (420)
T ss_dssp --TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET--
T ss_pred --CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC--
Confidence 6679999999999999999988877776542 2 33444556889999999886
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCee-EEEEeCCCCCCCCceEE
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~ 629 (1091)
++.|++||+.+++....+.... ...|.+++|+|+++ ++++++.||.|++||+.+++. +..+..+.. ..+.++
T Consensus 268 --dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~- 341 (420)
T 3vl1_A 268 --SGVITVHNVFSKEQTIQLPSKF--TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG-TPINNV- 341 (420)
T ss_dssp --TSCEEEEETTTCCEEEEECCTT--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT-SCEEEE-
T ss_pred --CCeEEEEECCCCceeEEccccc--CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC-CCceEE-
Confidence 5669999999998877775422 47899999999998 999999999999999998754 666665332 356666
Q ss_pred EccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccc
Q 001367 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKS 709 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i 709 (1091)
+.+++++|++++.|+.|++|++............... .
T Consensus 342 ~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~-------------------------------~----------- 379 (420)
T 3vl1_A 342 YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETP-------------------------------T----------- 379 (420)
T ss_dssp EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSC-------------------------------E-----------
T ss_pred EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCc-------------------------------c-----------
Confidence 4557889999999999999998764222111100000 0
Q ss_pred ccccccccCCcccceeecCCccccccEEEEEEecCCC---eEEEeecCceEEEeecC
Q 001367 710 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWP 763 (1091)
Q Consensus 710 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~---~l~~~~~dg~i~vw~~~ 763 (1091)
. ...+...|..++|+|++. .+++++.+|.+.+|++.
T Consensus 380 --------------~----~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 380 --------------F----LVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp --------------E----ECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred --------------E----EccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 0 012567888999999999 89999999999999864
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=327.55 Aligned_cols=302 Identities=12% Similarity=0.108 Sum_probs=256.7
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+.+++.+|.+.|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~ 70 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDV 70 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEE
Confidence 45678899999999999999 4 67999999999999999987211000 00116689999999999
Q ss_pred CCC----C---CEEEEEECCCEEEEEEeeCCcccc--eeEEEecc-----ccCeeEEEEc----CCCCceE-EEEeeCCC
Q 001367 405 SPD----G---SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAH-----VGNVNDLAFS----APCKQIS-VITCGDDK 465 (1091)
Q Consensus 405 spd----g---~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h-----~~~v~~~~~s----~d~~~~~-l~s~~~d~ 465 (1091)
+|+ + ++|++++.|+.|++||+.+++... ....+..| ...|.+++|+ |+++ + |++++.||
T Consensus 71 ~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg 148 (397)
T 1sq9_A 71 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKG 148 (397)
T ss_dssp EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTS
T ss_pred ecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCC
Confidence 999 9 999999999999999999987510 02356778 5899999999 9999 8 99999999
Q ss_pred cEEEEeCCC------CceeE-----Ee-------cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC
Q 001367 466 TIKVWDAVT------GSRTY-----SF-------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1091)
Q Consensus 466 ~i~iwd~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 527 (1091)
.|++||+.+ ++.+. .+ ..|...|.+++|++ ++ ++++++.||.|++||+++.+....+..
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 999999998 77776 77 44889999999955 66 999999999999999999888888887
Q ss_pred ---C---CCcEEEEEEcCCCCEEEEEecCCCCc---eEEEEEecCCceeeEEEec-------------ccccccceEEEE
Q 001367 528 ---P---GLGCTRMAYSANGRRLFSCGTSKEGE---SFLVEWNESEGAIKRTYQG-------------LQLQHNSVSVVH 585 (1091)
Q Consensus 528 ---~---~~~i~~~~~s~d~~~l~~~~~~~~~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~~v~ 585 (1091)
+ ...+.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |. ..|.+++
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~ 298 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLS 298 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEE
T ss_pred cccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccC---CcEEEEE
Confidence 7 889999999999999999876 5 7899999999999999887 66 8999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe------CC-------------CCCCCCceEEEccCC----------CE
Q 001367 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG----------TL 636 (1091)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~----------~~ 636 (1091)
|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence 99999999999999999999999999999998 44 003479999999998 79
Q ss_pred EEEEECCCeEEEEECCCC
Q 001367 637 LAVIANENRIKILETPES 654 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~ 654 (1091)
|++++.||.|++|++.++
T Consensus 379 l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEETTTEEEEEEEEC-
T ss_pred EEEecCCCcEEEEEcCCC
Confidence 999999999999998765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=329.16 Aligned_cols=322 Identities=15% Similarity=0.197 Sum_probs=281.1
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
..+.+.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++|+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 168 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR 168 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence 34678999987643 3556787 679999999999999999987765 77899999999998
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
+++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+ ++ .+++++.||.|++||+.+++.+..+.+|.
T Consensus 169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 6799999999999999999986554 678999999999996 45 79999999999999999999999999999
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
..|.++++ ++.++++++.||.|++||+++.+....+..+...+.++.| ++.++++++. ++.|++||+.++
T Consensus 240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~ 309 (445)
T 2ovr_B 240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG 309 (445)
T ss_dssp SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence 99999988 5578999999999999999999888899999999999999 8899999986 566999999999
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC-CCCCCceEEEccCCCEEEEEECCC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
+.+..+.+|. ..+.++.+ +++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||
T Consensus 310 ~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 382 (445)
T 2ovr_B 310 NCIHTLTGHQ---SLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG 382 (445)
T ss_dssp CEEEEECCCC---SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CEEEEEcCCc---ccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence 9999998877 78888777 46799999999999999999999999887632 34468888885 68999999999
Q ss_pred eEEEEECCCCCeeccc-----ccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccc----ccccccc
Q 001367 645 RIKILETPESNSVDAA-----GVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENK----SEVEKPL 715 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~----i~~w~~~ 715 (1091)
.|++||+.+++.+..+ ..+...|.+++| +|++..+++++.||+ +.+||+.
T Consensus 383 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------------s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA---------------------SNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE---------------------CSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred eEEEEECCCCceeeeeeccccCCCCceEEEEEe---------------------cCCEEEEEEcccCCCCccEEEEEECC
Confidence 9999999999888776 467788999998 777888889998887 8888876
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=325.37 Aligned_cols=299 Identities=15% Similarity=0.139 Sum_probs=247.5
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
....+.+.+|.+.|++++|+|++..+||+|+.||.|+|||+.+++...... ..+|...|.+++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~~ 125 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGMK 125 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEEE
Confidence 356778899999999999999993378999999999999999887664311 347999999999
Q ss_pred ECC-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++++.|+.|++||+ +++.+..+.
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~ 201 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEK 201 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEec
Confidence 999 789999999999999999986 33332222234558899999999999 8999999999999998 688899999
Q ss_pred CCCcceEEEeecccCCce-EEEEEecCCeEEEEecCC----CCceeeecCCCCcEEEEEEcC-CCCEEEEEecCCCCceE
Q 001367 483 GHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~ 556 (1091)
+|...|.+++|++ ++. ++++++.|+.|++||+++ ......+ .+...+.+++|+| ++++|++++. ++.
T Consensus 202 ~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~ 274 (383)
T 3ei3_B 202 LHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNE 274 (383)
T ss_dssp CSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSE
T ss_pred cCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCc
Confidence 9999999999965 455 899999999999999987 3333444 5788999999999 9999999976 677
Q ss_pred EEEEecCCceeeEEEeccccc--------------ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC
Q 001367 557 LVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1091)
|++||+.+++....+.++... ...+..++|+|++++ +++.|+.|++||+.+++.+..+..+...
T Consensus 275 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~ 352 (383)
T 3ei3_B 275 IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAA 352 (383)
T ss_dssp EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBC
T ss_pred EEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCC
Confidence 999999998887777654311 123445666777666 7779999999999999999999876544
Q ss_pred CCCceEEEccCCCEEEEEECCCeEEEEECCC
Q 001367 623 PENPRICFNKNGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
..+..++|+|++++|++++ |+.|++|++.+
T Consensus 353 ~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 353 GIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 5677789999999999997 89999999874
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-34 Score=330.16 Aligned_cols=304 Identities=17% Similarity=0.233 Sum_probs=265.4
Q ss_pred heeeecccCCCCc-EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 325 TVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 325 ~~~~~l~~h~~~V-~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
....++.+|.+.| .+++| +++ ++++|+.||+|++||+.+++.+.. +.+|...|.+++
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~ 169 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALK 169 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEE
Confidence 4567889999886 56665 555 679999999999999999987765 778999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC--CCCceEEEEeeCCCcEEEEeCCCCce----
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR---- 477 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~---- 477 (1091)
|+|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ +++ ++++++.|+.|++||+.++..
T Consensus 170 ~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 170 YAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC---
T ss_pred EcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccc
Confidence 99988 99999999999999999986544 6789999999999984 556 899999999999999987753
Q ss_pred -------------------eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEc
Q 001367 478 -------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS 538 (1091)
Q Consensus 478 -------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 538 (1091)
+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..+...+.+++|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 319 (464)
T 3v7d_B 244 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD 319 (464)
T ss_dssp ---CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred cccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc
Confidence 4567889999988843 55799999999999999999999999999999999999999
Q ss_pred CCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
|+++++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+ ++++++++.||.|++||+.++........
T Consensus 320 ~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 390 (464)
T 3v7d_B 320 HERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH 390 (464)
T ss_dssp TTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC
Confidence 99999999986 5669999999999999999887 899999997 58999999999999999999887766643
Q ss_pred CCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecc-cccccccceeeeec
Q 001367 619 GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN 673 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~ 673 (1091)
. ..+..++|+++++++++++ ||.|++||+.+++.+.. ...+...|.+++|+
T Consensus 391 ~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 391 T---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp T---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred C---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 2 2467889999999999998 89999999999988875 67788889999884
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=317.08 Aligned_cols=292 Identities=12% Similarity=0.109 Sum_probs=258.5
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
....|.+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVD 83 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEc
Confidence 3456899999999999999998 679999999999999999987765 77899999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC-----CcEEEEeCCCCc----
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS---- 476 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~---- 476 (1091)
|++++|++++.|+.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence 999999999999999999999987655 344 888999999999999 78899888 999999988664
Q ss_pred -------eeEEecCCCc--ceEEEeecccCCceEEEEEecCCeEEEEecCC-CCceeeecCCCCcEEEEEEcCCCCEEEE
Q 001367 477 -------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1091)
Q Consensus 477 -------~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 546 (1091)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+.+ ......+..+...+.+++|+|++++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence 3445556666 899999965 667999999999999999998 5667788888999999999999999999
Q ss_pred EecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCee
Q 001367 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQL 612 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg--------------~i~iwd~~~~~~ 612 (1091)
++. ++.|++||+.+++.+..+.. . ..+.+++|+|+++++++++.++ .+++||..+++.
T Consensus 236 ~~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 236 SSR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp EET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred ecC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 976 66799999999999888873 3 6899999999999999999888 899999999999
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
+..+..+.. .|.+++|+|++++|++++.||.|++|++..+.
T Consensus 308 ~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 308 IGRVQGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred hhheecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 999887654 79999999999999999999999999998653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=313.19 Aligned_cols=298 Identities=15% Similarity=0.229 Sum_probs=233.9
Q ss_pred cCCceeeEEEecccccccceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe-----eEEEEeCCCCCCCCceEEEccCCC
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFNKNGT 635 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1091)
.++.++..++++|. +.|++++|+|+ +++|++|+.|++|++||+.+.+ +...+..|. ..|.+++|+|+++
T Consensus 25 ~~~~~l~~tL~GH~---~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~--~~V~~~~~s~dg~ 99 (340)
T 4aow_A 25 TEQMTLRGTLKGHN---GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS--HFVSDVVISSDGQ 99 (340)
T ss_dssp -CEEEEEEEECCCS---SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS--SCEEEEEECTTSS
T ss_pred CCceEEEEEECCcc---CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC--CCEEEEEECCCCC
Confidence 34445667788888 99999999998 5799999999999999987643 345555554 4799999999999
Q ss_pred EEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 636 LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|++++.|+.|++|+...........
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~~~~~------------------------------------------------------ 125 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTTRRFV------------------------------------------------------ 125 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE------------------------------------------------------
T ss_pred EEEEEcccccceEEeecccceeeeec------------------------------------------------------
Confidence 99999999999999876542221110
Q ss_pred ccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecC
Q 001367 716 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 795 (1091)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1091)
T Consensus 126 -------------------------------------------------------------------------------- 125 (340)
T 4aow_A 126 -------------------------------------------------------------------------------- 125 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCcee-EEEecCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEec
Q 001367 796 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHD-NNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 796 ~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~-~~~la~g~~dg~i~iwd~ 872 (1091)
.+...+....+++++.++++++ |+.+++||...... .....+|...+..++|+++. ..++++++.|+.|++||+
T Consensus 126 ---~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~ 202 (340)
T 4aow_A 126 ---GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202 (340)
T ss_dssp ---CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred ---CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEEC
Confidence 0222334444555555555555 56666666554433 33455688899999998842 357889999999999999
Q ss_pred cCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 873 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 873 ~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
.+++.+..+.+|.+.|++++|+|++++|++++.|+.|++||+.+.+. +.....+. .+.+++|+|++.++++
T Consensus 203 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-----~~~~~~~~----~v~~~~~~~~~~~~~~ 273 (340)
T 4aow_A 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-----LYTLDGGD----IINALCFSPNRYWLCA 273 (340)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----EEEEECSS----CEEEEEECSSSSEEEE
T ss_pred CCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce-----eeeecCCc----eEEeeecCCCCceeec
Confidence 99999999999999999999999999999999999999999998653 33333333 5899999999999988
Q ss_pred EecCeEEEEEcCCcceeeeee--------cCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 953 VHETHLAIYEAEELTCLKQWF--------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 953 ~~d~~i~vwd~~~~~~~~~~~--------~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
+.|+.|++||++++..+..+. .+|...|++++|+|||++|++|+.||.|+|||+.+|.
T Consensus 274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999887665432 3578999999999999999999999999999999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=344.88 Aligned_cols=342 Identities=10% Similarity=0.059 Sum_probs=248.8
Q ss_pred eeeecccCCCCcEEEEEcCCC---------ceEEEE-------------------EcCCCcEEEEEcCCCCceeeeceeE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFKV 377 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg---------~~llas-------------------g~~dg~i~iWd~~~~~~~~~~~~~~ 377 (1091)
+..++. +.+.|++|+|+|++ + +||+ |+.|++|+|||+.+++.....
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~---- 199 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK---- 199 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE----
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE----
Confidence 333444 45688888888886 4 4455 557889999999887643210
Q ss_pred EeccccccceeeeeecCCCccEEEEEECCC------CCEEEEEECCCEEEEEEeeCCccc--------ceeEEEeccccC
Q 001367 378 WDIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVGN 443 (1091)
Q Consensus 378 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~~~~h~~~ 443 (1091)
...+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.++... .....+.+|...
T Consensus 200 -----------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 200 -----------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp -----------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred -----------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 1125568899999999997 579999999999999999876432 123367899999
Q ss_pred eeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-eeEEecCCCcceEEEeecccCCc-eEEEEEecCCeEEEEecCCCCc
Q 001367 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGA 521 (1091)
Q Consensus 444 v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~ 521 (1091)
|++++|++++ .|++|+.||+|++||+.++. +...+.+|...|.++++...+++ .+|++++.|++|++||+++.+.
T Consensus 269 v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 269 ITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 9999999864 69999999999999999874 45678899999999954335566 7999999999999999988766
Q ss_pred eeeecCCC--CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC
Q 001367 522 RVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1091)
Q Consensus 522 ~~~~~~~~--~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d 599 (1091)
...+..+. ..+.+++|+|+++.+++++. ++.|++||++++..+..+.+|. ..|.+++|+|++++|++|+.|
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEETT
T ss_pred ccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEECC
Confidence 55554433 34788999999999988865 6679999999998888888877 899999999999999999999
Q ss_pred CeEEEEECCCCeeEEEEeCC---CCCCCCceEEEccCCCEEEEEECCCeEEEEECC-CCCeecccccccccceeeeeccc
Q 001367 600 HVIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
|+|++||+..+ .+...... .....+..++|+|+++.+. ... .+.+|... ++..+..+.+|...|.+++|+|+
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~ 494 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNET 494 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCS
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCC
Confidence 99999998654 22111100 0111356889999998553 222 23344332 45677788899999999999543
Q ss_pred cccccccccCCcccCCCCCCCCCcccccccccccccccccc
Q 001367 676 STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 676 ~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
+ +.+..+++|+.+|.|+||++..
T Consensus 495 ~------------------~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 495 S------------------AGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp T------------------TTTTEEEEECTTSEEEEEECSC
T ss_pred C------------------CccHHHHhhccCceEEEEEccc
Confidence 1 2255899999999999999763
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=309.67 Aligned_cols=294 Identities=20% Similarity=0.266 Sum_probs=255.6
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.+..+++.+|.+.|++++| |+++ ++++|+.||.|++||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 4677889999999999999 9998 579999999999999988876653 557899999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1091)
|+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999876554555578899999999999 466 799999999999999 7788888999
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC-CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999999763 456999999999999999 3445555555 788999999999998 777765 667999999
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
.+++.+..+.+|. ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .+.+++|+|+++ +++++.
T Consensus 213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~ 285 (313)
T 3odt_A 213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSS 285 (313)
T ss_dssp TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEET
T ss_pred CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeC
Confidence 9999999998877 899999999998 689999999999999999999999987754 689999999998 667999
Q ss_pred CCeEEEEECCCCCeecc
Q 001367 643 ENRIKILETPESNSVDA 659 (1091)
Q Consensus 643 dg~i~iwd~~~~~~~~~ 659 (1091)
||.|++|++.+++....
T Consensus 286 dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 286 DNLVRIFSQEKSRWASE 302 (313)
T ss_dssp TSCEEEEESCGGGCCC-
T ss_pred CCcEEEEeCCCCceeeh
Confidence 99999999987755443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=320.05 Aligned_cols=300 Identities=12% Similarity=0.209 Sum_probs=248.9
Q ss_pred chheeeecccCCCCcEEEEEcCCCceEEEEEcC---CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccE
Q 001367 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1091)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~---dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1091)
|.-..+.+.+|.+.|++++|+|+++.++++|+. ||.|+|||+.+++..... ..+|...|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v 68 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI 68 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence 344556678999999999999999878889987 999999999998765431 22589999
Q ss_pred EEEEECCC---CCEEEEEECCCEEEEEEeeCCc-ccceeEEEeccccCeeEEE------EcCCCCceEEEEeeCCCcEEE
Q 001367 400 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 400 ~~l~~spd---g~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~------~s~d~~~~~l~s~~~d~~i~i 469 (1091)
.+++|+|+ +++|++|+.|+.|++||+.+++ .+. .+.+|...|.+++ |+|+++ +|++++.|+.|++
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~v 143 (357)
T 3i2n_A 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKV 143 (357)
T ss_dssp EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEE
T ss_pred EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEE
Confidence 99999998 7999999999999999999886 333 6789999999995 578898 8999999999999
Q ss_pred EeCCCCc-eeEEecCCCc----ceEEEeec--ccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC---
Q 001367 470 WDAVTGS-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--- 539 (1091)
Q Consensus 470 wd~~~~~-~~~~~~~~~~----~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--- 539 (1091)
||+.+++ .+..+..|.+ .+.++++. .++++.++++++.||.|++||+++...... ..+...+.+++|+|
T Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSS
T ss_pred EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCC
Confidence 9999987 7788876655 78888742 245778999999999999999998776443 55677899999999
Q ss_pred CCCEEEEEecCCCCceEEEEEecCCceeeEEEe-----cccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV--- 610 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~--- 610 (1091)
++.++++++. ++.|++||+.+++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+.++
T Consensus 223 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 223 SMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp SCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 9999999876 6679999999887666554 555 8999999999998 7999999999999998754
Q ss_pred ----------------eeEEEEeCCCCCCCCceEEEccCCCEEE-EEECCCeEEEEECCCCC
Q 001367 611 ----------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 655 (1091)
Q Consensus 611 ----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~ 655 (1091)
+.+..+..+. ..|.+++|+|++++|+ +++.||.|++|++.+..
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNVTLST--QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEEECCS--SCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccCCCCccccccccceeeccccCC--CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 3455566554 4799999999999998 79999999999988653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=318.11 Aligned_cols=317 Identities=21% Similarity=0.309 Sum_probs=269.1
Q ss_pred EEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEe
Q 001367 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1091)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1091)
.+.+|.+.|.. +++++|+ ++++|+.||.|++||+.+++.+..+.+|...|.+++++ +.++++++.||.|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEEE
Confidence 57789887533 3455677 89999999999999999999999999999999999985 35899999999999999
Q ss_pred cCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE
Q 001367 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 595 (1091)
+.+++....+..|...|.++.++ ++.+++++. ++.|++||+.+++.+..+.+|. ..+.+++| +++++++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~ 254 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHV---AAVRCVQY--DGRRVVS 254 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCS---SCEEEEEE--CSSCEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCc---ccEEEEEE--CCCEEEE
Confidence 99999888999999999999985 567888876 6779999999999999998877 89999998 6789999
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccc
Q 001367 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
++.||.|++||+.+++.+..+..+.. .+.++.| ++.++++++.||.|++||+.+++.+..+.+
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------------- 317 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG------------- 317 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC-------------
T ss_pred EcCCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC-------------
Confidence 99999999999999999998876644 6888888 789999999999999999876543322211
Q ss_pred cccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCc
Q 001367 676 STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 755 (1091)
Q Consensus 676 ~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 755 (1091)
T Consensus 318 -------------------------------------------------------------------------------- 317 (445)
T 2ovr_B 318 -------------------------------------------------------------------------------- 317 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCcee
Q 001367 756 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT 834 (1091)
Q Consensus 756 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~ 834 (1091)
|...+.++++ +++++++++ ||.|++||+.+++.
T Consensus 318 --------------------------------------------~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~ 351 (445)
T 2ovr_B 318 --------------------------------------------HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQC 351 (445)
T ss_dssp --------------------------------------------CCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE
T ss_pred --------------------------------------------CcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcE
Confidence 2333444443 345667666 67888888888888
Q ss_pred EEEecC---CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee-----ccccCCeEEEEECCCCCEEEEEeCC
Q 001367 835 ILTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDALNILVSSGGD 906 (1091)
Q Consensus 835 ~~~~~~---~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l-----~~h~~~V~~l~~spdg~~las~s~D 906 (1091)
+..+.. |...|++++|++ ++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++.+||+++.|
T Consensus 352 ~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~d 428 (445)
T 2ovr_B 352 LQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428 (445)
T ss_dssp EEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred EEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccC
Confidence 888775 778899999964 69999999999999999999988877 5788999999999999999999999
Q ss_pred Cc----EEEEEcCC
Q 001367 907 AQ----IFVWDVDG 916 (1091)
Q Consensus 907 g~----i~vwd~~~ 916 (1091)
|+ |.+||++.
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 98 99999986
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=336.19 Aligned_cols=350 Identities=10% Similarity=0.032 Sum_probs=245.1
Q ss_pred CCccEEEEEECCCC---------CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC
Q 001367 395 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 395 h~~~V~~l~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
+.+.|.+|+|+|++ ++||+|+.++. + -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence 56899999999987 89999986642 0 01368888 799999999
Q ss_pred cEEEEeCCCCcee----EEecCCCcceEEEeeccc----CCceEEEEEecCCeEEEEecCCCCc-----------eeeec
Q 001367 466 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 526 (1091)
Q Consensus 466 ~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~ 526 (1091)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887653 446678899999999886 3467999999999999999976542 23567
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce-eeEEEecccccccceEEE--EEcCCC-CEEEEEeCCCeE
Q 001367 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 602 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v--~~~~~~-~~l~~~s~dg~i 602 (1091)
.+...|.+++|++++ .|++++. ++.|++||+.++. +...+.+|. ..|.++ +|+|++ .+|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999865 7888876 7789999999764 445677777 899999 578887 889999999999
Q ss_pred EEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccccccc
Q 001367 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1091)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (1091)
++||+++++.+..+..+.....|.+++|+|+++.+++++.|++|++||+.++..+..+.+|...|++++|
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~---------- 405 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGV---------- 405 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEEC----------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEe----------
Confidence 9999998877666654433224789999999999999999999999999999888888899999999988
Q ss_pred ccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeec
Q 001367 683 IANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 683 ~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
+|+++.+++|+.|++|++|+.... . +. . +... . ..
T Consensus 406 -----------Sp~g~~l~Sgs~Dgtv~lwd~~~~----~--~~--~--~~~~---------~------~~--------- 440 (524)
T 2j04_B 406 -----------SRLHPMVLAGSADGSLIITNAARR----L--LH--G--IKNS---------S------AT--------- 440 (524)
T ss_dssp -----------CSSCCBCEEEETTTEEECCBSCSS----T--TT--C--C------------------------------
T ss_pred -----------CCCCCeEEEEECCCEEEEEechHh----h--cc--c--cccC---------c------cc---------
Confidence 677777888888888888875311 0 00 0 0000 0 00
Q ss_pred CCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEcc-CceeEEEecCC
Q 001367 763 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMPP 841 (1091)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~~ 841 (1091)
.+...+.+++|+|+++.+.. ++.+.+|+.. ++.++.++.+|
T Consensus 441 ------------------------------------~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~gh 482 (524)
T 2j04_B 441 ------------------------------------QKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDAH 482 (524)
T ss_dssp ------------------------------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------C
T ss_pred ------------------------------------eeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecCC
Confidence 01123445667777764422 2222333332 46677788899
Q ss_pred CCCeEEEEEcCCC---CcEEEEEeCCCeEEEEeccC
Q 001367 842 SPTATSLAFNPHD---NNVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 842 ~~~i~~l~~s~~~---~~~la~g~~dg~i~iwd~~~ 874 (1091)
...|.+++|+| + +.++|+|+.||.|+||++..
T Consensus 483 ~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 483 GINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 99999999999 6 45999999999999999873
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=320.73 Aligned_cols=347 Identities=16% Similarity=0.213 Sum_probs=262.8
Q ss_pred eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeE
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1091)
....+.+|. ...+.++.+ +++++++|+.||+|++||+.+++.+..+..|.. .|.+++|+|++ ++++++.||+|
T Consensus 113 ~~~~l~~h~--~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~--~V~~l~~~~~~-~l~s~s~dg~i 185 (464)
T 3v7d_B 113 QRTTLRGHM--TSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG--GVWALKYAHGG-ILVSGSTDRTV 185 (464)
T ss_dssp EEEEEECCS--SSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECSTT-EEEEEETTSCE
T ss_pred ceEEEcCCC--CCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc--CEEEEEEcCCC-EEEEEeCCCCE
Confidence 455677776 233566666 567999999999999999999999999986654 79999999988 99999999999
Q ss_pred EEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceee
Q 001367 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 726 (1091)
Q Consensus 647 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 726 (1091)
++||+.+++.+..+.+|...|.++++.+ .++++.+++++.|+++++|++.......
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~-------------------~~~~~~l~s~s~d~~i~vwd~~~~~~~~----- 241 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVE-------------------YKNIKYIVTGSRDNTLHVWKLPKESSVP----- 241 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEE-------------------SSSCEEEEEEETTSCEEEEECCCCCCC------
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEec-------------------CCCCCEEEEEcCCCcEEEeeCCCCcccc-----
Confidence 9999999888777777777776666642 2445555556666666666544211100
Q ss_pred cCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeE
Q 001367 727 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 806 (1091)
Q Consensus 727 ~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 806 (1091)
......+.. .+.. .+.... .....+ .+|...+.+
T Consensus 242 -----------~~~~~~~~~-~~~~-------------------------------~~~~~~-~~~~~~--~~~~~~v~~ 275 (464)
T 3v7d_B 242 -----------DHGEEHDYP-LVFH-------------------------------TPEENP-YFVGVL--RGHMASVRT 275 (464)
T ss_dssp ----------------CCSS-EEES-------------------------------CGGGCT-TEEEEE--CCCSSCEEE
T ss_pred -----------cccccCCcc-eEee-------------------------------ccCCCe-EEEEEc--cCccceEEE
Confidence 000000000 0000 000000 011111 146777776
Q ss_pred EEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecccc
Q 001367 807 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 885 (1091)
Q Consensus 807 l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~ 885 (1091)
+ +++++++++++ |+.|++||+.+++.+..+.+|...|.+++|+| +++++++|+.||.|++||+.+++++..+.+|.
T Consensus 276 ~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~ 352 (464)
T 3v7d_B 276 V--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHT 352 (464)
T ss_dssp E--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred E--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC
Confidence 6 68899999998 79999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCC
Q 001367 886 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 965 (1091)
Q Consensus 886 ~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~ 965 (1091)
..|.+++|+ +++|++++.||.|++||+.++.... ... +. ..+..++|++++++|+++.|+.|++||+.+
T Consensus 353 ~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~----~~~--~~---~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF----SYH--HT---NLSAITTFYVSDNILVSGSENQFNIYNLRS 421 (464)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE----EEE--CT---TCCCEEEEEECSSEEEEEETTEEEEEETTT
T ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee----eec--CC---CCccEEEEEeCCCEEEEecCCeEEEEECCC
Confidence 999999997 5899999999999999999865321 111 11 257789999999999998899999999999
Q ss_pred cceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 966 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 966 ~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
++.+.....+|...|.+++|+ ++.++++++.||.+.+|-
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 999988778889999999997 445556666677665553
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=325.27 Aligned_cols=238 Identities=11% Similarity=0.177 Sum_probs=192.4
Q ss_pred chheeeec-ccCCCCcEEEEEcC-CCceEEEEEcCCCcEEEEEcCC---CCceeeeceeEEeccccccceeeeeecCCCc
Q 001367 323 PKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1091)
Q Consensus 323 p~~~~~~l-~~h~~~V~~v~fsp-dg~~llasg~~dg~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1091)
...++.++ .+|.+.|++++|+| +++ +||+|+.||+|+|||+.+ +..... ....+|..
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~~ 112 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCSS 112 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECSS
T ss_pred cceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCCC
Confidence 35667777 89999999999999 998 679999999999999977 432210 00224999
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEee---CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~---~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
.|.+++|+|++++|++|+.|++|++||+. +++... .+.+| .+..+.|+|++
T Consensus 113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~--------------------- 166 (437)
T 3gre_A 113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG--------------------- 166 (437)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS---------------------
T ss_pred CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc---------------------
Confidence 99999999999999999999999999995 544332 34444 57777777643
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC--CCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
+...+.++.+...+++.++++++.||.|++||+++.+....+.. +...|.+++|+|++++|++++.
T Consensus 167 ---------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--- 234 (437)
T 3gre_A 167 ---------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT--- 234 (437)
T ss_dssp ---------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET---
T ss_pred ---------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC---
Confidence 22334444444566788999999999999999999988888877 7789999999999999999986
Q ss_pred CceEEEEEecCCceeeEEEe-cccccccceEEEEEc----CCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001367 553 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD----TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~----~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1091)
++.|++||+++++.+..+. .+. ..|.+++|+ |++.++++++.||.|++||+.+++.+..+..+.
T Consensus 235 -dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 303 (437)
T 3gre_A 235 -RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSD 303 (437)
T ss_dssp -TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSS
T ss_pred -CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCC
Confidence 5679999999999988886 444 689999665 457799999999999999999999998887654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=318.77 Aligned_cols=295 Identities=16% Similarity=0.215 Sum_probs=246.2
Q ss_pred eecccCCCCcEEEEEcCC---CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 328 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspd---g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..+.+|.++|++++|+|+ +..++++++.++.|+|||+.+++.+... +......|...|.+++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL--------------QSYVDADADENFYTCAW 77 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEE--------------EEEECSCTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEee--------------eeccccCCCCcEEEEEe
Confidence 455699999999999984 4435566666679999999988776431 11112347889999999
Q ss_pred CCC----CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC-CCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 405 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 405 spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
+|+ +++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+| +++ +|++++.||.|++||+.+++.+.
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence 999 6799999999999999999886554 6779999999999999 788 89999999999999999999998
Q ss_pred Ee---cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec----------------------------CC
Q 001367 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD----------------------------AP 528 (1091)
Q Consensus 480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------------~~ 528 (1091)
.+ .+|...|.+++|++ ++.+|++++.||.|++||+++.+....+. .+
T Consensus 153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 88 78999999999965 66799999999999999998765433222 37
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee--------------eEEEecccccccceEEEEEcCC--CCE
Q 001367 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ 592 (1091)
Q Consensus 529 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~v~~~~~--~~~ 592 (1091)
...|.+++|+ ++++++++. ++.|++||+.++.. +..+..|. ..|.+++|+|+ +++
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM 301 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence 7889999998 778888875 67799999987643 66666666 78999999999 999
Q ss_pred EEEEeCCCeEEEEECCCCe----eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 593 ILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
|++++.||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999875 34466666445679999999999999999999999999975
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=328.92 Aligned_cols=304 Identities=17% Similarity=0.194 Sum_probs=238.7
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
...+...+|...|+||+|+|.+..+||+|+.||+|+|||+.+++...... +.+|.+.|++|+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f 172 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKF 172 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEE
Confidence 34556778999999999999654588999999999999998887543211 5689999999999
Q ss_pred CC-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC
Q 001367 405 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 405 sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1091)
+| ++.+|++|+.|++|++||++++.. ........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+
T Consensus 173 ~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~ 248 (435)
T 4e54_B 173 NPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRM 248 (435)
T ss_dssp CSSCTTEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBC
T ss_pred eCCCCCEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEec
Confidence 98 789999999999999999987532 22111223445688999999999 89999999999999975 567788999
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee---eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
|...|.+++|++.. ..++++++.|+.|++||++...... ....|...|.+++|+|+|++|++++. ++.|++|
T Consensus 249 h~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iw 323 (435)
T 4e54_B 249 HKKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVY 323 (435)
T ss_dssp CSSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEE
T ss_pred ccceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEE
Confidence 99999999997653 2488999999999999998766543 33567889999999999999999986 6679999
Q ss_pred ecCCceeeEEEeccccc---ccceEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeEEEEeCCCCCCCC
Q 001367 561 NESEGAIKRTYQGLQLQ---HNSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~---~~~v~~v~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1091)
|+.++.....+..|... ...+..+.|+|++..+++++ .++.|++||..+++.+..+..+.. ..|
T Consensus 324 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~-~~v 402 (435)
T 4e54_B 324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPES-SGI 402 (435)
T ss_dssp ESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSC-CCC
T ss_pred ECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCC-CcE
Confidence 99999887777665411 11233456777777766654 346799999999999888754332 357
Q ss_pred ceE-EEccCCCEEEEEECCCeEEEEECCCCCe
Q 001367 626 PRI-CFNKNGTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 626 ~~v-~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
.++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus 403 ~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 403 SSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 776 6999999999876 78999999987754
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=314.44 Aligned_cols=203 Identities=12% Similarity=0.116 Sum_probs=172.9
Q ss_pred CCCCeeEEEecCCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc
Q 001367 800 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 876 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~ 876 (1091)
+...+.+++|||||+++++++ |++|+|||+.+++++..+. |...|.+++|+| ++++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556789999999999988765 6899999999999998886 778899999999 89999999855 56677777776
Q ss_pred ee--eeeccccCCeEEEEECCCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEE
Q 001367 877 VI--SKLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 950 (1091)
Q Consensus 877 ~~--~~l~~h~~~V~~l~~spdg~~las~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~l 950 (1091)
.+ ....+|...|.+++|+||++++++++.|+ .+++|++....... .......+|.. .|.+++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSV-LRSKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEE-EEEEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecc-eeeeeecCCCC---CeEeEEECCCCCce
Confidence 54 34567889999999999999999999887 68899988755332 12233445544 79999999999999
Q ss_pred EE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 951 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 951 a~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
|+ +.|++|+|||+.+++++..+..+|...|++++|||||++||+++.|++|+||+++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 578999999999999999888899999999999999999999999999999999754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=312.00 Aligned_cols=291 Identities=12% Similarity=0.066 Sum_probs=245.9
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC--ceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+..|.++|++++|+|+|+ ++|+|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence 456889999999999998 67999999999999999886 3332 6689999999999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce---e-EEecC
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---T-YSFEG 483 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~-~~~~~ 483 (1091)
+++|++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++ ++++++.|+.|++||+.++.. . .....
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 9999999999999999999876433 224567999999999999999 899999999999999998763 2 33367
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecC------------------CCCceeeecCCCCcEEEEEEcCCCCEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
|...|.+++|++ ++.++++++.||.|++||+. .......+..+...+.+++|+|++++|+
T Consensus 141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 899999999965 66799999999999999954 4566667778888999999999999999
Q ss_pred EEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeE----------
Q 001367 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL---------- 613 (1091)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~---------- 613 (1091)
+++. ++.|++||+.+++.+..+..+. ..|.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9986 6679999999999999998877 899999999999877777 999999999987 5311
Q ss_pred ----------------------------EEEeCCCCCCCCceEEEc-cCC---CEEEEEECCCeEEEEECCCC
Q 001367 614 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 654 (1091)
Q Consensus 614 ----------------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iwd~~~~ 654 (1091)
..+. .++...|.+++|. ++| ++|++++.||.|++|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 1344578999866 566 99999999999999998754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=307.11 Aligned_cols=289 Identities=12% Similarity=0.144 Sum_probs=258.9
Q ss_pred eeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 389 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 389 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
...+.+|...|++++|+|++++||+++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~ 99 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIK 99 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEE
Confidence 34488999999999999999999999999999999999886554 6789999999999999999 899999999999
Q ss_pred EEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC-----CeEEEEecCCCCc-----------eeeecCCCC--
Q 001367 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL-- 530 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~-- 530 (1091)
+||+.+++.+..+. +...|.+++|++ ++.++++++.+ |.|++||+..... ...+..+..
T Consensus 100 iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD 176 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred EEECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence 99999999999887 889999999954 67899999998 9999999987643 223334444
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
.+.+++|+|+++++++++. ++.|++||+.+ ++.+..+..+. ..|.+++|+|++++|++++.|+.|++||+.+
T Consensus 177 ~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp CEEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ceeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence 8999999999999999876 67799999998 78888888877 8999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC--------------eEEEEECCCCCeecccccccccceeeeeccc
Q 001367 610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
++.+..+... ..+..++|+|+++++++++.++ .+++|+..+++.+..+.+|...|.+++|
T Consensus 250 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--- 323 (369)
T 3zwl_B 250 LQVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI--- 323 (369)
T ss_dssp CCEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE---
T ss_pred CceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE---
Confidence 9999888743 3589999999999999999988 8999999999999999999999999999
Q ss_pred cccccccccCCcccCCCCCCCCCcccccccccccccccccc
Q 001367 676 STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 676 ~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
+|+++.+++++.|+.|++|++..
T Consensus 324 ------------------s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 324 ------------------SPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ------------------CTTSSEEEEEETTSEEEEEEECH
T ss_pred ------------------CCCCCEEEEEcCCCeEEEEECcc
Confidence 78899999999999999999864
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=321.19 Aligned_cols=302 Identities=12% Similarity=0.115 Sum_probs=229.6
Q ss_pred EEEecccccccceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc-CCCEEEEEECCCeE
Q 001367 569 RTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI 646 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i 646 (1091)
....+|. ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+|
T Consensus 113 ~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 113 QKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp CEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred ccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3444444 78999999994 5689999999999999999887766666555566899999998 78899999999999
Q ss_pred EEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceee
Q 001367 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 726 (1091)
Q Consensus 647 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 726 (1091)
++||+.++.... +
T Consensus 190 ~iwd~~~~~~~~-~------------------------------------------------------------------ 202 (435)
T 4e54_B 190 RLQDFKGNILRV-F------------------------------------------------------------------ 202 (435)
T ss_dssp EEEETTSCEEEE-E------------------------------------------------------------------
T ss_pred EEeeccCCceeE-E------------------------------------------------------------------
Confidence 999976331100 0
Q ss_pred cCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeE
Q 001367 727 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 806 (1091)
Q Consensus 727 ~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 806 (1091)
. .. ..+...+.+
T Consensus 203 --------------~---------~~---------------------------------------------~~~~~~~~~ 214 (435)
T 4e54_B 203 --------------A---------SS---------------------------------------------DTINIWFCS 214 (435)
T ss_dssp --------------E---------CC---------------------------------------------SSCSCCCCC
T ss_pred --------------e---------cc---------------------------------------------CCCCccEEE
Confidence 0 00 013345677
Q ss_pred EEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceee---eec
Q 001367 807 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS---KLE 882 (1091)
Q Consensus 807 l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~---~l~ 882 (1091)
++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.|++||+.+++... ...
T Consensus 215 ~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 215 LDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp EEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred EEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 88999999999987 7999999986 466778889999999999999555689999999999999998876543 346
Q ss_pred cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE---------
Q 001367 883 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--------- 953 (1091)
Q Consensus 883 ~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--------- 953 (1091)
+|...|++++|+|||++|++++.||.|++||+.++............ +.. ...+....|+|++.+++++
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 371 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR-HFQ-HLTPIKAAWHPRYNLIVVGRYPDPNFKS 371 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC-CCS-SSCCCBCEECSSSSCEEEECCCCTTSCC
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc-ccc-cceeEEEEEcCCCCEEEEEEcCCCCeEE
Confidence 79999999999999999999999999999999987643322111110 000 0123345666666666553
Q ss_pred ----ecCeEEEEEcCCcceeeeeecCCccCEEEE-EEeeCCCEEEEEEcCCcEEEEeCCCCceE
Q 001367 954 ----HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1012 (1091)
Q Consensus 954 ----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v-~fs~dg~~l~t~~~dg~v~iwd~~~~~~~ 1012 (1091)
.++.|++||..+++.+..+..+|...|.++ +|+|||++|++|+ |++|+||++.+|+..
T Consensus 372 ~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 372 CTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp SSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999998888898899887 6999999999875 889999999988653
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=311.76 Aligned_cols=307 Identities=16% Similarity=0.168 Sum_probs=240.7
Q ss_pred EEecCCceeeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc-CCCE
Q 001367 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL 636 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 636 (1091)
+|+.........+.+|. ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus 57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 45556667777888777 899999999999 899999999999999999998888887545556899999999 7899
Q ss_pred EEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccc
Q 001367 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
|++++.|+.|++||+.+. ....+..
T Consensus 134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------ 158 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------ 158 (383)
T ss_dssp EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence 999999999999997632 1100000
Q ss_pred cCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCC
Q 001367 717 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 796 (1091)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1091)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCc-EEEEEeCCCeEEEEeccC
Q 001367 797 DSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 797 ~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g~~dg~i~iwd~~~ 874 (1091)
..++...|.+++|+|+++++++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+.+
T Consensus 159 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 159 TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGG
T ss_pred cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCC
Confidence 001456677888888888888887 688888888 5777888888999999999999 676 999999999999999998
Q ss_pred ----cceeeeeccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeec--cCCCcC-------CCCCceE
Q 001367 875 ----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSETH 940 (1091)
Q Consensus 875 ----~~~~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~--~~~~~~-------~~~~i~~ 940 (1091)
+.++..+ +|.+.|++++|+| ++++|++++.|+.|++||+.+++......... ...+.. ....+..
T Consensus 237 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 315 (383)
T 3ei3_B 237 IKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV 315 (383)
T ss_dssp CCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred CCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceE
Confidence 5566666 6999999999999 99999999999999999999866432211110 011111 0023444
Q ss_pred EEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecC-CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 941 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 941 l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
++|+|||++ ..+.|+.|++||+.+++.+..+... |...+..++|+|||++|++++ ||.|++||+.+
T Consensus 316 ~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 316 AGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 666666666 3357899999999999998886533 467788889999999999997 99999999874
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=310.15 Aligned_cols=298 Identities=11% Similarity=0.127 Sum_probs=230.4
Q ss_pred CcEEEEEcCCCceEEEEEcCC-------CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 336 SPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~d-------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
+|++++|+|||+ +||+|+.| +.|++|++..+.......+. ......+.+|...|.+++++ +
T Consensus 16 PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~--~ 83 (365)
T 4h5i_A 16 PAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS--K 83 (365)
T ss_dssp CEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE--T
T ss_pred CEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC--C
Confidence 899999999998 77888653 35999999876544321111 11222377899999888765 5
Q ss_pred CEEEEE-----------ECCCEEEEEEeeCCcccce-eEE-----EeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 409 SLLGVA-----------YSKHIVQLYAYHGGSDARQ-QLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 409 ~~las~-----------~~d~~i~iwd~~~~~~~~~-~~~-----~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+++| +.|+++++|++.++..... ... ...+...+.+++|||||+.+.+++++.|++|+|||
T Consensus 84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEE
T ss_pred CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeE
Confidence 566665 3567899999987643221 111 12344568999999999965556777899999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee--eecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
+.+++++..+. |...|.+++|+ +++.++++++.++ +++|+..++.... ....+...+.+++|+|+++++++++.
T Consensus 164 ~~~~~~~~~~~-~~~~V~~v~fs--pdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 164 PSDLTEKFEIE-TRGEVKDLHFS--TDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp TTTTEEEEEEE-CSSCCCEEEEC--TTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCcEEEEeC-CCCceEEEEEc--cCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999998886 77889999995 5778999988554 5666666665544 34456778999999999999999988
Q ss_pred CCCCceEEEEEecCCcee----eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE-eCCCCCCC
Q 001367 550 SKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPE 624 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~ 624 (1091)
++.....+++|++..... ...+.+|. ..|.+++|+|++++|++|+.|++|+|||+.+++++..+ ..|.. .
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~--~ 314 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF--A 314 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS--C
T ss_pred CCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC--C
Confidence 666566789999877653 23455555 88999999999999999999999999999999998876 45544 7
Q ss_pred CceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 625 NPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
|++++|+|||++|++++.|++|+||+++..
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=314.92 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=240.2
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeC-----------CCCC
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGL 622 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~ 622 (1091)
..+++|+...++....+.+|. ..|.+++|+| +++++++++.||.|++||+.+++....+.. ..+.
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 347788888888888888877 9999999999 999999999999999999998765544321 1234
Q ss_pred CCCceEEEcc-CCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccc
Q 001367 623 PENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEI 701 (1091)
Q Consensus 623 ~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~ 701 (1091)
..|.+++|+| ++.++++++.||.|++||+.++.....+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------------------- 139 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------------------------------------- 139 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------------------------------------
Confidence 4789999999 77889999999999999887553222111
Q ss_pred ccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCcc
Q 001367 702 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 781 (1091)
Q Consensus 702 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 781 (1091)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEecC---CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCc-
Q 001367 782 YQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN- 856 (1091)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~- 856 (1091)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+..|...|++++|+| ++.
T Consensus 140 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 200 (408)
T 4a11_B 140 ------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDY 200 (408)
T ss_dssp ------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTT
T ss_pred ------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCc
Confidence 122333444444 445777776 68899999999998999999999999999999 565
Q ss_pred EEEEEeCCCeEEEEeccCcc-eeeee---------------ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee
Q 001367 857 VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 920 (1091)
Q Consensus 857 ~la~g~~dg~i~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~ 920 (1091)
++++|+.||.|++||+.++. .+..+ .+|.+.|++++|+|++++|++++.||.|++||+.+++..
T Consensus 201 ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280 (408)
T ss_dssp EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc
Confidence 69999999999999998765 33333 578999999999999999999999999999999986632
Q ss_pred eeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCc
Q 001367 921 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 1000 (1091)
Q Consensus 921 ~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~ 1000 (1091)
............. ...........+.+++++.++.|++||+.+++.+.. +.+|...|++++|+||+++|++++.||.
T Consensus 281 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 281 LVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp CCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred eeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence 2111111111111 123334445556666678999999999999998887 4679999999999999999999999999
Q ss_pred EEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 1001 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1001 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
|++|++.+++.+....... ....+.|.....+.+.+.++.+++|+.+
T Consensus 358 i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 358 ILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EEEEEECC----------------------------------------------------
T ss_pred EEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence 9999999998764433111 0112333234567788899999999874
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=310.97 Aligned_cols=298 Identities=16% Similarity=0.230 Sum_probs=244.1
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
..+|.+.+.+.++++++..+ ++++.||.|++||+.+++..... ...|...|.+++|+|+++
T Consensus 87 ~~~~~~~~~~~~~~~s~~~l-~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLNV-VAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDGS 147 (401)
T ss_dssp CTTCCCCTTCBCEEECTTSE-EEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTSS
T ss_pred CCCCcCCceEEEEeecCCCE-EEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCCC
Confidence 34777665554444334434 66778999999999999876531 223889999999999999
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC-CCceeEEecCCCcce
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAPV 488 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v 488 (1091)
+|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ ++++++.||.|++||+. .+..+..+.+|...|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 99999999999999999886554 677999999999994 45 79999999999999998 567788899999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
.+++|++ ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+
T Consensus 221 ~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 221 CGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEE
T ss_pred eEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEE
Confidence 9999965 6789999999999999999998888888899999999999998765555432 123778999999999998
Q ss_pred EEEecccccccceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeE
Q 001367 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1091)
..+... ..+.+++|+|+++.+++++ .||.|++||+.+++.........+...|.+++|+|++++|++++.||.|
T Consensus 298 ~~~~~~----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 298 NTVDAG----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp EEEECS----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred EEEeCC----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 888643 5899999999999999954 8999999999997766654433444579999999999999999999999
Q ss_pred EEEECCCCCeeccc
Q 001367 647 KILETPESNSVDAA 660 (1091)
Q Consensus 647 ~iwd~~~~~~~~~~ 660 (1091)
++|++.+++.+...
T Consensus 374 ~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 374 KFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECCC-------
T ss_pred EEEECCCCcccccc
Confidence 99999988665543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=306.86 Aligned_cols=289 Identities=16% Similarity=0.255 Sum_probs=243.6
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
....|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 57889999875 668875 8999999999998775321 557889999999999999999999
Q ss_pred CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecCCCcceEEEeec
Q 001367 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 494 (1091)
.|++|+|||+.+++.++ .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987655 678999999998885 45 8999999999999998864 4567889999999999985
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCc----eeeecCCCCcEEEEEEcCCCCEE-EEEecCCCCceEEEEEecCCceeeE
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~l-~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
+++.++++++.|+.+++|+....+. ......+...|.+++|+|++..+ ++++. ..++.|++||+.+++...
T Consensus 240 --~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 --PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp --TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred --CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 4678999999999999999987653 34567788899999999976544 44443 237789999999999998
Q ss_pred EEecccccccceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 570 ~~~~~~~~~~~v~~v~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
.+..+. .+.++.|+|+++.+++++ .|+.|++||+.+++++..+.+|.. .|.+++|+|+|++|++++.|++|+
T Consensus 316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEE
T ss_pred eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEE
Confidence 887654 789999999999998865 789999999999999999987754 799999999999999999999999
Q ss_pred EEECCCCCeecccc
Q 001367 648 ILETPESNSVDAAG 661 (1091)
Q Consensus 648 iwd~~~~~~~~~~~ 661 (1091)
+||+.+........
T Consensus 390 iWdv~~~~~~~~~~ 403 (420)
T 4gga_A 390 LWRCFELDPARRRE 403 (420)
T ss_dssp EECCSCSSCC----
T ss_pred EEECCCCCccchhh
Confidence 99998765544443
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-34 Score=321.12 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=225.3
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCC--CceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
...|.++|++++|+|||+ +||+|+.||.|+|||+.++ +.+.. +.+|...|.+++|+|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK 66 (377)
T ss_dssp EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence 344667999999999998 6799999999999999987 44432 7789999999999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc---eeEEecC-
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG- 483 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~- 483 (1091)
+++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 99999999999999999999873344446778999999999999999 79999999999999999887 4778887
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCC------------------CceeeecCCCCcEEEEEEcCCCCEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL------------------GARVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------------~~~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
|...|.+++|++ ++.+|++++.||.|++||+... .....+ .+...|.+++|+|++++|+
T Consensus 145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 999999999965 6689999999999999998532 233344 7788999999999999999
Q ss_pred EEecCCCCceEEEEEecCCcee----eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----------
Q 001367 546 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------- 611 (1091)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~---------- 611 (1091)
+++. ++.|++||+.+++. +..+.+|. ..|.+++|+|+++++++++.++.+ +|+.....
T Consensus 222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 9986 66799999999887 77777777 889999999999999888777666 66554211
Q ss_pred -----------------------------eEEEEeC-----------CCCCCCCceEEEccC-CC---EEEEEECCCeEE
Q 001367 612 -----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK 647 (1091)
Q Consensus 612 -----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~ 647 (1091)
....... ..+...|.++++.+. +. .+++++.||.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 0000000 013346788886653 33 699999999999
Q ss_pred EEEC
Q 001367 648 ILET 651 (1091)
Q Consensus 648 iwd~ 651 (1091)
+||+
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=296.29 Aligned_cols=254 Identities=13% Similarity=0.157 Sum_probs=211.1
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCC--CceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
+.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+.. +.+|...|.+++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~ 61 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW 61 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEE
T ss_pred ceeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEe
Confidence 356789999999999999998 6799999999999999754 33332 7899999999999
Q ss_pred CCC--CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEEEeCCCCce--e
Q 001367 405 SPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR--T 478 (1091)
Q Consensus 405 spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~--~ 478 (1091)
+|+ +++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|+.|++||+.++.. .
T Consensus 62 s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 62 AHPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp CCGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred cCCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceee
Confidence 874 899999999999999999987422 23357789999999999998 77 899999999999999987642 4
Q ss_pred EEecCCCcceEEEeecccC-----------CceEEEEEecCCeEEEEecCCCC----ceeeecCCCCcEEEEEEcCCC--
Q 001367 479 YSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG-- 541 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~d~-- 541 (1091)
..+.+|...|.+++|+|.. ++.+|++++.|+.|++||++... ....+..|...|.+++|+|++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 6678999999999998752 35799999999999999998766 345678899999999999985
Q ss_pred -CEEEEEecCCCCceEEEEEecCCce--e-eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001367 542 -RRLFSCGTSKEGESFLVEWNESEGA--I-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 542 -~~l~~~~~~~~~~~~i~iwd~~~~~--~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1091)
++|++++. ++.|++||+.++. . ...+. ...+...|.+++|+|++++|++++.|+.|++|+..
T Consensus 219 ~~~las~s~----D~~v~iWd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 219 RSYMASVSQ----DRTCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SEEEEEEET----TSCEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEEEC----CCcEEEEEeCCCCCccceeeee-cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 78888886 6679999988743 1 12221 11224789999999999999999999999999976
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-33 Score=310.07 Aligned_cols=316 Identities=11% Similarity=0.031 Sum_probs=247.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
+-...|.+|+|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 13 ~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg--- 64 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE--- 64 (588)
T ss_dssp CCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC---
T ss_pred HhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC---
Confidence 4456999999999998 789999999999 7555532 45799999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc-----
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA----- 486 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----- 486 (1091)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||.|++||..+ ++..+. |..
T Consensus 65 ----~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~ 130 (588)
T 2j04_A 65 ----FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSR 130 (588)
T ss_dssp ----CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTT
T ss_pred ----CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccc
Confidence 4555555554432211 11 5678999999999999 799999999999999544 677777 665
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-------eeee----cCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
.|.+++|+ +||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. ++
T Consensus 131 sv~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~ 202 (588)
T 2j04_A 131 TYHCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NN 202 (588)
T ss_dssp CEEEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TC
T ss_pred cEEEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CC
Confidence 49999995 5789999999999999999998753 3444 5567799999999999 666665 66
Q ss_pred EEEEEecCCcee---eEEEe-cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE-
Q 001367 556 FLVEWNESEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF- 630 (1091)
Q Consensus 556 ~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~- 630 (1091)
.+++||+.++.. .+.+. +|. ..|.+++|+ ++.+++++ +++|++||+.+++.......| ...+..++|
T Consensus 203 tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~~ 274 (588)
T 2j04_A 203 SVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPLN 274 (588)
T ss_dssp CEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEET
T ss_pred eEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEee
Confidence 799999988774 34553 444 789999999 68888887 699999999988875444343 447999999
Q ss_pred -ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccc
Q 001367 631 -NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKS 709 (1091)
Q Consensus 631 -s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i 709 (1091)
+|++..+++++.+|+ ++|.... +++ +|++..+++. |+++
T Consensus 275 ~s~d~~~La~a~edG~-klw~~d~----------------~~~---------------------spd~~l~a~~--d~~v 314 (588)
T 2j04_A 275 HEKESTILLMSNKTSY-KVLLEDE----------------LHV---------------------TADNIIAPYL--EKKF 314 (588)
T ss_dssp TCSSCEEEEECSSCEE-EEEESSS----------------EEE---------------------ECCCSSHHHH--HHHH
T ss_pred eCCCCCEEEEEcCCCC-EEEeecc----------------EEE---------------------CCCceEEEEc--CCEE
Confidence 999999999999999 9999771 233 7777777775 8999
Q ss_pred ccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeec
Q 001367 710 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 753 (1091)
Q Consensus 710 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 753 (1091)
++|+..... .. ...+...|.+++|||||+.+++++.
T Consensus 315 ~lW~~~g~~---l~-----~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 315 KKWSTIWNE---FN-----NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHTTTTTTS---SS-----SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEECCCCc---ee-----eeccceEEEEEEECCCCCEEEEEEe
Confidence 999975332 11 1123667999999999998877764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=312.15 Aligned_cols=306 Identities=9% Similarity=0.064 Sum_probs=258.0
Q ss_pred eeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcc---cceeEEEeccccCeeEEEEcCC----C---CceEEE
Q 001367 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAP----C---KQISVI 459 (1091)
Q Consensus 390 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~d----~---~~~~l~ 459 (1091)
..+.+|...|++++|+| ++|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ + + +|+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~ 85 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVA 85 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEE
Confidence 34789999999999999 8999999999999999998761 1123367799999999999999 8 8 899
Q ss_pred EeeCCCcEEEEeCCCCce-----eEEecCC-----CcceEEEeeccc--CCceE-EEEEecCCeEEEEecCC------CC
Q 001367 460 TCGDDKTIKVWDAVTGSR-----TYSFEGH-----GAPVYSLCPHAK--ENIHF-IFSISVDGKIKAWLYDS------LG 520 (1091)
Q Consensus 460 s~~~d~~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~~~--~~~~~-l~s~~~dg~i~iwd~~~------~~ 520 (1091)
+++.|+.|++||+.+++. +..+..| ...|.+++|++. +++.+ |++++.||.|++||+.. ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999999987 8889888 599999999732 56778 99999999999999988 55
Q ss_pred cee-----ee-------cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEec---ccccccceEEEE
Q 001367 521 ARV-----DY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG---LQLQHNSVSVVH 585 (1091)
Q Consensus 521 ~~~-----~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~v~ 585 (1091)
... .+ ..+...+.+++|+|++ .+++++. ++.|++||+.+++.+..+.. |......|.+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 554 55 4577889999999999 8888875 67799999999999999988 611138999999
Q ss_pred EcCCCCEEEEEeCC---CeEEEEECCCCeeEEEEeCCC-----------CCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 586 FDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG-----------GLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 586 ~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
|+|+++++++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.||.|++||+
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 99999999999999 999999999999998887610 2347899999999999999999999999999
Q ss_pred CCCCeecccc------cc---------------cccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 652 PESNSVDAAG------VL---------------SDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 652 ~~~~~~~~~~------~~---------------~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
.+++.+..+. .| ...|.+++|+|++..++.+ ..+++.+++++.|+.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~-----------~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG-----------ADLNESLCCVCLDRSIR 389 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT-----------CTTSCEEEEEETTTEEE
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc-----------ccccceEEEecCCCcEE
Confidence 9998888888 77 8899999997665433332 23347899999999999
Q ss_pred ccccc
Q 001367 711 VEKPL 715 (1091)
Q Consensus 711 ~w~~~ 715 (1091)
+|++.
T Consensus 390 iw~~~ 394 (397)
T 1sq9_A 390 WFREA 394 (397)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 99976
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=326.86 Aligned_cols=212 Identities=19% Similarity=0.306 Sum_probs=184.5
Q ss_pred EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-----ceeEEecCCCcceEEEeecccCCceEEEEEecCC
Q 001367 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 509 (1091)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 509 (1091)
..+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|+ +++.+|++++.||
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS--SDGQFALSGSWDG 452 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTS
T ss_pred hhcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC--CCCCEEEEEeCCC
Confidence 357899999999999998644 8999999999999998764 3457789999999999995 4678999999999
Q ss_pred eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC
Q 001367 510 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1091)
Q Consensus 510 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 589 (1091)
.|++||+.++.....+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|+
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 9999999999888899999999999999999999999986 667999998766554444333334588999999998
Q ss_pred C--CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 590 K--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 590 ~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
+ ..+++++.|++|++||+.+++....+..|.. .|.+++|+|++++|++++.||.|++||+.+++
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 7 5799999999999999999999988887654 79999999999999999999999999987654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-32 Score=308.31 Aligned_cols=347 Identities=14% Similarity=0.131 Sum_probs=246.6
Q ss_pred heeeecccCCCCcEEEEEcC-CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fsp-dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.....+.+|.+.|++++|+| +++ +||+|+.||.|+|||+.+++.......... .........+|...|.+++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEE
T ss_pred cceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEE
Confidence 45567889999999999999 998 679999999999999999877653221100 0000011246999999999
Q ss_pred ECC-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC---CCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
|+| ++.+|++++.|+.|++||+.+++... .+ .+...+.++.|++. +. ++++++.|+.|++||+.+++.+.
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCE
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceee
Confidence 999 78899999999999999999886544 23 37788999999884 44 79999999999999999999999
Q ss_pred EecCCCcceEEEeecccCCce-EEEEEecCCeEEEEecCCCCce-eee---------------cCCCCcEEEEEEcCCCC
Q 001367 480 SFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGAR-VDY---------------DAPGLGCTRMAYSANGR 542 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~-~~~---------------~~~~~~i~~~~~s~d~~ 542 (1091)
.+.+|...|.+++|++. +. ++++++.||.|++||++..... ..+ ..+...|.+++|+|+++
T Consensus 181 ~~~~~~~~v~~~~~~~~--~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 181 ILQGHRQEILAVSWSPR--YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp EECCCCSCEEEEEECSS--CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eecCCCCcEEEEEECCC--CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 99999999999999654 44 6899999999999999876522 222 45777899999999999
Q ss_pred EEEEEecCCCCceEEEEEecCCceeeEEEecccc--cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001367 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1091)
+|++++. ++.|++||+.+++....+..+.. ....+........+..+++++.++.|++||+.+++.+..+..+.
T Consensus 259 ~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 259 HLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp EEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred EEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 9999986 56699999999877655443221 01122222333445677778889999999999999999998765
Q ss_pred CCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcc
Q 001367 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPE 700 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l 700 (1091)
. .|.+++|+|++++|++++.||.|++|++.+.+.+......... ..+. .......
T Consensus 335 ~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~--------------------~~~~~~~ 389 (408)
T 4a11_B 335 K--TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN--------------------PAFEDAW 389 (408)
T ss_dssp S--CEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------
T ss_pred C--eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc--------------------cccceee
Confidence 4 7999999999999999999999999999988766544332211 1111 2233445
Q ss_pred ccccccccccccccc
Q 001367 701 ISVEAENKSEVEKPL 715 (1091)
Q Consensus 701 ~s~~~d~~i~~w~~~ 715 (1091)
.+.+.++.+++|+..
T Consensus 390 ~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 390 SSSDEEGGTSAWSHP 404 (408)
T ss_dssp ---------------
T ss_pred cccCccCceeecCCc
Confidence 567778999999854
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=313.54 Aligned_cols=331 Identities=10% Similarity=0.034 Sum_probs=247.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 528 ~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
-...|.+++|+|||+++++++. +++|+ |...++. +.+|. ..|.+++|+|+| .++.+.+|+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~---l~gh~---~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKD---INCNS---KNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSC---CSSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred hhccEEEEEECCCCCEEEEEcC----Cceee--cccccce---ecCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence 3457889999999999999876 67787 6555543 35666 899999999998 4555555554
Q ss_pred CCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCc
Q 001367 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1091)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~ 687 (1091)
+... .+.... ...|.+++|||+|++||+++.||.+++|+..+ .+..+. |...+
T Consensus 75 ~~~~---~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~-------------------- 127 (588)
T 2j04_A 75 QQNG---LLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL-------------------- 127 (588)
T ss_dssp CSSC---SSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred CCce---EeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence 3222 222112 35799999999999999999999999999543 211111 11100
Q ss_pred ccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccc
Q 001367 688 VSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 767 (1091)
Q Consensus 688 ~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~ 767 (1091)
....+.+++|||||++|++++.||++++|++.....
T Consensus 128 --------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l 163 (588)
T 2j04_A 128 --------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE 163 (588)
T ss_dssp --------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred --------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 134688999999999999999999999999764321
Q ss_pred ccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCcee---EEEe-cCCCC
Q 001367 768 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPSP 843 (1091)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---~~~~-~~~~~ 843 (1091)
.. +++ ..+.+......+|...|.+++|+||| +++++.|+.|++||+.+++. .+++ .+|..
T Consensus 164 ~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 164 NT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp TC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred cc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 00 000 00122222223588999999999999 55555699999999988774 3566 46788
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEE--CCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQT 921 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~las~s~Dg~i~vwd~~~~~~~~ 921 (1091)
.|.+++|+ ++.||+++ +++|++||+.+++......+|.+.|..++| +||+..|+++++||+ ++|..+.
T Consensus 228 ~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~----- 297 (588)
T 2j04_A 228 KITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE----- 297 (588)
T ss_dssp CCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-----
T ss_pred cEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-----
Confidence 99999998 37888887 699999999988774444489999999999 999999999999999 9999872
Q ss_pred eeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEc
Q 001367 922 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 922 ~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++.
T Consensus 298 -------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 298 -------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred -------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEEe
Confidence 5599999988875 9999999976444 332 333 778999999999999998763
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=291.07 Aligned_cols=252 Identities=17% Similarity=0.299 Sum_probs=212.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~i 469 (1091)
+.+|...|.+++|+|+|++||+|+.|++|+|||+.++.. +....+.+|.++|.+++|+++ ++ +|++++.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 233478899999999999874 77 8999999999999
Q ss_pred EeCCCCc--eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--eeeecCCCCcEEEEEEcCC-----
Q 001367 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 540 (1091)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d----- 540 (1091)
||+.+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++.... ...+..|...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999998765578999999999999999987642 3566788889999999997
Q ss_pred --------CCEEEEEecCCCCceEEEEEecCCce----eeEEEecccccccceEEEEEcCCC---CEEEEEeCCCeEEEE
Q 001367 541 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 605 (1091)
Q Consensus 541 --------~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~v~~~~~~---~~l~~~s~dg~i~iw 605 (1091)
+++|++++. ++.|++||+.+++ ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 6679999998765 556677777 899999999985 789999999999999
Q ss_pred ECCCCe--eE-EEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCC
Q 001367 606 DMNKVQ--LL-TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 606 d~~~~~--~~-~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
|++++. .. ..+........|.+++|+|++++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 988743 12 2232233345689999999999999999999999999763
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-32 Score=304.51 Aligned_cols=290 Identities=12% Similarity=0.103 Sum_probs=247.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+..|..+|.+++|+|++++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44599999999999999999999999999999999875 123346789999999999999999 899999999999999
Q ss_pred CCCCceeEE--ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc----eeeecCCCCcEEEEEEcCCCCEEE
Q 001367 472 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 472 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
+.+++.... +..|...|.+++|++ ++.++++++.||.|++||++.... ......+...+.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 988875544 467999999999964 668999999999999999998774 223356788999999999999999
Q ss_pred EEecCCCCceEEEEEec------------------CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 546 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 546 ~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
+++. ++.|++||+ ..++.+..+..|. ..|.+++|+|+++++++++.|+.|++||+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9986 566999995 4677888887766 89999999999999999999999999999
Q ss_pred CCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCC--CC------------------------------
Q 001367 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SN------------------------------ 655 (1091)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~~------------------------------ 655 (1091)
.+++.+..+..+.. .+.+++|+|++++++++ .|+.|++|++.+ +.
T Consensus 232 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 232 DKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 99999999887644 68999999999988887 899999999987 31
Q ss_pred --ee------ccc-ccccccceeeeeccccccccccccCCcccCCCCCCCC---Ccccccccccccccccccc
Q 001367 656 --SV------DAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDV---KPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 656 --~~------~~~-~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~---~~l~s~~~d~~i~~w~~~~ 716 (1091)
.. ..+ .+|...|+++++. +++| +.+++++.||.|++|++..
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~--------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVL--------------------SGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEE--------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccCccccccccccccCCcceeEEe--------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence 00 222 4788889988864 4666 8999999999999999763
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=286.32 Aligned_cols=283 Identities=16% Similarity=0.265 Sum_probs=236.4
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
...+|+||+++ +||+|. |++|+|||+.+|+++.... +.+|...|++++|+|++++||+|+
T Consensus 27 y~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs 86 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 86 (318)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEE
Confidence 35789999987 567775 8999999999998875421 557889999999999999999999
Q ss_pred CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecCCCcceEEEeec
Q 001367 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 494 (1091)
.|++|++||+.+++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+..++ ..+..+.+|...+..+.+.
T Consensus 87 ~Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 87 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp TTSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999987655 67899988877665 456 7999999999999998876 4567788999999999985
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCce----eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEE
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1091)
+++.++++++.||.|++||+.+++.. .....+...+.+++++|++..++.... +..++.|++||.........
T Consensus 160 --~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 160 --PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp --TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEE
T ss_pred --CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEeccccccccc
Confidence 46679999999999999999876543 345667778999999998765543322 13377899999998887666
Q ss_pred EecccccccceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEE
Q 001367 571 YQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1091)
.... ..+..+.|+|+++.+++++ .|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++++.||+|++
T Consensus 237 ~~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 237 VDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp EECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEE
T ss_pred ccce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEE
Confidence 5543 5799999999999988765 799999999999999999987754 7999999999999999999999999
Q ss_pred EECCCC
Q 001367 649 LETPES 654 (1091)
Q Consensus 649 wd~~~~ 654 (1091)
||+.+.
T Consensus 311 Wd~~~~ 316 (318)
T 4ggc_A 311 WRCFEL 316 (318)
T ss_dssp ECCSCC
T ss_pred EECCCC
Confidence 998754
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=308.52 Aligned_cols=301 Identities=13% Similarity=0.199 Sum_probs=232.9
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC------------ccE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV 399 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V 399 (1091)
.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ........+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCce
Confidence 4677999999999998 679999999999999998763110000 0000112266888 889
Q ss_pred EEEEECCCC--CEEEEEECCCEEEEEEeeCCcccc------------------------------------eeEE-Eecc
Q 001367 400 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQLE-IDAH 440 (1091)
Q Consensus 400 ~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~~~-~~~h 440 (1091)
.+++|+|++ .+|++++.|++|++||+.++.... .... ..+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999998744210 0011 3579
Q ss_pred ccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC-CceeE-------EecCCCcceEEEeecccCCc-eEEEEEecCCeE
Q 001367 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 511 (1091)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i 511 (1091)
...|.+++|+|+++ +|+++ .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 3568999999999965 44 799999999999
Q ss_pred EEEecCCCCc----eeeecCCCC------------cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC-ceeeEEEecc
Q 001367 512 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 574 (1091)
Q Consensus 512 ~iwd~~~~~~----~~~~~~~~~------------~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~ 574 (1091)
++||+++... ...+..+.. .|.+++|+|++++|++++. +.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence 9999998876 567777765 8999999999999998863 5799999997 8888888877
Q ss_pred ccccc------------ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-----------------------
Q 001367 575 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 619 (1091)
Q Consensus 575 ~~~~~------------~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------------- 619 (1091)
..... .+..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876422111
Q ss_pred -------CCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 620 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 620 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.....|..++|+|++++||+++.++ +++|..+
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998875 7788644
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=302.34 Aligned_cols=293 Identities=17% Similarity=0.225 Sum_probs=245.7
Q ss_pred eecCCCccEEEEEECCC----CCEEEEEECCCEEEEEEeeCCcccceeEEEe--ccccCeeEEEEcCC----CCceEEEE
Q 001367 391 LVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVIT 460 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d----~~~~~l~s 460 (1091)
+..+|...|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ ++ +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 46689999999999984 4566666677799999999887665443333 26678999999999 55 8999
Q ss_pred eeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee---cCCCCcEEEEEE
Q 001367 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAY 537 (1091)
Q Consensus 461 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~ 537 (1091)
++.||.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999652 5679999999999999999998888777 678889999999
Q ss_pred cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEec-------------------------ccccccceEEEEEcCCCCE
Q 001367 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKDQ 592 (1091)
Q Consensus 538 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~v~~~~~~~~ 592 (1091)
+|+++++++++. ++.|++||+.+++....+.. ...+...|.+++|+ +++
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 243 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL 243 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence 999999999986 56699999998765543332 00134889999998 679
Q ss_pred EEEEeCCCeEEEEECCCCee--------------EEEEeCCCCCCCCceEEEccC--CCEEEEEECCCeEEEEECCCCCe
Q 001367 593 ILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
+++++.|+.|++||+.++.. +..+..+.. .|.+++|+|+ +++|++++.||.|++||+.+++.
T Consensus 244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 99999999999999987643 666665544 6899999999 99999999999999999998864
Q ss_pred ec----ccccc--cccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 657 VD----AAGVL--SDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 657 ~~----~~~~~--~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
.. .+..| ...|.+++| +|+++.+++++.|+.|++||+.
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~---------------------s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSF---------------------SRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEE---------------------CTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccceEEcccccCCceEEEEe---------------------CCCCCeEEEEeCCCEEEEEEec
Confidence 43 56666 688999999 7889999999999999999974
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=297.90 Aligned_cols=291 Identities=13% Similarity=0.163 Sum_probs=241.8
Q ss_pred eeecCCCccEEEEEECCCCCEEE-EEEC---CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC---CCceEEEEee
Q 001367 390 ALVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG 462 (1091)
Q Consensus 390 ~~~~~h~~~V~~l~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~~~l~s~~ 462 (1091)
.++.+|...|.+++|+|++..++ +|+. |+.|++||+.+++.... ...+|...|.+++|+|+ ++ +|++++
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 34678999999999999996655 5554 89999999998864432 23379999999999999 57 799999
Q ss_pred CCCcEEEEeCCCCc-eeEEecCCCcceEEEeecc----cCCceEEEEEecCCeEEEEecCCCC-ceeeecCCCC----cE
Q 001367 463 DDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GC 532 (1091)
Q Consensus 463 ~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~i 532 (1091)
.||.|++||+.+++ .+..+.+|...|.++.+.+ ++++.+|++++.||.|++||+.... ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 99999999999988 8899999999999997643 5678899999999999999999887 5556655443 78
Q ss_pred EEEE----EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC---CCCEEEEEeCCCeEEEE
Q 001367 533 TRMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIW 605 (1091)
Q Consensus 533 ~~~~----~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~l~~~s~dg~i~iw 605 (1091)
.+++ |+|+++++++++. ++.|++||+.+++.... ..+. ..|.+++|+| +++++++++.||.|++|
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 8888 7899999999976 66799999999987544 3344 7899999999 99999999999999999
Q ss_pred ECCCCeeEEEEe-----CCCCCCCCceEEEccCCC-EEEEEECCCeEEEEECCCCC-------------------eeccc
Q 001367 606 DMNKVQLLTTID-----AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPESN-------------------SVDAA 660 (1091)
Q Consensus 606 d~~~~~~~~~~~-----~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~-------------------~~~~~ 660 (1091)
|+.+++....+. .+ ...|.+++|+|+++ ++++++.||.|++|++..+. .+..+
T Consensus 240 d~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAH--KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEETTTEEEEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred eCcCCCcccceeeeccCCC--cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 998876654443 44 34799999999998 89999999999999988542 45566
Q ss_pred ccccccceeeeeccccccccccccCCcccCCCCCCCCCccc-cccccccccccccc
Q 001367 661 GVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEI-SVEAENKSEVEKPL 715 (1091)
Q Consensus 661 ~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~-s~~~d~~i~~w~~~ 715 (1091)
.+|...|.+++| +|+++.++ +++.|+.|++|++.
T Consensus 318 ~~~~~~v~~~~~---------------------s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 318 TLSTQPISSLDW---------------------SPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp ECCSSCEEEEEE---------------------CSSSTTEEEEEETTSEEEEEEEC
T ss_pred ccCCCCeeEEEE---------------------cCCCCeEEEEecCCCcEEEEECC
Confidence 778888999988 78888888 89999999999976
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=296.14 Aligned_cols=253 Identities=15% Similarity=0.204 Sum_probs=205.2
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 406 (1091)
.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++.... ..+.+|...|.+++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence 45679999999999999998 679999999999999988753211 12778999999999987
Q ss_pred -CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEEEeCCCCce---eEE
Q 001367 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS 480 (1091)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~---~~~ 480 (1091)
++++||+|+.|++|++||+.++... ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++.. ...
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence 4899999999999999999886422 23367899999999999998 66 799999999999999987632 355
Q ss_pred ecCCCcceEEEeecccC---------------CceEEEEEecCCeEEEEecCCCC---ceeeecCCCCcEEEEEEcCCC-
Q 001367 481 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG- 541 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~d~- 541 (1091)
+.+|...|.+++|++.. ++.+|++++.|+.|++||++... ....+..|...|.+++|+|++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 67899999999997652 14689999999999999997553 445677888999999999987
Q ss_pred ---CEEEEEecCCCCceEEEEEecCCc---e-eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001367 542 ---RRLFSCGTSKEGESFLVEWNESEG---A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 542 ---~~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1091)
++|++++. ++.|++|++.+. . ....+..|. ..|.+++|+|++++|++++.|++|++|+..
T Consensus 226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999886 778999998763 1 123344454 789999999999999999999999999975
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=287.10 Aligned_cols=280 Identities=15% Similarity=0.170 Sum_probs=246.5
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
.+.+|...|++++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 38899999999999 999999999999999999998875444 5678999999999999999 89999999999999
Q ss_pred eCCCC---ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC-CCCEEEE
Q 001367 471 DAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFS 546 (1091)
Q Consensus 471 d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~ 546 (1091)
++... +.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.+++++| +++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 98754 667888999999999998 345899999999999999 5666777888999999999988 8999999
Q ss_pred EecCCCCceEEEEEecCCceeeEEEec-ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCC
Q 001367 547 CGTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1091)
++. ++.|++|| .++....+.. +. ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+.. .|
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i 228 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FV 228 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eE
Confidence 886 56699999 5566666766 44 8899999999988 99999999999999999999999987654 79
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccc
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEA 705 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~ 705 (1091)
.+++|+|++ .+++++.||.|++||+.+++....+..+...+.+++| +|+++ +++++.
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~---------------------~~~~~-~~~~~~ 285 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC---------------------MSNGD-IIVGSS 285 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEE---------------------CTTSC-EEEEET
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEE---------------------ccCCC-EEEEeC
Confidence 999999999 5899999999999999999999999999999999999 67776 667899
Q ss_pred cccccccccccc
Q 001367 706 ENKSEVEKPLFA 717 (1091)
Q Consensus 706 d~~i~~w~~~~~ 717 (1091)
|+.|++|++...
T Consensus 286 dg~i~iw~~~~~ 297 (313)
T 3odt_A 286 DNLVRIFSQEKS 297 (313)
T ss_dssp TSCEEEEESCGG
T ss_pred CCcEEEEeCCCC
Confidence 999999998744
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=294.65 Aligned_cols=286 Identities=9% Similarity=0.057 Sum_probs=241.9
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
....+|.+.|++++|+|+++ +|++|+.||.|+|||+.+++.... ...+.+|...|.+++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~ 67 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEES
T ss_pred ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCC
Confidence 34568999999999999998 679999999999999998872211 0114479999999999999
Q ss_pred CC-EEEEEECCCEEEEEEe-eCCcccceeEEEec--cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC---------
Q 001367 408 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--------- 474 (1091)
Q Consensus 408 g~-~las~~~d~~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--------- 474 (1091)
++ +|++|+.|+.|++||+ .+++. ..+.+ |...|.+++|+| ++ ++++++.|+.|++||+.+
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence 99 9999999999999999 87653 35778 999999999999 77 899999999999999988
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC-CCc--eeeecCCCCcEEEEEEcC-CCCEEEEEecC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSA-NGRRLFSCGTS 550 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~ 550 (1091)
++++..+. |...|.+++|++ ++ +++++.|+.|++||++. ... ......+...+.+++|+| +++++++++.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~- 214 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI- 214 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence 77777776 889999999954 33 99999999999999988 443 334556777899999999 9999999986
Q ss_pred CCCceEEEEEecCCc------eeeEEEecccc------cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 551 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
++.|++|++... +....+..+.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 667999999887 77778887751 124899999999999999999999999999999999988876
Q ss_pred C-CCCCCCceEEEccCCCEEEEEECCCe-EEEEE
Q 001367 619 G-GGLPENPRICFNKNGTLLAVIANENR-IKILE 650 (1091)
Q Consensus 619 ~-~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iwd 650 (1091)
+ .. .|.+++ |++++|++++.||. .+.+.
T Consensus 292 ~h~~--~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FNED--SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CSSS--EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ccCC--CceEec--CCCCeEEEEecCCccccccc
Confidence 5 43 688888 99999999999998 44444
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-31 Score=295.60 Aligned_cols=294 Identities=17% Similarity=0.205 Sum_probs=240.9
Q ss_pred CchheeeecccCCCCcEEEEEcCC---CceEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCCCc
Q 001367 322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1091)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~fspd---g~~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1091)
.|...++.+.+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|..
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~ 87 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG 87 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence 456778889999999999999999 56 789999999999999998 443311 1667999
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEE--cCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
.|.+++|+|++++|++++.|+.|++||+.+++... +.+|...|.+++| +++++ +|++++.|+.|++||+.++
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence 99999999999999999999999999999876443 5679999999999 88888 8999999999999999999
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec--CCCCcEEEEEEcCCCCE----EEEEec
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT 549 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~----l~~~~~ 549 (1091)
+.+..+..+. .+.++.+.. ..+++++.++.+++|+++......... .......++++.++... +++++.
T Consensus 162 ~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 162 NPMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp SCSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred cEEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 9999988665 555555532 378899999999999998766554332 23345666666665554 888775
Q ss_pred CCCCceEEEEEecCCc---eeeEEEecccc---------cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001367 550 SKEGESFLVEWNESEG---AIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~---------~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1091)
++.|++||+... .....+.+|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 677999999987 55667777651 01169999999999999999999999999999999998887
Q ss_pred CCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
.+.. .|.+++|+|++++|++++.|+..+.|+.
T Consensus 313 ~~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 313 QLDQ--PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CCSS--CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CCCC--CceEEEECCCCCeEEEEecccccccccc
Confidence 6644 7999999999999999999875554443
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-32 Score=304.37 Aligned_cols=242 Identities=13% Similarity=0.106 Sum_probs=199.0
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCC--cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
..|.++|.+++|+|+|++||+|+.|+.|++||+.++ +... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVY 82 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 346789999999999999999999999999999987 3333 5779999999999999999 79999999999999
Q ss_pred eCCCCc---eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc---eeeecC-CCCcEEEEEEcCCCCE
Q 001367 471 DAVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDA-PGLGCTRMAYSANGRR 543 (1091)
Q Consensus 471 d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~i~~~~~s~d~~~ 543 (1091)
|+.+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||++..+. ...+.. |...|.+++|+|++++
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred EcCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 999887 6778889999999999965 667999999999999999998763 556666 8899999999999999
Q ss_pred EEEEecCCCCceEEEEEecC------------------CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001367 544 LFSCGTSKEGESFLVEWNES------------------EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iw 605 (1091)
|++++. ++.|++||+. .++.+..+ +|. ..|.+++|+|++++|++++.||.|++|
T Consensus 161 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 161 LAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALAYAGHDSSVTIA 232 (377)
T ss_dssp EEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred EEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 999986 5669999985 34555555 554 889999999999999999999999999
Q ss_pred ECCCCee----EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 606 DMNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 606 d~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
|+.+++. +..+..+.. .|.+++|+|++++|++++.++.+ +|+..
T Consensus 233 d~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 233 YPSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred ECCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999887 666665544 68999999999999998877666 66655
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=298.64 Aligned_cols=280 Identities=19% Similarity=0.247 Sum_probs=241.6
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
.++.|+||++ ++||+|. |++|+|||+.+|+..+. ..+.+|...|++++|+|+|+ +|++|+.||.|++||+.++++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 4678999986 4788775 89999999999976543 24567888999999999999 899999999999999999999
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce-eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
+..+.+|...+.++++ ++.++++++.|+.+++||....... ..+..|...+..+.++|+++++++++. ++.
T Consensus 182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~ 253 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL 253 (420)
T ss_dssp EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence 9999999999999887 3468999999999999998875544 467889999999999999999999986 667
Q ss_pred EEEEecCCcee----eEEEecccccccceEEEEEcCCCCEE-EE--EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 557 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 557 i~iwd~~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l-~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
+++|+..+++. +.....+. ..|.+++|+|++..+ ++ |+.|++|++||+.+++....+..+. .+.++.
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~ 327 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL 327 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence 99999987653 34444544 889999999987654 44 3479999999999999999887664 478999
Q ss_pred EccCCCEEEEEE--CCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 630 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 630 ~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
|+++++.+++++ .|+.|++||+.+++.+..+.+|...|++++| +|+|+.+++++.|+
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~---------------------spdg~~l~S~s~D~ 386 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM---------------------SPDGATVASAAADE 386 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE---------------------CTTSSCEEEEETTT
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE---------------------cCCCCEEEEEecCC
Confidence 999999998876 6899999999999999999999999999999 88899999999999
Q ss_pred cccccccccc
Q 001367 708 KSEVEKPLFA 717 (1091)
Q Consensus 708 ~i~~w~~~~~ 717 (1091)
+|++|++...
T Consensus 387 tvriWdv~~~ 396 (420)
T 4gga_A 387 TLRLWRCFEL 396 (420)
T ss_dssp EEEEECCSCS
T ss_pred eEEEEECCCC
Confidence 9999997643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=300.46 Aligned_cols=279 Identities=21% Similarity=0.320 Sum_probs=240.8
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
...+|...|+|++| |++ ++++|+.||+|++||+.+++.+.. +.+|...|.+++| ++
T Consensus 128 ~~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~ 183 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DE 183 (435)
T ss_dssp CCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CS
T ss_pred cccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CC
Confidence 34567778999888 677 679999999999999999987764 7789999999999 88
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee---EEecCCC
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHG 485 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~ 485 (1091)
++|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++++.||.|++||+.++... ..+.+|.
T Consensus 184 ~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 256 (435)
T 1p22_A 184 RVIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 256 (435)
T ss_dssp SEEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCS
T ss_pred CEEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCC
Confidence 999999999999999999987554 6789999999999974 4 7999999999999999988766 6788999
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
..|.++++ ++.++++++.||.|++||+++.+....+..+...+.++.+ +++++++++. ++.|++||+.++
T Consensus 257 ~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~ 326 (435)
T 1p22_A 257 AAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECG 326 (435)
T ss_dssp SCEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTC
T ss_pred CcEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCC
Confidence 99999998 4569999999999999999999999999999999999988 5688999886 667999999999
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------eEEEEeCCCCCCCCceEEEccCCCE
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1091)
+.+..+.+|. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..+.. .|.+++| ++.+
T Consensus 327 ~~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~ 397 (435)
T 1p22_A 327 ACLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQ 397 (435)
T ss_dssp CEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSC
T ss_pred CEEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCE
Confidence 9999999887 88999998 78899999999999999997766 6777776654 7899999 6889
Q ss_pred EEEEECCCeEEEEECCCCCee
Q 001367 637 LAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
|++++.||.|++||+.+....
T Consensus 398 l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp EEECCSSSEEEEEC-------
T ss_pred EEEEeCCCEEEEEECCCCCCc
Confidence 999999999999999876443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-31 Score=289.61 Aligned_cols=251 Identities=18% Similarity=0.320 Sum_probs=204.9
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~ 468 (1091)
++.+|...|++++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++ ++ +|++++.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999987531 23468899999999999864 67 799999999999
Q ss_pred EEeCCCCc--eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc---eeeecCCCCcEEEEEEcCC---
Q 001367 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 540 (1091)
Q Consensus 469 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d--- 540 (1091)
+||+.+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567788999999999998876678999999999999999987643 2345567778999999997
Q ss_pred --------------CCEEEEEecCCCCceEEEEEecCCc---eeeEEEecccccccceEEEEEcCCC----CEEEEEeCC
Q 001367 541 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD 599 (1091)
Q Consensus 541 --------------~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~s~d 599 (1091)
+++|++++. ++.|++||+..+ +.+..+.+|. ..|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence 467888875 667999999755 4556677766 899999999986 789999999
Q ss_pred CeEEEEECCCC---e-eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCC
Q 001367 600 HVIKIWDMNKV---Q-LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 600 g~i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
++|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|++|++|+...
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999998762 1 11223323 24689999999999999999999999999763
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-30 Score=296.24 Aligned_cols=298 Identities=13% Similarity=0.165 Sum_probs=241.5
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CCCEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 413 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 413 (1091)
....+++++|+...++++|+.||.|+||++........ ....+.+|...|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35667999999877777889999999999965432210 0112678999999999999 9999999
Q ss_pred EECCCEEEEEEeeCCccc----ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe--cCCCcc
Q 001367 414 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP 487 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~ 487 (1091)
|+.||+|+|||+.++... .....+.+|...|.+++|+|+++. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987432 233468899999999999999843 8999999999999999999999999 889999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee-cCCCCc-EEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+... +.+++|+|++++++++.. +..++.|++||+.++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 99999965 6789999999999999999998888777 566654 899999999998888732 123788999999987
Q ss_pred ee-eEEEecccccccceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCee-EEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 566 AI-KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 566 ~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
+. +...... +...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .
T Consensus 256 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 256 EEPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp SSCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred cCCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 64 3333321 1367999999999999975 55799999999998874 444444333457999999999988764 5
Q ss_pred CCeEEEEECCCCC
Q 001367 643 ENRIKILETPESN 655 (1091)
Q Consensus 643 dg~i~iwd~~~~~ 655 (1091)
++.+++|++.++.
T Consensus 332 ~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 332 CEIARFYKLHERK 344 (402)
T ss_dssp TEEEEEEEEETTE
T ss_pred ceeEEEEEcCCCc
Confidence 6799999998753
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=289.22 Aligned_cols=307 Identities=10% Similarity=0.112 Sum_probs=227.0
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
.+.+.+|.+.|++++|+|+++ +||+|+.||.|+|||+.++...... ...+.+|...|.+++|+|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~ 67 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWAS 67 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECC
T ss_pred cccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcC
Confidence 356789999999999999998 6799999999999999987543211 112678999999999999
Q ss_pred --CCCEEEEEECCCEEEEEEeeCCccc------ceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEEEeCCCCc
Q 001367 407 --DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 407 --dg~~las~~~d~~i~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
|+++|++|+.|+.|++||+.+++.. .....+.+|...|.+++|+|+ ++ ++++++.|+.|++||+.+++
T Consensus 68 ~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTT
T ss_pred CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChH
Confidence 6999999999999999999987421 334467899999999999999 88 89999999999999999887
Q ss_pred eeEEec-------------CCCcceEEEeeccc-CCceEEEEEecCCeEEEEecCCCCc--eeeecCCCCcEEEEEEcCC
Q 001367 477 RTYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN 540 (1091)
Q Consensus 477 ~~~~~~-------------~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d 540 (1091)
.+..+. .|...+.+++|++. .++.++++++.++.+.+|+...... ...+..|...|.+++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence 665443 68889999999764 1357999999999998888776665 4567778889999999999
Q ss_pred C----CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE----eCCCeEEEEECCCCee
Q 001367 541 G----RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQL 612 (1091)
Q Consensus 541 ~----~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~----s~dg~i~iwd~~~~~~ 612 (1091)
+ ++|++++. ++.|++||+.++.......... .........+....+..+ .....+.+|+....+.
T Consensus 226 ~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 226 IGRWYQLIATGCK----DGRIRIFKITEKLSPLASEESL---TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp SSCSSEEEEEEET----TSCEEEEEEEECC------------------------------------------CCSEEEEE
T ss_pred CCCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcc---cceeccCCCcccccccccccccccceeeeecccccccE
Confidence 8 78988876 6679999998775544433322 233333344443333333 3445566777777777
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccc
Q 001367 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1091)
+..+..|.. .|.+++|+|++++|++++.||.|++|++.++..+..+
T Consensus 299 ~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 299 LSEHDDHNG--EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECTTSS--CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEecccc--cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 787776654 7999999999999999999999999999987655443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=295.84 Aligned_cols=253 Identities=14% Similarity=0.227 Sum_probs=207.9
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcc--------cceeEEEeccc------------cCeeEEEEcCCC-
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC- 453 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~~~~s~d~- 453 (1091)
|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 678999999999999999999999999999998752 12344678998 889999999998
Q ss_pred -CceEEEEeeCCCcEEEEeCCCCcee---------------------------------------EE-ecCCCcceEEEe
Q 001367 454 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC 492 (1091)
Q Consensus 454 -~~~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~ 492 (1091)
. .+++++.|+.|++||+.++... .. ..+|...|.+++
T Consensus 107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 7999999999999998775432 12 368999999999
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCCCceee--------ecCCCCcEEEEEEcCCC-CEEEEEecCCCCceEEEEEecC
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
|++ ++.+|+++ .||.|++||++....... +..+...|.+++|+|++ +++++++. ++.|++||+.
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~ 257 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR 257 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence 965 67799998 799999999985443332 45678899999999998 89999986 5679999999
Q ss_pred Ccee----eEEEecccc---------cccceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCCCCC-----
Q 001367 564 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE----- 624 (1091)
Q Consensus 564 ~~~~----~~~~~~~~~---------~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~----- 624 (1091)
+++. +..+..+.. +...|.+++|+|++++|++++. +.|++||+.+ ++.+..+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 9886 677777650 0128999999999999999999 9999999997 888888877643111
Q ss_pred --------CceEEEccCCCEEEEEECCCeEEEEECCCCCee
Q 001367 625 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 625 --------v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988665
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=292.26 Aligned_cols=283 Identities=16% Similarity=0.160 Sum_probs=241.9
Q ss_pred cCCCcc--EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEeeCCCcEEE
Q 001367 393 RDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 393 ~~h~~~--V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1091)
.+|... +.+++|++ ..+++++.|+.|++||+.+++... .+. .|...|.+++|+|+++ +|++++.||.|++
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~---~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~i 160 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSA---LAETDESTYVASVKWSHDGS--FLSVGLGNGLVDI 160 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEE---EEECCTTCCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeE---eeecCCCCCEEEEEECCCCC--EEEEECCCCeEEE
Confidence 355544 55567765 568888899999999999987554 233 4889999999999999 8999999999999
Q ss_pred EeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC-CCceeeecCCCCcEEEEEEcCCCCEEEEEe
Q 001367 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1091)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 548 (1091)
||+.+++.+..+.+|...|.+++| ++.++++++.||.|++||++. ......+..+...|.+++|+|+++++++++
T Consensus 161 wd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 161 YDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 999999999999999999999998 335999999999999999994 555667888999999999999999999998
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE-Ee--CCCeEEEEECCCCeeEEEEeCCCCCCCC
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1091)
. ++.|++||+.+++.+..+..|. ..|.+++|+|++..+++ ++ .|+.|++||+.+++.+..+..+. .+
T Consensus 237 ~----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~---~v 306 (401)
T 4aez_A 237 N----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS---QV 306 (401)
T ss_dssp T----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS---CE
T ss_pred C----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC---cE
Confidence 6 5669999999999998888777 89999999998765555 44 69999999999999998887543 58
Q ss_pred ceEEEccCCCEEEEEE--CCCeEEEEECCCCCeec--ccccccccceeeeeccccccccccccCCcccCCCCCCCCCccc
Q 001367 626 PRICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEI 701 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~ 701 (1091)
.+++|+|+++++++++ .||.|++|++.++.... .+.+|...|.+++| +|+++.++
T Consensus 307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~---------------------s~dg~~l~ 365 (401)
T 4aez_A 307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSAL---------------------SPDGRILS 365 (401)
T ss_dssp EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEE---------------------CTTSSEEE
T ss_pred EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEE---------------------CCCCCEEE
Confidence 9999999999999954 89999999999864443 46688899999998 78899999
Q ss_pred cccccccccccccccc
Q 001367 702 SVEAENKSEVEKPLFA 717 (1091)
Q Consensus 702 s~~~d~~i~~w~~~~~ 717 (1091)
+++.|+.|++|++...
T Consensus 366 s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 366 TAASDENLKFWRVYDG 381 (401)
T ss_dssp EECTTSEEEEEECCC-
T ss_pred EEeCCCcEEEEECCCC
Confidence 9999999999998743
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=277.37 Aligned_cols=277 Identities=19% Similarity=0.254 Sum_probs=236.4
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
.++|+||+++ +||+| .|++|+|||+.+++.++.. .+.+|...|++++|+|+++ ++++|+.|++|++||+.+++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5779999986 77776 4899999999999866532 4567888999999999999 8999999999999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce-eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
..+.+|...+.++.+ ++..+++++.++.+++|+....... ..+..+...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988765 3468999999999999998876554 467788899999999999999999986 6679
Q ss_pred EEEecCCceee----EEEecccccccceEEEEEcCCCCEEE---EEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 558 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 558 ~iwd~~~~~~~----~~~~~~~~~~~~v~~v~~~~~~~~l~---~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
++||+.+++.. .....+ ...|.+++++|++..++ +++.++.|++||.............. .+..+.|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~---~v~~~~~ 248 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQH---QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSILW 248 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCC---CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS---CEEEEEE
T ss_pred eEEECCCCcccccceeeeccc---CCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee---eeeeeee
Confidence 99999887532 223333 37899999999876544 45688999999999988877765443 4789999
Q ss_pred ccCCCEEEEEE--CCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccc
Q 001367 631 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENK 708 (1091)
Q Consensus 631 s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~ 708 (1091)
+|+++.+++++ .|+.|++||+.+++.+..+.+|...|++++| +|+++++++++.|++
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~---------------------spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM---------------------SPDGATVASAAADET 307 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE---------------------CTTSSCEEEEETTTE
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE---------------------cCCCCEEEEEecCCe
Confidence 99999888765 6899999999999999999999999999999 788999999999999
Q ss_pred ccccccc
Q 001367 709 SEVEKPL 715 (1091)
Q Consensus 709 i~~w~~~ 715 (1091)
|++||+.
T Consensus 308 v~iWd~~ 314 (318)
T 4ggc_A 308 LRLWRCF 314 (318)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 9999975
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-30 Score=287.74 Aligned_cols=261 Identities=13% Similarity=0.156 Sum_probs=215.3
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
+++++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+..... ..+.+|...|++++|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-----------------~~~~~h~~~v~~~~~~ 64 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWA 64 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEEC
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceee-----------------eEecCCCCcEEEEEeC
Confidence 4577899999999999999998 679999999999999984332211 1277899999999999
Q ss_pred CC--CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEEEeCCCCc--eeE
Q 001367 406 PD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTY 479 (1091)
Q Consensus 406 pd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~ 479 (1091)
|+ +++|++|+.|+.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ...
T Consensus 65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~ 141 (379)
T 3jrp_A 65 HPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPI 141 (379)
T ss_dssp CGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEE
T ss_pred CCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeE
Confidence 87 999999999999999999997521 23367789999999999999 88 89999999999999999874 345
Q ss_pred EecCCCcceEEEeecccC-----------CceEEEEEecCCeEEEEecCCCCce----eeecCCCCcEEEEEEcCC---C
Q 001367 480 SFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSAN---G 541 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~d---~ 541 (1091)
.+.+|...|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ +
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 667899999999997642 5789999999999999999876543 456778899999999999 8
Q ss_pred CEEEEEecCCCCceEEEEEecCCceee--EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1091)
++|++++. ++.|++||+.++... ........+...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 222 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 222 SYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999886 566999999986421 1222222234789999999999999999999999999987543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=286.93 Aligned_cols=255 Identities=17% Similarity=0.302 Sum_probs=216.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~i 469 (1091)
+.+|...|++++|+|++++||+|+.|+.|+|||+..+. ......+.+|...|++++|+++ ++ +|++++.||.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 77899999999999999999999999999999998432 2333467899999999999987 77 8999999999999
Q ss_pred EeCCCCc--eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCC--ceeeecCCCCcEEEEEEcC------
Q 001367 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 539 (1091)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 539 (1091)
||+.+++ .+..+..|...|.+++|++..++.++++++.||.|++||+.... ....+..+...+.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999987 77888899999999999776437899999999999999998874 3446677888999999999
Q ss_pred -------CCCEEEEEecCCCCceEEEEEecCCce----eeEEEecccccccceEEEEEcCC---CCEEEEEeCCCeEEEE
Q 001367 540 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 605 (1091)
Q Consensus 540 -------d~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~s~dg~i~iw 605 (1091)
++.++++++. ++.|++||+.++. ....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 5569999998764 445566666 89999999999 8999999999999999
Q ss_pred ECCCCe---eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCe
Q 001367 606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
|+.++. .........+...+.+++|+|++++|++++.||.|++|++.....
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 998864 233333333445789999999999999999999999999885533
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-29 Score=280.03 Aligned_cols=290 Identities=16% Similarity=0.148 Sum_probs=238.6
Q ss_pred ecCCCccEEEEEECCC---CCEEEEEECCCEEEEEEeeC-CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcE
Q 001367 392 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1091)
+.+|...|++++|+|+ |++|++|+.||.|++||+.+ +..+ ...+.+|...|.+++|+|+++ +|++++.||.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v 110 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA 110 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence 7789999999999999 69999999999999999997 4332 235778999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..++++
T Consensus 111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 999999998776 5569999999999777788999999999999999999988887777655 555555554 466666
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCE----EEEEeCCCeEEEEECCCC---eeEEEEeCCC
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG 620 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~----l~~~s~dg~i~iwd~~~~---~~~~~~~~~~ 620 (1091)
+. ++.+.+|++............. ....+.++++.++... +++++.||.|++|++... ..+..+..+.
T Consensus 187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 65 5569999998765433322211 2345666666665554 999999999999999987 4556666553
Q ss_pred CC----------CCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccC
Q 001367 621 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSN 690 (1091)
Q Consensus 621 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~ 690 (1091)
.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------------------ 323 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF------------------ 323 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEE------------------
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEE------------------
Confidence 21 15899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccccccccccccc
Q 001367 691 EDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 691 ~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|+++.+++++.|+..+.|++.
T Consensus 324 ---s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 324 ---NHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp ---CTTSSCEEEEECCCSTTCGGGC
T ss_pred ---CCCCCeEEEEeccccccccccc
Confidence 7888999999998887777754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=289.24 Aligned_cols=274 Identities=17% Similarity=0.246 Sum_probs=238.6
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
.+|...|.+++| ++++|++|+.||.|++||+.+++... .+.+|...|.+++| +++ ++++|+.||.|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 89999999999999999999987554 67899999999999 677 8999999999999999
Q ss_pred CCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce---eeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
.+++.+..+.+|...|.+++++ +..+++++.||.|++||+.+.... ..+..+...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 248999999999999999987765 567788889999998 7889999886
Q ss_pred CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
++.|++||+.+++.+..+.+|. ..|.++.+ +++++++|+.||.|++||+.+++.+..+..+.. .|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEE
Confidence 6779999999999999999887 88999998 468999999999999999999999999887654 688888
Q ss_pred EccCCCEEEEEECCCeEEEEECCCCC---------eecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcc
Q 001367 630 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPE 700 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l 700 (1091)
| ++.++++|+.||.|++||+.++. .+..+.+|...|.++++ +++.+
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----------------------~~~~l 398 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-----------------------DEFQI 398 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-----------------------CSSCE
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-----------------------CCCEE
Confidence 8 78899999999999999987655 66777788888887765 36779
Q ss_pred ccccccccccccccccc
Q 001367 701 ISVEAENKSEVEKPLFA 717 (1091)
Q Consensus 701 ~s~~~d~~i~~w~~~~~ 717 (1091)
++++.||+|++|++...
T Consensus 399 ~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 399 VSSSHDDTILIWDFLND 415 (435)
T ss_dssp EECCSSSEEEEEC----
T ss_pred EEEeCCCEEEEEECCCC
Confidence 99999999999998743
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=279.89 Aligned_cols=285 Identities=10% Similarity=-0.000 Sum_probs=239.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
..+|...|++++|+|++++|++++.|+.|++|++.+++.......+.+|...|.+++|+|+++. +|++++.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999988633333456689999999999999872 388899999999999
Q ss_pred C-CCCceeEEecC--CCcceEEEeecccCCceEEEEEecCCeEEEEecCC---------CCceeeecCCCCcEEEEEEcC
Q 001367 472 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 539 (1091)
Q Consensus 472 ~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~s~ 539 (1091)
+ .+++. ..+.+ |...|.+++|++ +.++++++.|+.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 77888 999999999976 57999999999999999987 55555555 777899999999
Q ss_pred CCCEEEEEecCCCCceEEEEEecCC-cee--eEEEecccccccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-----
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 610 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~s~dg~i~iwd~~~~----- 610 (1091)
++ +++++. ++.|++||+.+ +.. ......+. ..+.+++|+| +++++++++.||.|++|+++..
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777765 66799999988 543 22333333 7899999999 9999999999999999999887
Q ss_pred -eeEEEEeCCCC-------CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccc-cccceeeeeccccccccc
Q 001367 611 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 681 (1091)
Q Consensus 611 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ 681 (1091)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+..| ...|.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~---------- 301 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA---------- 301 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE----------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec----------
Confidence 77777776643 337899999999999999999999999999999999888888 88887765
Q ss_pred cccCCcccCCCCCCCCCcccccccccc-cccccc
Q 001367 682 GIANGSVSNEDPKEDVKPEISVEAENK-SEVEKP 714 (1091)
Q Consensus 682 ~~~~g~~~~~~~s~~~~~l~s~~~d~~-i~~w~~ 714 (1091)
++++.+++++.|++ .+.|..
T Consensus 302 -------------~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 302 -------------CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp -------------ECSSEEEEEEECTHHHHCSSS
T ss_pred -------------CCCCeEEEEecCCcccccccc
Confidence 45677888999988 766664
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=281.09 Aligned_cols=295 Identities=10% Similarity=0.110 Sum_probs=221.8
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCccc-ceeEEEeccccCeeEEEEcC--CCCceEEEEeeCCCcE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI 467 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i 467 (1091)
++.+|...|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| |++ +|++++.||.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47899999999999999999999999999999999976432 33446779999999999999 588 89999999999
Q ss_pred EEEeCCCC---------ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec------------
Q 001367 468 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------------ 526 (1091)
Q Consensus 468 ~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------ 526 (1091)
++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+++.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 557888999999999999765337899999999999999998876544322
Q ss_pred -CCCCcEEEEEEcCC---CCEEEEEecCCCCceEEEEEecCCcee--eEEEecccccccceEEEEEcCCC----CEEEEE
Q 001367 527 -APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA 596 (1091)
Q Consensus 527 -~~~~~i~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~ 596 (1091)
.+...+.+++|+|+ +..+++++. ++.+.+|+...+.. +..+.+|. ..|.+++|+|++ ++++++
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence 45668999999997 889998876 66687787777665 55566665 899999999998 799999
Q ss_pred eCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE----ECCCeEEEEECCCCCeecccccccccceeeee
Q 001367 597 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI----ANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 597 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
+.||.|++||+.++.......... ........++....++.+ .....+.+|+......+..+.+|...|++++|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEESL--TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp ETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred cCCCeEEEEeCCCCcCccccCCcc--cceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 999999999998765543332221 122333333333333333 23445566666666777888899999999999
Q ss_pred ccccccccccccCCcccCCCCCCCCCccccccccccccccccccc
Q 001367 673 NPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFA 717 (1091)
Q Consensus 673 ~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~ 717 (1091)
+|+++++++++.|+.|++|++...
T Consensus 315 ---------------------s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 315 ---------------------NLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ---------------------CSSSCCEEEEETTSCEEEEEECTT
T ss_pred ---------------------cCCCCEEEEecCCCcEEEEecCcC
Confidence 788899999999999999998743
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-28 Score=281.36 Aligned_cols=299 Identities=12% Similarity=0.014 Sum_probs=233.2
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC---ceeeeceeEEecccc-----------------------------
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKVWDIGAC----------------------------- 383 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~---~~~~~~~~~~~~~~~----------------------------- 383 (1091)
++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 6 p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 6 PLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC------------------------------
T ss_pred cEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhcccccccccccccccc
Confidence 899999999999 55555 46899999999998 4432 221100
Q ss_pred -----------ccceeeeeecCCCccEEEEEECCCCCEE-EEEECCCEEEEEEee--CCcccceeEEEeccccCeeEEEE
Q 001367 384 -----------SMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAF 449 (1091)
Q Consensus 384 -----------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~ 449 (1091)
..........+|...|.+++|+|++++| |+|+.|+.|+|||+. +++.+..+. ...|...|.+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISI 157 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEE
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEE
Confidence 0000111133577789999999999996 889999999999999 776655321 1357789999999
Q ss_pred cCCCCceEEEEeeCCCcEEEEeCCCCceeE----EecCCCcceEEEeeccc-CCceEEEEEecCCeEEEEecCCCCceee
Q 001367 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD 524 (1091)
Q Consensus 450 s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 524 (1091)
+|+++ +|++++.|+.|++|++.+++... .+.+|...|.+++|++. ..+.+|++++.|+.|++||+.+......
T Consensus 158 sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 158 AEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK 235 (450)
T ss_dssp CTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred cCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence 99999 89999999999999998887554 77889999999999764 2278999999999999999998887776
Q ss_pred -ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc----------------------ccccce
Q 001367 525 -YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSV 581 (1091)
Q Consensus 525 -~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v 581 (1091)
...|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. .....+
T Consensus 236 ~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 236 WLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp ECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred eecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 55788999999999 9999999985 6789999999999888886431 123568
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEEC--CCC---eeEEEEeCCCCCCCCceEEEccCCCEEEEEEC------CCeEEEE
Q 001367 582 SVVHFDTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKIL 649 (1091)
Q Consensus 582 ~~v~~~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw 649 (1091)
..++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..+.+++|+|++.++++++. +..|.+|
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence 9999999999999998 8999999999 555 666777765 35899999996433333332 4457888
Q ss_pred ECC
Q 001367 650 ETP 652 (1091)
Q Consensus 650 d~~ 652 (1091)
.+.
T Consensus 388 ~~~ 390 (450)
T 2vdu_B 388 EYN 390 (450)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-27 Score=269.08 Aligned_cols=281 Identities=11% Similarity=0.101 Sum_probs=228.3
Q ss_pred ceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE-EEEECCCEEEEEEe
Q 001367 347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAY 425 (1091)
Q Consensus 347 ~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~ 425 (1091)
++++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35889999999999999999987754 4445 458999999999987 56668999999999
Q ss_pred eCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEE-EE
Q 001367 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FS 504 (1091)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s 504 (1091)
.+++.+. .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++ ++..+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence 9887554 444444 8999999999994 3456667899999999999998888754 4678888854 55655 78
Q ss_pred EecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEE
Q 001367 505 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV 584 (1091)
Q Consensus 505 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v 584 (1091)
++.++.|++||+.+++....+..+ ..+.+++|+|+++++++.+. .++.|++||+.+++.+..+..+ ..+.++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~ 205 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGI 205 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccce
Confidence 888999999999988777766654 45689999999998865442 2677999999999888777643 478999
Q ss_pred EEcCCCCEEEEEe---CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEE-EEEECCCeEEEEECCCCCeeccc
Q 001367 585 HFDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAA 660 (1091)
Q Consensus 585 ~~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 660 (1091)
+|+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 9999999999987 68999999999999988887654 36889999999987 56678999999999998887776
Q ss_pred cccccc
Q 001367 661 GVLSDN 666 (1091)
Q Consensus 661 ~~~~~~ 666 (1091)
..+..+
T Consensus 283 ~~~~~~ 288 (391)
T 1l0q_A 283 AVGKNP 288 (391)
T ss_dssp ECSSSE
T ss_pred ECCcCC
Confidence 655443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-27 Score=248.30 Aligned_cols=293 Identities=14% Similarity=0.126 Sum_probs=206.6
Q ss_pred eeEEEEc-CCCCceEEEEeeCCCcEEEEeCCCC---ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC
Q 001367 444 VNDLAFS-APCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1091)
Q Consensus 444 v~~~~~s-~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 519 (1091)
+.++-|- +..+.+.+++++ ...|++|+..++ ++++++.+|..+|..+++.|+.-+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5566663 455565677777 568999999999 8999999999999999997654332222211
Q ss_pred CceeeecCCCCcEEEEEEcCC----CCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE
Q 001367 520 GARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 520 ~~~~~~~~~~~~i~~~~~s~d----~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 595 (1091)
..+...|.+++++|| ++.+++++. .+.+|++. +++.+.+
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-------------------------~g~lv~s 150 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-------------------------KRRLVSS 150 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-------------------------TTEEEEE
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-------------------------CCcEEEe
Confidence 123457889999999 888888653 25566543 3333333
Q ss_pred Ee--CCCeEEEEEC-CCCeeEEEEeCCCCCCCCceEEEcc---CCCEEEEEECCCeEEEEECCCCCeeccccccccccee
Q 001367 596 AG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1091)
Q Consensus 596 ~s--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1091)
++ .|+.|++|++ .+|+.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.+++.+..+.++..
T Consensus 151 s~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~---- 224 (356)
T 2w18_A 151 SGTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS---- 224 (356)
T ss_dssp ESSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----
T ss_pred cccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc----
Confidence 22 4778888887 44777777776655 678899999 789999999999999999999988877654322
Q ss_pred eeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE
Q 001367 670 LSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 670 ~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
+...+.+++|+|+|+.++
T Consensus 225 --------------------------------------------------------------~v~~v~~vafSpdG~~lv 242 (356)
T 2w18_A 225 --------------------------------------------------------------YQASVCHKAYSEMGLLFI 242 (356)
T ss_dssp ----------------------------------------------------------------CCCEEEEEEETTEEEE
T ss_pred --------------------------------------------------------------ceeeeEEEEECCCCCEEE
Confidence 112466778999998777
Q ss_pred EeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEE
Q 001367 750 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYI 828 (1091)
Q Consensus 750 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd 828 (1091)
+++.+.. +| .+++++ |++|++||
T Consensus 243 s~s~~~~--~w------------------------------------------------------~laSGs~D~tIklWd 266 (356)
T 2w18_A 243 VLSHPCA--KE------------------------------------------------------SESLRSPVFQLIVIN 266 (356)
T ss_dssp EEC--------------------------------------------------------------------CCEEEEEEE
T ss_pred EeccCCC--cc------------------------------------------------------eeeccCCCcEEEEEE
Confidence 7664311 11 345665 78899999
Q ss_pred ccCceeEEEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeE-EEEECCCCCEEEE
Q 001367 829 VMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVS 902 (1091)
Q Consensus 829 ~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~las 902 (1091)
..+++.+..+ .+|.....+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|+|
T Consensus 267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp TTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred CCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence 9999887665 345545443333 367899999999999999999999999999988765 5899999999999
Q ss_pred EeCCCcEEEEEc
Q 001367 903 SGGDAQIFVWDV 914 (1091)
Q Consensus 903 ~s~Dg~i~vwd~ 914 (1091)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999996
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=272.97 Aligned_cols=283 Identities=13% Similarity=0.119 Sum_probs=215.4
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
.++++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++.+.. .+...+..++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~ 67 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRML 67 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEEC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEc
Confidence 4456689999999999999998 678888765 78999988765542 122258889999
Q ss_pred CCCCEEE-EEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecC
Q 001367 406 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1091)
Q Consensus 406 pdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 483 (1091)
+++++++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc
Confidence 9998885 56778999999999987655 343 66789999999864 3333 3789999999988 77766654
Q ss_pred CCcceEEEeecccCCceEEEE--EecCCeEEEEecCCCC----------------ceeeecCCCCcEEEEEEcCCCCEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
+...+++++ .+++. ++.||.|++||+.+.. ....+..|...|.+++|+|+|++|+
T Consensus 139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 333444543 34555 6899999999998765 2567888999999999999999999
Q ss_pred EEecCCCCceE-EEEEecCCceeeEEEe-c-ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEE--E-----
Q 001367 546 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T----- 615 (1091)
Q Consensus 546 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~----- 615 (1091)
+++. ++. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+.... .
T Consensus 212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 9986 776 9999999999999998 5 55 899999999999999999999999999997653211 1
Q ss_pred -------------EeCC-CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 616 -------------IDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 616 -------------~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
+... ........++|+++++++++++.||.+++|++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0011 11122467899999999999999999999987643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=308.18 Aligned_cols=260 Identities=13% Similarity=0.153 Sum_probs=211.9
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
..++.+|.+.|++++|+|+|+ ++++|+.||+|+|||+.++..... ..+.+|...|++++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH 63 (753)
T ss_dssp ------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred eeecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence 457899999999999999998 679999999999999985432211 12778999999999999
Q ss_pred C--CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEEEeCCCCc--eeEE
Q 001367 407 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTYS 480 (1091)
Q Consensus 407 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~ 480 (1091)
+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ ++ ++++++.||.|++||+.++. ....
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence 8 99999999999999999998752 233367789999999999999 88 89999999999999998873 4456
Q ss_pred ecCCCcceEEEeecccC-----------CceEEEEEecCCeEEEEecCCCCc----eeeecCCCCcEEEEEEcCC---CC
Q 001367 481 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN---GR 542 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d---~~ 542 (1091)
+.+|...|.+++|++.. ++.++++++.||.|++||++.... ...+..|...|.+++|+|+ ++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 77899999999997642 568999999999999999988743 3467788999999999999 89
Q ss_pred EEEEEecCCCCceEEEEEecCCceee--EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001367 543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1091)
++++++. ++.|++||+.++... ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus 221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999986 667999999886421 1112222234789999999999999999999999999998643
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=262.55 Aligned_cols=328 Identities=11% Similarity=0.118 Sum_probs=251.1
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEE-EEEecCCeEEEEecCCCCceeeecCCCCcEEEE
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1091)
++++++.|+.|++||+.+++.+..+..|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 788999999999999999999999887754 78898854 56655 677799999999999888777776555 89999
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeEE
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 614 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~ 614 (1091)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC----CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999877653 25679999999999888877544 68999999999988 567789999999999999988
Q ss_pred EEeCCCCCCCCceEEEccCCCEE-EEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCC
Q 001367 615 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDP 693 (1091)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~ 693 (1091)
.+..+. .+..++|+|+++++ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 887654 36899999999887 566778999999987542211100
Q ss_pred CCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccce
Q 001367 694 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 773 (1091)
Q Consensus 694 s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 773 (1091)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe----CCeEEEEEccCceeEEEecCCCCCeEEEE
Q 001367 774 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLA 849 (1091)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 849 (1091)
+...+.+++|+|+|+++++++ ++.|++||+.+++.+..+..+. .+.+++
T Consensus 198 --------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 250 (391)
T 1l0q_A 198 --------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIA 250 (391)
T ss_dssp --------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEE
T ss_pred --------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEE
Confidence 122345566677776666654 5788999998888888887654 578999
Q ss_pred EcCCCCcEE-EEEeCCCeEEEEeccCcceeeeeccccCCeE---EEEECC------------CC----------CEEEEE
Q 001367 850 FNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLVFSD------------AL----------NILVSS 903 (1091)
Q Consensus 850 ~s~~~~~~l-a~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~---~l~~sp------------dg----------~~las~ 903 (1091)
|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.| +. ..+.+.
T Consensus 251 ~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~ 329 (391)
T 1l0q_A 251 VTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDL 329 (391)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEEC
T ss_pred Ecc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeC
Confidence 999 67666 6778899999999999998888877655421 123222 11 235666
Q ss_pred eCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 904 GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 904 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
+.|..+++|++..+... .. .-....|+++|.+.+.
T Consensus 330 ~~~~~~~~W~~~~g~~~------~~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 330 SKDATEWKWDFGDGSSS------KK--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CBSCSEEEEECSSSCEE------CS--------SSCEECCSSCEEEEEE
T ss_pred CCCceEEEEECCCCccc------Cc--------CCCeEEeCCCceEEEE
Confidence 77889999999876521 00 1235689999998876
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=277.79 Aligned_cols=286 Identities=13% Similarity=0.145 Sum_probs=232.7
Q ss_pred ccEEEEEECCCCCEEE-EEECCCEEEEEEeeCCcc-cceeEEEeccccCeeEEEEcC-CCCceEEEEeeCCCcEEEEeCC
Q 001367 397 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV 473 (1091)
Q Consensus 397 ~~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~ 473 (1091)
.....++++|+...++ +++.||.|+||++..... ......+.+|.+.|.+++|+| +++ +|++++.||.|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3445688999876554 578899999999965432 233335779999999999999 788 89999999999999999
Q ss_pred CC-------ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee--cCCCCcEEEEEEcCCCCEE
Q 001367 474 TG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRL 544 (1091)
Q Consensus 474 ~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~d~~~l 544 (1091)
++ +.+..+.+|...|.+++|++.. ..+|++++.||.|++||+++.+....+ ..+...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 88 6788899999999999996542 259999999999999999999888888 7889999999999999999
Q ss_pred EEEecCCCCceEEEEEecCCceeeEEE-ecccccccceEEEEEcCCCCEEEEE---eCCCeEEEEECCCCee-EEEEeCC
Q 001367 545 FSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDAG 619 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~~ 619 (1091)
++++. ++.|++||+.+++.+..+ .+|. ...+.++.|+|++.++++| +.|+.|++||+.+++. +......
T Consensus 192 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 192 CTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp EEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred EEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 99986 677999999999998888 5666 2348999999999999998 7999999999998664 3333322
Q ss_pred CCCCCCceEEEccCCCEEEEEE-CCCeEEEEECCCCCe-eccccc--ccccceeeeeccccccccccccCCcccCCCCCC
Q 001367 620 GGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKE 695 (1091)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 695 (1091)
+...+.+++|+|+++++++++ .||.|++|++.+++. +..+.. +...+.+++| +|
T Consensus 266 -~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~---------------------sp 323 (402)
T 2aq5_A 266 -TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGY---------------------MP 323 (402)
T ss_dssp -CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEE---------------------CC
T ss_pred -CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEE---------------------ec
Confidence 224689999999999997554 699999999998874 444444 4588899998 66
Q ss_pred CCCccccccccccccccccc
Q 001367 696 DVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 696 ~~~~l~s~~~d~~i~~w~~~ 715 (1091)
++..++++ ++.+++|++.
T Consensus 324 ~~~~~~s~--~~~~~~~~l~ 341 (402)
T 2aq5_A 324 KRGLEVNK--CEIARFYKLH 341 (402)
T ss_dssp GGGSCGGG--TEEEEEEEEE
T ss_pred ccccceec--ceeEEEEEcC
Confidence 67766653 4689999976
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=249.96 Aligned_cols=270 Identities=11% Similarity=0.072 Sum_probs=199.8
Q ss_pred EEEEEECCCeEEEEECCCC---CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 636 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
.+++++. ..|++|+...+ +.+.+..++..+|..+.+.| |..-++.-.- |
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------------------~~~~~~~~~~-~----- 107 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVP---------------------DVYNLVCVAL-G----- 107 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCT---------------------TCCSCEEEEE-C-----
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcC---------------------cccceeeeee-c-----
Confidence 4555555 79999999998 78888999999999998854 3332321111 0
Q ss_pred cccccCCcccceeecCCccccccEEEEEEecC----CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCC
Q 001367 713 KPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 788 (1091)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1091)
..+...|.+++++|| ++.++.++.+ +.+|++
T Consensus 108 -----------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l-------------------------- 142 (356)
T 2w18_A 108 -----------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL-------------------------- 142 (356)
T ss_dssp -----------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE--------------------------
T ss_pred -----------------cccccceEEEEECCCccccccEEEeCCCe--EEEEec--------------------------
Confidence 125678999999999 8888886643 555542
Q ss_pred ceeeecCCCCCCCCCeeEEEecCCCCEEEEEe---CCeEEEEEc-cCceeEEEecCCCCCeEEEEEcC--CCCcEEEEEe
Q 001367 789 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIGM 862 (1091)
Q Consensus 789 ~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~s~--~~~~~la~g~ 862 (1091)
++|+++.++. |+.|++|++ .+|+.+..+..|...++.++|++ .++.+||+|+
T Consensus 143 ----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 143 ----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp ----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred ----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence 3555666654 788888888 45777777778888888888887 4678999999
Q ss_pred CCCeEEEEeccCcceeeeecccc---CCeEEEEECCCCCEE------------EEEeCCCcEEEEEcCCCceeeeeeeec
Q 001367 863 DDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQT 927 (1091)
Q Consensus 863 ~dg~i~iwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~l------------as~s~Dg~i~vwd~~~~~~~~~~~~~~ 927 (1091)
.|++|+|||+.+|+++.++.+|. ..+.+++|||||+++ ++|+.|++|++||..+++......+..
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~ 280 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL 280 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence 99999999999999999998754 367788999999886 668899999999999977554333333
Q ss_pred cCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcceeeeeecCCccCE-EEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 928 PDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPI-SQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 928 ~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v-~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
+.+|.. .+. ..+.++.++|++ .|++|+|||+.+++++.. +.+|...+ ..++|||||++|++|+.|++|+|||
T Consensus 281 p~Gh~~---~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 281 PPGQAG---RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp CTTCCC---CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEE-ECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred cCCCcc---eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEE-ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 456543 333 333448888884 799999999999999988 45676654 4689999999999999999999998
Q ss_pred C
Q 001367 1006 A 1006 (1091)
Q Consensus 1006 ~ 1006 (1091)
+
T Consensus 355 ~ 355 (356)
T 2w18_A 355 Y 355 (356)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=301.74 Aligned_cols=254 Identities=17% Similarity=0.299 Sum_probs=214.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~i 469 (1091)
+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++.. .....+.+|.++|++++|+|+ ++ +|++|+.||.|++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~v 81 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 81 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEEE
Confidence 778999999999999999999999999999999985432 334468899999999999988 77 8999999999999
Q ss_pred EeCCCCc--eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCC--ceeeecCCCCcEEEEEEcC------
Q 001367 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 539 (1091)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 539 (1091)
||+.+++ .+..+.+|...|.+++|++..++.++++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 77888899999999999776447899999999999999998873 3446677888999999999
Q ss_pred -------CCCEEEEEecCCCCceEEEEEecCCc----eeeEEEecccccccceEEEEEcCC---CCEEEEEeCCCeEEEE
Q 001367 540 -------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 605 (1091)
Q Consensus 540 -------d~~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~s~dg~i~iw 605 (1091)
++..+++++. ++.|++||+.++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 162 ~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp -----CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred cccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 5899999986 566999999877 5556666666 89999999999 8999999999999999
Q ss_pred ECCCCeeE---EEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 606 DMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 606 d~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
|+.++... .......+...|.+++|+|+++++++++.||.|++|++..+.
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99886421 112222334578999999999999999999999999998653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-26 Score=263.57 Aligned_cols=355 Identities=14% Similarity=0.091 Sum_probs=258.1
Q ss_pred CCccEEEEEECCCCCEEEEEECC-CEEEEEEeeCCcccceeEEEeccccCeeEEE---EcCCCCceEEE-----------
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVI----------- 459 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~---~s~d~~~~~l~----------- 459 (1091)
....|..+.++|....++..... ...+++... ....+..++ |+|+++.++++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMD-------------KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR 92 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEEE-------------TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeecc-------------cCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence 44567778888865444443211 112222211 223355566 67766632222
Q ss_pred -EeeCCC--cEEEEeCCCC--ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-----eecCCC
Q 001367 460 -TCGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG 529 (1091)
Q Consensus 460 -s~~~d~--~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~ 529 (1091)
+++.++ .|..||..++ +.+..+..+. .+.+++|++ ++.++++++.++.|++||+.+++... .+..+.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 223344 4555555445 5556665544 455788865 66788888899999999999887766 344677
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN 608 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~ 608 (1091)
..+.+++|+++++.+++++. ++.|++||+.+++.+..+..+. ..+.+++|+|+++.+++++ .++.|++||+.
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK 242 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence 78999999999999988875 6779999999999988888666 7899999999999886654 79999999999
Q ss_pred CCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE--------CCCeEEEEECCCCCeecccccccccceeeeecccccccc
Q 001367 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1091)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1091)
+++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+.+++.....
T Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------------------- 299 (433)
T 3bws_A 243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------------------- 299 (433)
T ss_dssp TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------
T ss_pred CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------
Confidence 999888876543 378999999999999887 3667777776543211100
Q ss_pred ccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEe
Q 001367 681 AGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 760 (1091)
Q Consensus 681 ~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw 760 (1091)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEE-e-CCeEEEEEccCceeEEEe
Q 001367 761 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILTI 838 (1091)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-dg~i~iwd~~~~~~~~~~ 838 (1091)
.+...+.+++|+|+++.++++ + ++.|++||+.+++.+..+
T Consensus 300 --------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 300 --------------------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp --------------------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred --------------------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe
Confidence 012234567777777655444 3 688999999888888777
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeC---------------CCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEE
Q 001367 839 MPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 903 (1091)
Q Consensus 839 ~~~~~~i~~l~~s~~~~~~la~g~~---------------dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 903 (1091)
. +...+.+++|+| ++++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|||++|+++
T Consensus 342 ~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 342 P-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp E-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEE
T ss_pred c-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEE
Confidence 6 667899999999 8888887776 579999999999988888764 579999999999999988
Q ss_pred eC-CCcEEEEEcCC
Q 001367 904 GG-DAQIFVWDVDG 916 (1091)
Q Consensus 904 s~-Dg~i~vwd~~~ 916 (1091)
+. |+.|++|+++.
T Consensus 419 ~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 419 DFLDHQIRVYRRDG 432 (433)
T ss_dssp ETTTTEEEEEEETT
T ss_pred ECCCCeEEEEEecC
Confidence 75 99999999874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=274.51 Aligned_cols=265 Identities=15% Similarity=0.223 Sum_probs=213.0
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
..+.+|.+.|++++|+|++..++|+|+.||.|+|||+.+...... ..........+.+|...|.+++|+|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~~ 192 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNPN 192 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECTT
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCCC
Confidence 455789999999999998555889999999999999976211000 00000011126789999999999999
Q ss_pred CC-EEEEEECCCEEEEEEeeCCccc----ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC---ceeE
Q 001367 408 GS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTY 479 (1091)
Q Consensus 408 g~-~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~ 479 (1091)
+. +|++|+.||.|++|++.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||+.++ +.+.
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPSH 271 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCSE
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCccee
Confidence 98 9999999999999999874331 223457789999999999995443 8999999999999999987 5778
Q ss_pred EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC-CCceeeecCCCCcEEEEEEcCCCC-EEEEEecCCCCceEE
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFL 557 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i 557 (1091)
.+..|...|++++|++.. ..++++++.||.|++||++. ......+..|...|.+++|+|+++ .+++++. ++.|
T Consensus 272 ~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~i 346 (430)
T 2xyi_A 272 TVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRRL 346 (430)
T ss_dssp EEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSCC
T ss_pred EeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCcE
Confidence 888999999999997642 23799999999999999998 455677888999999999999996 5777765 5679
Q ss_pred EEEecCC--------------ceeeEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 001367 558 VEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 558 ~iwd~~~--------------~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~ 610 (1091)
++||+.. .+.+..+.+|. ..|.+++|+|+++ .+++++.||.|++|++...
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999987 24555555655 8899999999999 8889999999999998754
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-27 Score=269.58 Aligned_cols=294 Identities=10% Similarity=0.070 Sum_probs=239.1
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..+..+..+. .+.+++|+|+++ ++++++.++.|++||+.+++.+.... ...+.+|...|.+++|
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~~~~v~~~~~ 177 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKKKLGFVETISI 177 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHTTCCEEEEEEE
T ss_pred eEEEEEcCCC-CceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccccCCceeEEEE
Confidence 3445555554 677999999665 88999999999999999998764211 1125679999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
+|+++++++++.|+.|++||+.+++... .+..|...+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 253 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIRKTDKI 253 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEEEecCC
Confidence 9999999999999999999999876554 56688999999999999994 3456668999999999999998888754
Q ss_pred CcceEEEeecccCCceEEEEEe--------cCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 485 GAPVYSLCPHAKENIHFIFSIS--------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
..+.+++++ +++.++++++ .||.|++||+.+++..... .+...+.+++|+|+++.+++.+. .++.
T Consensus 254 -~~~~~~~~~--~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~---~~~~ 326 (433)
T 3bws_A 254 -GLPRGLLLS--KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM---CCSK 326 (433)
T ss_dssp -SEEEEEEEC--TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET---TTTE
T ss_pred -CCceEEEEc--CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec---CCCE
Confidence 458888885 4667888877 4889999999887655544 23447889999999987766542 2678
Q ss_pred EEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC---------------CCeEEEEECCCCeeEEEEeCCCC
Q 001367 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------------DHVIKIWDMNKVQLLTTIDAGGG 621 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~---------------dg~i~iwd~~~~~~~~~~~~~~~ 621 (1091)
|++||+.+++.+..+.. . ..+.+++|+|+++++++++. ||.|++||+.+++.+..+..+.
T Consensus 327 v~v~d~~~~~~~~~~~~-~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~- 401 (433)
T 3bws_A 327 IEVYDLKEKKVQKSIPV-F---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN- 401 (433)
T ss_dssp EEEEETTTTEEEEEEEC-S---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-
T ss_pred EEEEECCCCcEEEEecC-C---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-
Confidence 99999999988877763 3 57899999999999998876 5799999999999998887643
Q ss_pred CCCCceEEEccCCCEEEEEEC-CCeEEEEECC
Q 001367 622 LPENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1091)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~ 652 (1091)
.+..++|+|++++|++++. |+.|++|++.
T Consensus 402 --~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 402 --QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp --SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred --CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 4789999999999998875 9999999976
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-27 Score=261.86 Aligned_cols=295 Identities=13% Similarity=0.119 Sum_probs=211.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
..+|...|.+++|+|||++||+|+.++ ++||++.+++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 467999999999999999999998776 7899998764332 1 22235888899998884 446788889999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC-CceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
+.+++++..+. +...|.++++++ + .++++ .++.|++||+.+. +....+.. +...+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 99999999887 667899999853 3 34433 5889999999887 54444433 444566777 66776522
Q ss_pred CCCceEEEEEecCCce----------------eeEEEecccccccceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeeE
Q 001367 551 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL 613 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~ 613 (1091)
..++.|++||+.++. .+..+.+|. ..|.+++|+|++++|++++.|++ |++||+.+++.+
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 226679999999865 266777777 89999999999999999999998 999999999999
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeec--cccc-----ccccceee---eeccccccccccc
Q 001367 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAGV-----LSDNLRKL---SVNPISTVTGAGI 683 (1091)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~-----~~~~v~~~---~~~~~~~~~~~~~ 683 (1091)
..+....+...|.+++|+|++++|++++.|++|++||+....... .+.. .....+.+ .+.+..
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 304 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK------- 304 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT-------
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC-------
Confidence 998732123479999999999999999999999999998653211 1111 00011110 010000
Q ss_pred cCCcccCCCCCCCCCccccccccccccccccccc
Q 001367 684 ANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFA 717 (1091)
Q Consensus 684 ~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~ 717 (1091)
.........+++++.+++++.||.+++|++...
T Consensus 305 -~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 305 -HVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp -TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred -CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 000011122888999999999999999987643
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=263.40 Aligned_cols=198 Identities=15% Similarity=0.098 Sum_probs=159.1
Q ss_pred CCCCeeEEEecC--CCCEEEEEe-CCeEEEEEccCceeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 800 SQEAVPCFALSK--NDAYLFSAS-GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 800 ~~~~v~~l~~s~--dg~~la~~~-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
|...|.+++++| +++++++++ ||.|++||+.+++....... +...+++++|+| ++.+|++|+.||.|++||+.++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence 667899999999 999999988 89999999999998777644 455899999999 8999999999999999999999
Q ss_pred cee-eeecc-ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCc--eEEEEcCCCCEEE
Q 001367 876 EVI-SKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE--THIQFHKDQTRFL 951 (1091)
Q Consensus 876 ~~~-~~l~~-h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~fs~dg~~la 951 (1091)
+.+ ..+.+ |.++|++++|+|+|.+|++++ |+.|++||+.+++... .+.....+.. .+ .+++|+|+|++|+
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYPTYTIPEF---KTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eecccccccc---cccceEEEECCCCCEEE
Confidence 887 78888 999999999999999999999 4599999999865321 1222111211 23 4699999999999
Q ss_pred EE-e-cCeEEEEEcCCcceeeeeecCCccCEEEEEEee---CCCEEEEEEcCCcEEEEeCCCC
Q 001367 952 LV-H-ETHLAIYEAEELTCLKQWFPISSVPISQATFSC---DCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 952 ~~-~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~---dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
++ . ++.+++|++.+....... .++..++|++ +++.+++++.||.+.++-....
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 94 4 899999999766544332 4678889998 8999999999999998865443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=266.46 Aligned_cols=254 Identities=16% Similarity=0.312 Sum_probs=212.9
Q ss_pred eeecCCCccEEEEEECCC-CCEEEEEECCCEEEEEEeeCC-------cccceeEEEeccccCeeEEEEcCCCCceEEEEe
Q 001367 390 ALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461 (1091)
Q Consensus 390 ~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~ 461 (1091)
....+|.+.|++++|+|+ +.+||+++.+|.|++|++.+. ........+.+|...|.+++|+|++.. +|+++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEE
Confidence 345679999999999997 789999999999999999862 112344478899999999999999876 69999
Q ss_pred eCCCcEEEEeCCCCce-------eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC---CceeeecCCCCc
Q 001367 462 GDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLG 531 (1091)
Q Consensus 462 ~~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~ 531 (1091)
+.||.|++||+.++.. ...+.+|...|.+++|++. ++.++++++.||.|++||+++. .....+..+...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 9999999999987432 4667789999999999764 4569999999999999999987 456677788899
Q ss_pred EEEEEEcCCCC-EEEEEecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECC
Q 001367 532 CTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 532 i~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~ 608 (1091)
+.+++|+|++. .+++++. ++.|++||+++ +..+..+..|. ..|.+++|+|+++ .+++++.|+.|++||+.
T Consensus 280 v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp EEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred eEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999998 5667765 67799999997 56778888777 8999999999985 58889999999999998
Q ss_pred C--------------CeeEEEEeCCCCCCCCceEEEccCCC-EEEEEECCCeEEEEECCCC
Q 001367 609 K--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1091)
Q Consensus 609 ~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~ 654 (1091)
. .+.+.....+. ..|.+++|+|+++ ++++++.||.|++|++...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGHT--AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCCS--SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCccccCccccccCCcceEEEcCCCC--CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 7 24555554443 4699999999999 9999999999999998744
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-27 Score=270.44 Aligned_cols=265 Identities=15% Similarity=0.091 Sum_probs=219.1
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEe--------------------------------------
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------------------------------------- 438 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------- 438 (1091)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999977666 57789999999988222222222
Q ss_pred ----------------ccccCeeEEEEcCCCCceE-EEEeeCCCcEEEEeCC--CCceeEEec--CCCcceEEEeecccC
Q 001367 439 ----------------AHVGNVNDLAFSAPCKQIS-VITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKE 497 (1091)
Q Consensus 439 ----------------~h~~~v~~~~~s~d~~~~~-l~s~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~ 497 (1091)
+|.+.|.+++|+|+++ + +++++.||.|++||+. +++.+..+. .|...|.+++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-- 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-- 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--
Confidence 3444799999999999 5 4899999999999999 888888886 5678899999954
Q ss_pred CceEEEEEecCCeEEEEecCCCCcee----eecCCCCcEEEEEEcCC---CCEEEEEecCCCCceEEEEEecCCceeeEE
Q 001367 498 NIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1091)
++.+|++++.+|.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDK 235 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEE
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeee
Confidence 67899999999999999998776543 56678889999999999 999999986 56699999999988777
Q ss_pred -EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-----------------------CCCCCCc
Q 001367 571 -YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENP 626 (1091)
Q Consensus 571 -~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~ 626 (1091)
+.+|. ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....+.
T Consensus 236 ~~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 236 WLFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp ECCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 44666 899999999 9999999999999999999999988887632 1123578
Q ss_pred eEEEccCCCEEEEEE-CCCeEEEEEC--CCC---Ceecccccccccceeeeeccc
Q 001367 627 RICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 627 ~v~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
.++|+|+++++++++ .++.|++|++ .++ ..+..+..+ ..+.+++|+|.
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 999999999999999 8999999999 555 555666666 78999999653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-26 Score=266.26 Aligned_cols=343 Identities=9% Similarity=0.081 Sum_probs=257.3
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeeE
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 613 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~--~~~~~~ 613 (1091)
.++|++..++++.. ++.|.+||..+++.+..+.... .+..++|+|+++++++++.|++|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37888877777654 6789999999999999888544 3889999999999999999999999999 889988
Q ss_pred EEEeCCCCCCCCceEEEcc----CCCEEEEEEC-CCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcc
Q 001367 614 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1091)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~ 688 (1091)
..+.... .+..++|+| ||+++++++. +++|.+||..+++.+..+..+...+....+
T Consensus 216 ~~i~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~---------------- 276 (543)
T 1nir_A 216 AEIKIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY---------------- 276 (543)
T ss_dssp EEEECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE----------------
T ss_pred EEEecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc----------------
Confidence 8887533 468999999 9999999884 899999999888776655432111100000
Q ss_pred cCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE-EeecCceEEEeecCCccc
Q 001367 689 SNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHLMWRWPRNDL 767 (1091)
Q Consensus 689 ~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~-~~~~dg~i~vw~~~~~~~ 767 (1091)
.....+..+.+++++..++ +...++.+.+||+.....
T Consensus 277 ------------------------------------------~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~ 314 (543)
T 1nir_A 277 ------------------------------------------HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN 314 (543)
T ss_dssp ------------------------------------------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS
T ss_pred ------------------------------------------ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc
Confidence 0123688899999877554 555679999998754321
Q ss_pred ccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecC----C
Q 001367 768 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----P 841 (1091)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~----~ 841 (1091)
+....+ .+...+..++|+|||+++++++ +++|.+||..+++++..+.. |
T Consensus 315 ----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph 369 (543)
T 1nir_A 315 ----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 369 (543)
T ss_dssp ----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred ----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence 110011 1344577899999999887765 68999999999999988764 4
Q ss_pred CCCeEEEEEcCCCCcEEEEEe-CCCeEEEEeccC-------cceeeeeccccCCeEEEEECCCCCEEEEEe-------CC
Q 001367 842 SPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------GD 906 (1091)
Q Consensus 842 ~~~i~~l~~s~~~~~~la~g~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~las~s-------~D 906 (1091)
......+ ++|+++.+++++. .|++|.+||+.+ .+++.++.+|.+.+..++|+|||++|++++ .+
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHH
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccC
Confidence 4333333 5774577788775 689999999998 889999999999899999999999999987 27
Q ss_pred CcEEEEEcCCCcee-eeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE------ecCeEEEEEcCCcceeeeee
Q 001367 907 AQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 973 (1091)
Q Consensus 907 g~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~------~d~~i~vwd~~~~~~~~~~~ 973 (1091)
++|.|||+.+++.. ....+....+.......+..++|+|||+.+.++ .++.|.|||.++++++..+.
T Consensus 449 ~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 449 QSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp TCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 79999999997754 211111111111112368999999999999874 25899999999999987754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=264.61 Aligned_cols=270 Identities=10% Similarity=0.063 Sum_probs=211.9
Q ss_pred EEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEE
Q 001367 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1091)
Q Consensus 341 ~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i 420 (1091)
.+.+|+. ++++|+.||+|++||+.+++.+.. +. ...|.+++|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 4456776 789999999999999999987754 11 356778889998 9999999999
Q ss_pred EEEEee---------CCcccceeEEEeccccCeeEEEEcC--CCCceEEEEeeCCCcEEEEeCCCCceeEEec-CCCcce
Q 001367 421 QLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPV 488 (1091)
Q Consensus 421 ~iwd~~---------~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v 488 (1091)
++|+.. +++.++. ...+|.+.|.+++|+| +++ ++++++.||+|++||+.+++.+.... .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999765 3322221 1226778999999999 999 89999999999999999999877664 455689
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCce-eeecC-CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
.+++|++ ++.+|++|+.||.|++||+++.... ..+.. |..+|.+++|+|++.+|++++. + .|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~----~-~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD----Q-TVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES----S-BEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC----C-eEEEEEcCCCC
Confidence 9999955 7789999999999999999998887 67777 8899999999999999999973 2 69999999987
Q ss_pred eeEEEecccccccce--EEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc---CCCEEEEE
Q 001367 567 IKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVI 640 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v--~~v~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~ 640 (1091)
....+..+..+...+ .+++|+|+++++++++. |+.+++|++.+....... ..+..++|.+ +.+.++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 766655422112333 46999999999999988 999999999765433222 1356677887 88899999
Q ss_pred ECCCeEEEEECC
Q 001367 641 ANENRIKILETP 652 (1091)
Q Consensus 641 ~~dg~i~iwd~~ 652 (1091)
+.|+.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999999887533
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=268.05 Aligned_cols=276 Identities=7% Similarity=-0.025 Sum_probs=179.7
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 406 (1091)
.....|...+....+++++. ++|+|+.|++|+|||+.+++...... ...+.+|.+.|.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~ 147 (393)
T 4gq1_A 83 YSENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADV 147 (393)
T ss_dssp EECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEE
T ss_pred ccccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEccc
Confidence 34456666666677777776 78999999999999999987654311 123789999999999998
Q ss_pred -------CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 407 -------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 407 -------dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
|+++||+|+.|++|+|||+.++.... .+.+|..+|.+++|+|++.. +|++++.|++|++||+.+++...
T Consensus 148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~ 223 (393)
T 4gq1_A 148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAE 223 (393)
T ss_dssp ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---
T ss_pred cccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccc
Confidence 89999999999999999999876444 56688999999999998864 79999999999999999988776
Q ss_pred EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEc-CCCCEEEEEecCCCCceEEE
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~ 558 (1091)
....+.......++..... ..........+...+.++.|+ +|++.+++++. ++.++
T Consensus 224 ~~~~~~~~~~~~~~s~~~~-------------------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~ 280 (393)
T 4gq1_A 224 ENSQTELVKNPWLLTLNTL-------------------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWL 280 (393)
T ss_dssp -------CSCCCSEEEESG-------------------GGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEE
T ss_pred cccccCCcccceEEecccc-------------------cceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEE
Confidence 6654433322222111110 011111223456678888886 79999999876 66799
Q ss_pred EEecCCceeeEEEecccccccceEE------------------EEEcC-CC-CEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 559 EWNESEGAIKRTYQGLQLQHNSVSV------------------VHFDT-AK-DQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~------------------v~~~~-~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
+||+.++.....+..+. ..+.. ..++| .+ .++++|+.||+|++||+.+++.......
T Consensus 281 vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~ 357 (393)
T 4gq1_A 281 RWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ 357 (393)
T ss_dssp EEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred EEECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence 99998887666655443 22222 22333 23 3556688999999999999988877765
Q ss_pred CCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 358 ~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 358 LGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 544 699999999999999998766 555554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-25 Score=260.54 Aligned_cols=330 Identities=13% Similarity=0.150 Sum_probs=247.9
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC--CCCCeecccccc
Q 001367 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET--PESNSVDAAGVL 663 (1091)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~ 663 (1091)
++|++..+++++.+++|.+||..+++++..+..+.. +..++|+|||++|++++.|+.|.+||+ .+++.+..+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~---~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-- 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA---VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-- 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT---EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc---cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--
Confidence 788888888899999999999999999999875432 678999999999999999999999999 5543332221
Q ss_pred cccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEec
Q 001367 664 SDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 743 (1091)
Q Consensus 664 ~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 743 (1091)
+...+..++|+|
T Consensus 220 --------------------------------------------------------------------~g~~p~~va~sp 231 (543)
T 1nir_A 220 --------------------------------------------------------------------IGIEARSVESSK 231 (543)
T ss_dssp --------------------------------------------------------------------CCSEEEEEEECC
T ss_pred --------------------------------------------------------------------cCCCcceEEeCC
Confidence 123467889999
Q ss_pred ----CCCeEEEeec-CceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCC-------CCCCCCeeEEEecC
Q 001367 744 ----GGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD-------SNSQEAVPCFALSK 811 (1091)
Q Consensus 744 ----dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~l~~s~ 811 (1091)
||+++++++. ++++.+||....+ ++....... ......+..++++|
T Consensus 232 ~~~~dg~~l~v~~~~~~~v~v~D~~t~~----------------------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 232 FKGYEDRYTIAGAYWPPQFAIMDGETLE----------------------PKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCC----------------------EEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred CcCCCCCEEEEEEccCCeEEEEeccccc----------------------cceeecccCcccCccccccCCceEEEEECC
Confidence 9999888874 7999999864322 122211100 00233788999999
Q ss_pred CCCEEEEEe--CCeEEEEEccCceeEE--EecCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEeccCcceeeeecc---
Q 001367 812 NDAYLFSAS--GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEG--- 883 (1091)
Q Consensus 812 dg~~la~~~--dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~la~-g~~dg~i~iwd~~~~~~~~~l~~--- 883 (1091)
++..+++.. ++.|.+||+.+.+.+. .+. +...+..++|+| +++++++ +..+++|.+||+.+++++..+..
T Consensus 290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ 367 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 367 (543)
T ss_dssp SSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred CCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence 888776664 6999999998866544 343 556788899999 7776554 55688999999999998887764
Q ss_pred -ccCCeEEEEECCC-CCEEEEEe-CCCcEEEEEcCCCce--eeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe----
Q 001367 884 -HSKRVTGLVFSDA-LNILVSSG-GDAQIFVWDVDGWGI--QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH---- 954 (1091)
Q Consensus 884 -h~~~V~~l~~spd-g~~las~s-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~---- 954 (1091)
|.+....+ ++|+ |..++++. .|++|.+||+++... ...++++.+.++.. .+..++|+|||++|.++.
T Consensus 368 ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~---~~~~v~~~pdg~~l~v~~~~~~ 443 (543)
T 1nir_A 368 PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG---GSLFIKTHPKSSHLYVDTTFNP 443 (543)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS---CCCCEECCTTCCEEEECCTTCS
T ss_pred CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC---CceEEEcCCCCCcEEEecCCCC
Confidence 65544443 4677 66677775 689999999987210 01234455555443 567899999999999964
Q ss_pred ----cCeEEEEEcCCcceeeeee--------cCCccCEEEEEEeeCCCEEEEEE-----cCCcEEEEeCCCCceEEEee
Q 001367 955 ----ETHLAIYEAEELTCLKQWF--------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 955 ----d~~i~vwd~~~~~~~~~~~--------~~h~~~v~~v~fs~dg~~l~t~~-----~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
+++|.|||+.+++.....+ ..+...+..+.|+|||+.|+++. .|+.|.|||..+++++..+.
T Consensus 444 ~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 444 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 6799999999998874332 34578899999999999988763 37999999999999987776
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-27 Score=264.87 Aligned_cols=328 Identities=13% Similarity=0.092 Sum_probs=203.7
Q ss_pred CcEEEEE---cCCCceEEEEEcCCCcEEEEEcCCCCce-----eeeceeEEecccccc-----ceeeeeecCCCccEEEE
Q 001367 336 SPMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKL-----FIRNFKVWDIGACSM-----LFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 336 ~V~~v~f---spdg~~llasg~~dg~i~iWd~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~~l 402 (1091)
...++.| +|++..+++.|. ++.|.+|+....... .......|+...... .........|...+...
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN 95 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred CCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence 3445555 566655766664 688999986432211 111112222111100 00111133455555556
Q ss_pred EECCCCCEEEEEECCCEEEEEEeeCCcccce--eEEEeccccCeeEEEEcC--------CCCceEEEEeeCCCcEEEEeC
Q 001367 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~--~~~~~~h~~~v~~~~~s~--------d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
.+++++.+||+++.|++|+|||+.+++.... ...+.+|.+.|++++|+| |++ +|++++.|++|+|||+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRL 173 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEEC
Confidence 6667888999999999999999998865332 223568999999999998 777 8999999999999999
Q ss_pred CCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
.++.++..+.+|..+|.+++|+|. +..+|++++.||+|++||+.+.........+........+++
T Consensus 174 ~~~~~~~~~~~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~------------- 239 (393)
T 4gq1_A 174 TDEGPILAGYPLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL------------- 239 (393)
T ss_dssp ETTEEEEEEEECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE-------------
T ss_pred CCCceeeeecCCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec-------------
Confidence 999888888889999999999764 235899999999999999988765544332221111101100
Q ss_pred CceEEEEEecCCceeeEEEecccccccceEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC----------
Q 001367 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG---------- 621 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~---------- 621 (1091)
+...........++. ..+.++.|+ |+++.+++++.|+++++||+..++....+..+..
T Consensus 240 --------~~~~~~~~~~~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 240 --------NTLPLVNTCHSSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPN 308 (393)
T ss_dssp --------ESGGGC------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCS
T ss_pred --------ccccceeeeeccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccc
Confidence 000001111122333 678888886 8999999999999999999988776555433221
Q ss_pred ------CCCCceEEEcc--CCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCC
Q 001367 622 ------LPENPRICFNK--NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDP 693 (1091)
Q Consensus 622 ------~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~ 693 (1091)
........++| ++.++++|+.||.|++||..++........|..+|.+++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf--------------------- 367 (393)
T 4gq1_A 309 VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCW--------------------- 367 (393)
T ss_dssp EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEE---------------------
T ss_pred cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEE---------------------
Confidence 01122334444 4456777888999999999999888888889999999999
Q ss_pred CCCCCccccccccccccccc
Q 001367 694 KEDVKPEISVEAENKSEVEK 713 (1091)
Q Consensus 694 s~~~~~l~s~~~d~~i~~w~ 713 (1091)
+|||+.|++++.+| +.+|.
T Consensus 368 spdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 368 HQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp CTTSSEEEEEESSE-EEEEE
T ss_pred cCCCCEEEEEeCCC-eEEEE
Confidence 78888888887655 44444
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=251.45 Aligned_cols=307 Identities=9% Similarity=0.032 Sum_probs=239.8
Q ss_pred CCCCcEEEEEcCCCceEEEEEc----CCC----cEEEEEc--CCCCceeeeceeEEeccccccceeeeeecCCCccEEEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~----~dg----~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 402 (1091)
+...|...+|++.|..++++|+ .|| +|+|||+ .+++++.... +.+|...+..+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 123 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYA 123 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHH
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHH
Confidence 3458889999999987888886 457 8999999 9998764322 55677777777
Q ss_pred EECC--------------CCCEEEEEECC------CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee
Q 001367 403 VWSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1091)
Q Consensus 403 ~~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~ 462 (1091)
++++ .+..++.++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++
T Consensus 124 ~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s 197 (415)
T 2hqs_A 124 GHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVT 197 (415)
T ss_dssp HHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEE
T ss_pred HHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEE
Confidence 7664 26677777654 799999998543 33 5678999999999999999 788888
Q ss_pred CCC---cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEE-EEecCCe--EEEEecCCCCceeeecCCCCcEEEEE
Q 001367 463 DDK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMA 536 (1091)
Q Consensus 463 ~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1091)
.++ .|++||+.+++.. .+..|...+.+++|+| ||+.|+ +++.++. |++||+.+++. ..+..+...+.+++
T Consensus 198 ~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 198 FESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPT 273 (415)
T ss_dssp CTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEE
T ss_pred ecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceE
Confidence 775 9999999998875 5667888899999954 667676 6666654 99999987654 45666777899999
Q ss_pred EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeE
Q 001367 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLL 613 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~ 613 (1091)
|+|||++|++++.. ++...|++||+.+++.. .+..+. ..+.+++|+|+|++|++++.+ ..|++||+.+++..
T Consensus 274 ~spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 274 WFPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp ECTTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred ECCCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 99999999988742 33557999999888643 333333 578899999999999987754 58999999998774
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEEECCC---eEEEEECCCCCeecccccccccceeeeecccc
Q 001367 614 TTIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1091)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1091)
.+..+. .+..++|+|+|++|++++.++ .|++||+. +.....+..+...|.+++|+|..
T Consensus 349 -~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 349 -VLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -ECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred -EecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 333322 578999999999999988876 79999987 45567788899999999997753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=258.78 Aligned_cols=302 Identities=13% Similarity=0.091 Sum_probs=212.2
Q ss_pred CCCcEEEEEcCCCceEEEEEcC-CC-----cEEEEEcCCCCceeeeceeEEe-----cccccccee-eeeecCCCccEEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWD-----IGACSMLFK-TALVRDPGVSVNR 401 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~-dg-----~i~iWd~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~h~~~V~~ 401 (1091)
...|.+++|||||++ |++++. |+ +|.+||+.+++........... +.......+ ...+. ....|.+
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA-AMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc-cccCcce
Confidence 347999999999995 566666 87 8999999999865431100000 000000000 00000 0034889
Q ss_pred EEECCCCCEEEEEECCCEEEEEEeeCCc--ccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
++|||||++|++++. +.|++||+.++. ... .+..|...+..++|||||+ .|++++ ++.|++||+.+++...
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999999987 899999999872 222 3567888899999999999 677776 5689999999887765
Q ss_pred EecCCCcc----------------eEEEeecccCCceEEEEEecCC---------------------------------e
Q 001367 480 SFEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------K 510 (1091)
Q Consensus 480 ~~~~~~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~ 510 (1091)
....+... +..++| ++||++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 54444332 366777 55778898887765 7
Q ss_pred EEEEecCC-CCceeeec--CCCCcEEEEEEcCCCCEEEEEec-CCCCceEEEEEecCCceeeEEEeccccccc---ceEE
Q 001367 511 IKAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSV 583 (1091)
Q Consensus 511 i~iwd~~~-~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~ 583 (1091)
|.+||+.+ ++...... .+...+..++| |||++|++... ....+..|++||+.+++....+..+. .. .+..
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~ 341 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNS 341 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSC
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCc
Confidence 88999887 66554432 35567899999 99999997764 23346789999999998877776544 12 3467
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECC-CCeeEEEEeCCCCCCCCceE-EEccCCCEEEEEEC-CC--eEEEEECC
Q 001367 584 VHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP 652 (1091)
Q Consensus 584 v~~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iwd~~ 652 (1091)
++|+|||+.+++++.+|.+.+|.++ ++. ...+..+. ..+..+ .|+|+++.++..+. ++ .+++|++.
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred eEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 8999999988888899988888765 344 55554432 346666 59999998765554 44 78888765
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=237.89 Aligned_cols=306 Identities=13% Similarity=0.111 Sum_probs=224.6
Q ss_pred ccCeeEEEEcCCCCceEEEEee----CCC----cEEEEeC--CCCcee--EEecCCCcceEEEeeccc------------
Q 001367 441 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------ 496 (1091)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~------------ 496 (1091)
...+...+|++.|.. ++++|+ .|| .|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346788899999876 666775 467 8999999 899887 558889888887776531
Q ss_pred CCceEEEEEecC------CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEE
Q 001367 497 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 497 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1091)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 113456666554 7999999975 44556666778899999999999999987542 2468999999998875 4
Q ss_pred EecccccccceEEEEEcCCCCEEE-EEeCCC--eEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC-CC--
Q 001367 571 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN-- 644 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~~l~-~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg-- 644 (1091)
+..+. ..+.+++|+|||+.|+ +++.++ .|++||+.+++. ..+..+. ..+..++|+|||++|++++. ++
T Consensus 218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS--SCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC--CcccceEECCCCCEEEEEECCCCCc
Confidence 55554 6899999999999888 566555 499999998876 3443333 35789999999999988876 34
Q ss_pred eEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccce
Q 001367 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 724 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 724 (1091)
.|++||+.++.... +.
T Consensus 292 ~i~~~d~~~~~~~~-l~--------------------------------------------------------------- 307 (415)
T 2hqs_A 292 QVYKVNINGGAPQR-IT--------------------------------------------------------------- 307 (415)
T ss_dssp EEEEEETTSSCCEE-CC---------------------------------------------------------------
T ss_pred EEEEEECCCCCEEE-Ee---------------------------------------------------------------
Confidence 56666655431100 00
Q ss_pred eecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCe
Q 001367 725 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 804 (1091)
Q Consensus 725 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 804 (1091)
.+...+
T Consensus 308 --------------------------------------------------------------------------~~~~~~ 313 (415)
T 2hqs_A 308 --------------------------------------------------------------------------WEGSQN 313 (415)
T ss_dssp --------------------------------------------------------------------------CSSSEE
T ss_pred --------------------------------------------------------------------------cCCCcc
Confidence 012234
Q ss_pred eEEEecCCCCEEEEEe-C---CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEeccCcce
Q 001367 805 PCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEV 877 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg---~i~iwd~~~~~~ 877 (1091)
.+++|+|||++|++++ + ..|.+||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. +..
T Consensus 314 ~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~ 389 (415)
T 2hqs_A 314 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRF 389 (415)
T ss_dssp EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCC
T ss_pred cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCc
Confidence 4556666666666554 2 46888998887764 454443 899999999 888888888777 89999987 566
Q ss_pred eeeeccccCCeEEEEECCCCC
Q 001367 878 ISKLEGHSKRVTGLVFSDALN 898 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~spdg~ 898 (1091)
...+.+|.+.|.+++|+|.-.
T Consensus 390 ~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 390 KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEECCCSSSEEEEEEECCCCC
T ss_pred EEEeeCCCCCCcCCccccccc
Confidence 788899999999999999643
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=258.03 Aligned_cols=311 Identities=9% Similarity=0.088 Sum_probs=222.8
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc---cEEEEEECCCCCEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG 412 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~la 412 (1091)
.+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 578899999998 5566 6889999999999986543 445554 499999999999999
Q ss_pred EEECC---------CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC
Q 001367 413 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 413 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1091)
+++.+ +.+++||+.+++. +.+....+|...+..++|||||+ .|++++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99864 7889999999875 22222234555689999999999 5777764 7999999999988776655
Q ss_pred CCcce------------------EEEeecccCCceEEEEEecCC----------------------------------eE
Q 001367 484 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI 511 (1091)
Q Consensus 484 ~~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 511 (1091)
+...+ .+++| ++||+.|++++.++ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 67777 55778898887653 79
Q ss_pred EEEecCCCCceeeecCC------CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccce----
Q 001367 512 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV---- 581 (1091)
Q Consensus 512 ~iwd~~~~~~~~~~~~~------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---- 581 (1091)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+. ...+
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~ 308 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN 308 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence 99999887755555543 55788999999999987776544456789999999998777665432 1233
Q ss_pred EEEEEcCCCCEEEE--EeCCC------eEEEEE-CCCCee--EEEEeCCCCCCCCce-EEEccCCCEEEEEECC---CeE
Q 001367 582 SVVHFDTAKDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI 646 (1091)
Q Consensus 582 ~~v~~~~~~~~l~~--~s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i 646 (1091)
..++|+|||+.|+. +..++ .|++|| ..++.. ...+... . ..+.. ++|+|||+.|+..+.+ +.+
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence 37899999998775 44666 577777 444441 3333321 1 12333 6899999999877665 789
Q ss_pred EEEECCCCC--eeccccc---ccccceeeeeccccc
Q 001367 647 KILETPESN--SVDAAGV---LSDNLRKLSVNPIST 677 (1091)
Q Consensus 647 ~iwd~~~~~--~~~~~~~---~~~~v~~~~~~~~~~ 677 (1091)
++|++.... ....+.. +...+..++|+|++.
T Consensus 387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~ 422 (723)
T 1xfd_A 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMD 422 (723)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred EEEEEeCCCCCCcceecccccCCCCeEEEEECCCCC
Confidence 999986432 2333332 455567777744433
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=250.38 Aligned_cols=331 Identities=11% Similarity=0.016 Sum_probs=233.6
Q ss_pred ccCeeEEEEcCCCCceEEEEeeC-CC-----cEEEEeCCCCceeEEecCCCc------------------------ceEE
Q 001367 441 VGNVNDLAFSAPCKQISVITCGD-DK-----TIKVWDAVTGSRTYSFEGHGA------------------------PVYS 490 (1091)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~ 490 (1091)
...+.+++|||||+ +|++++. |+ .|++||+.+++....+..+.. .+.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 44689999999999 7888887 88 899999999988777765443 2777
Q ss_pred EeecccCCceEEEEEecCCeEEEEecCCCC--ceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
++| ++||++|++++. +.|++||+.++. ....+..+...+..++|||||++|++++. +.|++||+.+++..
T Consensus 114 ~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-----~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-----RNLWVIDLASGRQM 185 (741)
T ss_dssp CEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-----TEEEEEETTTTEEE
T ss_pred eEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-----CcEEEEecCCCCEE
Confidence 888 557788988886 999999998873 44455666678999999999999998863 36999999998776
Q ss_pred EEEecccc-------------cccceEEEEEcCCCCEEEEEeCCC---------------------------------eE
Q 001367 569 RTYQGLQL-------------QHNSVSVVHFDTAKDQILAAGDDH---------------------------------VI 602 (1091)
Q Consensus 569 ~~~~~~~~-------------~~~~v~~v~~~~~~~~l~~~s~dg---------------------------------~i 602 (1091)
+....+.. ....+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 55443320 001147799999999999987665 78
Q ss_pred EEEECCC-CeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC-----CCeEEEEECCCCCeecccccccccceeeeecccc
Q 001367 603 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-----ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1091)
Q Consensus 603 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1091)
++||+.+ ++.........+...+..++| |||++|+++.. +..|++||+.+++.......+.
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------ 332 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS------------ 332 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC------------
Confidence 9999988 876554332122335788999 99999987764 4567777766543221111000
Q ss_pred ccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCce
Q 001367 677 TVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 756 (1091)
Q Consensus 677 ~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~ 756 (1091)
+
T Consensus 333 -----------------------------------------------------------------------------~-- 333 (741)
T 2ecf_A 333 -----------------------------------------------------------------------------P-- 333 (741)
T ss_dssp -----------------------------------------------------------------------------S--
T ss_pred -----------------------------------------------------------------------------C--
Confidence 0
Q ss_pred EEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEcc-Ccee
Q 001367 757 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM-TFKT 834 (1091)
Q Consensus 757 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~-~~~~ 834 (1091)
.....+..++|+|||+++++++ +|.++||.+. +++
T Consensus 334 ------------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~- 370 (741)
T 2ecf_A 334 ------------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK- 370 (741)
T ss_dssp ------------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-
T ss_pred ------------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-
Confidence 0001223456777777666555 4555565554 344
Q ss_pred EEEecCCCCCeEEE-EEcCCCCcEE-EEEeCCC--eEEEEeccC-cceeeeeccccCCeEEEEECCCCCEEEEEeCC---
Q 001367 835 ILTIMPPSPTATSL-AFNPHDNNVI-AIGMDDS--TILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGD--- 906 (1091)
Q Consensus 835 ~~~~~~~~~~i~~l-~~s~~~~~~l-a~g~~dg--~i~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~las~s~D--- 906 (1091)
...+..+...+..+ +|+| +++.| ++++.++ .++||++.. +.....+.. ...+..++|||||++|+....+
T Consensus 371 ~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~ 448 (741)
T 2ecf_A 371 AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNST 448 (741)
T ss_dssp EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTE
T ss_pred eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCC
Confidence 66777777788887 5999 66655 5555565 899999875 555666765 6678999999999998876544
Q ss_pred -CcEEEEEcCCCc
Q 001367 907 -AQIFVWDVDGWG 918 (1091)
Q Consensus 907 -g~i~vwd~~~~~ 918 (1091)
..+.+|+..++.
T Consensus 449 p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 449 PPQIELFRANGEK 461 (741)
T ss_dssp EEEEEEEETTSCE
T ss_pred CCeEEEEEcCCCe
Confidence 468899986643
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-23 Score=252.34 Aligned_cols=385 Identities=11% Similarity=0.084 Sum_probs=253.3
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC---------Ce
Q 001367 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 601 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d---------g~ 601 (1091)
...+++|+|||+++++ +. ++.|++||..+++....+..+......+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997755 32 5579999999998887777655111248999999999999998764 78
Q ss_pred EEEEECCCCeeEEEEeC-CCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccccc
Q 001367 602 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1091)
Q Consensus 602 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1091)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|++.++........+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 89999999886 33332 222234788999999999999987 799999998775543322211111
Q ss_pred ccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC-ceEEE
Q 001367 681 AGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLM 759 (1091)
Q Consensus 681 ~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~v 759 (1091)
+..|-. -|-.+ ..-...+.+++|||||+.|++++.+ +.+.+
T Consensus 158 -------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 199 (723)
T 1xfd_A 158 -------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVPI 199 (723)
T ss_dssp -------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSCE
T ss_pred -------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccce
Confidence 000000 00000 0011245789999999999888765 45666
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEec
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM 839 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~ 839 (1091)
|++.... + .+...+..+.++++|.. ..+..|++||+.+++....+.
T Consensus 200 ~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 200 MELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp EEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECC
T ss_pred EEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEee
Confidence 6643210 0 12234678888888863 123579999999988766666
Q ss_pred CC------CCCeEEEEEcCCCCcEEEEEeC----CCeEEEEeccCcceeeeecc-ccCCe----EEEEECCCCCEEEE--
Q 001367 840 PP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRV----TGLVFSDALNILVS-- 902 (1091)
Q Consensus 840 ~~------~~~i~~l~~s~~~~~~la~g~~----dg~i~iwd~~~~~~~~~l~~-h~~~V----~~l~~spdg~~las-- 902 (1091)
.+ ...+..++||| ||++|++... +..|++||+.+++....+.. |.+.+ ..++|||||+.|+.
T Consensus 246 ~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 324 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR 324 (723)
T ss_dssp CCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred CCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEE
Confidence 54 55789999999 8888877653 35899999999987766544 33434 37899999998775
Q ss_pred EeCCC------cEEEEE-cCCCceeeeeeeecc-CCCcCCCCCceE-EEEcCCCCEEEE-Eec---CeEEEEEcCCcc--
Q 001367 903 SGGDA------QIFVWD-VDGWGIQTCRSLQTP-DGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT-- 967 (1091)
Q Consensus 903 ~s~Dg------~i~vwd-~~~~~~~~~~~~~~~-~~~~~~~~~i~~-l~fs~dg~~la~-~~d---~~i~vwd~~~~~-- 967 (1091)
+..++ .|.+|| ..++... +...+ .++. .+.. ++|||||+.|+. +.+ +.+++|++....
T Consensus 325 ~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~ 397 (723)
T 1xfd_A 325 AIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF 397 (723)
T ss_dssp EECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred ecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC
Confidence 45666 466677 3443200 01112 2222 2443 699999999986 444 679999986432
Q ss_pred eeeeeecC--CccCEEEEEEeeCCCEEEEEEcC-C--cEEEEeCCCCceEEEe
Q 001367 968 CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 968 ~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~d-g--~v~iwd~~~~~~~~~~ 1015 (1091)
....+... |...+..++|||||++|+..... + .+.+++..++..+..+
T Consensus 398 ~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 398 NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 23322221 56778899999999988865433 2 3445666666554443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=214.55 Aligned_cols=281 Identities=10% Similarity=0.067 Sum_probs=206.2
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC-CC
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH 418 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~ 418 (1091)
..|++++.+++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457788887889999999999999999987754 22345566 9999999998777765 88
Q ss_pred EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC-C--cEEEEeCCCCceeEEecCCCcceEEEeecc
Q 001367 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1091)
.|.+||+.+++.. ...+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+. ...+++|++
T Consensus 63 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~sp 137 (331)
T 3u4y_A 63 TLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISP 137 (331)
T ss_dssp EEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECT
T ss_pred eEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECC
Confidence 9999999998751 224555666665599999999 56655544 3 89999999999888876543 457888855
Q ss_pred cCCce-EEEEEecCCe-EEEEecCCCCcee----eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee--
Q 001367 496 KENIH-FIFSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-- 567 (1091)
Q Consensus 496 ~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-- 567 (1091)
+++ ++++...++. |.+|+++...... ...........++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 138 --dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 --NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp --TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred --CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 555 4455556688 9999998655432 22233456789999999998776653 256799999999887
Q ss_pred -eEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee--EEEEeCC----CC-CCCCceEEEccCCCEEE
Q 001367 568 -KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLLA 638 (1091)
Q Consensus 568 -~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l~ 638 (1091)
+..+... ..+..++|+|+++++++++ .++.|.+||+.+++. +..+... .. ......++|+|++++|+
T Consensus 213 ~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 213 LLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp EEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred eeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 6666543 4678899999999887765 578899999999887 4444322 11 11124589999999887
Q ss_pred EEEC-CCeEEEEECCCC
Q 001367 639 VIAN-ENRIKILETPES 654 (1091)
Q Consensus 639 ~~~~-dg~i~iwd~~~~ 654 (1091)
+++. ++.|.+|++...
T Consensus 289 v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 289 ISANISRELKVFTISGK 305 (331)
T ss_dssp EEETTTTEEEEEETTSC
T ss_pred EecCCCCcEEEEEecCC
Confidence 7665 569999999865
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-21 Score=233.11 Aligned_cols=238 Identities=9% Similarity=-0.008 Sum_probs=166.4
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCccc-ceeEEEeccc-----------------cCeeEEEEcCCCCceEEEE
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT 460 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~~~~s~d~~~~~l~s 460 (1091)
+..+.|+ |+.+++++.++ | +||+.+|+.. .. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457788 66777787888 8 9999998753 32 22332 46999999999 5 3444
Q ss_pred eeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC-----CCceeeecCCCCc----
Q 001367 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG---- 531 (1091)
Q Consensus 461 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~---- 531 (1091)
+. ++.|++||+.+++... +..+...+.+++|+ +||+.|+++ .++.|++||+.+ ++...........
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 43 5999999999887654 44566778888885 577788884 789999999988 6655443333332
Q ss_pred ----------EEEEEEcCCCCEEEEEecC-----------------------------CCCceEEEEEecCCceeeEEEe
Q 001367 532 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 532 ----------i~~~~~s~d~~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
+.+++|+|||++|++++.+ ...+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 4789999999999988632 1246789999999988655443
Q ss_pred cccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEe-CC--CCCCCCceEEEcc--CCCEEEEEEC
Q 001367 573 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AG--GGLPENPRICFNK--NGTLLAVIAN 642 (1091)
Q Consensus 573 ~~~~~~~~v~~v~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~-~~--~~~~~v~~v~~s~--~~~~l~~~~~ 642 (1091)
.. .+...+..++|+|||+++++++.++ .|++||+.+++....+. .. .....+..++|+| ||++++++..
T Consensus 253 ~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GE-PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CS-CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CC-CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 21 1236789999999999999987665 89999999983333322 11 1111246789999 9998888888
Q ss_pred CCeEEEEECC
Q 001367 643 ENRIKILETP 652 (1091)
Q Consensus 643 dg~i~iwd~~ 652 (1091)
++.+++|.+.
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 8888777654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-20 Score=207.35 Aligned_cols=276 Identities=14% Similarity=0.169 Sum_probs=193.9
Q ss_pred CceEEEEEcCCCcEEEEEcC-CCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC-CEEEEE
Q 001367 346 QHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY 423 (1091)
Q Consensus 346 g~~llasg~~dg~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d-~~i~iw 423 (1091)
+++++++++.|+.|.+||+. +++..... ...|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 34566776889999999995 34322110 12367789999999999999999886 899999
Q ss_pred Eee--CCcccceeEEEeccccCeeEEEEcCCCCceEEEE-eeCCCcEEEEeC---CCCceeEEecCCCcceEEEeecccC
Q 001367 424 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVWDA---VTGSRTYSFEGHGAPVYSLCPHAKE 497 (1091)
Q Consensus 424 d~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s-~~~d~~i~iwd~---~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1091)
++. +++ ......+..+. .+..++|+|+|+ ++++ +..++.|.+||+ .+++.+..+..+ ..+.+++|+ +
T Consensus 66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s--~ 138 (343)
T 1ri6_A 66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS--P 138 (343)
T ss_dssp EECTTTCC-EEEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC--T
T ss_pred EecCCCCc-eeeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC--C
Confidence 998 544 22233444443 789999999999 4544 445889999999 444555555544 357778885 4
Q ss_pred CceEEEEEe-cCCeEEEEecCC-CCcee----eec-CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC--cee-
Q 001367 498 NIHFIFSIS-VDGKIKAWLYDS-LGARV----DYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAI- 567 (1091)
Q Consensus 498 ~~~~l~s~~-~dg~i~iwd~~~-~~~~~----~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~- 567 (1091)
++.++++++ .++.|.+||+.+ ++... ... .....+..++|+|+++++++++. .++.|.+|++.. ++.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEE
Confidence 666777766 899999999987 43321 222 23447788999999998877653 256799999853 433
Q ss_pred -eEEEeccc---ccccceEEEEEcCCCCEEEEE-eCCCeEEEEECC--C--CeeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 568 -KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--K--VQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 568 -~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
........ .....+..++|+|++++++++ ..++.|.+|++. + .+.+..+..+. .+..++|+|++++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLI 292 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEE
Confidence 22222111 012356789999999988865 478999999998 3 34455554433 278999999999988
Q ss_pred EEE-CCCeEEEEECC
Q 001367 639 VIA-NENRIKILETP 652 (1091)
Q Consensus 639 ~~~-~dg~i~iwd~~ 652 (1091)
+++ .++.|.+|++.
T Consensus 293 ~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 293 AAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTTCEEEEEEEE
T ss_pred EecCCCCeEEEEEEc
Confidence 888 57999999554
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-20 Score=211.25 Aligned_cols=274 Identities=11% Similarity=0.085 Sum_probs=212.8
Q ss_pred CCcEEEEEcCCCceEEEEEcC------CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 335 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~------dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
..+..++|+|||++++++... ++.|.+||..+++.+.... ....+..++|+|||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg 100 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT 100 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence 478899999999866555533 6789999999998775411 22457789999999
Q ss_pred CEEEEE-ECCCEEEEEEeeCCcccceeEEEecccc---------CeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 409 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 409 ~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
++++++ ..++.|.+||..+++... .+..+.. .+.+++|+|+|+.+++...+.++.|.+||+.+++.+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 976655 457899999999987554 3333322 278899999999522222246889999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC----CCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
..+..+...+..++++ +++.++++++.++.|.+||..+.+....+.. +...+..++|+|++++++++.. .+
T Consensus 178 ~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~ 252 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA 252 (353)
T ss_dssp EEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred EEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence 8887666667888885 4667899999999999999998877766554 3446788999999998877753 25
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
+.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|+|+
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d 324 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD 324 (353)
T ss_dssp SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence 679999999999888777533 25689999999777765 68999999999999998887654 3689999999
Q ss_pred CCEEEEEECCC
Q 001367 634 GTLLAVIANEN 644 (1091)
Q Consensus 634 ~~~l~~~~~dg 644 (1091)
|++++++..++
T Consensus 325 g~~l~v~~~~~ 335 (353)
T 3vgz_A 325 GKTLYVSVKQK 335 (353)
T ss_dssp SCEEEEEEECC
T ss_pred CCEEEEEEccc
Confidence 99887776653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-21 Score=236.08 Aligned_cols=324 Identities=9% Similarity=0.081 Sum_probs=217.6
Q ss_pred eeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-EEecCCC-----------------cceEEEeecccCCceEEEEE
Q 001367 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHG-----------------APVYSLCPHAKENIHFIFSI 505 (1091)
Q Consensus 444 v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~~~l~s~ 505 (1091)
+..+.|+ |+ .+++++.|+ | +||+.+|+.+ ..+..|. ..|.+++|+++ + .++.+
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~-~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--G-LVVLF 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--T-EEEEE
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--C-eEEEE
Confidence 5567888 55 466677777 8 9999999873 3443333 46899999654 3 44443
Q ss_pred ecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC-----ceeeEEEecccc----
Q 001367 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-----GAIKRTYQGLQL---- 576 (1091)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-----~~~~~~~~~~~~---- 576 (1091)
.++.|++||+.+++... +..+...+.+++|||||++|+++. ++.|++||+.+ ++..........
T Consensus 99 -~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 45999999998765443 334455688899999999999864 45799999998 776654443330
Q ss_pred -------cccceEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEECCCCeeEEEE
Q 001367 577 -------QHNSVSVVHFDTAKDQILAAG---------------------------------DDHVIKIWDMNKVQLLTTI 616 (1091)
Q Consensus 577 -------~~~~v~~v~~~~~~~~l~~~s---------------------------------~dg~i~iwd~~~~~~~~~~ 616 (1091)
+...+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 001147899999999999987 4578999999998865544
Q ss_pred eCCCCCCCCceEEEccCCCEEEEEECCC-----eEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCC
Q 001367 617 DAGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNE 691 (1091)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~ 691 (1091)
....+...+..++|+|||++|++++.++ .|++||..++.....+.
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~------------------------------ 301 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF------------------------------ 301 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE------------------------------
Confidence 3322333578999999999999887665 78888876542111100
Q ss_pred CCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccccccc
Q 001367 692 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 771 (1091)
Q Consensus 692 ~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~ 771 (1091)
.....
T Consensus 302 ----------------------------------------------------------~~~~~----------------- 306 (706)
T 2z3z_A 302 ----------------------------------------------------------VETDK----------------- 306 (706)
T ss_dssp ----------------------------------------------------------EEECS-----------------
T ss_pred ----------------------------------------------------------EccCC-----------------
Confidence 00000
Q ss_pred ceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC--CCCEEEEEe-CCeEEEEEcc-CceeEEEecCCCCCeEE
Q 001367 772 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK--NDAYLFSAS-GGVISLYIVM-TFKTILTIMPPSPTATS 847 (1091)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~la~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~~ 847 (1091)
.....+..++|+| ||+++++++ ++.++||++. +++.+..+..+...+..
T Consensus 307 ---------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~ 359 (706)
T 2z3z_A 307 ---------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTN 359 (706)
T ss_dssp ---------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEE
T ss_pred ---------------------------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEe
Confidence 0011234566777 777776665 5667777765 56667777777777876
Q ss_pred -EEEcCCCCcEEEE-EeCCC----eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCC----CcEEEEEcCCC
Q 001367 848 -LAFNPHDNNVIAI-GMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----AQIFVWDVDGW 917 (1091)
Q Consensus 848 -l~~s~~~~~~la~-g~~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D----g~i~vwd~~~~ 917 (1091)
++|+| +++.|+. +..++ .|+.||+.+++ ...+. |...+.+++|||||++++..+.+ +.|++||+.++
T Consensus 360 ~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 360 FAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred eeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 79999 6666554 44444 77777877765 34444 67779999999999998876544 56999999886
Q ss_pred c
Q 001367 918 G 918 (1091)
Q Consensus 918 ~ 918 (1091)
+
T Consensus 437 ~ 437 (706)
T 2z3z_A 437 S 437 (706)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-20 Score=206.68 Aligned_cols=282 Identities=9% Similarity=0.106 Sum_probs=191.6
Q ss_pred cccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC-ceEEEeecCCcccccccceeecc
Q 001367 699 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKV 777 (1091)
Q Consensus 699 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~ 777 (1091)
.+++++.++.|++|+++...... .+.. ..+...+..++|+|+|+++++++.+ +.+.+|++...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~------------ 70 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALT--LTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD------------ 70 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEE--EEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT------------
T ss_pred EEEeCCCCCeEEEEEECCCCcEE--Eeee--EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC------------
Confidence 34455778999999986321111 1111 1245678889999999988888876 99999997521
Q ss_pred CCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEc---cCceeEEEecCCCCCeEEEEEcC
Q 001367 778 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNP 852 (1091)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~ 852 (1091)
++.......+. ....+..++|+|+|+++++++ ++.|.+||+ .+++....+.. ...+.+++|+|
T Consensus 71 --------~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~ 138 (343)
T 1ri6_A 71 --------DGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP 138 (343)
T ss_dssp --------TCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT
T ss_pred --------CCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC
Confidence 11111111111 122778999999999887776 688999999 44555555553 34688999999
Q ss_pred CCCcEEEEEe-CCCeEEEEeccC-cceee----eecc-ccCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCC--Cceeee
Q 001367 853 HDNNVIAIGM-DDSTILIYNARS-SEVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTC 922 (1091)
Q Consensus 853 ~~~~~la~g~-~dg~i~iwd~~~-~~~~~----~l~~-h~~~V~~l~~spdg~~las~s-~Dg~i~vwd~~~--~~~~~~ 922 (1091)
++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|+|++|+.++ .++.|.+|++.. ++....
T Consensus 139 -dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 139 -DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp -TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred -CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence 787777776 899999999987 65432 2222 334788999999999776554 789999999954 433222
Q ss_pred eeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcC--Cc--ceeeeeecCCccCEEEEEEeeCCCEEEEEE
Q 001367 923 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 923 ~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~--~~--~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
..+............+..++|+|||++|+++ .++.|.+||+. ++ +.+..+. .+. .+..++|+|||++|++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TET-QPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSS-SCCCEEECTTSSEEEEEC
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CCC-ccceEEECCCCCEEEEec
Confidence 2233222211111246689999999988863 57899999998 33 3333322 223 388999999999988887
Q ss_pred -cCCcEEEEeC--CCCce
Q 001367 997 -VDGTLSIHEA--SNLEV 1011 (1091)
Q Consensus 997 -~dg~v~iwd~--~~~~~ 1011 (1091)
.++.|.+|++ .++..
T Consensus 296 ~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 296 QKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp TTTCEEEEEEEETTTTEE
T ss_pred CCCCeEEEEEEcCCCcee
Confidence 5799999954 46654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.5e-20 Score=201.56 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=195.3
Q ss_pred EEecCCCe-EEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEE
Q 001367 740 TYNNGGQA-IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 818 (1091)
Q Consensus 740 ~~s~dg~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 818 (1091)
.|.+++.. +++...++.+.+||.... +....... +...+ .++|+|||+++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~----------------------~~~~~~~~----~~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL----------------------EILNQITL----GYDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC----------------------CEEEEEEC----CCCEE-EEEECSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc----------------------ceeeeEEc----cCCcc-eEEEcCCCCEEEE
Confidence 45555555 556666889999886433 22222222 34445 9999999997777
Q ss_pred Ee--CCeEEEEEccCcee-EEEecCCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEeccCcceeeeeccccCCeEEEE
Q 001367 819 AS--GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEVISKLEGHSKRVTGLV 892 (1091)
Q Consensus 819 ~~--dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg---~i~iwd~~~~~~~~~l~~h~~~V~~l~ 892 (1091)
++ ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++ .|.+||+.+++.+..+..+ ....+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence 66 57999999999987 666665655555599999 888888655553 9999999999988877654 4578999
Q ss_pred ECCCCCEEEE-EeCCCc-EEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcce
Q 001367 893 FSDALNILVS-SGGDAQ-IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC 968 (1091)
Q Consensus 893 ~spdg~~las-~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~~ 968 (1091)
|+|||++|++ ...++. |.+|++................. .....++|+|||++++++ .++.|.+||+.+++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 9999986554 456688 99999986432211111111111 247899999999977664 468999999999887
Q ss_pred ---eeeeecCCccCEEEEEEeeCCCEEEEEE-cCCcEEEEeCCCCce--EEEeecccccCCCCcccccc-eeEEEeCCCC
Q 001367 969 ---LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEV--QCRILSTAYLRPTTSCLHVY-PHAIAAHPLK 1041 (1091)
Q Consensus 969 ---~~~~~~~h~~~v~~v~fs~dg~~l~t~~-~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~-~~~~~~~p~d 1041 (1091)
+..+. +...+..++|+|||++|++++ .++.|.+||+.+++. +..+... .... ..... ...++|+|+
T Consensus 211 ~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~spd- 283 (331)
T 3u4y_A 211 ITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG--LLID--PRPLFGANQMALNKT- 283 (331)
T ss_dssp CEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC--CCCC--CGGGTTCCCEEECTT-
T ss_pred cceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc--cccC--CCCcccccceEECCC-
Confidence 66543 246678899999999776655 477899999999887 3332211 1000 11111 134789994
Q ss_pred CCeEEE-EecCCcEEEEecCCCC
Q 001367 1042 PTQFAV-GLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1042 ~~~l~~-g~~dg~v~~w~~~~~~ 1063 (1091)
+++|++ +..++.|.+|++....
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEecCCCCcEEEEEecCCc
Confidence 676654 4556799999997655
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-20 Score=203.80 Aligned_cols=279 Identities=13% Similarity=0.090 Sum_probs=202.2
Q ss_pred CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE-ECCCeEEEEECCCCCeeccccccccccee
Q 001367 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRK 669 (1091)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1091)
+++++++.++.|++||+.+++.+..+........+..++|+|++++++++ ..++.|.+||+.+++....+......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence 47888999999999999999999888755421126789999999876554 45789999998766443322100000
Q ss_pred eeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE
Q 001367 670 LSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 670 ~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
.+..
T Consensus 79 -------------------------------------------------------------~~~~--------------- 82 (337)
T 1pby_B 79 -------------------------------------------------------------ERVK--------------- 82 (337)
T ss_dssp -------------------------------------------------------------EEEE---------------
T ss_pred -------------------------------------------------------------cccc---------------
Confidence 0000
Q ss_pred EeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEE----------
Q 001367 750 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---------- 819 (1091)
Q Consensus 750 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~---------- 819 (1091)
.+..++++|||++++++
T Consensus 83 -----------------------------------------------------~~~~~~~s~dg~~l~~~~~~~~~~~~~ 109 (337)
T 1pby_B 83 -----------------------------------------------------SLFGAALSPDGKTLAIYESPVRLELTH 109 (337)
T ss_dssp -----------------------------------------------------CTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred -----------------------------------------------------cccceEECCCCCEEEEEeccccccccc
Confidence 12234444555444444
Q ss_pred ---eCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCC
Q 001367 820 ---SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 896 (1091)
Q Consensus 820 ---~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd 896 (1091)
.++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+||
T Consensus 110 ~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~d 184 (337)
T 1pby_B 110 FEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPD 184 (337)
T ss_dssp EEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCB
T ss_pred ccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCC
Confidence 358899999999988887764 45678899999 78877777 68899999999988777765431 112378999
Q ss_pred CCEEEEEeCCC------------------------cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 897 LNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 897 g~~las~s~Dg------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
|+.|+..+.++ .|.+||+.+++.. ...... +. ..+..++|+|||+++++
T Consensus 185 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~---~~---~~~~~~~~s~dg~~l~~ 257 (337)
T 1pby_B 185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI---MD---VFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE---CS---SCEEEEEECTTSSEEEE
T ss_pred ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC---CC---CceeeEEECCCCCEEEE
Confidence 98776544332 4689999987654 111211 11 24678999999999998
Q ss_pred EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 953 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 953 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
+ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|.+||+.+++.+..+.
T Consensus 258 ~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 258 A-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp E-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred e-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 8 89999999999988776543 3467899999999999999999999999999999887776
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-20 Score=204.75 Aligned_cols=280 Identities=10% Similarity=0.048 Sum_probs=206.4
Q ss_pred EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc-cEEEEEECCCCCEEEEE-ECCCEEEEEEee
Q 001367 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGVA-YSKHIVQLYAYH 426 (1091)
Q Consensus 349 llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~spdg~~las~-~~d~~i~iwd~~ 426 (1091)
++++++.+++|.+||+.+++.+.... .++.. .+.+++|+|||++++++ ..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 67889999999999999988765311 12222 47889999999877554 567899999999
Q ss_pred CCcccceeEEEec---cccCeeEEEEcCCCCceEEEEee------------CCCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 427 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 427 ~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
+++.+... .... |...+..++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+..+
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 88755422 1111 223678999999999 555554 579999999999988877764 4456777
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC------------------
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------------------ 553 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~------------------ 553 (1091)
+|+ +++.+++++ ++.|.+||+.+++....+..... ...+.|+|+++.++..+.....
T Consensus 141 ~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 141 AWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp EEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred EEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 874 466777777 68999999998876665554331 1123789999877655421110
Q ss_pred --ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 554 --ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 554 --~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
...|.+||..+++.. ...... +...+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|+
T Consensus 216 ~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s 288 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVS 288 (337)
T ss_dssp GEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEEC
T ss_pred ccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEEC
Confidence 015799999998775 322211 23568889999999999988 7999999999999888887543 46899999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCCeeccccc
Q 001367 632 KNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
|+++++++++.++.|.+||+.+++.+..+..
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9999999998899999999999877766553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=203.53 Aligned_cols=258 Identities=14% Similarity=0.118 Sum_probs=186.7
Q ss_pred EEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeC-Cc
Q 001367 351 LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GS 429 (1091)
Q Consensus 351 asg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~-~~ 429 (1091)
..++.|++|.+||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++
T Consensus 16 ~~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~ 74 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS 74 (297)
T ss_dssp --CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS
T ss_pred CCCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC
Confidence 345678999999999887553 345788999999999999999987 78999999998 76
Q ss_pred ccceeEEEecc-ccCeeEEEEcCCCCceEEEEee--CCCcEEEE--eCCCCceeEEecCCCcceEEEeecccCCceEEE-
Q 001367 430 DARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF- 503 (1091)
Q Consensus 430 ~~~~~~~~~~h-~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~- 503 (1091)
... ...+| ...+.+++|+|||+ ++++++ .++.+.|| +..++. ...+..+. .+..++|++ ++..++
T Consensus 75 ~~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~ 145 (297)
T 2ojh_A 75 PEK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTY 145 (297)
T ss_dssp CEE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEE
T ss_pred ceE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEE
Confidence 443 23344 46789999999999 677777 33445555 545554 44554443 478888854 666665
Q ss_pred EEecCCeEEEEecCCC-CceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC-CceeeEEEecccccccce
Q 001367 504 SISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSV 581 (1091)
Q Consensus 504 s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v 581 (1091)
+++.++.+++|+++.. .....+..+...+.+++|+|+++++++++.. ++.+.+|++. .+.....+..+. ..+
T Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~ 219 (297)
T 2ojh_A 146 CGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGD 219 (297)
T ss_dssp EEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEE
T ss_pred EECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---ccc
Confidence 7889999999997543 3444556667789999999999998877631 2346666654 344455565554 678
Q ss_pred EEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC
Q 001367 582 SVVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 582 ~~v~~~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
..++|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus 220 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 220 WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 899999999999887765 569999999887644443222223588899999999998887653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=231.61 Aligned_cols=377 Identities=12% Similarity=0.031 Sum_probs=242.6
Q ss_pred EEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC---------CCeEEE
Q 001367 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 604 (1091)
Q Consensus 534 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~---------dg~i~i 604 (1091)
+++|+|||+++++. . ++.|++||+.+++....+.++......+.+++|+|||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999655543 2 556999999999987777665411124889999999999998876 789999
Q ss_pred EECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccc-cccccceeeeeccccccccccc
Q 001367 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVTGAGI 683 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 683 (1091)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.++....... ++..
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~------------------ 152 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN------------------ 152 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC------------------
Confidence 999998873111111 2478899999999999986 6899999998775432211 0000
Q ss_pred cCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC-ceEEEeec
Q 001367 684 ANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRW 762 (1091)
Q Consensus 684 ~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~vw~~ 762 (1091)
.+..|..+ .++.-+ -.....+++|||||+.|+.++.+ +.+.+|.+
T Consensus 153 ---------------~v~~g~~~---~v~~ee----------------~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 153 ---------------KIFNGIPD---WVYEEE----------------MLATKYALWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp ---------------TEEESSCC---HHHHHH----------------TTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred ---------------CeEccccc---ceeeee----------------cccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence 00000000 000000 00123478999999999988765 44555543
Q ss_pred CCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeE-------
Q 001367 763 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI------- 835 (1091)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~------- 835 (1091)
.... . .+...+..+.+...|.. .....|++||+.+++..
T Consensus 199 ~~~~--------------------~-----------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~ 244 (719)
T 1z68_A 199 SYYG--------------------D-----------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVPV 244 (719)
T ss_dssp EECC--------------------S-----------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECCC
T ss_pred eccC--------------------C-----------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEccC
Confidence 2110 0 12223445555544431 11247999999988753
Q ss_pred -EEecCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEe----ccCcceeeee----ccccCCeE-----EEEECCCC
Q 001367 836 -LTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDAL 897 (1091)
Q Consensus 836 -~~~~~~~~~i~~l~~s~~~~~~la~g~~d----g~i~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~spdg 897 (1091)
..+..+...+..++||| |++++++.... ..|.+|| +.++++...+ .+|.+.+. .++|||||
T Consensus 245 ~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 245 PAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 12335777899999999 68887774432 3588999 8888876666 46777776 89999999
Q ss_pred CEEEE--EeCCC--cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-Eec-----CeEEEEEcCC--
Q 001367 898 NILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE-- 965 (1091)
Q Consensus 898 ~~las--~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d-----~~i~vwd~~~-- 965 (1091)
+.|+. ...+| .|.+||+.+++. .. +..+.. .+..+.++ +++.|+. +.+ +..++|.+..
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~~---~~---lt~~~~---~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~ 393 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVENA---IQ---ITSGKW---EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS 393 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTTC---EE---CSCSSS---CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred CeEEEEEEccCCceEEEEEECCCCce---Ee---cccCce---EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence 96654 44555 567777766541 11 112211 46777788 8888877 443 6788887653
Q ss_pred cce-eeee---ecCCccCEEEEEEeeCCCEEEEE-EcC--CcEEEEeCCCCceEEEee
Q 001367 966 LTC-LKQW---FPISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 966 ~~~-~~~~---~~~h~~~v~~v~fs~dg~~l~t~-~~d--g~v~iwd~~~~~~~~~~~ 1016 (1091)
+.. ...+ +.+|...+..+.|||||++++.. +.+ ..+.+||+.+++....+.
T Consensus 394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 421 1221 12256678899999999877744 333 468899999888655444
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-19 Score=196.60 Aligned_cols=261 Identities=13% Similarity=0.121 Sum_probs=203.9
Q ss_pred CccEEEEEECCCCCEEEEEEC-------CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 396 GVSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~-------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
...+..++|+|+|++|++++. ++.|.+||..+++.... +. ....+..++|+|+|+. ++++...++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence 357889999999999988874 56899999999875543 32 2345788999999995 455666689999
Q ss_pred EEeCCCCceeEEecCCCcc---------eEEEeecccCCceEEEEEe--cCCeEEEEecCCCCceeeecCCCCcEEEEEE
Q 001367 469 VWDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1091)
+||..+++.+..+..+... +..+++++ ++.++++++ .++.|.+||..+.+....+......+.+++|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 9999999988888654432 67788854 555665555 5789999999988887777756666888999
Q ss_pred cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc-cccceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeEEE
Q 001367 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 538 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~ 615 (1091)
+|+|++++++.. ++.|.+||..+++....+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..
T Consensus 193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999988864 56799999999998887765221 2356788999999998887665 59999999999999888
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEE-CCCeEEEEECCCCCeecccccccccceeeee
Q 001367 616 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
+..... ..++|+|++++++++. .++.|.+||..+++.+..+... .....++|
T Consensus 269 ~~~~~~----~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~ 321 (353)
T 3vgz_A 269 VAAPES----LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLAL 321 (353)
T ss_dssp EECSSC----CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEE
T ss_pred EEcCCC----ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEE
Confidence 876432 6799999999776666 6899999999998777666543 35567777
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=228.00 Aligned_cols=279 Identities=14% Similarity=0.079 Sum_probs=196.8
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc---cEEEEEECCCCCEEEEE
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~las~ 414 (1091)
..++|+|||+ +++++ .|++|++||+.+|+.... +.+|.. .|.+++|||||++||++
T Consensus 19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence 3789999996 65655 589999999999986542 333333 48999999999999998
Q ss_pred EC---------CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-cCC
Q 001367 415 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH 484 (1091)
Q Consensus 415 ~~---------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~ 484 (1091)
+. ++.|++||+.+++.+... .+ ...+..++|||||+ .|+.+. ++.|++||+.+++..+.. .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 76 689999999998652100 12 25688999999999 566665 789999999988765432 233
Q ss_pred Ccce-----------------EEEeecccCCceEEEEEecCC----------------------------------eEEE
Q 001367 485 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA 513 (1091)
Q Consensus 485 ~~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~i 513 (1091)
...| .+++| ++||++|++++.|. .|++
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 2222 36777 56788999887652 7889
Q ss_pred EecCCCCce--ee------ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe----cCCceeeEEE----eccccc
Q 001367 514 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ 577 (1091)
Q Consensus 514 wd~~~~~~~--~~------~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~ 577 (1091)
||+.+++.. .. +..+...+..++|+||++.+++..........|++|| ..+++....+ .++.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~-- 306 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT-- 306 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence 999876542 11 2346667899999999877776544334456799999 8888766555 2333
Q ss_pred ccceE-----EEEEcCCCCEEEE--EeCCC--eEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC-----
Q 001367 578 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----- 643 (1091)
Q Consensus 578 ~~~v~-----~v~~~~~~~~l~~--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----- 643 (1091)
..+. .+.|+|||+.++. ...+| .|++||+.+++. ..+..+. ..+..+.++ +++.++..+.+
T Consensus 307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~--~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGK--WEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSS--SCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCc--eEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 4454 7889999997655 33455 577788877763 3333222 245667777 88887777765
Q ss_pred CeEEEEECCC
Q 001367 644 NRIKILETPE 653 (1091)
Q Consensus 644 g~i~iwd~~~ 653 (1091)
+..++|.+..
T Consensus 382 ~~~~l~~~~~ 391 (719)
T 1z68_A 382 GRRNIYRISI 391 (719)
T ss_dssp TCBEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 7788887653
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-20 Score=220.31 Aligned_cols=273 Identities=12% Similarity=0.079 Sum_probs=197.8
Q ss_pred CCCcEEEEEcCCCceEEEEEcC-CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC-ccEEEEEECCCCCEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL 411 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~-dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l 411 (1091)
..+|++++|||||++| |+++. ||++.||++.+++... +..|. ..|.+++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~l-a~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKL-LVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTEE-EEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCeE-EEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 4489999999999965 55554 9999999997665443 33454 68999999999 777
Q ss_pred EEEEC---CCEEEEEEeeC--CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 412 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 412 as~~~---d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
++++. +....+|.+.. ..... .+..+ ..+...+|+|||+.+++++++.++ +.+||+.+++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence 77765 45567776654 22112 22222 234467999999875666666555 5599999887655544333
Q ss_pred ceEEEeecccCCceEEEEEecC----CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 487 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
.+++|+ +||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+
T Consensus 153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 666774 577899988877 78999999877655 55667778899999999999995443 33458999999
Q ss_pred CCceeeEEEecccccccceEEEE--------EcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~--------~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1091)
.+++.. .+.++. ..+..++ |+|||..+++++.++++++|++ ++.... .. ..+..++|+ ++
T Consensus 226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~--~~v~~~~~s-dg 293 (582)
T 3o4h_A 226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQ--GNHGRVVLW-RG 293 (582)
T ss_dssp TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CS--SEEEEEEEE-TT
T ss_pred CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CC--CceEEEEec-CC
Confidence 998877 655554 4455555 9999988888999999999999 665441 11 357789999 99
Q ss_pred CEEEEEECCCe---EEEEECCC
Q 001367 635 TLLAVIANENR---IKILETPE 653 (1091)
Q Consensus 635 ~~l~~~~~dg~---i~iwd~~~ 653 (1091)
+++++++.+.+ +++|+..+
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEEcCCCCCCeEEEEcCCC
Confidence 99988887644 66666543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=194.08 Aligned_cols=243 Identities=12% Similarity=0.064 Sum_probs=180.1
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCC-CccEEEEE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVV 403 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~ 403 (1091)
....+..|...|.+++|||||++ +++++ ++.|.+||+.+ ++.... ..+| ...|.+++
T Consensus 33 ~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNNDHG 91 (297)
T ss_dssp EEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSCCE
T ss_pred ceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccceE
Confidence 34456678889999999999995 56665 78999999998 765532 3334 47889999
Q ss_pred ECCCCCEEEEEE--CCCEEEEEEee--CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC-CCcee
Q 001367 404 WSPDGSLLGVAY--SKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRT 478 (1091)
Q Consensus 404 ~spdg~~las~~--~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~ 478 (1091)
|+|||++|++++ .++...||.+. ++. .. .+..+ ..+..++|+||++. ++++++.++.++||++. .+...
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCCE
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCCcc
Confidence 999999999998 33455666554 433 22 33333 35899999999994 34478889999999863 23345
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEe-cCCeEEEEecC-CCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC----
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE---- 552 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~---- 552 (1091)
..+..+...+.+++|++ ++.+++.++ .++.+++|+++ .......+..+...+.+++|+|+|++|++++.++.
T Consensus 166 ~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp EECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred eEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 66777888899999954 666676655 58999999987 45556666667778999999999999998876422
Q ss_pred ---CceEEEEEecCCceeeEEE--ecccccccceEEEEEcCCCCEEEEEeCCC
Q 001367 553 ---GESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1091)
Q Consensus 553 ---~~~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~s~dg 600 (1091)
....|++||+.+++..... .++. ..+..++|+|++++|++++.+.
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred cccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence 2467999999988664433 3444 6788899999999998876543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=194.17 Aligned_cols=277 Identities=12% Similarity=0.097 Sum_probs=182.5
Q ss_pred ccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeec---CceEEEeecCCcccccccceeeccCCccc
Q 001367 706 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEATTKVPPRLY 782 (1091)
Q Consensus 706 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 782 (1091)
++.+.+|.++.... ....+.. ..+...+..++|+|||+ +++++. ++.+.+|++.......
T Consensus 15 ~~~i~v~~~d~~tg-~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~------------- 77 (347)
T 3hfq_A 15 SQGIYQGTLDTTAK-TLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK------------- 77 (347)
T ss_dssp CCEEEEEEEETTTT-EEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE-------------
T ss_pred CCCEEEEEEcCCCC-eEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE-------------
Confidence 45677887764221 1111111 12345667899999999 666655 5899999874322100
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEcc---CceeEEEecCC---------CCCeEEE
Q 001367 783 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM---TFKTILTIMPP---------SPTATSL 848 (1091)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~---~~~~~~~~~~~---------~~~i~~l 848 (1091)
+.. +. .+...+..++|+|||++|++++ ++.|.+|++. +.+.+..+... ...+.++
T Consensus 78 -------~~~--~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (347)
T 3hfq_A 78 -------LNT--VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYT 146 (347)
T ss_dssp -------EEE--EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred -------eee--ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEE
Confidence 000 00 1455778999999999988887 5899999996 23333333221 2348899
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecc-Cccee--eeeccc-cCCeEEEEECCCCCEEEE-EeCCCcEEEEEcCC--Cceee
Q 001367 849 AFNPHDNNVIAIGMDDSTILIYNAR-SSEVI--SKLEGH-SKRVTGLVFSDALNILVS-SGGDAQIFVWDVDG--WGIQT 921 (1091)
Q Consensus 849 ~~s~~~~~~la~g~~dg~i~iwd~~-~~~~~--~~l~~h-~~~V~~l~~spdg~~las-~s~Dg~i~vwd~~~--~~~~~ 921 (1091)
+|+| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++...
T Consensus 147 ~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 147 DLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 9999 77777777778999999998 55432 222222 236788999999996665 45688999999885 44322
Q ss_pred eeeeeccCCCcCCCCCceEEEEcCCCCEEEE-E-ecCeEEEEEcCCc---ceeeeeecCCccCEEEEEEeeCCCEEEEEE
Q 001367 922 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEEL---TCLKQWFPISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 922 ~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~-~d~~i~vwd~~~~---~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
...+............+..++|+|||++|++ . .++.|.+|++... +.+.. ...+...+..++|+|||++|++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ-ISTEGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE-EECSSSCCCEEEECTTSSEEEEEE
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE-EecCCCCcCeEEECCCCCEEEEEE
Confidence 2223322221111124788999999998865 3 4789999999732 33333 333455688999999999988887
Q ss_pred cC-CcEEEE--eCCCCceE
Q 001367 997 VD-GTLSIH--EASNLEVQ 1012 (1091)
Q Consensus 997 ~d-g~v~iw--d~~~~~~~ 1012 (1091)
.+ +.|.+| |..+|++.
T Consensus 305 ~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 305 QNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TTTTEEEEEEECTTTCCEE
T ss_pred cCCCcEEEEEEeCCCCeEE
Confidence 65 899999 55667665
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-19 Score=216.23 Aligned_cols=363 Identities=11% Similarity=0.066 Sum_probs=226.3
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc-----cEEEEEECCCCC
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS 409 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 409 (1091)
.....++|+|||+ +++++ ||+|++||+.+|+.... +.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 3567899999997 66776 89999999999986532 444442 234589999999
Q ss_pred EEEEEECC---------CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 410 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 410 ~las~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
+|++++.+ +.+.+||+.+++... +..|...+..++|||||+ .|+.+. |+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence 99999876 566799999986443 557788899999999999 566664 78999999988875532
Q ss_pred -ecCCCcce-----------------EEEeecccCCceEEEEEecCCe-EEEEecCCCCceeeecCCCCcEEEEEEcCCC
Q 001367 481 -FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1091)
Q Consensus 481 -~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 541 (1091)
..++...+ ..+.| ++||+.|+.++.|.. +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 22332222 23566 668888988876655 8888764221110 123356677777766
Q ss_pred CEEEEEecCCCCceEEEEEecCC---ce--eeEEEeccc---ccccceEEEEEcCCCCEEEEEe----CCCeEEEEECCC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESE---GA--IKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNK 609 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~s----~dg~i~iwd~~~ 609 (1091)
.. .....|++||+.+ ++ ....+.... .+...+..++|+|||+.++... .+..|++||+.+
T Consensus 223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 223 AV--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp SC--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred Cc--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 43 1244699999998 73 222332200 1236789999999999766643 234799999998
Q ss_pred Ce----eE--EEE--eCCCCCCC---CceEEEccCCCEEE-EEEC-C--CeEEEEECCCCCeecccccccccceeeeecc
Q 001367 610 VQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1091)
Q Consensus 610 ~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 674 (1091)
++ +. ..+ ..+..... ...++|+|||+.++ ..+. + ..|++|+..++.......+ ...+..+..
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~~-- 371 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGIEA-- 371 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEEEE--
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEEEE--
Confidence 87 11 111 22222111 23789999999887 6654 3 4688889887654433333 333333221
Q ss_pred ccccccccccCCcccCCCCCCCCCcc-ccccc----ccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE
Q 001367 675 ISTVTGAGIANGSVSNEDPKEDVKPE-ISVEA----ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 675 ~~~~~~~~~~~g~~~~~~~s~~~~~l-~s~~~----d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
++++.+ +++.. .+...+|.+..........+.............+.|+|+|++++
T Consensus 372 --------------------~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~ 431 (740)
T 4a5s_A 372 --------------------LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ 431 (740)
T ss_dssp --------------------ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred --------------------EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEE
Confidence 223333 23332 23456666543322111111111011345678899999999876
Q ss_pred EeecC---ceEEEeec
Q 001367 750 ALASN---GVHLMWRW 762 (1091)
Q Consensus 750 ~~~~d---g~i~vw~~ 762 (1091)
....+ ..+.+++.
T Consensus 432 ~~~s~~~~p~~~l~~~ 447 (740)
T 4a5s_A 432 LRCSGPGLPLYTLHSS 447 (740)
T ss_dssp EEECSBSSCEEEEEET
T ss_pred EEeCCCCCCEEEEEEC
Confidence 65543 24455543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-17 Score=185.99 Aligned_cols=299 Identities=14% Similarity=0.136 Sum_probs=197.2
Q ss_pred cCCCceEEEEEc----CCCcEEEEEc--CCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC
Q 001367 343 HPVQHTLLLVGT----NVGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1091)
Q Consensus 343 spdg~~llasg~----~dg~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 416 (1091)
.+... .+.+|+ .++.|.+|++ .+|+..... .. +...+..++|+|||++|++++.
T Consensus 10 ~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~-----------------~~--~~~~p~~l~~spdg~~l~~~~~ 69 (361)
T 3scy_A 10 TDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS-----------------DA--EVANPSYLIPSADGKFVYSVNE 69 (361)
T ss_dssp GGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE-----------------EE--ECSCCCSEEECTTSSEEEEEEC
T ss_pred CCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee-----------------cc--cCCCCceEEECCCCCEEEEEEc
Confidence 34443 455664 3568999876 455543210 02 5677888999999999999987
Q ss_pred C----CEEEEEEeeCC-cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe------cC--
Q 001367 417 K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------EG-- 483 (1091)
Q Consensus 417 d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~~-- 483 (1091)
+ +.|.+|++... ..+........+......+++ +++. ++++...++.|.+|++.....+..+ .+
T Consensus 70 ~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 146 (361)
T 3scy_A 70 FSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG 146 (361)
T ss_dssp CSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred cCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence 5 79999999873 233333344445566778888 7773 3444446889999999754433211 11
Q ss_pred ------CCcceEEEeecccCCceEEEEE-ecCCeEEEEecCCCCc------e-------eeecCCCCcEEEEEEcCCCCE
Q 001367 484 ------HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSANGRR 543 (1091)
Q Consensus 484 ------~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~~~~s~d~~~ 543 (1091)
+...+.+++|+ +++++++++ ..++.|.+|+++.... . ............++|+|||++
T Consensus 147 ~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~ 224 (361)
T 3scy_A 147 PDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF 224 (361)
T ss_dssp SCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred CCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE
Confidence 12234678885 567655554 4589999999886542 1 222334456789999999998
Q ss_pred EEEEecCCCCceEEEEEecCCcee--eEEEecccccccceEEEEEcCCCCEEEEEeC--CCeEEEEECC--CCe--eEEE
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMN--KVQ--LLTT 615 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~--dg~i~iwd~~--~~~--~~~~ 615 (1091)
++++.. .++.|.+|++.+++. +..+.....+......++|+|||++++++.. ++.|.+|++. +++ .+..
T Consensus 225 l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 225 AYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE
T ss_pred EEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE
Confidence 887763 256799999987754 2333332222345689999999999987665 4899999985 454 3444
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEE-CCCeEEEEEC--CCCCeeccc-ccccccceeeee
Q 001367 616 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILET--PESNSVDAA-GVLSDNLRKLSV 672 (1091)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~-~~~~~~v~~~~~ 672 (1091)
+.. + ..+..++|+|+|++|++++ .++.|.+|++ .+++..... ..+...+.|+.|
T Consensus 302 ~~~-g--~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 302 QLT-G--IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEC-S--SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred ecC-C--CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 444 2 2568999999999998888 5789999655 455544332 223345666665
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-19 Score=198.97 Aligned_cols=306 Identities=10% Similarity=0.017 Sum_probs=201.4
Q ss_pred CCCchheeeecccCCCCcEE-----EEEcCCCceEEEEEcCCC--cEEEEEcCCCCceeeeceeEEeccccccceeeeee
Q 001367 320 SDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392 (1091)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~-----v~fspdg~~llasg~~dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (1091)
+.........|..|...+.. .+|||||++|++++..+| .|.+||+.+++.... .
T Consensus 16 ~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t 76 (388)
T 3pe7_A 16 DASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------T 76 (388)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------C
T ss_pred cCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------e
Confidence 33445566777777766665 899999997655555467 488889988876542 3
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEE--EcCCCCceEEEE----------
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVIT---------- 460 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~~~l~s---------- 460 (1091)
.++...+..++|||||++|++++.++.|++||+.+++... ....+...+.... +++|++ +++.
T Consensus 77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~ 151 (388)
T 3pe7_A 77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVP 151 (388)
T ss_dssp CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCC
T ss_pred eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccccc
Confidence 4455555577899999999999999999999999986443 2334444444343 489998 4543
Q ss_pred ------------eeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC------CeEEEEecCCCCce
Q 001367 461 ------------CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGAR 522 (1091)
Q Consensus 461 ------------~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~ 522 (1091)
.+.+..|.+||+.+++.. .+..+...+..++|+|. ++..|+....+ ..|.++|.......
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (388)
T 3pe7_A 152 LTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMR 229 (388)
T ss_dssp CCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred ccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence 224578999999998654 44456667888888541 66777776653 36777777665444
Q ss_pred eeecCCC-CcEEEEEEcCCCCEEEEEecC-CCCceEEEEEecCCceeeEE--EecccccccceEEEEEcCCCCEEEEE--
Q 001367 523 VDYDAPG-LGCTRMAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA-- 596 (1091)
Q Consensus 523 ~~~~~~~-~~i~~~~~s~d~~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~-- 596 (1091)
....... ..+..++|+|||+.|+..+.. +.....|++||+.+++.... +.++...........|+|||+.++..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 3333332 357788999999988765543 22234699999999875332 22211000001123689999988764
Q ss_pred -------eCCCeEEEEECCCCeeEEEEeCCCCCC--------CCceEEEccCCCEEEEEEC-CCeEEEEEC
Q 001367 597 -------GDDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILET 651 (1091)
Q Consensus 597 -------s~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iwd~ 651 (1091)
..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...+|.+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 456789999999987654443322110 3678899999998887765 566666644
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-17 Score=184.97 Aligned_cols=251 Identities=11% Similarity=0.148 Sum_probs=173.2
Q ss_pred CCccEEEEEECCCCCEEEEEEC---CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCCcEEEE
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVW 470 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i~iw 470 (1091)
+...+..++|+|||+ |++++. ++.|.+|++.+++. +....+..+...+..++|+|||+ +|++++ .++.|.+|
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVM 113 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEE
Confidence 456778899999999 555543 68999999987652 33334456777899999999999 566666 78999999
Q ss_pred eCCC-Cc--eeEEecC---------CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee---eec-CCCCcEEE
Q 001367 471 DAVT-GS--RTYSFEG---------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYD-APGLGCTR 534 (1091)
Q Consensus 471 d~~~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~~i~~ 534 (1091)
|+.. +. .+..+.. +...+.+++|++ +++++++...++.|.+|++....... ... ........
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 9863 32 2333321 122477788855 55677777778999999998433222 112 23336778
Q ss_pred EEEcCCCCEEEEEecCCCCceEEEEEecCC--ceee--EEEecccc---cccceEEEEEcCCCCEEEE-EeCCCeEEEEE
Q 001367 535 MAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIK--RTYQGLQL---QHNSVSVVHFDTAKDQILA-AGDDHVIKIWD 606 (1091)
Q Consensus 535 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~~--~~~~~~~~---~~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd 606 (1091)
++|+|||++++++.. .++.+.+|++.. ++.. ..+..... ....+..++|+|+|+++++ ...++.|.+|+
T Consensus 192 ~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 999999998877653 256788998774 5432 22222210 0135888999999998855 56789999999
Q ss_pred CCC---CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC-CeEEEEEC--CCCCe
Q 001367 607 MNK---VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILET--PESNS 656 (1091)
Q Consensus 607 ~~~---~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~--~~~~~ 656 (1091)
+.. .+.+..+..++. .+..++|+|||++|+++..+ +.|.+|++ .+++.
T Consensus 269 ~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp ECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred ECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 973 245555554332 46899999999999888764 89999954 44543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-17 Score=181.81 Aligned_cols=310 Identities=12% Similarity=0.122 Sum_probs=191.8
Q ss_pred CCCCEEEEEecCCCCceEEEEEec--CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC----CeEEEEECCC--C
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V 610 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d----g~i~iwd~~~--~ 610 (1091)
+...++++++.....++.|++|.+ .+++.......+ ...+..++|+|++++|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 344456666544334556777755 556554333322 3677889999999999998875 7999998765 5
Q ss_pred eeE--EEEeCCCCCCCCceEEEccCCCEEEEEE-CCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCc
Q 001367 611 QLL--TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1091)
Q Consensus 611 ~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~ 687 (1091)
+.. .....+.. ....+++ ++++++++. .++.+.+|++.....+......
T Consensus 88 ~~~~~~~~~~~~~--~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~------------------------ 139 (361)
T 3scy_A 88 TLHLLNTQKTMGA--DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV------------------------ 139 (361)
T ss_dssp EEEEEEEEECSSS--CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE------------------------
T ss_pred cEEEeeEeccCCC--CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee------------------------
Confidence 433 33332222 3456666 788777776 5789999998643222111000
Q ss_pred ccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccc
Q 001367 688 VSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 767 (1091)
Q Consensus 688 ~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~ 767 (1091)
+. ..+. +
T Consensus 140 ---------------------------------------------------~~--~~g~--------~------------ 146 (361)
T 3scy_A 140 ---------------------------------------------------IE--FKGS--------G------------ 146 (361)
T ss_dssp ---------------------------------------------------EE--CCCC--------C------------
T ss_pred ---------------------------------------------------EE--ccCC--------C------------
Confidence 00 0000 0
Q ss_pred ccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCce-------e----
Q 001367 768 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T---- 834 (1091)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~-------~---- 834 (1091)
+. +...+...+.+++|+|||+++++++ ++.|.+|++.... .
T Consensus 147 ----------------~~----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 147 ----------------PD----------KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp ----------------SC----------TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred ----------------CC----------ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 00 0001233456677777777666554 4678888776432 1
Q ss_pred --EEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEeccCcce--eeee---ccccCCeEEEEECCCCCEEEEEeCC
Q 001367 835 --ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGGD 906 (1091)
Q Consensus 835 --~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~i~iwd~~~~~~--~~~l---~~h~~~V~~l~~spdg~~las~s~D 906 (1091)
......+......++|+| +++++++++ .++.|.+|++.+++. +..+ ..+.....+++|+|||++|+++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 201 TPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred cccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 111223455678999999 888777666 689999999987754 2222 3344567899999999998766654
Q ss_pred --CcEEEEEcC--CCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEE--cCCcceeeeeecCCcc
Q 001367 907 --AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYE--AEELTCLKQWFPISSV 978 (1091)
Q Consensus 907 --g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd--~~~~~~~~~~~~~h~~ 978 (1091)
+.|.+|+++ ++.......+.. + ..+..++|+|||++|+++ .++.|.+|+ ..+++........+..
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~ 352 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVD 352 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECS
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCC
Confidence 899999996 344322222222 2 246799999999999885 467899965 4566654432223456
Q ss_pred CEEEEEEe
Q 001367 979 PISQATFS 986 (1091)
Q Consensus 979 ~v~~v~fs 986 (1091)
.+.++.|.
T Consensus 353 ~p~~v~~~ 360 (361)
T 3scy_A 353 KPVCLKFV 360 (361)
T ss_dssp SEEEEEEE
T ss_pred CCeEEEEc
Confidence 78888886
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-19 Score=200.56 Aligned_cols=268 Identities=13% Similarity=0.104 Sum_probs=182.5
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEEccCcee----------EEE-----ecCCCCCeEEEEEcCCCCcEEE----EE
Q 001367 801 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT----------ILT-----IMPPSPTATSLAFNPHDNNVIA----IG 861 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~----------~~~-----~~~~~~~i~~l~~s~~~~~~la----~g 861 (1091)
...+..+++++++.++++++.+.+++|+...... +.. ...+...|.+++|+| ++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 4467899999999999999865699988642211 111 112456799999999 888998 78
Q ss_pred eCCCeEEEEeccCc--------ce---eeeeccccCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeccC
Q 001367 862 MDDSTILIYNARSS--------EV---ISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 929 (1091)
Q Consensus 862 ~~dg~i~iwd~~~~--------~~---~~~l~~h~~~V~~l~~spd-g~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 929 (1091)
+.|+.|++||+.++ +. +..+.+|.+.|++++|+|+ +++|++++.||+|++||+.++.. .....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----eeecc
Confidence 89999999999765 21 4566789999999999998 89999999999999999998632 22222
Q ss_pred CCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeec------CCccCEEEEEEeeCCCEEEEE-EcCCc-
Q 001367 930 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTS-FVDGT- 1000 (1091)
Q Consensus 930 ~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~------~h~~~v~~v~fs~dg~~l~t~-~~dg~- 1000 (1091)
+|.. .+.+++|+|+|++|++ +.|+.|++||.+ ++....+.. .|...|.+++|++++.++++. ..||.
T Consensus 190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 3443 7999999999999999 578999999998 444433211 234489999999999887643 34433
Q ss_pred -----EEEEeCCCCce-----EEEeecccccCCCCcccccceeEEEeCCCCCCe-EEEEecCCcEEEEecCCCCCCcccC
Q 001367 1001 -----LSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ-FAVGLTNGEVYVIEPNEPGDTWAVL 1069 (1091)
Q Consensus 1001 -----v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~-l~~g~~dg~v~~w~~~~~~~~~~~~ 1069 (1091)
+++|++..... ...+....+ +.+ ..+.....+.+.++ .++ +++.+..+.|.+......+..|...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~-~~~--~~r~~~~~~~~l~d-w~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCY-GSC--TERQHHYYLSYIEE-WDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSC-CCC--SSSCCCEEEEEEGG-GTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCC-CCC--CCcCcceeeehhcc-CCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 89999986531 111111111 000 11111223444453 445 4555556679999877666668666
Q ss_pred CCCccccCCCCcC
Q 001367 1070 PPDEIVGDQPTST 1082 (1091)
Q Consensus 1070 ~~~~~~~~~~~~~ 1082 (1091)
...|...++-+-.
T Consensus 342 ~~~d~~ra~lP~~ 354 (434)
T 2oit_A 342 LLEDSSRAELPVT 354 (434)
T ss_dssp EECGGGCCBCCBC
T ss_pred eccccccccccCC
Confidence 6555444443333
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-18 Score=195.76 Aligned_cols=263 Identities=12% Similarity=0.051 Sum_probs=176.6
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE-
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG- 412 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 412 (1091)
...+..+++++++. ++++|+.++ ++||+...-....... .+.. ............|...|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 567787777 9998864211100000 0000 000000011224677899999999999999
Q ss_pred ---EEECCCEEEEEEeeCC--------cccceeEEEeccccCeeEEEEcCC-CCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 413 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 413 ---s~~~d~~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
+|+.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||+.++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7788999999999875 222233456689999999999998 56 899999999999999999987777
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC-------CCcEEEEEEcCCCCEEEEEecCC--
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK-- 551 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~~-- 551 (1091)
..+|...|.+++|++ ++.+|++|+.||.|++||.+ +.....+..+ ...+.+++|++++.++++.....
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999965 67899999999999999998 4444433322 23789999999988886654321
Q ss_pred -CCceEEEEEecCCce-----eeEEEecc----cccccceEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 001367 552 -EGESFLVEWNESEGA-----IKRTYQGL----QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDM 607 (1091)
Q Consensus 552 -~~~~~i~iwd~~~~~-----~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~ 607 (1091)
+....+++|++.... ....+... ...+.+...+.+-++.+.+++++ ..+.|.+...
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112358999987542 11222111 01112233344447777777655 3444555553
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-18 Score=189.45 Aligned_cols=282 Identities=11% Similarity=0.061 Sum_probs=193.3
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCC-CccEEEEEECCCCCEEEEE-E
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVA-Y 415 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~las~-~ 415 (1091)
+.++++++++ ++++++.+++|.+||+.+++.+.. +..+ ...+..++|+|||++++++ .
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~ 62 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNN 62 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEET
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeC
Confidence 3567888886 778999999999999999987653 2212 2257789999999976554 5
Q ss_pred CCCEEEEEEeeCCcccceeEEEe-cc-----ccCeeEEEEcCCCCceEEEEeeCC------------CcEEEEeCCCCce
Q 001367 416 SKHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR 477 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~-~h-----~~~v~~~~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~ 477 (1091)
.++.|.+||+.+++... .+. .+ ...+..++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 63 ~~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 137 (349)
T 1jmx_B 63 HYGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 137 (349)
T ss_dssp TTTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred CCCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccc
Confidence 68899999999886543 233 22 23478999999999 66666654 8999999998543
Q ss_pred ---eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC------------------------
Q 001367 478 ---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------ 530 (1091)
Q Consensus 478 ---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------ 530 (1091)
+..+. +...+.+++|++ ++. +++++ +.|.+||..+++....+.....
T Consensus 138 ~~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 138 AKPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp BCCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred cceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence 34443 333577788854 666 55543 4499999988776665543310
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEE-EecccccccceEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 001367 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~v~~~~-~~~~l~~~s~dg~i~iwd~~ 608 (1091)
....+++++++........ ....+..+|..+++.... +.. ....+..++|+| ++++++++ ++.|.+||+.
T Consensus 212 ~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~ 283 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFAD---LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLK 283 (349)
T ss_dssp EEEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEE---CSSCEEEEEECSSCTTEEEEE--ESEEEEEETT
T ss_pred eeeeeeecCCCcCCccccc---cceeEEEEeccCCcEEeccccc---CCCcceeeEecCCCCCEEEEE--cCeEEEEECc
Confidence 2344666655432211100 011233366665543211 111 235788999999 99999888 8899999999
Q ss_pred CCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccc
Q 001367 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
+++.+..+.... .+..++|+|++++|++++.++.|.+||..+++.+..+.
T Consensus 284 ~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 284 QRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp TTEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred cCeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 999988887543 36789999999999988889999999999887766554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-19 Score=212.64 Aligned_cols=252 Identities=16% Similarity=0.176 Sum_probs=184.6
Q ss_pred CccEEEEEECCCCCEEEEEEC-CCEEEEEEeeCCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEeeC---CCcEEEE
Q 001367 396 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW 470 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~~---d~~i~iw 470 (1091)
..+|.+++|+|||++||+++. ||++.||++.+++.. .+..|. ..+..++|+|| + ++++++. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 468999999999999999887 999999999776532 344555 58999999999 5 6776664 4555665
Q ss_pred eCCC---CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 471 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 471 d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
.+.. +... .+.... .+...+|++++++..+++++.++.. +||+.+++.......+. .+++|||||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5432 3322 443222 3345577777666566666665555 99998876555443332 789999999999988
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeEEEEeCCCCCCCC
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN 625 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1091)
+.+..+...|++||+.+++.. .+..+. ..+..++|+|||+.|+++..++ .|++||+.+++.. .+..+. ..+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~ 240 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDF 240 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cCh
Confidence 765444477999999988765 555555 6789999999999999888888 8999999998877 544332 245
Q ss_pred ceEE--------EccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeee
Q 001367 626 PRIC--------FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 626 ~~v~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
..++ |+|||.++++++.++.+++|++ ++... .....+.++++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~ 290 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVL 290 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEE
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEe
Confidence 5666 9999999999999999999999 54443 23345666776
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-17 Score=204.66 Aligned_cols=364 Identities=10% Similarity=-0.000 Sum_probs=238.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC-CCC--ceEEEccCCCEEEEEECC---------CeEE
Q 001367 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PEN--PRICFNKNGTLLAVIANE---------NRIK 647 (1091)
Q Consensus 580 ~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~v~~s~~~~~l~~~~~d---------g~i~ 647 (1091)
...++.|+|++++++++ |+.|++||+.+++....+..+... ..+ ..++|||||++|+.++.+ +.++
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35578999999888876 999999999999988777665431 122 348999999999999876 5677
Q ss_pred EEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeec
Q 001367 648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 727 (1091)
Q Consensus 648 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 727 (1091)
+||+.+++.. .+..+...+..++| ||||+.++.+ .++.|.+|+...+... .+..
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~---------------------SPdG~~la~~-~~~~i~~~~~~~~~~~---~lt~ 149 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTW---------------------SPVGHKLAYV-WNNDIYVKIEPNLPSY---RITW 149 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEE---------------------CSSTTCEEEE-ETTEEEEESSTTSCCE---ECCS
T ss_pred EEECCCCcEE-EcccCCCcceeeEE---------------------CCCCCEEEEE-ECCeEEEEECCCCceE---EEcC
Confidence 9999988654 35556667888888 7888888777 4588999997654322 2211
Q ss_pred CCccccc-----------------cEEEEEEecCCCeEEEeecC-ceEEEeecCCcccccccceeeccCCccccCCCCCc
Q 001367 728 PSKVKAN-----------------KISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 789 (1091)
Q Consensus 728 ~~~~~~~-----------------~i~~~~~s~dg~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1091)
. ++.. ....+.|||||+.|+....| +.+.+|++..... .
T Consensus 150 ~--g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-----------------~---- 206 (740)
T 4a5s_A 150 T--GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-----------------E---- 206 (740)
T ss_dssp C--CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS-----------------T----
T ss_pred C--CCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC-----------------C----
Confidence 1 1221 22358999999999888765 4477776532110 0
Q ss_pred eeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccC---ce--eEEEec------CCCCCeEEEEEcCCCCcEE
Q 001367 790 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK--TILTIM------PPSPTATSLAFNPHDNNVI 858 (1091)
Q Consensus 790 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~---~~--~~~~~~------~~~~~i~~l~~s~~~~~~l 858 (1091)
..+...+..+.+.+.|.... ..+|.+||+.+ ++ ....+. ++...+..++|+| |++++
T Consensus 207 --------~~~~~~~~~~~yp~~G~~~~---~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~ 274 (740)
T 4a5s_A 207 --------SLQYPKTVRVPYPKAGAVNP---TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERIS 274 (740)
T ss_dssp --------TCSSCEEEEEECCBTTSCCC---EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEE
T ss_pred --------CCCCCcceeecCCCCcCcCC---eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEE
Confidence 01334556677777664311 23689999998 73 233333 2667799999999 78866
Q ss_pred EEEeC----CCeEEEEeccCcc----ee--eee--ccccCCeE-----EEEECCCCCEEE-EEeC-C--CcEEEEEcCCC
Q 001367 859 AIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT-----GLVFSDALNILV-SSGG-D--AQIFVWDVDGW 917 (1091)
Q Consensus 859 a~g~~----dg~i~iwd~~~~~----~~--~~l--~~h~~~V~-----~l~~spdg~~la-s~s~-D--g~i~vwd~~~~ 917 (1091)
+.... +..|++||+.+++ +. ..+ .+|.+.|. .++|||||+.|+ ..+. + ..|++||+.++
T Consensus 275 ~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 275 LQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp EEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred EEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 65533 3479999999987 32 222 45665554 789999999887 6654 3 36888998875
Q ss_pred ceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-Eec-----C--eEEEEEcCCcceeeeeec---CCccCEEEEEEe
Q 001367 918 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--HLAIYEAEELTCLKQWFP---ISSVPISQATFS 986 (1091)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d-----~--~i~vwd~~~~~~~~~~~~---~h~~~v~~v~fs 986 (1091)
.. .+...+.. .+..+. ++|++.|+. +.. + .|+..++..+.....+.. +....+..+.||
T Consensus 355 ~~-----~~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S 424 (740)
T 4a5s_A 355 DC-----TFITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFS 424 (740)
T ss_dssp SC-----EESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEEC
T ss_pred ce-----EecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEEC
Confidence 52 22233322 244443 355777765 433 2 455555554443212221 124578899999
Q ss_pred eCCCEEEEEEcC---CcEEEEeCCCCceEEEee
Q 001367 987 CDCRMVFTSFVD---GTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 987 ~dg~~l~t~~~d---g~v~iwd~~~~~~~~~~~ 1016 (1091)
|||++++..... ..+.+++..+++....+.
T Consensus 425 ~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 425 KEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp TTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 999987755543 368888988887654443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-17 Score=185.96 Aligned_cols=299 Identities=9% Similarity=0.007 Sum_probs=191.5
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE-ECCCeEEEEECCCCCeeccccc
Q 001367 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 584 v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
+++++++..+++++.++.|++||..+++.+..+..+.. ..+..++|+|++++++++ ..++.|.+||+.+++....+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45778888899999999999999999999888876541 136789999999876555 4688999999887644332211
Q ss_pred ccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEe
Q 001367 663 LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 742 (1091)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 742 (1091)
... ++ .....+..++|+
T Consensus 84 ~~~-----------------------------~~----------------------------------~~~~~~~~~~~s 100 (349)
T 1jmx_B 84 SSV-----------------------------PG----------------------------------EVGRSMYSFAIS 100 (349)
T ss_dssp CCS-----------------------------TT----------------------------------EEEECSSCEEEC
T ss_pred ccc-----------------------------cc----------------------------------cccccccceEEC
Confidence 000 00 001112345566
Q ss_pred cCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCC
Q 001367 743 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 822 (1091)
Q Consensus 743 ~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg 822 (1091)
|+|++++++..+.... ...+ ...++
T Consensus 101 pdg~~l~~~~~~~~~~-----------------------------------------------------~~~~--~~~~~ 125 (349)
T 1jmx_B 101 PDGKEVYATVNPTQRL-----------------------------------------------------NDHY--VVKPP 125 (349)
T ss_dssp TTSSEEEEEEEEEEEC-----------------------------------------------------SSCE--EECCC
T ss_pred CCCCEEEEEccccccc-----------------------------------------------------cccc--ccCCC
Confidence 6666555544321000 0000 01147
Q ss_pred eEEEEEccCcee---EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccC-------------
Q 001367 823 VISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK------------- 886 (1091)
Q Consensus 823 ~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~------------- 886 (1091)
.|.+||+.+++. +..+. +...+.+++|+| +++ +++++. .|++||+.+++.+..+..+..
T Consensus 126 ~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T 1jmx_B 126 RLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 200 (349)
T ss_dssp EEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred eEEEEECCCccccceeeecc-CCCcccceeECC-CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceee
Confidence 899999998543 33343 334688999999 777 555543 499999999988776654320
Q ss_pred -----------CeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcC-CCCEEEEE
Q 001367 887 -----------RVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV 953 (1091)
Q Consensus 887 -----------~V~~l~~spdg~~las~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~-dg~~la~~ 953 (1091)
....+++++|+....... ....+..++..+++...... .. .. ..+..++|+| ||++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~---~~~~~~~~sp~dg~~l~~~ 273 (349)
T 1jmx_B 201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF-AD---LT---ELYFTGLRSPKDPNQIYGV 273 (349)
T ss_dssp CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE-EE---CS---SCEEEEEECSSCTTEEEEE
T ss_pred ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc-cc---CC---CcceeeEecCCCCCEEEEE
Confidence 344567776653211100 01112224554443221111 11 11 2577999999 99999988
Q ss_pred ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 954 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 954 ~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|.+||+.+++.+..+.
T Consensus 274 -~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 274 -LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp -ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred -cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 899999999999887765433 356789999999999888889999999999999887765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-17 Score=181.70 Aligned_cols=249 Identities=9% Similarity=0.103 Sum_probs=168.7
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEcc-CceeEEEecC-CCCCeEEEEEcCCCCc--EEEEEe-------------CC
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNN--VIAIGM-------------DD 864 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~~~~--~la~g~-------------~d 864 (1091)
..+..++++|||++|++++.+.|.+|++. +++....... ..+....++|+| +++ +++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46788999999999988885599999997 7776543321 112356789999 787 455553 68
Q ss_pred CeEEEEecc-Ccceeeeec----cccCCeEEEEECCCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeeccCCCcCCCCC
Q 001367 865 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS 937 (1091)
Q Consensus 865 g~i~iwd~~-~~~~~~~l~----~h~~~V~~l~~spdg~~las~s~-Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~ 937 (1091)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|++. +++......+.... +. ..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---DH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---CC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---CC
Confidence 999999997 466544433 24567999999999999887764 6799999998 66543222222111 11 24
Q ss_pred ceEEEEcCCCCEEEEEe--cCeEEEEEcC--Ccceee---ee--ec----CCcc------CEEEEE-EeeCCCEEEEEEc
Q 001367 938 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV 997 (1091)
Q Consensus 938 i~~l~fs~dg~~la~~~--d~~i~vwd~~--~~~~~~---~~--~~----~h~~------~v~~v~-fs~dg~~l~t~~~ 997 (1091)
+..++|+|||++|+++. ++.|.+|++. +++... .+ .. +|.. .+..++ |+|||++|++++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78999999999998753 5789999865 555421 11 11 1222 588999 9999999887765
Q ss_pred CC------cEEEEeCC-CCceEEEeecccccCCCCcccccceeEEEeCCC--CCCeEEEEecC-CcEEEEecCCC
Q 001367 998 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1062 (1091)
Q Consensus 998 dg------~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~g~~d-g~v~~w~~~~~ 1062 (1091)
+. +|.+|++. +|+............. .. ..++|+|. |+++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~-----~~--~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-----GG--HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-----CT--TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC-----Cc--ccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33 89999996 6664432110111111 11 23567884 47888888765 89999998554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-18 Score=191.37 Aligned_cols=294 Identities=11% Similarity=0.018 Sum_probs=197.9
Q ss_pred ecCCCccEEE-----EEECCCCCEEEEEEC-CC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC
Q 001367 392 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1091)
Q Consensus 392 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~ 463 (1091)
+..|...... .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5566666665 899999999999987 66 48888988876433 2335555566789999999 7888888
Q ss_pred CCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEe----------------------cCCeEEEEecCCCCc
Q 001367 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA 521 (1091)
Q Consensus 464 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~ 521 (1091)
++.|++||+.+++....+..+...+....+..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877776666666555554467777776432 346799999988754
Q ss_pred eeeecCCCCcEEEEEEcC-CCCEEEEEecCCC--CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC
Q 001367 522 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1091)
Q Consensus 522 ~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~ 598 (1091)
... ..+...+..+.|+| ||+.|+.+..... ....|+++|..++.......... ...+...+|+|||+.|+..+.
T Consensus 181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence 433 34455688999999 9999988765321 14468888887665433332221 125778899999998866442
Q ss_pred -C----CeEEEEECCCCeeEEEEeCCCC--C-CCCceEEEccCCCEEEEE---------ECCCeEEEEECCCCCeecccc
Q 001367 599 -D----HVIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 599 -d----g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
+ +.|++||+.+++.......... . ......+|+|||+.|+.. ..+..|++||+.+++. ..+.
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~ 336 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVA 336 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEec
Confidence 2 2499999999875433322210 0 012334799999988864 4467899999988754 3333
Q ss_pred cccc-----------cceeeeeccccccccccccCCcccCCCCCCCCCcccccc-ccccccccccc
Q 001367 662 VLSD-----------NLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVE-AENKSEVEKPL 715 (1091)
Q Consensus 662 ~~~~-----------~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~-~d~~i~~w~~~ 715 (1091)
.+.. .+..++| +|||+.++..+ .++...+|.++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~---------------------spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 337 RHDTSWKVFEGDRQVTHPHPSF---------------------TPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ECCCCCCCBTTBSSTTCCCCEE---------------------CTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccCcccccccccccCCCCccC---------------------CCCCCEEEEEecCCCceeEEEEE
Confidence 3333 2444455 78887776443 46677777654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-16 Score=175.36 Aligned_cols=297 Identities=11% Similarity=0.116 Sum_probs=201.3
Q ss_pred CCCceEEEEE-----cCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC--
Q 001367 344 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-- 416 (1091)
Q Consensus 344 pdg~~llasg-----~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-- 416 (1091)
+++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|+|||++|+++..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~ 71 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH 71 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence 3555554443 2378999999999987653 3334444 8999999999999862
Q ss_pred --------CCEEEEEEeeCCcccceeEEEec---cccCeeEEEEcCCCCceEEEEee--CCCcEEEEeCCCCceeEE-ec
Q 001367 417 --------KHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE 482 (1091)
Q Consensus 417 --------d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~-~~ 482 (1091)
++.|.+||..+++.+..+..... +......++|+|||+ +|+++. .+++|.+||+.+++.+.+ +.
T Consensus 72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 56899999988776553322111 224567899999999 555554 368999999999998887 54
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-------eecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
... . ..+.+.|.+ ...+++.+.||.+.+|+++...... .+.....+ ..+.+++++..++.... ++
T Consensus 150 ~~~-~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~ 221 (361)
T 2oiz_A 150 AAG-C-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG 221 (361)
T ss_dssp GTT-E-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred CCC-c-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence 322 1 223344432 2577888999999999886533322 11122222 23344677777766654 45
Q ss_pred EEEEEecCCcee--eEEEeccc---cc----ccceEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeEEE
Q 001367 556 FLVEWNESEGAI--KRTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 556 ~i~iwd~~~~~~--~~~~~~~~---~~----~~~v~~v~~~~~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~ 615 (1091)
.++++|+..... ...+.... .. ......++|+|++++++++.. .+.|.+||+.+++.+..
T Consensus 222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 699999875532 22221100 00 011123689999998887643 35899999999999999
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC--Ceecccccccccceeeeecccc
Q 001367 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPIS 676 (1091)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~ 676 (1091)
+..+. +..++|+|||++|+++.. +.|.+||..++ +.+..+.........+++.|++
T Consensus 302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 98764 689999999999998887 99999999999 8887765556666677775443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-17 Score=184.14 Aligned_cols=298 Identities=11% Similarity=-0.003 Sum_probs=193.3
Q ss_pred hheeeecccCCCC-----cEEEEEcCCCceEEEEEcCC--CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC
Q 001367 324 KTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1091)
Q Consensus 324 ~~~~~~l~~h~~~-----V~~v~fspdg~~llasg~~d--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 396 (1091)
...++.|..+... +..++|||||++++++...+ ..|.+||+.+++... +..+.
T Consensus 20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~~ 79 (396)
T 3c5m_A 20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEGK 79 (396)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCSS
T ss_pred CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecCC
Confidence 3344555554333 88899999999766665543 468888998886543 22232
Q ss_pred cc-EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeE-------------------EEEcCCCCce
Q 001367 397 VS-VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQI 456 (1091)
Q Consensus 397 ~~-V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------~~~s~d~~~~ 456 (1091)
.. ...+.|||||++|+.++.++.|++||+.+++... ....+...... +.|+|+++.
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~- 155 (396)
T 3c5m_A 80 GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW- 155 (396)
T ss_dssp CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH-
T ss_pred CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc-
Confidence 33 3347899999999999999999999998876432 22223332222 356788873
Q ss_pred EEEEe-----eCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC------CeEEEEecCCCCceeee
Q 001367 457 SVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDY 525 (1091)
Q Consensus 457 ~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~ 525 (1091)
++.. ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+.........
T Consensus 156 -~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 156 -EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp -HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred -eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence 3332 45678999999988765444 46667888888542 45556655543 35888888665433333
Q ss_pred cCC-CCcEEEEEEcCCCCEEEEEecC-CCCceEEEEEecCCceeeEEEecccccccceEEEEEcC-CCCEEEEEe-----
Q 001367 526 DAP-GLGCTRMAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG----- 597 (1091)
Q Consensus 526 ~~~-~~~i~~~~~s~d~~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~s----- 597 (1091)
... ...+..++|+|||++|+..+.. +.....|++||+.+++....... . ... +.|+| +++.+++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p~ 306 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAPV 306 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC--
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcce
Confidence 321 3357889999999988776542 21225599999998875443322 1 123 88999 999888754
Q ss_pred -----------CCCeEEEEECCCCeeEEEEeCCCCC--------CCCceEEEccCCCEEEEEEC-CCe--EEEEECCCC
Q 001367 598 -----------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENR--IKILETPES 654 (1091)
Q Consensus 598 -----------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~--i~iwd~~~~ 654 (1091)
.++.|++||+.+++........... ..+..++|+|||+.|+..+. ++. |+.+++.++
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 307 DVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp --------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 3478999999888754333222110 01466899999998888775 444 444455544
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-16 Score=171.73 Aligned_cols=304 Identities=10% Similarity=0.094 Sum_probs=206.1
Q ss_pred cCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEec------CCCCceEEEEEecCCceeeEEEecccc---c
Q 001367 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEGAIKRTYQGLQL---Q 577 (1091)
Q Consensus 507 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~------~~~~~~~i~iwd~~~~~~~~~~~~~~~---~ 577 (1091)
.|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..+++.+..+..... +
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999888877766655444 8999999999998763 122367799999999988887764310 1
Q ss_pred ccceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeEEE-EeCCCCCCCCceEEEccCC-CEEEEEECCCeEEEEECCC
Q 001367 578 HNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPE 653 (1091)
Q Consensus 578 ~~~v~~v~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~ 653 (1091)
......++++|+|++++++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..+++.+.||.+.+|+...
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 234667899999999999863 68999999999998887 65432 2335677765 6778888999999998764
Q ss_pred -CCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccc
Q 001367 654 -SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 732 (1091)
Q Consensus 654 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 732 (1091)
++...... ...+|+...
T Consensus 183 ~g~~~~~~~----------------------------------------------~~~~~~~~~---------------- 200 (361)
T 2oiz_A 183 DGKVASQSR----------------------------------------------SKQMFSVKD---------------- 200 (361)
T ss_dssp TSSEEEEEE----------------------------------------------CCCCSCTTT----------------
T ss_pred CCcEeeecc----------------------------------------------ccceEcCCC----------------
Confidence 32221000 001111110
Q ss_pred cccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC
Q 001367 733 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812 (1091)
Q Consensus 733 ~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 812 (1091)
.. ..+.+++++..++..+.++.+.++|+....... ...|........ ... -.......++++||
T Consensus 201 -~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~--~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 201 -DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN--WVPGGYNLVGLHRA 264 (361)
T ss_dssp -SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT--CEECCSSCEEEETT
T ss_pred -Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc--cccCCeeEEEEecC
Confidence 00 011224556666666667788888864322100 000111000000 000 00111223789999
Q ss_pred CCEEEEEe------------CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc--cee
Q 001367 813 DAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVI 878 (1091)
Q Consensus 813 g~~la~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~--~~~ 878 (1091)
++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| ++++|++++. +.|.+||..++ +.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceee
Confidence 88877653 2479999999999999998776 99999999 8888888886 99999999999 999
Q ss_pred eeeccccCCeEEEEECCCCC
Q 001367 879 SKLEGHSKRVTGLVFSDALN 898 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~ 898 (1091)
.++..+......++++|||+
T Consensus 341 ~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 341 RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEETTSCSSEEEEEECCCSC
T ss_pred EEeccCCCCcEEEEecCCCC
Confidence 88877777889999999986
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=176.79 Aligned_cols=250 Identities=9% Similarity=0.057 Sum_probs=172.2
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEee-CCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-----------
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 462 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~----------- 462 (1091)
+...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 33568899999999999999888 89999997 765432 1122111 236679999999853455553
Q ss_pred --CCCcEEEEeCC-CCceeEEec----CCCcceEEEeecccCCceEEEEEe-cCCeEEEEecC-CCCcee--eec--CCC
Q 001367 463 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG 529 (1091)
Q Consensus 463 --~d~~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~--~~~--~~~ 529 (1091)
.++.+.+|++. +|+....+. .+...+.+++|+ ++|++++++. .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s--pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD--PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC--CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 466554443 245678888885 4677777665 46899999998 554322 232 235
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC--CceeeE---EEecccc----ccc------ceEEEE-EcCCCCEE
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI 593 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~v~-~~~~~~~l 593 (1091)
..+..++|+|||++++++.. .++.|.+|++. +++... .+..... +.. .+..++ |+|||+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 56889999999999988763 24568887654 565432 2222110 011 478899 99999998
Q ss_pred EEEeCC-C-----eEEEEECC-CCeeEEE---EeCCCCCCCCceEEEcc---CCCEEEEEECC-CeEEEEECCCC
Q 001367 594 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 654 (1091)
Q Consensus 594 ~~~s~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iwd~~~~ 654 (1091)
+++..+ + .|.+|++. +++.... ..... .....++|+| ||++|+++..+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876532 2 89999986 6665432 22222 2457889999 89999999864 89999998765
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-14 Score=167.14 Aligned_cols=329 Identities=11% Similarity=0.102 Sum_probs=223.9
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeEEEEeCCCCCCCCceEEEc
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
++.|.++|..+++.+..+.... .+..+.|+||++++++++.++.|.+||+. +++.+..+..... ...++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~----~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---ARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---EEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCCC----CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---CceeEEc
Confidence 6679999999999988887533 56789999999999999999999999996 8888888775432 4789999
Q ss_pred ----cCCCEEEEEEC-CCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccc
Q 001367 632 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAE 706 (1091)
Q Consensus 632 ----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d 706 (1091)
|||++++++.. ++++.++|..+.+.+..+......+....+
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~---------------------------------- 294 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY---------------------------------- 294 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE----------------------------------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc----------------------------------
Confidence 69998887765 599999998887666544321100000000
Q ss_pred cccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE-EeecCceEEEeecCCcccccccceeeccCCccccCC
Q 001367 707 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 785 (1091)
Q Consensus 707 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1091)
.....+..+..++++..++ .....|.+.++|+.....
T Consensus 295 ------------------------~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~------------------ 332 (567)
T 1qks_A 295 ------------------------HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN------------------ 332 (567)
T ss_dssp ------------------------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE------------------
T ss_pred ------------------------cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc------------------
Confidence 0122566777888766444 444568888888643211
Q ss_pred CCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecC-----CCCCeEEEEEcCCCCcEE
Q 001367 786 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVI 858 (1091)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~l 858 (1091)
+....+ ........+.|+|||++++++. +++|.++|+.+++.+..+.. |.+.-.. -++|+++.+.
T Consensus 333 ----~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~ 404 (567)
T 1qks_A 333 ----LKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVW 404 (567)
T ss_dssp ----EEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEE
T ss_pred ----ceeeee---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEE
Confidence 101011 1233456789999999998886 58999999999998876653 2221112 2578345555
Q ss_pred EEEe-CCCeEEEEeccC-------cceeeeeccccCCeEEEEECCCCCEEEEEeC-------CCcEEEEEcCCCce---e
Q 001367 859 AIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI---Q 920 (1091)
Q Consensus 859 a~g~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~las~s~-------Dg~i~vwd~~~~~~---~ 920 (1091)
+++. .++.|.++|..+ .+.+.++......-..+..+||+++|..... ..+|.|+|+.+.+. .
T Consensus 405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 5553 468999999987 5667777655444345788999999887653 35899999987511 1
Q ss_pred ee-eeeecc--CCCcCCCCCceEEEEcCCCCEEEEE------ecCeEEEEEcCCcceeeeee
Q 001367 921 TC-RSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 973 (1091)
Q Consensus 921 ~~-~~~~~~--~~~~~~~~~i~~l~fs~dg~~la~~------~d~~i~vwd~~~~~~~~~~~ 973 (1091)
.. ..+... .+.......+..+.|+|+|+++.++ .++.|.|+|.++++....+.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 11 222210 0000011358899999999998774 26889999999998877643
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.7e-16 Score=187.49 Aligned_cols=294 Identities=10% Similarity=0.001 Sum_probs=194.8
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEE--cCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE-----
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN----- 400 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg--~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~----- 400 (1091)
..+.+|...|..++|++++- +++++ +.++...||....+..... +..|...+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~ 76 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE 76 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence 34678899999999999875 45666 5578899999654443332 444555555
Q ss_pred ----EEEEC--CCCCE-EEEEEC-CCEEEEEEee--C-CcccceeEEEec-----cccCeeEEEEcCCCCceEEEEeeCC
Q 001367 401 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD 464 (1091)
Q Consensus 401 ----~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~~~l~s~~~d 464 (1091)
..+|+ |||++ |+.++. +..|.+|++. + ++ .+ .+.. |...+..++|+|||+ .|++++.+
T Consensus 77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~ 150 (662)
T 3azo_A 77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE 150 (662)
T ss_dssp TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence 55565 99999 887654 4556666665 2 33 22 3444 667889999999999 67766665
Q ss_pred ----------CcEEEEeCCC------CceeEEec-CCCcceEEEeecccCCceEEEEEecC--------CeEEEEecC-C
Q 001367 465 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYD-S 518 (1091)
Q Consensus 465 ----------~~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~ 518 (1091)
..|++||+.+ ++ ...+. .+...+..++| ++||++|+.++.+ ..|++||++ +
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 5899999988 54 45555 56667777777 5678889887755 379999998 4
Q ss_pred C---CceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccccccc-----ceEEEEEcCCC
Q 001367 519 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK 590 (1091)
Q Consensus 519 ~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~v~~~~~~ 590 (1091)
+ ........+...+..++|+|||++++++.. ++...|++||..+++.......+..... .+..++|+|++
T Consensus 228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence 5 233333344678899999999995555433 3345789999877776544443321000 15678899999
Q ss_pred CEEEEEeCCCeEEEE--ECCCCeeEEEEeCCCCCCCCceEEEccCCCE--EEEEECCC--eEEEEECCCCCee
Q 001367 591 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSV 657 (1091)
Q Consensus 591 ~~l~~~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iwd~~~~~~~ 657 (1091)
..+++++. +.+++| |..+++ +..+..+.. .+..+ +++++.. ++.++.+. .|+++++.+++..
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~--~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPWT--EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTE-EEECCSSCC--EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEEc-CccEEEEEECCCCc-EEEecCCCC--eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 99999988 999999 666665 455554432 34544 1444443 33444444 4666676666543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-13 Score=160.58 Aligned_cols=325 Identities=13% Similarity=0.142 Sum_probs=219.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC--CCCeecccccccc
Q 001367 588 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSD 665 (1091)
Q Consensus 588 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~ 665 (1091)
|.+..+++...++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. +.+.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence 334456667789999999999999999887543 35689999999999999999999999985 443332221
Q ss_pred cceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEe---
Q 001367 666 NLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN--- 742 (1091)
Q Consensus 666 ~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--- 742 (1091)
.......++|+
T Consensus 238 ------------------------------------------------------------------~G~~P~~ia~s~~~ 251 (567)
T 1qks_A 238 ------------------------------------------------------------------IGSEARSIETSKME 251 (567)
T ss_dssp ------------------------------------------------------------------CCSEEEEEEECCST
T ss_pred ------------------------------------------------------------------cCCCCceeEEcccc
Confidence 01234578899
Q ss_pred -cCCCeEEEeec-CceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCC------CC-CCCeeEEEecCCC
Q 001367 743 -NGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS------NS-QEAVPCFALSKND 813 (1091)
Q Consensus 743 -~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~v~~l~~s~dg 813 (1091)
|||++++++.. ++.+.++|..+.+. +........ .| ...+..+..++++
T Consensus 252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~----------------------~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 252 GWEDKYAIAGAYWPPQYVIMDGETLEP----------------------KKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCE----------------------EEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred CCCCCEEEEEEccCCeEEEEECCCCcE----------------------EEEEeccccccccccccCCCceEEEEEcCCC
Confidence 69998887775 48888888543221 111111100 01 2367889999988
Q ss_pred CEEEEEe--CCeEEEEEccCceeE--EEecCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEeccCcceeeeecc-----
Q 001367 814 AYLFSAS--GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG----- 883 (1091)
Q Consensus 814 ~~la~~~--dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~i~iwd~~~~~~~~~l~~----- 883 (1091)
..++... .|.|.++|..+.+.+ ..+. .......+.|+| ++++++++. .++.|.++|+.+++.+..+.-
T Consensus 310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P 387 (567)
T 1qks_A 310 PEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP 387 (567)
T ss_dssp SEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred CEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence 7666654 599999998865432 2222 344677899999 777766554 678999999999987765543
Q ss_pred ccCCeEEEEECCCCCEE-EEEe-CCCcEEEEEcCCCc-----eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe--
Q 001367 884 HSKRVTGLVFSDALNIL-VSSG-GDAQIFVWDVDGWG-----IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-- 954 (1091)
Q Consensus 884 h~~~V~~l~~spdg~~l-as~s-~Dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~-- 954 (1091)
|.+.-.. .++|++..+ +++. .++.|.++|..+.. ......+....+ .-..+.++|++++|.+..
T Consensus 388 hpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~~ 460 (567)
T 1qks_A 388 HPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDATL 460 (567)
T ss_dssp CCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECTT
T ss_pred CCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecCC
Confidence 4332222 257875544 4443 46899999998732 111122222211 224578899999999854
Q ss_pred ------cCeEEEEEcCCc-----cee-eeee-------cCCccCEEEEEEeeCCCEEEEEEc-----CCcEEEEeCCCCc
Q 001367 955 ------ETHLAIYEAEEL-----TCL-KQWF-------PISSVPISQATFSCDCRMVFTSFV-----DGTLSIHEASNLE 1010 (1091)
Q Consensus 955 ------d~~i~vwd~~~~-----~~~-~~~~-------~~h~~~v~~v~fs~dg~~l~t~~~-----dg~v~iwd~~~~~ 1010 (1091)
.++|.++|+.+. ... ..+. ......+..+.|++||+++.++.. ++.|.|+|..+++
T Consensus 461 ~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 461 NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 458999999877 211 1111 112457899999999998776643 7899999999999
Q ss_pred eEEEee
Q 001367 1011 VQCRIL 1016 (1091)
Q Consensus 1011 ~~~~~~ 1016 (1091)
+...+.
T Consensus 541 ~~~~i~ 546 (567)
T 1qks_A 541 LKHVIK 546 (567)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 987775
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-15 Score=164.49 Aligned_cols=262 Identities=10% Similarity=0.113 Sum_probs=176.6
Q ss_pred CcEEEEEcCCCceEEEEEc--------CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 336 SPMSMDFHPVQHTLLLVGT--------NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~--------~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
.+..+++ ||++++.+.. .++.|.+||+.+++... + ..+.+++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 5677788 8986655431 25779999998876432 2 46788999999
Q ss_pred CCEEEEEECC---C--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC-------------------
Q 001367 408 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------------- 463 (1091)
Q Consensus 408 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~------------------- 463 (1091)
|++||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceeec
Confidence 9999988653 3 47778887765332 233334 99999999999 4555442
Q ss_pred --------CCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCC-------eEEEEecCCCCceeeecCC
Q 001367 464 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP 528 (1091)
Q Consensus 464 --------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~ 528 (1091)
...|.+||+.+++.+..+.. . .+..++|+ +++ +++++..++ ...+|.++ ......+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEeccC
Confidence 25799999998887455544 3 77788885 566 777665542 44555555 3333333333
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCC----CceEEEEEecCCceeeEEEecccccccceEE-EEEcCCCCEEEEEeCCCeEE
Q 001367 529 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK 603 (1091)
Q Consensus 529 ~~~i~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-v~~~~~~~~l~~~s~dg~i~ 603 (1091)
..+..+ +|||++|+..+.... ....|++|| +++.......+. ..+.. +.|+ ++ .+++++.++.++
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 444443 999999988775331 245789999 555544444433 56775 8999 88 888899999999
Q ss_pred EEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeE-EEEECC
Q 001367 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP 652 (1091)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iwd~~ 652 (1091)
+| +.+++....... ...+..++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444433 23578899999 677777776654 677665
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-16 Score=174.54 Aligned_cols=244 Identities=9% Similarity=-0.010 Sum_probs=165.0
Q ss_pred EEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccceeEEEeccccC-eeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 399 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
+.+++|||||++||.+... ..|.+||+.+++.. .+..+... ...+.|+|||+ .|+.++.++.|++||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----QLTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----ECCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----EeecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence 6788999999999887643 37888898887532 23333333 33488999999 788888888999999998
Q ss_pred CceeEEecCCCcceEE---Eee--------------cccCCceEEEEE-----ecCCeEEEEecCCCCceeeecCCCCcE
Q 001367 475 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC 532 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~---~~~--------------~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i 532 (1091)
++.......+...... +++ ..++++..++.. ..+..|.+||+.+++..... .+...+
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~ 190 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL 190 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence 8766555544432222 211 123344444433 35667999999886654443 345578
Q ss_pred EEEEEcC-CCCEEEEEecCCCC--ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC-----CeEEE
Q 001367 533 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI 604 (1091)
Q Consensus 533 ~~~~~s~-d~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d-----g~i~i 604 (1091)
..+.|+| +++.|+.++..... ...|++||..+++......... ...+..++|+|+|++|+.++.+ +.|++
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 8999999 88888777642210 1568999987765433332111 2357889999999988776543 45999
Q ss_pred EECCCCeeEEEEeCCCCCCCCceEEEcc-CCCEEEEEE----------------CCCeEEEEECCCCCe
Q 001367 605 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS 656 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~~~ 656 (1091)
||+.+++......... .. +.|+| ||+++++++ .++.|++||+.++..
T Consensus 269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 9999887655443322 23 89999 999888765 347899999987753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-14 Score=176.22 Aligned_cols=250 Identities=11% Similarity=0.007 Sum_probs=173.4
Q ss_pred eecCCCccEEEEEECCCCCEEEEE--ECCCEEEEEEeeCCcccceeEEEeccccCee---------EEEEc--CCCCceE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQIS 457 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~--~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~~~~s--~d~~~~~ 457 (1091)
.+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~- 93 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL- 93 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-
Confidence 366799999999999887777777 557889999975444333 4556666666 66666 999941
Q ss_pred EEEee-CCCcEEEEeCC--CCceeEEecC-----CCcceEEEeecccCCceEEEEEecC----------CeEEEEecCCC
Q 001367 458 VITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL 519 (1091)
Q Consensus 458 l~s~~-~d~~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~ 519 (1091)
|+.++ .+..|.+|++. ++.....+.. |...+..++|+ +||+.|++++.+ ..|++||+.+.
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 44433 36677777765 2034556655 56778888885 577889888877 57999999872
Q ss_pred -----Cceeeec-CCCCcEEEEEEcCCCCEEEEEecCCC----CceEEEEEecC-Cc---eeeEEEecccccccceEEEE
Q 001367 520 -----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVH 585 (1091)
Q Consensus 520 -----~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~v~ 585 (1091)
.....+. .+...+..++|||||++|+..+.+.. ....|++||+. ++ +......++. ..+..+.
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~ 248 (662)
T 3azo_A 172 AAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAE 248 (662)
T ss_dssp TTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEE
T ss_pred ccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceE
Confidence 2333444 44567888999999999998775432 23679999998 57 4444444433 6789999
Q ss_pred EcCCCCEEEEEeCCC--eEEEEECCCCeeEEEEeCCCCC------CCCceEEEccCCCEEEEEECCCeEEEEE
Q 001367 586 FDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 586 ~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
|+|||+.+++++.++ .|++||..+++.......+... ..+..++|+|++++++++.. +.+++|.
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 999999777777788 6777777677655443322211 11456788888888888777 7777774
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-14 Score=158.43 Aligned_cols=249 Identities=12% Similarity=0.094 Sum_probs=180.8
Q ss_pred CCCeeEEEecCCCCEEEEEeCC-------------------------eEEEEEccCceeEEEec-CCCCCeEEEEEcCCC
Q 001367 801 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD 854 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~dg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~ 854 (1091)
-..+.+++++|+|+++++...+ .|.+||..+++.+..+. .+......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4578999999999999887743 69999999999887665 3445789999999 8
Q ss_pred CcEEEEEeCCCeEEEEeccCcc-eeeee---------ccccCCeEEEEECC-CCCEEEEEe-CCCcEEEEEcCCCceeee
Q 001367 855 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC 922 (1091)
Q Consensus 855 ~~~la~g~~dg~i~iwd~~~~~-~~~~l---------~~h~~~V~~l~~sp-dg~~las~s-~Dg~i~vwd~~~~~~~~~ 922 (1091)
++++++...++.|++|+..... .+..+ .++......++++| +|.++++.+ .++.|++|+.+. .....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8888888889999999986542 44544 34555789999999 888888886 689999999544 32211
Q ss_pred eeeecc-----CCCcCCCCCceEEEEcCC-CCEEEE-EecCeEEEEEcCCcceeeeee-cCCccCEEEEEEee------C
Q 001367 923 RSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------D 988 (1091)
Q Consensus 923 ~~~~~~-----~~~~~~~~~i~~l~fs~d-g~~la~-~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~v~fs~------d 988 (1091)
...... .+.. .....++|+|+ |.++++ ..++.|++||..+++.+..+. ..+...+..++|+| +
T Consensus 181 ~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~ 257 (329)
T 3fvz_A 181 WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN 257 (329)
T ss_dssp ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence 100000 0111 24789999999 555555 367799999999888887753 23567888999999 3
Q ss_pred CCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 989 CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 989 g~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
|+..++...+..|++|++.+++.+..+.... ...-.+..++++| ||.++++...++.|++|++...
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 3333333344589999999999887764211 1112356788999 4788999999999999998543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-14 Score=157.76 Aligned_cols=248 Identities=11% Similarity=0.077 Sum_probs=183.2
Q ss_pred CCcEEEEEcCCCceEEEEEcCC------------------------CcEEEEEcCCCCceeeeceeEEeccccccceeee
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~d------------------------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1091)
+.|.+++++|+|+ ++++...+ ++|.+||..+|+.+...
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------- 85 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------- 85 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence 4899999999998 66777766 47999999888865420
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCc-ccceeEEE---------eccccCeeEEEEcC-CCCceEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI 459 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~~~~s~-d~~~~~l~ 459 (1091)
-.++-..+..++++|+|+++++...++.|++|+..+.. .+. .+ .++......++|+| ++. +++
T Consensus 86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 12345678999999999988888888999999986542 222 33 23445789999999 677 677
Q ss_pred Eee-CCCcEEEEeCCCCceeEEecCC----------CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec--
Q 001367 460 TCG-DDKTIKVWDAVTGSRTYSFEGH----------GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-- 526 (1091)
Q Consensus 460 s~~-~d~~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-- 526 (1091)
+.+ .++.|++|| .+|+.+..+... -.....+++++. .+.++++...++.|++|+.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 775 689999999 678877777432 233788888543 26788888899999999998777666653
Q ss_pred CCCCcEEEEEEcCCCCEEEEEec---CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEE
Q 001367 527 APGLGCTRMAYSANGRRLFSCGT---SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d~~~l~~~~~---~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~ 603 (1091)
.....+..++++| +..+.+.+. .......|++||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3455788999999 443333321 012245799999999999888753222346789999999997777778899999
Q ss_pred EEECCC
Q 001367 604 IWDMNK 609 (1091)
Q Consensus 604 iwd~~~ 609 (1091)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-14 Score=150.59 Aligned_cols=241 Identities=10% Similarity=0.092 Sum_probs=173.9
Q ss_pred CCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecC------CCCCeEEEEEc-CCCCcEEEEEeC-CCeEEEE
Q 001367 800 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY 870 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~~~~~la~g~~-dg~i~iw 870 (1091)
+-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 556789999999999888765 6899999987 666665542 33578899994 6 7777776643 8899999
Q ss_pred eccCcceeeeec-cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCE
Q 001367 871 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 949 (1091)
Q Consensus 871 d~~~~~~~~~l~-~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 949 (1091)
| .+++.+..+. .+...+.+++++|+|+++++...++.|.+||..... . ..+.. .+.. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~--~~~~~-~~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-L--HKFGC-SKHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-E--EEEEC-TTTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-E--EEeCC-CCcc---CCcEEEEECCCCCE
Confidence 9 5677666664 344678999999999988888888999999976422 1 11111 1222 24789999999997
Q ss_pred EEEE-ecCeEEEEEcCCcceeeeeec-CCccCEEEEEEeeCCCEEEEEEcCC-cEEEEeCCCCceEEEeecccccCCCCc
Q 001367 950 FLLV-HETHLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1026 (1091)
Q Consensus 950 la~~-~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~v~fs~dg~~l~t~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~ 1026 (1091)
+++. .++.|++||.. ++.+..+.. ++...+..++++++|+++++...++ .|.+|+. +++.+..+....
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~------- 248 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV------- 248 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-------
Confidence 7774 57899999974 555554322 2236789999999999888887775 9999995 566665554211
Q ss_pred ccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 1027 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1027 ~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
....+..++++| +++++++ +.|++|++|++...
T Consensus 249 -~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 -KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 112355788999 4776666 67999999998553
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-10 Score=137.89 Aligned_cols=587 Identities=9% Similarity=0.038 Sum_probs=339.8
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..|+++.-.++|.. -.|+.+| +..+|- .... .+...... . -.-....|.++...++|.+.+ |
T Consensus 43 n~v~~I~qD~~G~l--WigT~~G-L~ryDG---~~f~-----~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi-g 104 (795)
T 4a2l_A 43 STVFSIDQDKRGNM--WFATYDG-VNKYDG---YAFT-----VYQHNEDD----P--NSIANDISRIVKTDSQGRVWI-G 104 (795)
T ss_dssp SCEEEEEECTTSCE--EEEETTE-EEEECS---SCEE-----EECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-E
T ss_pred ceeEEEEEcCCCCE--EEeecCc-CcccCC---CceE-----EEeCCCCC----C--CcccccceeEEEECCCCCEEE-E
Confidence 38999999999963 3455555 566663 2211 11100000 0 000246799999999987665 4
Q ss_pred ECCCEEEEEEeeCCcccceeEEEecccc----CeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC-Ccc-e
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V 488 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~-v 488 (1091)
+.+| +..||..+++.. .+..... .|.++...++|. +.+ ++. +.|..||..+++.......+ ... |
T Consensus 105 T~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i 175 (795)
T 4a2l_A 105 TRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI 175 (795)
T ss_dssp ESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred eCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence 4555 899998765421 2222111 288898888887 333 444 45889997766543211111 122 7
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeee-cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
.++... .++. +..++.++-+..|+..+....... ......|.++...+++...+..... -+..||..+++.
T Consensus 176 ~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~-----Gl~~~~~~~~~~ 247 (795)
T 4a2l_A 176 ASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGA-----GLFLINPKTKEI 247 (795)
T ss_dssp EEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSS-----CEEEEETTTTEE
T ss_pred EEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCC-----CeEEEeCCCCeE
Confidence 777663 3444 444666556888887665433221 1234568888888888766554221 288999887765
Q ss_pred eEEEecc----cccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-----CCCCCCceEEEccCCCEEE
Q 001367 568 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 568 ~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~ 638 (1091)
....... ......|.++...++|.. ..|+.+ .|.+||..+++........ -....|.++...++|. |.
T Consensus 248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 324 (795)
T 4a2l_A 248 KNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW 324 (795)
T ss_dssp EEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred EEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence 4332211 112356999998888764 445555 5899998887654432211 1123578888888876 55
Q ss_pred EEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccC
Q 001367 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFAR 718 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~ 718 (1091)
+|+.++-|..|+..+.... .+.. .+.
T Consensus 325 igt~~~Gl~~~~~~~~~~~-~~~~-------------------------------~~~---------------------- 350 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFK-NIRN-------------------------------IPY---------------------- 350 (795)
T ss_dssp EEESSSCEEEECGGGGSSE-EECC-------------------------------CTT----------------------
T ss_pred EEECCCCeEEeCCCcccce-EEcC-------------------------------CCC----------------------
Confidence 6777777888765432110 0000 000
Q ss_pred CcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCC
Q 001367 719 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 798 (1091)
Q Consensus 719 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1091)
+.......|.++...++|. |-.++.++-+..|+...... +.+....+. ....
T Consensus 351 ---------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~------~~~~ 402 (795)
T 4a2l_A 351 ---------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE------SARG 402 (795)
T ss_dssp ---------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC------------C
T ss_pred ---------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC------cccC
Confidence 0001234688888888887 55566666677776432211 001000000 0000
Q ss_pred CCCCCeeEEEecCCCC-EEEEEeCCeEEEEEccCceeEEEec----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEecc
Q 001367 799 NSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 873 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~-~la~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~ 873 (1091)
-....|.+++..++|+ +.+...++.+..||..+++...-.. .+...|.++...+ ++.+.+ |+.+ -+.+|+..
T Consensus 403 l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~ 479 (795)
T 4a2l_A 403 IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPE 479 (795)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETT
T ss_pred CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCC
Confidence 0245789999999999 5554446789999988876543322 2345789999988 676555 4444 58899988
Q ss_pred Ccceeeeec------cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC
Q 001367 874 SSEVISKLE------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 947 (1091)
Q Consensus 874 ~~~~~~~l~------~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg 947 (1091)
+++...... -+...|.++...++|++.+... . -|..||..++.. .........+.. ...|.++...++|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~~~~~~~~~~l~--~~~i~~i~~d~~g 554 (795)
T 4a2l_A 480 QRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-QKASILPVSNVT--KLFTNCIYEASNG 554 (795)
T ss_dssp TTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-EECCCSCSCGGG--GSCEEEEEECTTS
T ss_pred CCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-EEecCCCCCCCC--CCeeEEEEECCCC
Confidence 765433221 1236799999999998777544 4 488999887553 100000111111 1368899999999
Q ss_pred CEEEEEecCeEEEEEcCCcceeeeeecCC---ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCC
Q 001367 948 TRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1024 (1091)
Q Consensus 948 ~~la~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 1024 (1091)
.+.+++.. .+..||..+++... +...+ ...|.++...++|.+.+++ . +-|..|+..++... .+....-++..
T Consensus 555 ~lWigT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~~ 629 (795)
T 4a2l_A 555 IIWVGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQSN 629 (795)
T ss_dssp CEEEEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSCS
T ss_pred CEEEEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCccc
Confidence 97776554 78899987765432 22111 4568899999999877654 4 45888998876543 34333333332
Q ss_pred CcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 1025 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1025 ~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
.+..-++..++ +| .|..|+.+| +..++...
T Consensus 630 ----~f~~~~~~~~~-~G-~l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 630 ----QFNTASYCRTS-VG-QMYFGGING-ITTFRPEL 659 (795)
T ss_dssp ----CEEEEEEEECT-TS-CEEEEETTE-EEEECGGG
T ss_pred ----cCccCceeECC-CC-eEEEecCCc-eEEEcHHH
Confidence 22223445565 34 566677776 45566543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-10 Score=140.83 Aligned_cols=534 Identities=8% Similarity=0.036 Sum_probs=319.2
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..|.++...++|. | -.|+. +.+..||..+++...... . .......|.++...++|.+.+..
T Consensus 88 n~I~~i~~d~~g~-l-WigT~-~Gl~~yd~~~~~f~~~~~---------------~-~~~~~~~i~~i~~d~~g~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTDSQGR-V-WIGTR-DGLSRYDEEKDIFQNFFY---------------E-KNGKHLQVNGIEEISPEQLLIST 148 (795)
T ss_dssp SCEEEEEECTTSC-E-EEEES-SCEEEEETTTTEEEEECC---------------E-ETTEECCCCEEEEEETTEEEEEE
T ss_pred cceeEEEECCCCC-E-EEEeC-CchheeCCCCCeEEeccc---------------c-ccCCCceEEEEEECCCCCEEEEE
Confidence 4799999999998 4 33444 458999987765432100 0 00000118888888888766644
Q ss_pred ECCCEEEEEEeeCCcccceeEEEecc-ccC-eeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-cCCCcceEEE
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~ 491 (1091)
. +.|..||..+++..... .++ ... |.++...+++. +..++.++-|..||..+++..... ......|.++
T Consensus 149 -~-~gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 149 -P-EGLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp -T-TEEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred -C-CceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 4 44889998765321100 011 123 88888888886 444555556889998777643321 1234567777
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecC-------CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
... .++. +..++.++-+..||..+......... ....|.++...++|...+... . -|.+||..+
T Consensus 221 ~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~-----Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQQ--SPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-N-----DLNIYHEGT 291 (795)
T ss_dssp EEE--ETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-S-----CEEEEETTT
T ss_pred EEc--CCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-C-----hhheEcCCC
Confidence 663 3444 45555554588888766543322211 235689999999888666442 1 288999887
Q ss_pred ceeeEEEec----ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC--C--CCCCCceEEEccCCCE
Q 001367 565 GAIKRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL 636 (1091)
Q Consensus 565 ~~~~~~~~~----~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~ 636 (1091)
+........ .......|.++...++|. +..|+.++.|..|+..++......... . ....|.++...++|.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence 765433221 111236799999988876 566777788999987665433222111 0 123477888888776
Q ss_pred EEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccc
Q 001367 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
|.+|+.++-|..|+..++........ +...
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~--------------------------------~~~~------------------ 399 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQ--------------------------------EDES------------------ 399 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecC--------------------------------CCCc------------------
Confidence 55677777788888765422110000 0000
Q ss_pred cCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCC
Q 001367 717 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 796 (1091)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1091)
. .......|.++...++|..|..++.++.+.+|+...... +.+.....
T Consensus 400 ------~-----~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~~--------- 447 (795)
T 4a2l_A 400 ------A-----RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRNS--------- 447 (795)
T ss_dssp -------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTTS---------
T ss_pred ------c-----cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCCC---------
Confidence 0 000234678888888888455566656677777443211 11110000
Q ss_pred CCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecC------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001367 797 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIY 870 (1091)
Q Consensus 797 ~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~~la~g~~dg~i~iw 870 (1091)
......|.++...++|.+.+... +.+.+||..+++....... ....|.++...+ ++++.+ |+. +-+..|
T Consensus 448 -~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~ 522 (795)
T 4a2l_A 448 -QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSVF 522 (795)
T ss_dssp -CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEEE
T ss_pred -CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEEE
Confidence 01345789999999998777665 5688899887765433211 235789999988 676655 444 458889
Q ss_pred eccCcceeeeec-------cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEE
Q 001367 871 NARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 943 (1091)
Q Consensus 871 d~~~~~~~~~l~-------~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f 943 (1091)
+..+++. .+. .....|.++...++|++.++.. .| |..||..++... .+....+... ..|.++..
T Consensus 523 ~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~---~~~~~~gl~~--~~i~~i~~ 593 (795)
T 4a2l_A 523 KQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIK---RYNTTNGLPN--NVVYGILE 593 (795)
T ss_dssp EEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEE---EECGGGTCSC--SCEEEEEE
T ss_pred eCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEE---EeCCCCCCch--hheEEEEE
Confidence 9877665 221 2345799999999998776443 44 889998875532 2222233222 35888999
Q ss_pred cCCCCEEEEEecCeEEEEEcCCcceeeeeecCC---ccCE--EEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 944 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 944 s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v--~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
.++|.+.+++ ++.|..||..+++.. .+.... ...+ .++...++|.+++ |+.+| +..++.
T Consensus 594 d~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p 657 (795)
T 4a2l_A 594 DSFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRP 657 (795)
T ss_dssp CTTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECG
T ss_pred CCCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcH
Confidence 9999877766 566888888766533 222111 1222 4677788887655 66777 445554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-13 Score=146.26 Aligned_cols=248 Identities=14% Similarity=0.154 Sum_probs=176.4
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE-CCCCC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~ 409 (1091)
.+|-..+.+++++|+|+ ++++...++.|.+||.. ++.+..... .....+|...+..+++ .+++.
T Consensus 26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~ 90 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGD 90 (286)
T ss_dssp TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTE
T ss_pred CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCe
Confidence 35556899999999998 77887888999999977 554432100 0001235567899999 57777
Q ss_pred EEEEEEC-CCEEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec--CCC
Q 001367 410 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG 485 (1091)
Q Consensus 410 ~las~~~-d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~ 485 (1091)
++++... ++.|.+|| .+++.+. .+. .+...+..++++++|+ ++++...++.|.+||. +++.+..+. .+.
T Consensus 91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL 163 (286)
T ss_dssp EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence 7776643 78999999 4554333 332 3445789999999998 7777777899999995 566666663 344
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC--CCcEEEEEEcCCCCEEEEEecCCCCce-EEEEEec
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE 562 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~~-~i~iwd~ 562 (1091)
..+..++++ +++.++++...++.|++||.. ++....+... ...+..++++++|+.+++... ++ .|.+||.
T Consensus 164 ~~p~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~ 236 (286)
T 1q7f_A 164 EFPNGVVVN--DKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ 236 (286)
T ss_dssp SSEEEEEEC--SSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred CCcEEEEEC--CCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence 567888885 467788888889999999974 3444444433 246789999999987777643 33 7999995
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1091)
+++.+..+..+. ....+..++++|+++.+++ +.++.|++|++...
T Consensus 237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 566666665543 1234789999999976555 67999999997653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-13 Score=150.75 Aligned_cols=274 Identities=10% Similarity=0.030 Sum_probs=187.2
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..|.+++|+|++.. ++..+.++.++.| .++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTI---TAEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEE---ECEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCccc---ccceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 36888999999874 4666778889999 2332221 44566778999999999988888
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC----CcEEEEeCCCCceeEEec--CCCcce
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV 488 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~--~~~~~v 488 (1091)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..++.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 888999999998875332 1224667899999999998 66666655 689999988877653433 244568
Q ss_pred EEEeecccCCceEEEEEec------CCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 489 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
..+++++ ++.++++... .+.|..++.+..+... +......+..++|+|+++.++.+.. .++.|++||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888854 5666666553 2455556554433322 2222234678999999997766542 2457999998
Q ss_pred CC-ceeeEEEe-----cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC----CCCCceEEEcc
Q 001367 563 SE-GAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK 632 (1091)
Q Consensus 563 ~~-~~~~~~~~-----~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~ 632 (1091)
.+ +.....+. ... ....+..++++++++.+++...++.|.+||. +++.+..+..+.. ...+..++|+|
T Consensus 212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence 63 33222211 111 0136788999999998787778899999998 5666666654421 11468999999
Q ss_pred CCCEEEEEECCC
Q 001367 633 NGTLLAVIANEN 644 (1091)
Q Consensus 633 ~~~~l~~~~~dg 644 (1091)
|++.|++++.++
T Consensus 290 dg~~L~v~~~~g 301 (333)
T 2dg1_A 290 GTNQLIICSNDI 301 (333)
T ss_dssp TSCEEEEEEECG
T ss_pred CCCEEEEEeCcc
Confidence 987777766653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=168.08 Aligned_cols=250 Identities=10% Similarity=-0.005 Sum_probs=175.7
Q ss_pred CCCccEEEEEECCCCCEEEEEECCC-----EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCc--
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~-- 466 (1091)
+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCccc
Confidence 4556789999999999999876543 899999999875442 122 22367899999999 6666666655
Q ss_pred --------------EEEEeCCCCcee--EEec--CCCcceEEEeecccCCceEEEEEec-----CCeEEEEecCC-----
Q 001367 467 --------------IKVWDAVTGSRT--YSFE--GHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS----- 518 (1091)
Q Consensus 467 --------------i~iwd~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~----- 518 (1091)
|++|++.++... ..+. .|...+..+.| ++||++|+..+. +..|++||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999887632 2223 34555677777 557788877765 56899999986
Q ss_pred -CC-ceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee--eEEEecccccccceEEEEEcCCCCEEE
Q 001367 519 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1091)
Q Consensus 519 -~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~ 594 (1091)
+. ....+..+...+.. .|+|+|+.|+..+........|.+||+.++.. .+.+..+. ....+..++|++++..++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence 32 34444444444443 58899999888775443467899999988742 34444443 013678889987777777
Q ss_pred EEeCCCe--EEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC----CCeEEEEECCCCC
Q 001367 595 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1091)
Q Consensus 595 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1091)
+...++. |++|++.+++.+..+..+. ..+..++++|+++.++.... .++++.||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~--~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCCC--ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7888874 6667887788777776652 35778889999877664432 4789999998765
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-09 Score=129.33 Aligned_cols=590 Identities=12% Similarity=0.089 Sum_probs=338.6
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..|+++.-.++|.. -.|+.+| +..||-.+ . +.+....... .. ..-....|.++...++|..|-+|
T Consensus 19 n~V~~I~qD~~G~l--WigT~~G-L~ryDG~~---f-----~~~~~~~~~~--~~--~~l~~n~I~~i~~d~~g~~lWig 83 (781)
T 3v9f_A 19 NYVLSITQDKQGFL--WFATEEG-LNKFDGTR---F-----ITYYKEEQSS--SV--QSITGNELNEVYTDPVQPVIWIA 83 (781)
T ss_dssp SBEEEEEECTTSCE--EEEESSC-EEEECSSS---E-----EEECCCSSCS--SS--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred CEeEEEEECCCCCE--EEccCCc-CccccCCc---e-----EEEEcCCCCC--cc--ccccccccceEEEcCCCCEEEEE
Confidence 38999999999973 4455555 66676332 1 1111100000 00 00023569999999988845557
Q ss_pred ECCCEEEEEEeeCCcccceeEEEe-----c---cccCeeEEEEcC--CCCceEEEEeeCCCcEEEEeCCCCceeEEec--
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEID-----A---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-- 482 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~-----~---h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-- 482 (1091)
+.++-+..||..+++.. .+. . ....|.++.... +|. +..++.++-|..+|..+++......
T Consensus 84 t~~~Gl~~~d~~~~~f~----~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~ 156 (781)
T 3v9f_A 84 TQRAGLNAYNYETQSFS----VYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKST 156 (781)
T ss_dssp ESSSCEEEEETTTTEEE----EECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTT
T ss_pred eCCCCcceECCCCCeEE----eeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCc
Confidence 77745999998875421 121 0 123588888877 665 4445545568899977765433211
Q ss_pred ---CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-------CCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 483 ---GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 483 ---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
.....|.++... .++ .|..++.++-+..||..+........ .....|.++...++|...+...
T Consensus 157 ~~~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~---- 229 (781)
T 3v9f_A 157 VPALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS---- 229 (781)
T ss_dssp CTTCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET----
T ss_pred ccCCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC----
Confidence 112456766653 344 45556666568888876644322111 1234688999888888666542
Q ss_pred CceEEEEEecCCceeeEEEecc----cccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe-------CC--
Q 001367 553 GESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG-- 619 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~-- 619 (1091)
. -+.+||..+++........ ......|.++...++|. +..|+..+-|.++|..++....... ..
T Consensus 230 -~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~ 306 (781)
T 3v9f_A 230 -K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDN 306 (781)
T ss_dssp -T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSS
T ss_pred -C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCC
Confidence 2 3899998777654322111 11235688998887765 5666665678899988765432221 10
Q ss_pred ---CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCC
Q 001367 620 ---GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKED 696 (1091)
Q Consensus 620 ---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 696 (1091)
-....|.++...++|. |.+|+.++-|..++........ ... .+.
T Consensus 307 ~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~-------------------------------~~~ 353 (781)
T 3v9f_A 307 NYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY-------------------------------SPT 353 (781)
T ss_dssp TTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC-----------------------------------
T ss_pred CCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc-------------------------------Ccc
Confidence 1123577888888776 5667766778887765432110 000 000
Q ss_pred CCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeec
Q 001367 697 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 776 (1091)
Q Consensus 697 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 776 (1091)
. ..+.......|.++...++|. |..++.++-+..|+......
T Consensus 354 ~----------------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~--------- 395 (781)
T 3v9f_A 354 Q----------------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA--------- 395 (781)
T ss_dssp C----------------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE---------
T ss_pred c----------------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE---------
Confidence 0 000000234678888888887 55555555566676432211
Q ss_pred cCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEec--CCCCCeEEEEEcCCC
Q 001367 777 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHD 854 (1091)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~ 854 (1091)
..+.... ......|.+++..++|.+.+...++.+..++..+++...... .....|.++...+ +
T Consensus 396 ---~~~~~~~-----------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~ 460 (781)
T 3v9f_A 396 ---IYNKENR-----------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-N 460 (781)
T ss_dssp ---ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-T
T ss_pred ---EEccCCC-----------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-C
Confidence 0000000 013567899999889988776556778999987776543321 2346789999988 6
Q ss_pred CcEEEEEeCCCeEEEEeccCcceeeeeccc-----cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccC
Q 001367 855 NNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 929 (1091)
Q Consensus 855 ~~~la~g~~dg~i~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 929 (1091)
+.+.+ |+. +-|..||..+++........ ...|.++...++|++.+.....| |..||..+++... +....
T Consensus 461 g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~ 534 (781)
T 3v9f_A 461 KKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYE 534 (781)
T ss_dssp SEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTT
T ss_pred CCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCC
Confidence 66544 555 56899998876643322211 46799999999998776443345 7888887754322 22222
Q ss_pred CCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCC---ccCEEEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 930 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPISQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 930 ~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
+.. ...|.++...++|.+.+++.+|-+..||..+++.. .+...+ ...|.++...++|.+.++ +.+| |..++.
T Consensus 535 ~l~--~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~ 609 (781)
T 3v9f_A 535 GFC--SNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYIT 609 (781)
T ss_dssp TCS--CSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEET
T ss_pred CCC--CCeeEEEEECCCCCEEEEECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEEC
Confidence 221 24688999999999887766554488998776532 221111 346788888999987664 4555 778888
Q ss_pred CCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 1007 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
.++... .+....-++.. ....-++..++ +| .|..|+.+| +..++...
T Consensus 610 ~~~~~~-~~~~~dGl~~~----~f~~~~~~~~~-~G-~l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 610 SKKCFY-TYDHSNNIPQG----SFISGCVTKDH-NG-LIYFGSING-LCFFNPDI 656 (781)
T ss_dssp TTTEEE-EECGGGTCCSS----CEEEEEEEECT-TS-CEEEEETTE-EEEECSCC
T ss_pred CCCceE-EecccCCcccc----ccccCceEECC-CC-EEEEECCCc-eEEEChhh
Confidence 766543 33322323322 22223455565 34 566677777 55666543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-13 Score=144.70 Aligned_cols=249 Identities=12% Similarity=0.049 Sum_probs=177.1
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..+..+..+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.++++
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~ 76 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCL 76 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeE
Confidence 3445566666788999999999878889999999999999887 322 3346678999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEecc-ccCeeEEEEcCCCCceEEEE----ee-------------CCCc
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CG-------------DDKT 466 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~~~l~s----~~-------------~d~~ 466 (1091)
+|+|+++++...++.|.+||..+++.........+. ...+..++++|+|+ ++++ ++ ..+.
T Consensus 77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcE
Confidence 999998888777789999999887643211111111 23567899999998 6666 32 1345
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecC-CCCc---eeeecCCCCcEEEEEEcCCCC
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGR 542 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~s~d~~ 542 (1091)
|..++.. ++ +..+..+......++|+ +++..+++.+.++.|.+|++. .+.. ...+......+.+++++++|+
T Consensus 155 l~~~~~~-g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 155 VFRLAPD-GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp EEEECTT-SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred EEEECCC-CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence 6666654 44 34444566677888884 466677778888999999997 3332 223333444567899999999
Q ss_pred EEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEE-cCCCCEEEEEeCCCeEEEEECCCCee
Q 001367 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 612 (1091)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~-~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1091)
..++. .+.|.+||.. ++.+..+..+. . +.+++| +|+++.|++++.+ .+..++..+.++
T Consensus 231 l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 231 IWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 77665 2349999986 77777777655 4 888999 6899999998876 455667666554
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-13 Score=168.27 Aligned_cols=249 Identities=10% Similarity=-0.008 Sum_probs=172.2
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCC----cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+|...+..++|||||++|+.+.+.+| .|++||+.+|+.+.. . + ....+..++||||
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspD 181 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHD 181 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTT
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeC
Confidence 45557889999999996654444333 899999999986642 0 1 1123667999999
Q ss_pred CCEEEEEECCCE----------------EEEEEeeCCcccceeEEEe--ccccCeeEEEEcCCCCceEEEEeeC-----C
Q 001367 408 GSLLGVAYSKHI----------------VQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGD-----D 464 (1091)
Q Consensus 408 g~~las~~~d~~----------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~-----d 464 (1091)
|+.|+.++.++. |++|++.++...... .+. .|...+..+.|||||++ |+.++. +
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~-v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~ 258 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL-CAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPV 258 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSC
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceE-EeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCc
Confidence 999999987765 999999887532111 222 24556889999999995 444432 5
Q ss_pred CcEEEEeCCC------Cc-eeEEecCCCcceEEEeecccCCceEEEEEecC----CeEEEEecCCCCc--eeeecCCC--
Q 001367 465 KTIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG-- 529 (1091)
Q Consensus 465 ~~i~iwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~-- 529 (1091)
..|.+||+.+ +. ....+..+...+... +++ +|..|+..+.. +.|.+||+.+... ...+..+.
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 335 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK 335 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence 7899999987 53 456666666666543 433 44555555443 3699999987652 23333333
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE-e---CCCeEEEE
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-G---DDHVIKIW 605 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-s---~dg~i~iw 605 (1091)
..+..++|++++..+++... ++...|++|++.+++.++.+..+. ..+..+.++|+++.++.. + ..++|+.|
T Consensus 336 ~~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~ 410 (710)
T 2xdw_A 336 DVLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC 410 (710)
T ss_dssp CEEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred CeEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEE
Confidence 36778899877666666654 345678899987787777776654 678889999998877643 2 45789999
Q ss_pred ECCCCe
Q 001367 606 DMNKVQ 611 (1091)
Q Consensus 606 d~~~~~ 611 (1091)
|+.+++
T Consensus 411 d~~tg~ 416 (710)
T 2xdw_A 411 DLTKEE 416 (710)
T ss_dssp ETTSSS
T ss_pred ECCCCc
Confidence 998877
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-11 Score=136.22 Aligned_cols=203 Identities=10% Similarity=0.011 Sum_probs=139.5
Q ss_pred eEEEecCCCCEEEEEe---CCeEEEEEccCceeEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee
Q 001367 805 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 880 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~ 880 (1091)
..++++|||++|++++ ++.|.++| .+++.+.+ +.... ++.+.|++.+.+++.+.||.+.+++. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4678888988888775 36799999 99988877 65332 24455645566777888999999999 8776633
Q ss_pred ec-----cccCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCC----cCCCCCceEEEEcCCCCEE
Q 001367 881 LE-----GHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF 950 (1091)
Q Consensus 881 l~-----~h~~~V-~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~i~~l~fs~dg~~l 950 (1091)
.. ....++ ....+++++..++..+..+.+.+.|+.+........+...... ...+.....++|+||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 21 111222 2356677766655555788999999976542221222111110 0001234458899999988
Q ss_pred EEEe-----------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCC-EEEEEE-cCCcEEEEeCCCCceEEEe
Q 001367 951 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 951 a~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~-~l~t~~-~dg~v~iwd~~~~~~~~~~ 1015 (1091)
.+.. ++.|.++|..+++.+..+..+ ....+++|+|||+ +++++. .++.|.+||+.+++.+.++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 7742 257999999999998887544 3688999999999 677776 4899999999999998774
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-13 Score=163.26 Aligned_cols=247 Identities=11% Similarity=-0.016 Sum_probs=165.8
Q ss_pred cCCCccEEEEEECCCCCEEEEE-----ECCCEEEEEEeeCCcccceeEEEeccccCe--eEEEEcCCCCceEEEEeeCCC
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNV--NDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v--~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
.+|...+..++|||||++||.+ +.+.+|++||+.+|+.+. ..+...+ ..++|+|||+ .|+.++.|.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-----~~~~~~~~~~~~~wspDg~--~l~~~~~d~ 189 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-----VDVIEGGKYATPKWTPDSK--GFYYEWLPT 189 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-----SCCBSCCTTCCCEECTTSS--EEEEEECCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-----CcccCcccccceEEecCCC--EEEEEEecC
Confidence 3566789999999999999954 345689999999987541 1122222 6899999999 677777766
Q ss_pred c-------------EEEEeCCCCc----eeEEecCCCcceEEEeecccCCceEEEEEecCC----eEEEEecCCCCceee
Q 001367 466 T-------------IKVWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVD 524 (1091)
Q Consensus 466 ~-------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~ 524 (1091)
. |++|++.++. ++.....|...+..+.+ ++||++|+..+.++ .|.+|+..++. ...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~ 266 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRL 266 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEE
Confidence 5 9999999876 33333345566777777 55777887777665 56666654443 333
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee---eEEEecccccccceEEEEEcCCCCEEEEEeCCCe
Q 001367 525 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1091)
Q Consensus 525 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~ 601 (1091)
+..+...+....+ ++|. ++..+.....+..|++||+.++.. ...+..+. ...+..++++ ++..+++...|+.
T Consensus 267 l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTE
T ss_pred eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCE
Confidence 3333444455555 6777 655554333468899999987753 33333321 2457788888 6667777888998
Q ss_pred EEEEECC-CCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC----CCeEEEEECCCCC
Q 001367 602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1091)
Q Consensus 602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1091)
.++|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 342 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 342 SEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8887654 355555555432 224667888999987774443 4789999998775
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-12 Score=138.75 Aligned_cols=204 Identities=13% Similarity=0.070 Sum_probs=140.7
Q ss_pred eeEEEecCCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC-cceee
Q 001367 804 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 879 (1091)
Q Consensus 804 v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~-~~~~~ 879 (1091)
...++|+|||+++.++. ++.|.++|+.+++.+.++..... ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 44678888888887775 47899999999999988864331 233433 566777788899988888876 55432
Q ss_pred eeccc----cCCeE-EEEEC-CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecc------CCCcCCCCCceEEEEcCCC
Q 001367 880 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ 947 (1091)
Q Consensus 880 ~l~~h----~~~V~-~l~~s-pdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~l~fs~dg 947 (1091)
....+ ..++. ..+|. ++|+++. .+.+|.|.+.|+.+........+... .+... .....+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence 21111 12222 24564 6776555 66689999999987543222222110 11111 235568889999
Q ss_pred CEEEEEe-----------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCC-EEEEE-EcCCcEEEEeCCCCceEEE
Q 001367 948 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCR 1014 (1091)
Q Consensus 948 ~~la~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~-~l~t~-~~dg~v~iwd~~~~~~~~~ 1014 (1091)
+.+.+.. .++|.++|+.+++.+..+..+ ..+.+++|++|++ +|+++ ..++.|.++|..+++.+.+
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9988842 247999999999999987765 3688999999997 66664 4589999999999999977
Q ss_pred ee
Q 001367 1015 IL 1016 (1091)
Q Consensus 1015 ~~ 1016 (1091)
+.
T Consensus 370 i~ 371 (386)
T 3sjl_D 370 VN 371 (386)
T ss_dssp EC
T ss_pred ec
Confidence 76
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-13 Score=145.80 Aligned_cols=278 Identities=11% Similarity=-0.024 Sum_probs=189.7
Q ss_pred CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCccccee
Q 001367 355 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434 (1091)
Q Consensus 355 ~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~ 434 (1091)
.+++|.+||..+++...... ...--.........+++. +++..++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~-------------~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-- 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVF-------------YRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-- 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHH-------------HHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred CCceEEEEECCCCEEhhhhH-------------hhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence 37899999999998654210 000000122446777774 45555566667899999999987655
Q ss_pred EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC-----cceEEEeecccCCceEEEEEe-cC
Q 001367 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD 508 (1091)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~d 508 (1091)
++. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .+
T Consensus 79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 343 345688999999985 56666578999999999998887765433 13455666 2 344455544 48
Q ss_pred CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC------ceEEEEEecCCceeeEEEecccccccceE
Q 001367 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS 582 (1091)
Q Consensus 509 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 582 (1091)
+.|.++|..+.+....+... .....++++|+|++++++...... .+.|.++|..+++....+.... .....
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~ 228 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS 228 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence 89999999988776665543 344678999999977665432100 2679999999998877765432 23688
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC-CCEEEEE----ECCCeEEEEECCCCCee
Q 001367 583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GTLLAVI----ANENRIKILETPESNSV 657 (1091)
Q Consensus 583 ~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~----~~dg~i~iwd~~~~~~~ 657 (1091)
.++++|++++++++.. .|.+||..+++................++++|+ +.+.++. ..++.|.+|+.. ++.+
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 9999999999988765 899999998876421111111234678999994 5555554 467899999998 7776
Q ss_pred cccc
Q 001367 658 DAAG 661 (1091)
Q Consensus 658 ~~~~ 661 (1091)
..+.
T Consensus 306 ~~i~ 309 (328)
T 3dsm_A 306 DEFY 309 (328)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-12 Score=135.73 Aligned_cols=245 Identities=12% Similarity=0.102 Sum_probs=177.9
Q ss_pred EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC-ccEEEEEECCCCCEEEEEECCCEEEEEEeeC
Q 001367 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1091)
Q Consensus 349 llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1091)
++++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 779999999999999999998754 33344 4788999999999998 35778999999 7
Q ss_pred CcccceeEEEecc-ccCeeEEEEcCCCCceEEEEeeC-CCcEEEEeCCCCceeEEecC------CCcceEEEeecccCCc
Q 001367 428 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKENI 499 (1091)
Q Consensus 428 ~~~~~~~~~~~~h-~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~ 499 (1091)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+.++.. +......+++ .++|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 76554 44443 34688999999999 7777776 778888884 7888777642 1122333444 5678
Q ss_pred eEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccccc--
Q 001367 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-- 577 (1091)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-- 577 (1091)
.++++...++.|..||.+ ++.+..+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+......
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 78777776543 4556788899999988754 457999999999999888754311
Q ss_pred -ccceEEEEEcCCCCEEEEEeCC--------CeEEEEEC-CCCeeEEEEeCCCCCCCCceEE
Q 001367 578 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 578 -~~~v~~v~~~~~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
-..+..+...++|+.+++.... +..+++.+ .+|+.+-.+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1337788889999888776421 13345554 4677777776655544555543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-11 Score=131.37 Aligned_cols=285 Identities=11% Similarity=0.055 Sum_probs=193.4
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
+..+...+.+++++++|+ +.++...++.|.+||.. ++.... . ...+...+.+++++++|.
T Consensus 10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE 69 (299)
T ss_dssp CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence 344556899999999998 55665567899999988 543321 0 223457899999999999
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE-ecCCCcce
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV 488 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v 488 (1091)
+.++...++.|..|+.. ++ ... ..+......+..+++.++|. ++++...++.|.+||. +++.... ...+...+
T Consensus 70 l~v~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEEEETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEeCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 88887778889999976 32 221 12223455789999999998 6777667889999998 5554432 23344567
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceee-ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
..+++. +++.+.++...++.|..||. +++.... .......+.+++++++|+..++... .+.|.+||. +++.
T Consensus 144 ~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 144 SFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEI 215 (299)
T ss_dssp EEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCE
T ss_pred ceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcE
Confidence 888874 46667777777889999998 4443322 2333456789999999986665432 456999998 6654
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
.. +... .....+..++++++|+..++...++.|..||. +++. ..+........+.++++ +++.+.++.. .+.+.
T Consensus 216 ~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 216 TE-FKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp EE-EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred EE-EECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 33 3221 12357889999999886666557889999998 4543 34433332345788899 8887655544 56777
Q ss_pred EEECCCC
Q 001367 648 ILETPES 654 (1091)
Q Consensus 648 iwd~~~~ 654 (1091)
.++..+.
T Consensus 290 ~~~~~~~ 296 (299)
T 2z2n_A 290 KLTLIKD 296 (299)
T ss_dssp EEEEC--
T ss_pred EEEcCcc
Confidence 7776543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-11 Score=135.65 Aligned_cols=281 Identities=12% Similarity=0.008 Sum_probs=185.8
Q ss_pred EEcCCCceEEEEEc-CCC---cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE-
Q 001367 341 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1091)
Q Consensus 341 ~fspdg~~llasg~-~dg---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 415 (1091)
...|++++++++-. ... +|.++|..+++.+.. +.....+ .++|||||++|.++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 44577875544432 223 889999999987643 2222233 899999999999986
Q ss_pred ---------CCCEEEEEEeeCCcccceeEEEe--cc---ccCeeEEEEcCCCCceEEEEee--CCCcEEEEeCCCCceeE
Q 001367 416 ---------SKHIVQLYAYHGGSDARQQLEID--AH---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 416 ---------~d~~i~iwd~~~~~~~~~~~~~~--~h---~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~ 479 (1091)
.++.|.+||..+.+.+.... +. .+ ...-..++|+|||+ +|+.+. .++.|.++| .+++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999998876554321 11 00 12345899999999 455554 257899999 9999887
Q ss_pred E-ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-----CCCCc-EEEEEEcCCCCEEEEEecCCC
Q 001367 480 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 480 ~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
+ +.... . +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++....
T Consensus 162 ~~i~~~~-~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSSPT-C---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCCCc-e---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 64322 1 23333332 45667788999999999 665542221 11112 223456676665544433
Q ss_pred CceEEEEEecCCce--eeEEEeccc-------ccccceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeE
Q 001367 553 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL 613 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~ 613 (1091)
.+.+.+.|+.++. .+..+.... ........++++|+++.++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 4468888987553 222222100 00123445789999999888653 357999999999999
Q ss_pred EEEeCCCCCCCCceEEEccCCC-EEEEEE-CCCeEEEEECCCCCeecc
Q 001367 614 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 659 (1091)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~ 659 (1091)
..+.... ....++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9997654 368999999999 777776 489999999999988766
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.7e-13 Score=146.10 Aligned_cols=260 Identities=10% Similarity=0.057 Sum_probs=181.8
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
..|.+++|++++..++..+.++.++.|. ++. ...+..+...+.+++|+++|+ +++++..++.|.+||..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEP---WLEISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEE---EEEEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccceeEEeecccCcccc---cce---eEEEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence 4577889999988888777888899992 222 224566777789999999998 77788889999999998887
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecC----CeEEEEecCCCCceeeec--CCCCcEEEEEEcCCCCEEEEEecC
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
.......+...+.+++++ +++.++++...+ +.|.+||.+.......+. .....+..++++|+|+.+++....
T Consensus 78 ~~~~~~~~~~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 78 IKRPFVSHKANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp EEEEEECSSSSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred EEEEeeCCCCCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 665544566789999985 466777777666 689999988776553332 234568899999999887765421
Q ss_pred --CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE-eCCCeEEEEECCC-CeeEEEE------eCCC
Q 001367 551 --KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK-VQLLTTI------DAGG 620 (1091)
Q Consensus 551 --~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~~-~~~~~~~------~~~~ 620 (1091)
.+..+.|+.+|..+++....... . ..+..++|+|+++.++.+ +.++.|++|+..+ +..+..+ ....
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQN-I---SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEE-E---SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred cccCCCceEEEEeCCCCEEEEeecC-C---CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 11245688888776654433322 2 457889999999876654 5678999999864 3322211 1111
Q ss_pred CCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccc------cceeeee
Q 001367 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD------NLRKLSV 672 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~ 672 (1091)
. ..+..++++++|+++++...++.|.+|+.. ++.+..+..+.. .+.++++
T Consensus 232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQF 287 (333)
T ss_dssp S-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred C-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEE
Confidence 1 245789999999988887788999999984 555544433322 4566666
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-13 Score=143.23 Aligned_cols=287 Identities=13% Similarity=0.112 Sum_probs=192.5
Q ss_pred EEEcCCCceEEEEEcC----CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 340 MDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 340 v~fspdg~~llasg~~----dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
....||+++++++-.. ++.|.+.|..+++.+.. +.....+ . +++||||++|.++.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-------------------I~vG~~P-~-va~spDG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFLP-N-PVVADDGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSSC-E-EEECTTSSCEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-------------------EECCCCC-c-EEECCCCCEEEEEc
Confidence 4557899877666543 68999999999988764 2112233 4 99999999988775
Q ss_pred ----------CCCEEEEEEeeCCcccceeEEEec--c---ccCeeEEEEcCCCCceEEEEee--CCCcEEEEeCCCCcee
Q 001367 416 ----------SKHIVQLYAYHGGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 416 ----------~d~~i~iwd~~~~~~~~~~~~~~~--h---~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~ 478 (1091)
.++.|.+||..+++.+..+. +.. + ...-..++|+|||++ ++.+. .++.|.++|+.+++.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEEE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcEE
Confidence 35789999999987665332 211 0 124567999999995 44443 3789999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC-CCceeee----cCCCCcEE-EEEE-cCCCCEEEEEecCC
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDY----DAPGLGCT-RMAY-SANGRRLFSCGTSK 551 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~----~~~~~~i~-~~~~-s~d~~~l~~~~~~~ 551 (1091)
.++..... ...+ |. ..+.+++.+.||.+.+.++.. ++..... .....++. ...| .++|++++...
T Consensus 174 ~tI~v~g~---~~~~-P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--- 245 (386)
T 3sjl_D 174 RMLDVPDC---YHIF-PT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--- 245 (386)
T ss_dssp EEEECCSE---EEEE-EE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT---
T ss_pred EEEECCCc---ceee-cC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC---
Confidence 88853221 1111 22 234666888899988888876 3332211 11112221 2355 36776655432
Q ss_pred CCceEEEEEecCCce--eeEEEecc-------cccccceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCee
Q 001367 552 EGESFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQL 612 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~v~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~ 612 (1091)
.+.+++.|..++. ....+.-. .........++++++++.++.... .+.|.+.|+.+++.
T Consensus 246 --~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 246 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 4569999987654 33333200 000123445778999999988642 25799999999999
Q ss_pred EEEEeCCCCCCCCceEEEccCCC-EEEEEEC-CCeEEEEECCCCCeecccccc
Q 001367 613 LTTIDAGGGLPENPRICFNKNGT-LLAVIAN-ENRIKILETPESNSVDAAGVL 663 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~~ 663 (1091)
+..+.... .+..+++++|++ +|++... ++.|.++|..+++.+..+...
T Consensus 324 ~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 324 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred EEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 99987653 368999999997 6766554 899999999999888777643
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.6e-09 Score=127.70 Aligned_cols=536 Identities=11% Similarity=0.045 Sum_probs=310.4
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC--CCCEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGV 413 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las 413 (1091)
.|.++...++|..| -.|+.++.+..||..+++...... . .. .. ..-....|.++.... +|.+. .
T Consensus 67 ~I~~i~~d~~g~~l-Wigt~~~Gl~~~d~~~~~f~~~~~----~-----~~-~~--~~l~~~~i~~i~~d~~~~g~lw-i 132 (781)
T 3v9f_A 67 ELNEVYTDPVQPVI-WIATQRAGLNAYNYETQSFSVYQY----N-----PE-DP--QSLITNDVTHITSSVQAGKGLW-V 132 (781)
T ss_dssp CEEEEEECSSSSEE-EEEESSSCEEEEETTTTEEEEECC----C-----TT-CS--SSCSCSCEEEEEECSSTTSEEE-E
T ss_pred ccceEEEcCCCCEE-EEEeCCCCcceECCCCCeEEeecc----c-----cC-CC--CCcccCcceEEEecCccCCCEE-E
Confidence 79999999998712 345566579999988765432100 0 00 00 000124688998887 66544 4
Q ss_pred EECCCEEEEEEeeCCcccceeEEEec------cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec-----
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE----- 482 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----- 482 (1091)
++.++.|..||..+++.. .+.. ....|.++...++|. +..++.++-|..||..+++...-..
T Consensus 133 ~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 205 (781)
T 3v9f_A 133 CTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNP 205 (781)
T ss_dssp EESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-----
T ss_pred EECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCc
Confidence 553444888888765321 1211 124588888877776 4446656568899987765432211
Q ss_pred --CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-------CCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 483 --GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 483 --~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.....|.++.. +.++. |..++.+ -+.+||..+........ .....|.++...++|...+.....
T Consensus 206 ~~l~~~~i~~i~~--d~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~--- 278 (781)
T 3v9f_A 206 NSLPGNDVRCIYK--DTNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELN--- 278 (781)
T ss_dssp ---CCSSEEEEEE--CTTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSS---
T ss_pred ccCCCCceeEEEE--cCCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCC---
Confidence 11345777766 34444 4445555 58888876543322111 124468899988888766543211
Q ss_pred ceEEEEEecCCceeeEEEe-----------cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe-----
Q 001367 554 ESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID----- 617 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~----- 617 (1091)
-|.++|..++....... ........|.++...++|. +..|+.++-|..++..++.......
T Consensus 279 --Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 355 (781)
T 3v9f_A 279 --GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQM 355 (781)
T ss_dssp --CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CC
T ss_pred --CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccc
Confidence 28889887765432221 0112245789999888775 6667777778999887654433211
Q ss_pred --CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCC
Q 001367 618 --AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKE 695 (1091)
Q Consensus 618 --~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 695 (1091)
..-....|.+++..++|. |.+|+.++-|..|+..++.... +. .+
T Consensus 356 ~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~--------------------------------~~ 401 (781)
T 3v9f_A 356 NESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIY-NK--------------------------------EN 401 (781)
T ss_dssp CSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEEC-C-----------------------------------
T ss_pred ccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEE-cc--------------------------------CC
Confidence 111123577888877776 5566766668888865331110 00 00
Q ss_pred CCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceee
Q 001367 696 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 775 (1091)
Q Consensus 696 ~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 775 (1091)
.......|.++...++|. |..++.++.+..++.....
T Consensus 402 ---------------------------------~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~--------- 438 (781)
T 3v9f_A 402 ---------------------------------RELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKK--------- 438 (781)
T ss_dssp -----------------------------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCE---------
T ss_pred ---------------------------------CCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCc---------
Confidence 000234677888877887 4445555556666543221
Q ss_pred ccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCC-----CCCeEEEEE
Q 001367 776 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATSLAF 850 (1091)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~ 850 (1091)
....... ......|.+++..++|.+.+... +.+..+|..+++........ ...|.+++.
T Consensus 439 --------------~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 502 (781)
T 3v9f_A 439 --------------FQIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ 502 (781)
T ss_dssp --------------EEECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred --------------EEEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence 1110000 01346788999988888766555 67899998876554332222 457899999
Q ss_pred cCCCCcEEEEEeCCCeEEEEeccCcceeeeecc---ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001367 851 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 927 (1091)
Q Consensus 851 s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~ 927 (1091)
.+ ++.+.+ |+.++-+..||..+++...-... ....|.++...++|++.++. .+|.|..||..+++.. .+..
T Consensus 503 d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~---~~~~ 576 (781)
T 3v9f_A 503 DS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ---VFQR 576 (781)
T ss_dssp CT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE---EECG
T ss_pred cC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE---Eccc
Confidence 88 676555 55544488898876654322111 24578999999999877654 4675488888775532 2222
Q ss_pred cCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCC-----ccCEEEEEEeeCCCEEEEEEcCCcEE
Q 001367 928 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-----SVPISQATFSCDCRMVFTSFVDGTLS 1002 (1091)
Q Consensus 928 ~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h-----~~~v~~v~fs~dg~~l~t~~~dg~v~ 1002 (1091)
..+... ..+.++...++|.+.+++.. .|..++..+++.. .+.... .-...++...+||.+++ |+.+| +.
T Consensus 577 ~~gl~~--~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~ 650 (781)
T 3v9f_A 577 KEGLPN--THIRAISEDKNGNIWASTNT-GISCYITSKKCFY-TYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-LC 650 (781)
T ss_dssp GGTCSC--CCCCEEEECSSSCEEEECSS-CEEEEETTTTEEE-EECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-EE
T ss_pred cCCCCC--ceEEEEEECCCCCEEEEcCC-ceEEEECCCCceE-EecccCCccccccccCceEECCCCEEEE-ECCCc-eE
Confidence 233222 35789999999998777644 4777887755432 221111 11234677778888655 66777 55
Q ss_pred EEeCC
Q 001367 1003 IHEAS 1007 (1091)
Q Consensus 1003 iwd~~ 1007 (1091)
.++..
T Consensus 651 ~f~p~ 655 (781)
T 3v9f_A 651 FFNPD 655 (781)
T ss_dssp EECSC
T ss_pred EEChh
Confidence 56644
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-12 Score=137.81 Aligned_cols=238 Identities=11% Similarity=0.056 Sum_probs=168.8
Q ss_pred ecCCCccEEEEEECCCCC-EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 392 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
+..+.....+++|+|+|+ +++++..++.|..|+..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445667788999999998 7778888899999999886 33 4556777899999999998 67777667899999
Q ss_pred eCCCCceeEEecCC----CcceEEEeecccCCceEEEEEec-----------------CCeEEEEecCCCCceeeecCCC
Q 001367 471 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 529 (1091)
Q Consensus 471 d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~ 529 (1091)
|..+++........ ...+..++++ ++|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 98888765433221 1245667774 57777776321 2345555444 4444444555
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC-Ccee---eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iw 605 (1091)
.....++|+|+++.+++... ++.|++|++. +++. ...+.. ....+..++++++|+..++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 56789999999999844432 5679999986 5554 333321 23566789999999865555 8899999
Q ss_pred ECCCCeeEEEEeCCCCCCCCceEEE-ccCCCEEEEEECCCeEEEEECCCC
Q 001367 606 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
+.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 986 777777766543 688999 5899999998876 4555566544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=141.14 Aligned_cols=272 Identities=8% Similarity=0.032 Sum_probs=182.3
Q ss_pred cccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccC
Q 001367 705 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 784 (1091)
Q Consensus 705 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1091)
.+++|.++|..+..-...................+++. +++..++...++.+.+||...
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-------------------- 73 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT-------------------- 73 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT--------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcc--------------------
Confidence 36778888876433211110000011122345667774 445455555678888887543
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEE-eCCeEEEEEccCceeEEEecCCC-----CCeEEEEEcCCCCcEE
Q 001367 785 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI 858 (1091)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~~~~~l 858 (1091)
++.+.... .......++++++++..++. .++.|.+||..+++....+.... .....+++ . +++++
T Consensus 74 --~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 74 --FKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp --CCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred --cEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 33223221 23567899999999655555 37999999999999887766433 14566777 4 66666
Q ss_pred EEEe-CCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCC----------CcEEEEEcCCCceeeeeeeec
Q 001367 859 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT 927 (1091)
Q Consensus 859 a~g~-~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D----------g~i~vwd~~~~~~~~~~~~~~ 927 (1091)
++.. .++.|.++|+.+++.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 6554 4889999999999888777643 345789999999988876654 789999998876432 2222
Q ss_pred cCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeee-eecCCccCEEEEEEee-CCCEEEEE----EcCCcE
Q 001367 928 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSC-DCRMVFTS----FVDGTL 1001 (1091)
Q Consensus 928 ~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~v~fs~-dg~~l~t~----~~dg~v 1001 (1091)
..+ .....++|+||++.|.++.. .|.+||..+++.... +...+......++++| ++..+++. ..++.|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 14679999999999988655 999999998876432 2222246788999999 55555555 568899
Q ss_pred EEEeCCCCceEEEee
Q 001367 1002 SIHEASNLEVQCRIL 1016 (1091)
Q Consensus 1002 ~iwd~~~~~~~~~~~ 1016 (1091)
.+||.. |+.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 88887765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.2e-13 Score=146.00 Aligned_cols=241 Identities=12% Similarity=0.096 Sum_probs=158.9
Q ss_pred ccEEEEEECCCCCEEEEEE---------CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC---
Q 001367 397 VSVNRVVWSPDGSLLGVAY---------SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--- 464 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~---------~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d--- 464 (1091)
..+..+++ ||+++|... .++.|.+||+.+++.. .+ ..+..++|||||+ .|+..+.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~l----~~~~~~~~SpDg~--~la~~~~~~~~ 82 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----FI----ENATMPRISPDGK--KIAFMRANEEK 82 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----EE----ESCEEEEECTTSS--EEEEEEEETTT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----Ec----ccCCCeEECCCCC--EEEEEEeccCC
Confidence 46777888 999998753 2567999999887532 23 4688999999999 45555432
Q ss_pred C--cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC---------------------------CeEEEEe
Q 001367 465 K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---------------------------GKIKAWL 515 (1091)
Q Consensus 465 ~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------------------------g~i~iwd 515 (1091)
+ .|.+||+.+++.......+ . +..++|+ +|++.|+.++.+ ..|.+||
T Consensus 83 ~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~ws--pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 83 KVSEIWVADLETLSSKKILEAK-N-IRSLEWN--EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEES-E-EEEEEEC--TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred CcceEEEEECCCCceEEEEcCC-C-ccceeEC--CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence 3 4888898888765544433 3 8888885 467777777642 5689999
Q ss_pred cCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC----C-ceEEEEEecCCceeeEEEecccccccceEEEEEcCCC
Q 001367 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE----G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1091)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~----~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~ 590 (1091)
+.+++....+.. . .+..++|+||| .++++..+.. . ...|+++| +++....... ..+..+ +|+|
T Consensus 159 ~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-----~~~~~~--spdg 226 (347)
T 2gop_A 159 TESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-----VSFYAV--DSDG 226 (347)
T ss_dssp TTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-----ESEEEE--EECS
T ss_pred CCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-----cceeeE--CCCC
Confidence 987765233333 2 67889999999 6666644321 1 34577777 5554333322 234433 8999
Q ss_pred CEEEEEeCC--------CeEEEEECCCCeeEEEEeCCCCCCCCce-EEEccCCCEEEEEECCCeEEEEECCCCCeecccc
Q 001367 591 DQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 591 ~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
++++.++.+ ..|++|| +++.......+ ...+.. +.|+ ++ ++++++.++.+++| +.+++.. .+.
T Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~--~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~ 298 (347)
T 2gop_A 227 ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV--DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIA 298 (347)
T ss_dssp SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC--CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEE
T ss_pred CEEEEEEccccCCccccceEEEEC--CCceEeccccC--CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEe
Confidence 999887644 4688888 55543333222 224565 8899 88 88999999999999 8755443 333
Q ss_pred cccccceeeeec
Q 001367 662 VLSDNLRKLSVN 673 (1091)
Q Consensus 662 ~~~~~v~~~~~~ 673 (1091)
.+...+.+++++
T Consensus 299 ~~~~~v~~~~~s 310 (347)
T 2gop_A 299 KGRHWIMGFDVD 310 (347)
T ss_dssp CSSSEEEEEEES
T ss_pred cCCCeEEeeeee
Confidence 335567777773
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-10 Score=125.80 Aligned_cols=236 Identities=11% Similarity=0.009 Sum_probs=162.8
Q ss_pred ccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCC
Q 001367 734 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 813 (1091)
Q Consensus 734 ~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 813 (1091)
..+..+++.++|...++...++.+..|+.... .....++ .....+..+++.++|
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------------------------~~~~~~~--~~~~~~~~i~~~~~g 110 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKGI------------------------IKEYTLP--NPDSAPYGITEGPNG 110 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSC------------------------EEEEECS--STTCCEEEEEECTTS
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCCc------------------------EEEEeCC--CcCCCceeeEECCCC
Confidence 35678889999987776666788888774310 1111111 134568899999999
Q ss_pred CEEEEEe-CCeEEEEEccCceeEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee-eccccCCeEE
Q 001367 814 AYLFSAS-GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTG 890 (1091)
Q Consensus 814 ~~la~~~-dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~-l~~h~~~V~~ 890 (1091)
+++++.. ++.|..||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.+
T Consensus 111 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 187 (299)
T 2z2n_A 111 DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVG 187 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCccee
Confidence 8888775 688999998 5554432 233456789999999 7888777777789999998 6665432 3444567889
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCccee
Q 001367 891 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCL 969 (1091)
Q Consensus 891 l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~ 969 (1091)
++++++|+++++...++.|.+||. ++.... +... ... ..+..++++++|++.++. .++.|..||. +++.
T Consensus 188 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~- 257 (299)
T 2z2n_A 188 ITKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIP-TPN---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII- 257 (299)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-STT---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-
T ss_pred EEECCCCCEEEEccCCceEEEECC-CCcEEE---EECC-CCC---CCceeEEECCCCCEEEeccCCceEEEECC-CCce-
Confidence 999999998887777889999999 554321 2111 111 258899999999977775 5689999998 4543
Q ss_pred eee-ecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 970 KQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 970 ~~~-~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
..+ ...+...+.++++ ++|.++++.. .+.+..++..+++
T Consensus 258 ~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 258 EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 332 3344567899999 9888777654 5677777776653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-13 Score=163.67 Aligned_cols=249 Identities=9% Similarity=-0.069 Sum_probs=162.9
Q ss_pred cCCCCcEEEEEcCCCceEEEEE----cCCCcEEEEEcCCCCce-eeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg----~~dg~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
+|...+..++|||||++|+++. +.+.+|++||+.+|+.+ .. . +.+. ....++|+|
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp 177 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP 177 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence 5666799999999999654443 33468999999999865 21 0 1111 126789999
Q ss_pred CCCEEEEEECCCE-------------EEEEEeeCCcccc-eeEEEeccccCeeEEEEcCCCCceEEEEeeCCC----cEE
Q 001367 407 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK 468 (1091)
Q Consensus 407 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~----~i~ 468 (1091)
||+.|+.++.|.. |++|++.++.... .......|...+..+.|||||+. |+.++.++ .|.
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY 255 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence 9999999988766 9999999876321 11122345567899999999995 44444344 677
Q ss_pred EEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEe---cCCeEEEEecCCCCc---eeeecCC-CCcEEEEEEcCCC
Q 001367 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG 541 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~-~~~i~~~~~s~d~ 541 (1091)
+||..+++ ...+..+...+....+ +++.+++... .++.|.+||+++... ...+... ...+..++++ ++
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG 330 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence 77765554 4445455555555554 2445444443 257899999987653 3333333 4467788887 55
Q ss_pred CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe----CCCeEEEEECCCCee
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 612 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 612 (1091)
..+++... ++...|.+++.. ++..+.+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 56666554 234456666654 44455555432 25677788899988777432 357899999998874
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-12 Score=134.71 Aligned_cols=222 Identities=8% Similarity=-0.019 Sum_probs=163.5
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecccc-CCe
Q 001367 812 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV 888 (1091)
Q Consensus 812 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V 888 (1091)
.++.|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777776 7999999999999999998766 4789999999 888888 45778999999 899998887653 478
Q ss_pred EEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecc-CCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCC
Q 001367 889 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 965 (1091)
Q Consensus 889 ~~l~~spdg~~las~s~-Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~ 965 (1091)
.++.+.+||+++++.+. ++.|..+|.+ ++......+... .++. .....+++.++|+++++. .++.|..||.+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 7777777764 333222221111 1111 135567889999999985 67899999998
Q ss_pred cceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeE
Q 001367 966 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1045 (1091)
Q Consensus 966 ~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1045 (1091)
|+.+..+..+ ..+.++.+.++|..+++++.+++|..+|..+|+.+-++.... ++.. .-..+..++..+ +|.++
T Consensus 155 G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~~~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IEGV---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SBSC---CCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CCCc---cccccccceEcC-CCCEE
Confidence 9988876542 355678889999999988888899999999999987776221 1110 012334556666 46777
Q ss_pred EEEe
Q 001367 1046 AVGL 1049 (1091)
Q Consensus 1046 ~~g~ 1049 (1091)
++..
T Consensus 228 v~~~ 231 (276)
T 3no2_A 228 ICNW 231 (276)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6663
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-12 Score=135.87 Aligned_cols=241 Identities=8% Similarity=-0.046 Sum_probs=165.9
Q ss_pred CcEEEEEcCCCceEEE-EEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 336 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~lla-sg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
...+++++|+|+ +++ +...++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 778999999998 666 556779999999766543211 11233567889999999966665
Q ss_pred ECCCEEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEee
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1091)
. ++.|.+||..++... .+. .....+..++++++|+ ++++...++.|.+|+..+.............+..+++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765321 122 2335688999999998 6777777889999986555443322233345677888
Q ss_pred cccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEec
Q 001367 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1091)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1091)
++ ++.++++...++.|.+||................+.+++++++|..+++... ++.|.+|+..+.........
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence 54 5667777777899999998765544333333356889999999976665533 45699999876543322111
Q ss_pred ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 001367 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1091)
Q Consensus 574 ~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1091)
. ...+.+++++++|+.+++...++.|+++++...+.
T Consensus 232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 1 24688999999998778888899999999876543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-12 Score=158.11 Aligned_cols=247 Identities=10% Similarity=0.053 Sum_probs=163.2
Q ss_pred CCCccEEEEEECCCCCEEEEEECC-----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC---
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 465 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--- 465 (1091)
+|...+..++|||||++||.++.+ ..|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.++
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 345578999999999999988654 4699999999875431 112223468899999 8 555555544
Q ss_pred -----------cEEEEeCCCCce--eEEecC--CCcceEEEeecccCCceEEEEEecCC-----eEEEEecCCC--Ccee
Q 001367 466 -----------TIKVWDAVTGSR--TYSFEG--HGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV 523 (1091)
Q Consensus 466 -----------~i~iwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~ 523 (1091)
.|++|++.++.. ...+.. +...+..+.+ ++||++|+..+.++ .|++||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 389999987753 223332 3334677777 56788888777554 7999999876 3133
Q ss_pred eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc--eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCe
Q 001367 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1091)
Q Consensus 524 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~ 601 (1091)
.+..+....... ++|+|+.|+..+..+..+..|++||+.++ .....+..+. ..+..+.+. ++..+++...++.
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence 343333344444 34899999888765444778999999875 3333343333 456677777 4566677888888
Q ss_pred EEEEECC-CCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC----CCeEEEEECCCCC
Q 001367 602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1091)
Q Consensus 602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1091)
.++|.++ ++.....+..+. ...+..+.++|+++.++.... .++|++||+.+++
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777544 455556555432 234678889999886664332 4789999998764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-11 Score=136.15 Aligned_cols=205 Identities=14% Similarity=0.079 Sum_probs=141.9
Q ss_pred eEEEecCCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee-
Q 001367 805 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK- 880 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~- 880 (1091)
..++++|||++++++. ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||++.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4567888888888875 36899999999999988874321 233442445666677788888888765554422
Q ss_pred ---eccccCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCc----CCCCCceEEEEcCCCCEEEE
Q 001367 881 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 881 ---l~~h~~~V-~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~l~fs~dg~~la~ 952 (1091)
+.....++ ..+.|+++++.++..+..+.|.+.|+.+........+....... ..+.....++|+||++.+.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22112222 23578999988888888899999999765432211111110000 00012334799999998777
Q ss_pred Ee-----------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCC-EEEEEE-cCCcEEEEeCCCCceEEEe
Q 001367 953 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 953 ~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~-~l~t~~-~dg~v~iwd~~~~~~~~~~ 1015 (1091)
.. ++.|.++|..+.+.+..+..+ .....++|+|||+ +++++. .++.|.++|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 357999999999999887654 3588999999999 888887 5899999999999999876
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-10 Score=123.11 Aligned_cols=280 Identities=10% Similarity=0.027 Sum_probs=189.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.....+.+++++++|+ +.++...++.|.+||.. ++.... . +..+...+.++++.++|++.
T Consensus 17 ~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~---~---------------~~~~~~~~~~i~~~~~g~l~ 76 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF---E---------------VPTPDAKVMCLIVSSLGDIW 76 (300)
T ss_dssp STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE---E---------------CSSTTCCEEEEEECTTSCEE
T ss_pred CCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE---E---------------CCCCCCcceeEEECCCCCEE
Confidence 3345889999999998 66666677999999987 553321 0 22344679999999999988
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE-EecCCCcceEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYS 490 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~ 490 (1091)
++...++.|..||.. ++. . ...+......+..+++.++|+ ++++...++.|..||.. ++... .+......+..
T Consensus 77 v~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 77 FTENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp EEETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred EEecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 877667889999987 443 2 112233446789999999998 66766667899999977 65542 23334456778
Q ss_pred EeecccCCceEEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE
Q 001367 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
+++. +++.+.++...++.|..++. .++... ........+..++++++|+..++... .+.|.++|. +++...
T Consensus 151 i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 151 ITLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISE 222 (300)
T ss_dssp EEEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE
T ss_pred EEEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEE
Confidence 8874 45666666666888999988 333322 22233456889999999986665532 446999998 554433
Q ss_pred EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEE
Q 001367 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1091)
Q Consensus 570 ~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1091)
..... ....+.+++++++++..++...++.|..|+. +++.. .+........+.+++++++|++.++.. . .|..+
T Consensus 223 ~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 223 YDIPT--PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred EECCC--CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 21111 1356889999999886666656789999998 45443 333332234578999999988555444 4 67666
Q ss_pred EC
Q 001367 650 ET 651 (1091)
Q Consensus 650 d~ 651 (1091)
+.
T Consensus 297 ~p 298 (300)
T 2qc5_A 297 NL 298 (300)
T ss_dssp EE
T ss_pred CC
Confidence 64
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.46 E-value=9e-12 Score=132.29 Aligned_cols=240 Identities=10% Similarity=-0.057 Sum_probs=165.6
Q ss_pred cEEEEEECCCCCEEE-EEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 398 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 398 ~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
...+++++++|++++ +...++.|.+|+..++.... ....+...+.+++++++|+ ++++.. ++.|.+||..++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 788999999999777 44677899999976653211 1123335688999999998 566555 8899999976554
Q ss_pred eeEEec-CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 477 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 477 ~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
. ..+. .....+..+++.+ ++.++++...++.|.+|+..+.............+.+++++++|+.+++... .+
T Consensus 99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~ 171 (270)
T 1rwi_B 99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 171 (270)
T ss_dssp C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence 3 3333 2335678888854 6677777778899999976554433322223345778999999986665532 45
Q ss_pred EEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC
Q 001367 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1091)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1091)
.|.+||..+........... ..+..++++++|..+++...++.|.+|+..+..... ... .+...+..++++++|+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT 246 (270)
T ss_dssp EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence 79999988765443322222 568899999999766666678899999987654433 221 1223578999999999
Q ss_pred EEEEEECCCeEEEEECCCCC
Q 001367 636 LLAVIANENRIKILETPESN 655 (1091)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~~ 655 (1091)
++++...++.|++++....+
T Consensus 247 l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCEEEEEcCCCcc
Confidence 88888889999999987553
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-11 Score=136.34 Aligned_cols=281 Identities=11% Similarity=0.094 Sum_probs=189.8
Q ss_pred CCCceEEEEEcCC----CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE----
Q 001367 344 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 415 (1091)
Q Consensus 344 pdg~~llasg~~d----g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 415 (1091)
|+++++.++...+ ++|.+.|..+++.+.+.. --..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~-------------------vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD-------------------GGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE-------------------ECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE-------------------CCCCC--ceEECCCCCEEEEEecccc
Confidence 4666665665544 799999999999886522 12234 799999999998876
Q ss_pred ------CCCEEEEEEeeCCcccceeEEEe--c---cccCeeEEEEcCCCCceEEEEee--CCCcEEEEeCCCCceeEEec
Q 001367 416 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 416 ------~d~~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~ 482 (1091)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987665332 22 0 1123567899999994 55544 36889999999999988876
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee----ecCCCCc-EEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
.... ....+... ..+++.+.||.+.+.+....+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4221 12222222 4566677788888777744433321 1212222 123567899888777654 4569
Q ss_pred EEEecCCceee--EEEecc-----c--ccccceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeEEEEeC
Q 001367 558 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 558 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~v~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~ 618 (1091)
++.|...+... ..+... . ........++++|+++++++... .+.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111110 0 00011223689999998887642 35799999999999999876
Q ss_pred CCCCCCCceEEEccCCC-EEEEEE-CCCeEEEEECCCCCeeccc
Q 001367 619 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA 660 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1091)
... ...++|+||++ ++++.. .++.|.++|..+.+.+..+
T Consensus 369 g~~---P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 GHE---IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEE---ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCC---cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 542 58999999999 888888 5899999999999888765
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-12 Score=153.58 Aligned_cols=248 Identities=11% Similarity=0.016 Sum_probs=158.1
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCC----cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+|...+..++|||||++|+.+.+.+| .|++||+.+|+.+.. . . +...+..++||||
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD 219 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN 219 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC
Confidence 34457889999999996655544334 599999999987542 0 0 1122357899999
Q ss_pred CCEEEEEECCCE--------------EEEEEeeCCcccceeEEEe--ccccCeeEEEEcCCCCceEEEEeeC-----CCc
Q 001367 408 GSLLGVAYSKHI--------------VQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGD-----DKT 466 (1091)
Q Consensus 408 g~~las~~~d~~--------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~-----d~~ 466 (1091)
+.|+.++.++. |++|++.++...... .+. .+...+..+.|||||++ |+..+. ...
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP-VFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNT 295 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE-EeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcce
Confidence 99999876553 889998776532211 222 23345889999999994 444443 348
Q ss_pred EEEEeCCCC--ceeEEecCCCcceEEEeecccCCceEEEEEec----CCeEEEEecCCCC-c-eeeecCCCCcEEEEEEc
Q 001367 467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-A-RVDYDAPGLGCTRMAYS 538 (1091)
Q Consensus 467 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~-~~~~~~~~~~i~~~~~s 538 (1091)
|.+||+.++ ++...+..+...+....+ +++..|+..+. ++.|.+||+++.. . ...+..+...+..++++
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA 372 (741)
T ss_dssp EEEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred EEEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence 999999887 424555555555544432 35566666665 3459999988742 2 33344444456677776
Q ss_pred CCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE-e---CCCeEEEEECCCCee
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-G---DDHVIKIWDMNKVQL 612 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-s---~dg~i~iwd~~~~~~ 612 (1091)
++..+++... ++...|++++.. +...+.+.... ...+..+.++|+++.++.. + ..++|++||+.+++.
T Consensus 373 -~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 -GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp -BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred -CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4445555543 335556667764 44555554322 3578889999998866643 2 357899999998873
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-09 Score=117.74 Aligned_cols=277 Identities=9% Similarity=0.039 Sum_probs=187.0
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
....+.++++.++|...++...++.+.+|+.. .. .....+. .....+..+++.+
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-----------------------~~~~~~~--~~~~~~~~i~~~~ 71 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-----------------------IKEFEVP--TPDAKVMCLIVSS 71 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-----------------------EEEEECS--STTCCEEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-----------------------eEEEECC--CCCCcceeEEECC
Confidence 34578899999999977776677888888744 11 1111111 1345688999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEE-EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceee-eeccccCCe
Q 001367 812 NDAYLFSAS-GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRV 888 (1091)
Q Consensus 812 dg~~la~~~-dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~-~l~~h~~~V 888 (1091)
+|.+.++.. ++.|..||.. ++... ........+..+++.+ +++++++...++.|..|+.. ++... .+......+
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence 999887766 5889999987 55432 2222346789999999 78888777778899999987 65442 233345678
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcc
Q 001367 889 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT 967 (1091)
Q Consensus 889 ~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~ 967 (1091)
.++++.++|+++++...++.|..++. +++... +... ... ..+..++++++|.+.++. ..+.|.+||. +++
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TNA---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-STT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CCC---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence 99999999997777766788999998 444221 2211 111 257899999999887775 4568999998 555
Q ss_pred eeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEE
Q 001367 968 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1047 (1091)
Q Consensus 968 ~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~ 1047 (1091)
........+...+.+++++++|++.++...++.|..|+. ++... .+. ++.. .. .+..++.+|+ |.++++
T Consensus 220 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~~--~~~~i~~~~~-g~l~v~ 288 (300)
T 2qc5_A 220 ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--NA--EPHGITFGKD-GSVWFA 288 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--TC--CCCCEEECTT-SCEEEE
T ss_pred EEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--CC--ccceeEeCCC-CCEEEE
Confidence 443323334567899999999997776656789999998 45443 222 1111 11 2345678884 665554
Q ss_pred EecCCcEEEEec
Q 001367 1048 GLTNGEVYVIEP 1059 (1091)
Q Consensus 1048 g~~dg~v~~w~~ 1059 (1091)
.. . .|..+++
T Consensus 289 ~~-~-~i~~~~p 298 (300)
T 2qc5_A 289 LK-C-KIGKLNL 298 (300)
T ss_dssp CS-S-EEEEEEE
T ss_pred cc-C-ceEEeCC
Confidence 44 4 7777765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-10 Score=125.62 Aligned_cols=250 Identities=13% Similarity=0.101 Sum_probs=164.2
Q ss_pred ccCCCCcEEEEEcCCCceEEEE-------EcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llas-------g~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.+.-....+++|+++|+ ++++ +..++.|.+||..+++.... . .....++...+.+++
T Consensus 14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~------------~~~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C------------KPEVNGYGGIPAGCQ 77 (314)
T ss_dssp ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E------------CCEETTEECCEEEEE
T ss_pred hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E------------ecccCCCCCCCceEE
Confidence 33444789999999997 6666 56678999999888875421 0 000123446789999
Q ss_pred ECCC-CCEEEEEECCCEEEEEEeeCCcccce-eEEEec-cccCeeEEEEcCCCCceEEEEeeCC---------------C
Q 001367 404 WSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------K 465 (1091)
Q Consensus 404 ~spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d---------------~ 465 (1091)
++++ |+++++.. .+.|.+||.. ++.... .....+ ....+.+++++++|+ +.++...+ +
T Consensus 78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence 9999 76555543 4479999987 543211 000001 123588999999998 55655544 5
Q ss_pred cEEEEeCCCCceeEEecCCCcceEEEeec--ccCCceEE-EEEecCCeEEEEecCC-CC-----ceeeecCCC-CcEEEE
Q 001367 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFI-FSISVDGKIKAWLYDS-LG-----ARVDYDAPG-LGCTRM 535 (1091)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l-~s~~~dg~i~iwd~~~-~~-----~~~~~~~~~-~~i~~~ 535 (1091)
.|..||.. ++..... .+......++++ ..+++..+ ++...++.|.+|+++. +. ....+..+. .....+
T Consensus 154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 67788765 5543322 233445677774 11566555 4445688999999862 22 111222232 567889
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 609 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~~ 609 (1091)
+++++|+.+++... ++.|.+||..+++.+..+..+. ..+.+++|+|+++.|+++ ..++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999988777643 4569999998787776666544 678999999999966655 4568899998764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-10 Score=125.14 Aligned_cols=245 Identities=9% Similarity=0.066 Sum_probs=164.3
Q ss_pred ccEEEEEEecCCCeEEE-------eecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCC-CCCCCCCee
Q 001367 734 NKISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT-DSNSQEAVP 805 (1091)
Q Consensus 734 ~~i~~~~~s~dg~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~ 805 (1091)
....+++|+++|..+++ ...++.+.+|+...... .....+ ..++...+.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-----------------------~~~~~~~~~~~~~~~~ 74 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-----------------------TVICKPEVNGYGGIPA 74 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-----------------------EEEECCEETTEECCEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-----------------------EEEEecccCCCCCCCc
Confidence 34578899999986666 46678888887543221 000000 001335688
Q ss_pred EEEecCC-CCEEEEEeCCeEEEEEccCceeEEE-ecC----CCCCeEEEEEcCCCCcEEEEEeCC---------------
Q 001367 806 CFALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD--------------- 864 (1091)
Q Consensus 806 ~l~~s~d-g~~la~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~~~~~la~g~~d--------------- 864 (1091)
.++++++ |+++++...+.|.+||.. ++.... ... ....+..+++++ +++++++...+
T Consensus 75 ~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 1pjx_A 75 GCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred eEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCC
Confidence 9999999 776666656689999988 665433 221 123578999999 78877766655
Q ss_pred CeEEEEeccCcceeeeeccccCCeEEEEEC----CCCCEEEEE-eCCCcEEEEEcC-CCceeeeeeeeccCCCcCCCCCc
Q 001367 865 STILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSS-GGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSE 938 (1091)
Q Consensus 865 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~las~-s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~i 938 (1091)
+.|..|+.. ++... +..+......++|+ |+++.|..+ ..++.|.+|+++ ++.......+....++.. ..+
T Consensus 153 ~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p 228 (314)
T 1pjx_A 153 GSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGA 228 (314)
T ss_dssp EEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEE
T ss_pred CeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCC
Confidence 577778765 55433 33344557889999 999765444 567899999987 444322223333333210 146
Q ss_pred eEEEEcCCCCEEEEE-ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEE-EEEcCCcEEEEeCCC
Q 001367 939 THIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1008 (1091)
Q Consensus 939 ~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~-t~~~dg~v~iwd~~~ 1008 (1091)
..++++++|+++++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+ +...++.|..|++..
T Consensus 229 ~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 789999999988874 6789999999877766554 34457899999999999555 444567899999875
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-10 Score=124.17 Aligned_cols=174 Identities=9% Similarity=0.058 Sum_probs=135.4
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEccCce-----------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 870 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iw 870 (1091)
..+..+++++...++++++...+.+|++++.. ...... +.. |+.++| ++++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36899999999999999998888889987544 112222 445 999999 56788888 88999999
Q ss_pred eccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEE
Q 001367 871 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 950 (1091)
Q Consensus 871 d~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~l 950 (1091)
|+.+.........|..++.++.+.+.. +++++.||.|.+||++++.... +. ..|++++|||+| ..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---------~~---~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---------LA---QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---------EE---ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---------cc---CCceEEEEcCCc-eE
Confidence 998876666667788889988887653 8889999999999999765321 11 259999999999 44
Q ss_pred EEEecCeEEEEEcCCcce--eeeee-----c---CCccCEEEEEEeeCCCEEEEEE
Q 001367 951 LLVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 951 a~~~d~~i~vwd~~~~~~--~~~~~-----~---~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
+...||++++|+...++. ...+. . +|...|.+|.|.+++.++++-+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 447899999999887775 33331 1 3678999999999999988644
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.2e-10 Score=124.92 Aligned_cols=242 Identities=12% Similarity=0.011 Sum_probs=163.3
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..++.++|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 3788999999998 778888889999999988765432 112 22233 9999999999998
Q ss_pred ECCC--EEEEEEeeCCcccceeEEEec-cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE----ecCCCcc
Q 001367 415 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP 487 (1091)
Q Consensus 415 ~~d~--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~ 487 (1091)
..++ .|.+|+..++........+.. +...+.+++++|++. .|+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8765 788888877653322111112 445688999999555 244466788999999887764322 2222222
Q ss_pred e--EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC---------------CCcEEEEEEcCCCCEEEEEecC
Q 001367 488 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 488 v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
- ..+++++. ++.++++...++.|+.|+.+.. ...+... -.....++++++|+.+++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 27888653 4567777788899999987643 2222111 12467899999999666543
Q ss_pred CCCceEEEEEecCCceeeEEEeccc------------ccccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
.+...|+.|+..++.. ..+.++. ........+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0266799999877764 3343330 01245889999999777777777888887765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-10 Score=137.95 Aligned_cols=252 Identities=11% Similarity=0.046 Sum_probs=164.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcC----CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~----dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+|...+..++|||||++++.+.+. ..+|++||+.+|+.+.. . + +......++|+ |
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-G 184 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-T
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-C
Confidence 455678899999999966544433 35799999999986542 0 1 11113567899 9
Q ss_pred CCEEEEEECCC-------------EEEEEEeeCCcccce-eEEEec-cccCeeEEEEcCCCCceEEEEee---CCCcEEE
Q 001367 408 GSLLGVAYSKH-------------IVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV 469 (1091)
Q Consensus 408 g~~las~~~d~-------------~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~---~d~~i~i 469 (1091)
|+.|+.++.+. .|++|++.++..... +..... |...+..+.|+|||+++ +++.+ .++.|.+
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV 263 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence 99999998774 499999887653221 111123 44557889999999963 33333 2358999
Q ss_pred EeCCCCc-eeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCCCCc--eeeecCCCCcEEEEEEcCCCCE
Q 001367 470 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR 543 (1091)
Q Consensus 470 wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~ 543 (1091)
||+.++. ....+..+....... +.+. ++.+++....+ +.|..+++.+... ...+..+...+. .|+++++.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~ 339 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY 339 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence 9998774 455665666555544 3322 33444454443 5799999987654 233444444444 89999999
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeE
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL 613 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d----g~i~iwd~~~~~~~ 613 (1091)
|+..... ++...|++|++..+. .+.+.... ...+..+.++++++.++....+ ++++.||+.+++..
T Consensus 340 lv~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 340 LFAEYMV-DATARVEQFDYEGKR-VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEEE-TTEEEEEEECTTSCE-EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEEE-CCeeEEEEEECCCCe-eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8877643 345679999988554 34443222 2457777888888877765443 88999999887643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-09 Score=116.94 Aligned_cols=228 Identities=10% Similarity=0.045 Sum_probs=150.4
Q ss_pred cEEEEEEecCCCeEEEe-ecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCC
Q 001367 735 KISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 813 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 813 (1091)
-.....|++++..++.. ..++.|..|+.... . ..... ....+.+++++++|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK----------------------Q-VQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTC----------------------C-EEEEE-----CSSCEEEEEEBTTS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEe-----CCCceEEEEECCCC
Confidence 45578899966555544 45688888875432 1 11111 24568899999999
Q ss_pred CEEEEEeCCeEEEEEccCceeEEEecC----CCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEeccC-cceee
Q 001367 814 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS 879 (1091)
Q Consensus 814 ~~la~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~~la~g~~d---------g~i~iwd~~~-~~~~~ 879 (1091)
+++++ .++.|.+||..+++....... ....+..++++| +|+++++...+ ..-.+|.+.. ++. .
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~ 142 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K 142 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence 95554 578899999988765433321 123578899999 78876654321 2234554443 333 2
Q ss_pred eeccccCCeEEEEECCCCCEEE-EEeCCCcEEEEEc--CCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ec
Q 001367 880 KLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 955 (1091)
Q Consensus 880 ~l~~h~~~V~~l~~spdg~~la-s~s~Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d 955 (1091)
.+..+......++|+||++.|. +.+.++.|.+|++ .++.....+.+....... .....++++++|++.++. ..
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 3333445578899999998764 5556788999998 455443333333332221 246789999999988775 45
Q ss_pred CeEEEEEcCCcceeeeeecCCccCEEEEEEe-eCCCEEEEEEc
Q 001367 956 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV 997 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs-~dg~~l~t~~~ 997 (1091)
+.|.+||..+++.+..+.. +...+++++|. ||++.|++++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~~-p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKL-PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEEC-SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEEC-CCCCceEEEEeCCCCCEEEEEcC
Confidence 7899999998988877543 35689999999 89887766554
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-09 Score=117.87 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=155.2
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 410 (1091)
..+..-..+..|+|++..++++...++.|..||..+++... + .....+.+++++|+|++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l 67 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGY 67 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCE
Confidence 34444667899999776788888889999999998876431 1 13467999999999996
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEec--cccCeeEEEEcCCCCceEEEEe-eC--------CCcEEEEeCCCCceeE
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITC-GD--------DKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~~~l~s~-~~--------d~~i~iwd~~~~~~~~ 479 (1091)
+++ . ++.|.+||..+++.. .+..... ....+..++++|+|+ +.++. +. ...-.||.+.....+.
T Consensus 68 ~v~-~-~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 142 (297)
T 3g4e_A 68 VAT-I-GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK 142 (297)
T ss_dssp EEE-E-TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred EEE-E-CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence 555 3 567999999876532 2111111 123588999999998 44443 21 1223455444222222
Q ss_pred EecCCCcceEEEeecccCCceEE-EEEecCCeEEEEecC--CCCce-----eeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~-----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
.+..+....+.++|++ +++.+ ++.+.++.|.+|+++ ++... ..+.........++++++|+..++...
T Consensus 143 ~~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-- 218 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-- 218 (297)
T ss_dssp EEEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET--
T ss_pred EEeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC--
Confidence 3333344567788854 55544 566678899999984 33211 112222346788999999987776643
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEc-CCCCEEEEEeC
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 598 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~s~ 598 (1091)
.+.|..||..+++.+..+..+. ..+.+++|. |+++.|++++.
T Consensus 219 --~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 --GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp --TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred --CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence 4569999999999888887654 678999998 88888777653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.28 E-value=7e-10 Score=119.77 Aligned_cols=240 Identities=12% Similarity=0.041 Sum_probs=160.7
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
...+..|..+.......+|+|+|+.|++++..++.|..|+. +++.. . +..+...+..++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~ 92 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNA 92 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceee
Confidence 34455566666688999999999988899988999999997 45422 1 223556789999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEecc-ccCeeEEEEcCCCCceEEEE----eeC-------------CC
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DK 465 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~~~l~s----~~~-------------d~ 465 (1091)
++++|+++++...++.|.+|+.. ++.........+. ...+.++++.++|+ +.++ |.. .+
T Consensus 93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 93 VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCC
Confidence 99999977766666789999986 4421111111111 13577899999998 6665 321 25
Q ss_pred cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC------CeEEEEecCCCCc---eeeecCCCCcEEEEE
Q 001367 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMA 536 (1091)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~---~~~~~~~~~~i~~~~ 536 (1091)
.|..||..+++..... .......++|+ +++..|+.+... +.|.+|++..... .............++
T Consensus 170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp EEEEECSSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred eEEEEcCCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence 6888887777654433 33456778884 466666666554 7899999875431 111122233455789
Q ss_pred EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeE
Q 001367 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i 602 (1091)
++++|+..++. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++..
T Consensus 246 ~d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 246 VDRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp ECTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTEEE
T ss_pred ECCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCeEE
Confidence 99999955443 2 2 3999998 566666666543 47889999999999888876533
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-09 Score=121.35 Aligned_cols=249 Identities=10% Similarity=-0.011 Sum_probs=163.8
Q ss_pred CCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeccCccee
Q 001367 802 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 878 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg--~i~iwd~~~~~~~ 878 (1091)
.....++++++|+++++.. ++.|++||..++........ ..... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4678999999999666665 58999999998877655544 23334 99999 788888887766 8999998766543
Q ss_pred eee----ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-
Q 001367 879 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 953 (1091)
Q Consensus 879 ~~l----~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~- 953 (1091)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+... ..+...++|+|++..|.++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~-~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG-TNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC-CSSCCEEEEETTTTEEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC-CCccccEEEeCCCCEEEEEe
Confidence 333 224566889999995555555777889999999876532211100 111111 0011399999965555443
Q ss_pred -ecCeEEEEEcCCcceeeeeecCC---------------ccCEEEEEEeeCCCEEEEEE-cCCcEEEEeCCCCceEEEee
Q 001367 954 -HETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 954 -~d~~i~vwd~~~~~~~~~~~~~h---------------~~~v~~v~fs~dg~~l~t~~-~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
.++.|+.|+.... +..+ .++ -.....++++++|.++++-. .+++|+.|++.+|.......
T Consensus 286 ~~~~~I~~~~~~g~--~~~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWF-CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TTTTEEEEECTTCC--EEEE-EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCC--EEEE-EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 5678999987643 2221 121 13578999999999777777 78899999988887543322
Q ss_pred cccccC--CC--CcccccceeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 1017 STAYLR--PT--TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1017 ~~~~~~--~~--~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
...... .+ ....--.|..++++|+ +.++++-..++.|+.+.+
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 100000 00 0001134678899995 788888888889988876
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=127.77 Aligned_cols=272 Identities=11% Similarity=0.023 Sum_probs=173.4
Q ss_pred CCcEEEEEcCCCceEEEEEc--CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~--~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
..+..++++|+|+ ++++.. .++.+.||.+.+|+.. .++-|. ....+|-..+..++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 556653 2343666766555432 121111 01234667899999999998766
Q ss_pred EEEC-----CCEEEEEEeeCCcccceeEEEe----ccccCeeEEEEcCCCCceEEEEee---CCCcEEEEeCCCCceeEE
Q 001367 413 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 413 s~~~-----d~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~ 480 (1091)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999988644422 221 12235689999987653 445555 678999999999987777
Q ss_pred ecCCCcceE-EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 481 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 481 ~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
+.+|..... ...+ ..++..+.+.+.+|.++.|. ..+..++++|||+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 765532211 0222 22456677777788876663 135789999999988887642 224555
Q ss_pred EecC---Cce-----eeE--EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 560 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 560 wd~~---~~~-----~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
++.. .+. ... ...++. .....++++++|..+++...++.|.+||..+++........ .......++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va 297 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN 297 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence 5532 110 000 111222 34567899999988888888999999998667654443322 223467899
Q ss_pred EccCCCEEEEEECCCe
Q 001367 630 FNKNGTLLAVIANENR 645 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~ 645 (1091)
|.+++.++++....+.
T Consensus 298 ~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHH 313 (343)
T ss_dssp ECTTSCEEEEECCGGG
T ss_pred ECCCCcEEEEeCcccc
Confidence 9998887777655433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-10 Score=125.92 Aligned_cols=196 Identities=11% Similarity=-0.003 Sum_probs=125.5
Q ss_pred eEEEecCCCCEEEEEe---CCeEEE--EEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC-----
Q 001367 805 PCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----- 874 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~----- 874 (1091)
..++++|||++++++. ++.+.+ +|..+ +.++..... ..+.|++.+.+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3567788888777775 256777 88877 344432111 123343455666677888888888886
Q ss_pred cceee----eeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecc------CCCcCCCCCceEEEEc
Q 001367 875 SEVIS----KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFH 944 (1091)
Q Consensus 875 ~~~~~----~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~l~fs 944 (1091)
++... .+.-...+. + ++++..++..+. +.|.+.|+.+........+... .+..+ .....++|+
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s 272 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL 272 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence 44332 111122333 3 666666666666 8999999976432111111111 11110 122337899
Q ss_pred CCCCEEEEE-e-c--------CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCE-EEEEE-cCCcEEEEeCCCCceE
Q 001367 945 KDQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSF-VDGTLSIHEASNLEVQ 1012 (1091)
Q Consensus 945 ~dg~~la~~-~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~-l~t~~-~dg~v~iwd~~~~~~~ 1012 (1091)
|||+.+.++ . . +.+.++|+.+++.+..+..+ .....++|+|||++ +++.. .+++|.++|+.+++.+
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 999988874 3 2 36779999999998886654 36889999999984 55665 5899999999999999
Q ss_pred EEee
Q 001367 1013 CRIL 1016 (1091)
Q Consensus 1013 ~~~~ 1016 (1091)
.++.
T Consensus 351 ~~I~ 354 (368)
T 1mda_H 351 SSVE 354 (368)
T ss_dssp EECC
T ss_pred EEEE
Confidence 7775
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-05 Score=94.51 Aligned_cols=522 Identities=9% Similarity=-0.006 Sum_probs=289.5
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
+|+.+ ..+.|+..++.+..... ...+ ..-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEc-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 45668888887654211 1112 22346789999997774 455566688999999775544333332224566
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
.+++.+. .+.+.++-...+.|.+.+++...........-.....+++.|....|+..-.. ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 7777543 34566666777889999987655444443444567899999976666655321 14568888876554433
Q ss_pred EEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEE
Q 001367 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1091)
Q Consensus 570 ~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1091)
.... ......++++++++.|+.+. ..+.|...|++.... ..+... ......+++.. +.++++-...+.|..
T Consensus 161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 3332 25788999999888877765 567899999876544 233222 12345677764 444444445788999
Q ss_pred EECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecC
Q 001367 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 728 (1091)
Q Consensus 649 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 728 (1091)
.|..++.....+.........+.+....... +.+.+.. ....|..+.+.
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~~n~C~~-----------------------------~ng~C~~~C~~ 281 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--GWNECAS-----------------------------SNGHCSHLCLA 281 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC--CCCTTTT-----------------------------TGGGCSSEEEE
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc--cceEecc-----------------------------CCCCcchhhhc
Confidence 9987776555444333333333322111100 0000000 00001100000
Q ss_pred CccccccEEEE-----EEecC-------CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCC
Q 001367 729 SKVKANKISRL-----TYNNG-------GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 796 (1091)
Q Consensus 729 ~~~~~~~i~~~-----~~s~d-------g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1091)
. ..+...+. ...+| ..+++.+. ...|+-..+... ... ......
T Consensus 282 ~--~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~--------------------~~~-~~~l~~- 336 (628)
T 4a0p_A 282 V--PVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQ--------------------QSP-DIILPI- 336 (628)
T ss_dssp E--TTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTT--------------------CCC-CEECCC-
T ss_pred C--CCCCeeEEcCCCcEecccCCcCccccceeeeec-cceEEEEecccc--------------------cCc-eEEEEe-
Confidence 0 00000000 01111 12222222 223332221110 000 001111
Q ss_pred CCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecC------CCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 001367 797 DSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTIL 868 (1091)
Q Consensus 797 ~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~~la~g~~dg~i~ 868 (1091)
..-..+..++|.+.+..|..+. .+.|..+++........+.. ....+..+|+...++++..+-+..+.|.
T Consensus 337 --~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~ 414 (628)
T 4a0p_A 337 --HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVIN 414 (628)
T ss_dssp --TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred --hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEE
Confidence 1234577899999888888776 47888888764333233322 2346789999984455666667788999
Q ss_pred EEeccCcceeeee-ccccCCeEEEEECC-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEc
Q 001367 869 IYNARSSEVISKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 944 (1091)
Q Consensus 869 iwd~~~~~~~~~l-~~h~~~V~~l~~sp-dg~~las~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs 944 (1091)
+.++. |+....+ ........+|++.| .|.++.+-.... .|...+++..... ..+. ... .....++++
T Consensus 415 v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~--~l~~---~~l---~~P~gla~D 485 (628)
T 4a0p_A 415 VTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE--VLFF---SGL---SKPIALALD 485 (628)
T ss_dssp EEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE--EEEC---SSC---SCEEEEEEE
T ss_pred EEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE--EEEe---ccC---CCccEEEEe
Confidence 99986 5544343 33456789999999 555555533332 5666667653311 1111 111 246799999
Q ss_pred CCCCEEEEEe--cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEe
Q 001367 945 KDQTRFLLVH--ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 945 ~dg~~la~~~--d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~ 1015 (1091)
++++.|..+. .+.|..+++. |.....+..........++... +..+.+=...+.|...|-.+|+....+
T Consensus 486 ~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 486 SRLGKLFWADSDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred CCCCEEEEEeCCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 9988887753 4689999985 4444444433344567777654 444444445567888888777654433
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-10 Score=137.42 Aligned_cols=245 Identities=10% Similarity=0.075 Sum_probs=160.2
Q ss_pred CCCccEEEEEECCCCCEEEEEE-----CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC---
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 465 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--- 465 (1091)
+|...+..++|||||++||.+. ...+|++||+.+|+.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCccc
Confidence 4666889999999999999653 235799999999875432 1211 123578999 999 566665553
Q ss_pred ----------cEEEEeCCCCce--eEEe--cC-CCcceEEEeecccCCceEEEEEec----CCeEEEEecCCCC-ceeee
Q 001367 466 ----------TIKVWDAVTGSR--TYSF--EG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 525 (1091)
Q Consensus 466 ----------~i~iwd~~~~~~--~~~~--~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~ 525 (1091)
.|++|++.++.. ...+ .. |...+.++.+ ++|+++|+.... ++.|+++|+.+.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987653 2223 33 3444566777 557777755433 2479999988764 33444
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee--eEEEecccccccceEEEEEcCCCCEEEEEeC-CC--
Q 001367 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH-- 600 (1091)
Q Consensus 526 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~-dg-- 600 (1091)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+. ..+. .|++++++|+.... ++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 6788887777665433467899999988754 34455544 3333 78899998887654 43
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC----CeEEEEECCCCC
Q 001367 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 655 (1091)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 655 (1091)
.|++|++.++. ...+..... ..+..+.++++++.++....+ ++++.||+.+++
T Consensus 351 ~l~~~d~~g~~-~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGKR-VREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSCE-EEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCCe-eEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 68899987544 445543321 235566677888877766554 889999987764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-10 Score=122.82 Aligned_cols=272 Identities=10% Similarity=-0.033 Sum_probs=172.0
Q ss_pred eEEEEEcCCC----cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE--------
Q 001367 348 TLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-------- 415 (1091)
Q Consensus 348 ~llasg~~dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-------- 415 (1091)
++.++...++ +|.+.|..+++.+.+.. .+ ..+ .++++|||+++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG-~~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GA-FLS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------EC-TTC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CC-CCC--ceEECCCCCEEEEEccccccccc
Confidence 3555555555 88899999999886522 12 234 799999999999986
Q ss_pred --CCCEEEEEEeeCCcccceeEEEecc-----ccCeeEEEEcCCCCceEEEEee--CCCcEEE--EeCCCCceeEEecCC
Q 001367 416 --SKHIVQLYAYHGGSDARQQLEIDAH-----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGH 484 (1091)
Q Consensus 416 --~d~~i~iwd~~~~~~~~~~~~~~~h-----~~~v~~~~~s~d~~~~~l~s~~--~d~~i~i--wd~~~~~~~~~~~~~ 484 (1091)
.++.|.+||+.+++.+..+. +.+. ......++|+|||++ ++.+. .+..|.+ +|+.+ +.++...
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36789999999988766432 2200 123568999999995 44443 3567888 99877 4444311
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCC-----CCcee----eecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
. . ..+.+.+. ..+++.+.||.+.+.++++ ++... .+.....+. . ++++..++..+. +
T Consensus 166 ~-~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 166 S-C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp S-C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred C-c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 1 1 11223322 3455666788877777765 22111 011112233 3 566666555543 3
Q ss_pred EEEEEecCCce--eeEEEecc-------cccccceEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCeeEEEEe
Q 001367 556 FLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 556 ~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~v~~~~~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~ 617 (1091)
.+.+.|..++. .+..+... .........++++|++++++++.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 48888876532 22222110 000011222689999999887543 2356699999999998887
Q ss_pred CCCCCCCCceEEEccCCCE-EEEEE-CCCeEEEEECCCCCeecccccc
Q 001367 618 AGGGLPENPRICFNKNGTL-LAVIA-NENRIKILETPESNSVDAAGVL 663 (1091)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 663 (1091)
... ....++|+|||++ +++.. .++.|.++|+.+.+.+..+...
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 654 3689999999984 55555 5899999999999888777644
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-05 Score=94.25 Aligned_cols=520 Identities=8% Similarity=-0.024 Sum_probs=270.1
Q ss_pred CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce-eEEecCCCcceEEEeecc
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~ 495 (1091)
...|+..++.+..... . .+.........++|++.+.. ++++-...+.|..+++..... ...+...-.....+++.+
T Consensus 17 ~~~I~~i~~~~~~~~~-~-~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~ 93 (619)
T 3s94_A 17 RRDLRLVDATNGKENA-T-IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 93 (619)
T ss_dssp SSBEEEECCC-----------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred cccEEEEeCCCCcceE-E-EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence 4557777776542101 0 12223445789999987774 444555577899999775532 223333334677888865
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
. ++.+.++-...+.|.+.+++...........-.....+++.|.+..|+..... ....|...++............
T Consensus 94 ~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~~- 169 (619)
T 3s94_A 94 L-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE- 169 (619)
T ss_dssp T-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECSS-
T ss_pred c-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeCC-
Confidence 3 34566667778899999988665544443444456789999986666655321 1356777776543332222222
Q ss_pred ccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 576 LQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
......++++++++.|+.+. ..+.|...|++........... ......+++..+ ...++-...+.|...|..++
T Consensus 170 --~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 170 --IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp --CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred --CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 25678999999877777764 5678999998765443333211 123457777665 34444445688999998877
Q ss_pred Ceecccccccccceeeeec-cccccccccccCCcccCCCC------CCCCCcccccccccccccccccccCCcccceeec
Q 001367 655 NSVDAAGVLSDNLRKLSVN-PISTVTGAGIANGSVSNEDP------KEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 727 (1091)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~g~~~~~~~------s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 727 (1091)
+....+.........+++. +..... +.+.+....... +|..........+|.. +
T Consensus 245 ~~~~~i~~~~~~p~~i~v~~~~~qp~--~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~----l------------- 305 (619)
T 3s94_A 245 EGLREIHSDIFSPMDIHAFSQQRQPN--ATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK----L------------- 305 (619)
T ss_dssp CCCEECCSCCCCCSEEEECCGGGSCC--CCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCC----B-------------
T ss_pred cccEEEecCCCCCcEEEEEccccCCC--ccccccCCCCcccceEECCCCCCCceEeCCchhe----e-------------
Confidence 6555444332223333332 111100 000000000000 0000000000000000 0
Q ss_pred CCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001367 728 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 807 (1091)
Q Consensus 728 ~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 807 (1091)
.. ...++. +....++..+..+.++..++..... . .....+ ..-..+.++
T Consensus 306 ~~----d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~---~~l~~~~~l 354 (619)
T 3s94_A 306 LE----NGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQL---EDIRHAIAI 354 (619)
T ss_dssp CT----TSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCC---SCCSSEEEE
T ss_pred cc----cCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEec---cccCccEEE
Confidence 00 000000 0011222333334455444432111 0 001111 123457789
Q ss_pred EecCCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee-ccc
Q 001367 808 ALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGH 884 (1091)
Q Consensus 808 ~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l-~~h 884 (1091)
++.+.+..|..++ .+.|..+++........+.........+|+...++++..+-+..+.|.+.++.... ...+ ...
T Consensus 355 d~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~ 433 (619)
T 3s94_A 355 DYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISED 433 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTT
T ss_pred EEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECC
Confidence 9998777777766 57899998876443333333345677899986456666666677899999987543 3333 233
Q ss_pred cCCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEE
Q 001367 885 SKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAI 960 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~v 960 (1091)
-....+|++.|...+|..+.. ...|...+++..... ... .+.. .....+++++++..|..+ ..+.|..
T Consensus 434 l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~l~---~~~l---~~P~GlalD~~~~~LY~aD~~~~~I~~ 505 (619)
T 3s94_A 434 LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--VLV---NTSL---GWPNGLALDYDEGKIYWGDAKTDKIEV 505 (619)
T ss_dssp CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEE---CSSC---SCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--EEE---eCCC---CCCeeeEEcccCCEEEEEECCCCEEEE
Confidence 456889999997444444432 356777777653311 111 1111 256789999988877765 4467888
Q ss_pred EEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 961 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 961 wd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
+++.... ...+....-.....++...+ ...++-...+.|...+..+|
T Consensus 506 ~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 506 MNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred EecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 8876433 33332222222334555433 33333334466777777776
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.9e-10 Score=120.70 Aligned_cols=269 Identities=7% Similarity=-0.001 Sum_probs=172.7
Q ss_pred ccEEEEEEecCCCeEEEeec--CceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 734 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 734 ~~i~~~~~s~dg~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
.....++++++|+.+++... ++.++||.+... .. ..|. ... ....++-..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g------~~------~~~p--~~~------~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD------GL------IPFP--PQS------GNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT------EE------EESC--CCC------SSCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC------Ce------ecCC--Ccc------cCcccceeEeeEEEEcC
Confidence 46789999999997777542 343566665311 10 0010 000 00113566889999999
Q ss_pred CCCEEEEEe------CCeEEEEEccCceeEEEecCC------CCCeEEEEEcCCCCcEEEEEe---CCCeEEEEeccCcc
Q 001367 812 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE 876 (1091)
Q Consensus 812 dg~~la~~~------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~la~g~---~dg~i~iwd~~~~~ 876 (1091)
+|+++++.. ++.|.+||+.+++.++.+..+ ...+..++++++++..+++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998766553 378999999999977766432 235689999984455556555 67899999999988
Q ss_pred eeeeeccccCCeE-EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe-
Q 001367 877 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 954 (1091)
Q Consensus 877 ~~~~l~~h~~~V~-~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~- 954 (1091)
....+.+|..... ...++++|..+.+.+.++.++.|.. .+..++|+|||+.|.++.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 7777766533211 1445667878888888888766531 256799999999888753
Q ss_pred c-CeEEEEEcCC---c-----ceeeee-ecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCC
Q 001367 955 E-THLAIYEAEE---L-----TCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1024 (1091)
Q Consensus 955 d-~~i~vwd~~~---~-----~~~~~~-~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 1024 (1091)
. ..+..++... + +....+ ..++......++++++|.++++...++.|.+||..+|+...... .+
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~-- 288 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE-- 288 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence 3 3555555321 1 000000 11233455679999999999998889999999986676432222 11
Q ss_pred CcccccceeEEEeCCCCCCeEEEEecCCcE
Q 001367 1025 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1054 (1091)
Q Consensus 1025 ~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v 1054 (1091)
....+..++++| ++.++++.+..+.+
T Consensus 289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHS 314 (343)
T ss_dssp ---GGSCEEEEEECT-TSCEEEEECCGGGS
T ss_pred ---ceecCCeeEECC-CCcEEEEeCccccc
Confidence 123456788988 47788877755544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=8.3e-09 Score=112.31 Aligned_cols=224 Identities=13% Similarity=0.025 Sum_probs=148.4
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
-..+.+|+|++..+++++..++.|..||..+++... + .....+.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 457889999876788888888999999998875431 1 123579999999999887765
Q ss_pred CCCEEEEEEeeCCcccceeEEEe-cc-ccCeeEEEEcCCCCceEEEEeeC------CCcEEEEeCCCCceeEEecCCCcc
Q 001367 416 SKHIVQLYAYHGGSDARQQLEID-AH-VGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~-~h-~~~v~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
.+ .|.+||..+++... ..... +. ...+.+++++|+|+ ++++... .+.|..++ +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999988875321 11111 11 23588999999998 4444332 24555566 45433 33223344
Q ss_pred eEEEeecccCCceEE-EEEecCCeEEEEecC--CC-Cc-----eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 488 VYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
...++|+ ++++.+ ++.+.++.|.+|+++ ++ .. ...+.........++++++|+..++... .+.|.
T Consensus 181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~ 254 (326)
T 2ghs_A 181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD 254 (326)
T ss_dssp EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence 6677885 466555 445567899999986 43 21 1122223445678999999987776543 34699
Q ss_pred EEecCCceeeEEEecccccccceEEEEEc-CCCCEEEEEeC
Q 001367 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 598 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~s~ 598 (1091)
+||. +++.+..+.... ..+.+++|+ ++++.|++++.
T Consensus 255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEB
T ss_pred EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEec
Confidence 9998 566666666544 578999998 88887766553
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.17 E-value=7.8e-10 Score=120.41 Aligned_cols=186 Identities=9% Similarity=0.048 Sum_probs=133.3
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.+..+++++....+++++.+ .+.+|++............ . +. . .... .+.. |..++| |++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~---~---~~----~-~~~~-----~lp~-V~~l~f--d~~ 98 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDST---P---LT----F-KWEK-----EIPD-VIFVCF--HGD 98 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSC---C---CC----C-SEEE-----ECTT-EEEEEE--ETT
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccc---c---cc----c-eEEe-----eCCC-eeEEEE--CCC
Confidence 67889999999988888887 4555886543210000000 0 00 0 0111 1345 999999 999
Q ss_pred EEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEEC
Q 001367 815 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 894 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 894 (1091)
+|+++.++.|++||+.+.........+...+..+.+.+ . -+++++.||.|.+||+.++.... +...|++++||
T Consensus 99 ~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WS 171 (388)
T 1xip_A 99 QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVT 171 (388)
T ss_dssp EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEEC
T ss_pred EEEEEcCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEc
Confidence 99999889999999987766555666677788888776 3 28889999999999999877643 45689999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecc---C---CCcCCCCCceEEEEcCCCCEEEE
Q 001367 895 DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP---D---GVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 895 pdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~---~---~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
|+| ++.+..||.+++|+.+.++......+..+ . ++. ..|.++.|.+++.++++
T Consensus 172 pkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~---~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 172 NSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE---YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred CCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC---eeEEEEEEecCCeEEEE
Confidence 999 67899999999999988764211222111 1 122 37999999999999998
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-08 Score=110.58 Aligned_cols=225 Identities=10% Similarity=0.010 Sum_probs=146.3
Q ss_pred EEEEEEecCCCeEEEe-ecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 736 ISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 736 i~~~~~s~dg~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
....+|++++..++.. ..++.|..|+..... ..... ....+.+++++++|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-----------------------~~~~~-----~~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGR-----------------------KTVHA-----LPFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-----------------------EEEEE-----CSSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-----------------------EEEEE-----CCCcceEEEEeCCCe
Confidence 4578899986555444 456788888754321 11111 234688999999999
Q ss_pred EEEEEeCCeEEEEEccCceeEEEecC----CCCCeEEEEEcCCCCcEEEEEeC------CCeEEEEeccCcceeeeeccc
Q 001367 815 YLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH 884 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~~la~g~~------dg~i~iwd~~~~~~~~~l~~h 884 (1091)
++++. .+.|.+||..+++....... ....+..++++| +|+++++... .+.|..++ +++.. .+..+
T Consensus 103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~ 177 (326)
T 2ghs_A 103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD 177 (326)
T ss_dssp EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence 88765 55599999988775433221 123578999999 7877665432 24566666 45443 33334
Q ss_pred cCCeEEEEECCCCCEEEEE-eCCCcEEEEEcC--CC-ceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEE
Q 001367 885 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 959 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~-s~Dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~ 959 (1091)
......++|+|||+.|+.+ +.++.|.+|++. ++ .......+....... .....++++++|.+.++. .++.|.
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence 4557889999999876544 457889999986 54 322212222222111 135689999999987775 457899
Q ss_pred EEEcCCcceeeeeecCCccCEEEEEEe-eCCCEEEEEEcC
Q 001367 960 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 998 (1091)
Q Consensus 960 vwd~~~~~~~~~~~~~h~~~v~~v~fs-~dg~~l~t~~~d 998 (1091)
+||. +++.+..+. .+...+++++|+ +|++.|++++..
T Consensus 255 ~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARYE-VPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEEE-CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEEE-CCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998 566665543 345679999999 888877655544
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-08 Score=121.20 Aligned_cols=228 Identities=14% Similarity=0.135 Sum_probs=152.3
Q ss_pred CCeEEEEEccCceeEEEecCCCCC--------------------------------eEEEEEcCCCCcEEEEEeCCC---
Q 001367 821 GGVISLYIVMTFKTILTIMPPSPT--------------------------------ATSLAFNPHDNNVIAIGMDDS--- 865 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~~~~~la~g~~dg--- 865 (1091)
++.|..+|..+|+.+.++...... ...++++| ++.+|++++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 588999999999998776532211 13578888 667777777664
Q ss_pred ----------------eEEEEeccCcceeeeecc--cc-------CCeEEEEECCCC---CEEEEEeCCCcEEEEEcCCC
Q 001367 866 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW 917 (1091)
Q Consensus 866 ----------------~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg---~~las~s~Dg~i~vwd~~~~ 917 (1091)
.|..+|..+|+.+..++. |. ....-+....+| +.++.++.+|.|+++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999998876543 31 122223334477 67899999999999999998
Q ss_pred ceeeeeeeecc--------CCC------------c--C---C--CCCceEEEEcCCCCEEEEE-e---------------
Q 001367 918 GIQTCRSLQTP--------DGV------------M--T---L--APSETHIQFHKDQTRFLLV-H--------------- 954 (1091)
Q Consensus 918 ~~~~~~~~~~~--------~~~------------~--~---~--~~~i~~l~fs~dg~~la~~-~--------------- 954 (1091)
+..-...+... .+. . . . ...-..++|+|++.++.+. .
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 86432221100 000 0 0 0 0001367899998888773 2
Q ss_pred ----------------------------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 955 ----------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 955 ----------------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
.+.|..||+.+++.+.+.. +..++....++.+|.++++++.||.+++||+
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 1679999999999887654 3344556677888889999999999999999
Q ss_pred CCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeE-EEEec----------------CCcEEEEecCC
Q 001367 1007 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF-AVGLT----------------NGEVYVIEPNE 1061 (1091)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l-~~g~~----------------dg~v~~w~~~~ 1061 (1091)
.+|+.+.++.... . +...-+.|.+ +|+++ ++.+. .+.+.+|.+..
T Consensus 506 ~tG~~lw~~~~~~----~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 506 ATGEKLWEAPTGT----G-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp TTCCEEEEEECSS----C-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCceeeeeeCCC----C-----cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 9999998776322 1 1112234545 35544 44322 47899999974
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-08 Score=109.79 Aligned_cols=232 Identities=15% Similarity=0.098 Sum_probs=151.3
Q ss_pred CCCccEEEEEECCCCC-EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 394 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
.........+|+|+|+ ++++...++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+|+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 3445677899999999 5556667789999987 443 22 3445667789999999998 5666556678999997
Q ss_pred CCCceeEEec---CC-CcceEEEeecccCCceEEEE----Eec-------------CCeEEEEecCCCCceeeecCCCCc
Q 001367 473 VTGSRTYSFE---GH-GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLG 531 (1091)
Q Consensus 473 ~~~~~~~~~~---~~-~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~ 531 (1091)
. ++...... +. ...+..+++. ++|.+.++ |.. .+.|..||..+++..... ....
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred C-CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 5 55332221 11 1235667774 46777775 321 245777776555544333 3345
Q ss_pred EEEEEEcCCCCEEEEEecCC--CCceEEEEEecCCceee--EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 532 CTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 532 i~~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
...++|+||++.|+.+.... .+...|++|++..+... ..+... .......+++.++|+ +.++..+ .|.+|+.
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS 265 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence 67899999999887765421 01257999998765421 111111 123456788999998 4444444 5999998
Q ss_pred CCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCe
Q 001367 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1091)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1091)
.++.+..+..+. .+..++|+++++.|++++.++.
T Consensus 266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 577777776554 3788999999999998887643
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-08 Score=121.25 Aligned_cols=331 Identities=10% Similarity=0.051 Sum_probs=189.9
Q ss_pred EEEEEecCCeEEEEecCCCCceeeecCCCCc-----------EEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE
Q 001367 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLG-----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
.++.++.++.|.-+|..+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+.+-
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEVW 152 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEEe
Confidence 5666777788888888888877766544221 112222 4556776654 6679999999999988
Q ss_pred EEecc-ccc-ccceEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCeeEEEEeCCCCC------------------
Q 001367 570 TYQGL-QLQ-HNSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAGGGL------------------ 622 (1091)
Q Consensus 570 ~~~~~-~~~-~~~v~~-v~~~~~~~~l~~~s~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 622 (1091)
.+... ... ...+.+ ... .+..+++++. ++.|+.||..+|+.+-.+......
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred eecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 87754 100 011111 111 2455666543 799999999999999887653221
Q ss_pred ------------CCCceEEEccCCCEEEEEECCC-------------------eEEEEECCCCCeecccccccccceeee
Q 001367 623 ------------PENPRICFNKNGTLLAVIANEN-------------------RIKILETPESNSVDAAGVLSDNLRKLS 671 (1091)
Q Consensus 623 ------------~~v~~v~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~v~~~~ 671 (1091)
.....++++|++.++++++.++ .|..+|..+++....+.....
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~------ 304 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG------ 304 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT------
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC------
Confidence 0113578888888888887764 355555555544433221100
Q ss_pred eccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCC---CeE
Q 001367 672 VNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG---QAI 748 (1091)
Q Consensus 672 ~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg---~~l 748 (1091)
..|+... .....-+....+| ..+
T Consensus 305 --------------------------------------d~wd~~~----------------~~~p~l~~~~~dG~~~~~l 330 (677)
T 1kb0_A 305 --------------------------------------DNWDYTS----------------TQPMILADIKIAGKPRKVI 330 (677)
T ss_dssp --------------------------------------CCSCCCC----------------CSCCEEEEEEETTEEEEEE
T ss_pred --------------------------------------ccccccc----------------CCCcEEEecccCCcEeeEE
Confidence 0121110 0111112233466 567
Q ss_pred EEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceee----------ecCCCCCCCCCeeEEEecCCCCEEEE
Q 001367 749 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV----------NDTTDSNSQEAVPCFALSKNDAYLFS 818 (1091)
Q Consensus 749 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~l~~s~dg~~la~ 818 (1091)
+.++.+|.+.++|..+.+...........-..-+| .++..... ...+...-...-..++++|++.++++
T Consensus 331 ~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv 409 (677)
T 1kb0_A 331 LHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYL 409 (677)
T ss_dssp EECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEE
T ss_pred EEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEE
Confidence 77778888888887655432111100000000011 12221110 00110000111236788998888776
Q ss_pred EeC--------------------------------------------CeEEEEEccCceeEEEecCCCCCeEEEEEcCCC
Q 001367 819 ASG--------------------------------------------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 854 (1091)
Q Consensus 819 ~~d--------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 854 (1091)
... |.|..||+.+++.+.++... ..+....++. +
T Consensus 410 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~-~ 487 (677)
T 1kb0_A 410 PAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTT-A 487 (677)
T ss_dssp EEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEE-T
T ss_pred eChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEe-C
Confidence 431 67999999999998877632 3334445555 5
Q ss_pred CcEEEEEeCCCeEEEEeccCcceeeeecccc-CCeEEEEECCCCCEEEE
Q 001367 855 NNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVS 902 (1091)
Q Consensus 855 ~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~las 902 (1091)
+.++++++.||.+++||..+|+.+..+.... ....-+.++++|+.++.
T Consensus 488 g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 488 GNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 6678889999999999999999998886433 23344667788875544
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.6e-08 Score=110.07 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=98.8
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCC---------cceE-EEeecccCCceEEEEEecCCeEEEEecCCCCceeeec
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1091)
.++.++.++.|..+|..+|+.+..+.... ..+. .... ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 57778888999999999999987765421 2222 2222 23478888899999999999988877655
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccc--cceEEEEEcCCCCEEEEEeCCCeEEE
Q 001367 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI 604 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~s~dg~i~i 604 (1091)
............ +..+++++. ++.|+.+|..+|+.+..+....... ......... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 443221112221 345555543 5679999999998877766533000 000111222 457888888999999
Q ss_pred EECCCCeeEEEEeCC
Q 001367 605 WDMNKVQLLTTIDAG 619 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~ 619 (1091)
+|..+|+.+......
T Consensus 203 ~d~~tG~~~w~~~~~ 217 (376)
T 3q7m_A 203 VLMEQGQMIWQQRIS 217 (376)
T ss_dssp EETTTCCEEEEEECC
T ss_pred EECCCCcEEEEEecc
Confidence 999999988776543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-08 Score=118.80 Aligned_cols=326 Identities=10% Similarity=0.071 Sum_probs=187.5
Q ss_pred eEEEEEecCCeEEEEecCCCCceeeecCCCCc----------E-EEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG----------C-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
..++.++.++.|.-+|..+++.+..+...... + ..+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~----dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL----DGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc----CCEEEEEECCCCCEe
Confidence 36777777888999999888888776543221 0 11122 3556666654 667999999999988
Q ss_pred EEEecc-cccccceEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCeeEEEEeCCCCC-----------------
Q 001367 569 RTYQGL-QLQHNSVSVVHFDT--AKDQILAAG------DDHVIKIWDMNKVQLLTTIDAGGGL----------------- 622 (1091)
Q Consensus 569 ~~~~~~-~~~~~~v~~v~~~~--~~~~l~~~s------~dg~i~iwd~~~~~~~~~~~~~~~~----------------- 622 (1091)
-.+... . ......+..+| .+..+++++ .+|.|+.||..+|+.+-.+......
T Consensus 145 W~~~~~~~--~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 145 WSVDTRAD--HKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEECCSC--TTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eeecCcCC--CCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 777653 1 00000111111 134455543 3789999999999998777531100
Q ss_pred ------------CCCceEEEccCCCEEEEEECCCe-------------------EEEEECCCCCeecccccccccceeee
Q 001367 623 ------------PENPRICFNKNGTLLAVIANENR-------------------IKILETPESNSVDAAGVLSDNLRKLS 671 (1091)
Q Consensus 623 ------------~~v~~v~~s~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~v~~~~ 671 (1091)
.....++++|+..++++++.++. |..+|..+++....+.....
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~------ 296 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG------ 296 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT------
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc------
Confidence 01135788998889999888764 66666666655443332110
Q ss_pred eccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCC---eE
Q 001367 672 VNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ---AI 748 (1091)
Q Consensus 672 ~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~---~l 748 (1091)
..|+.. ....+.-.....+|+ .+
T Consensus 297 --------------------------------------d~wd~~----------------~~~~~~l~d~~~~G~~~~~v 322 (689)
T 1yiq_A 297 --------------------------------------DAWDYT----------------ATQHMILAELPIDGKPRKVL 322 (689)
T ss_dssp --------------------------------------CCSCCC----------------CCSCEEEEEEEETTEEEEEE
T ss_pred --------------------------------------cccccc----------------CCCCcEEEeeccCCcEEEEE
Confidence 011111 001111111222444 56
Q ss_pred EEeecCceEEEeecCCcccccccceeeccCCcccc----C---------------CCCCceeeecCCCCCCCCCeeEEEe
Q 001367 749 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ----P---------------RHGPQFMVNDTTDSNSQEAVPCFAL 809 (1091)
Q Consensus 749 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~~~~~~~~~~~v~~l~~ 809 (1091)
+.++.+|.++++|..+.+........ ...|. . .++..... .+...-...-..+++
T Consensus 323 ~~~~~~G~l~~lD~~tG~~l~~~~~~----~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~--~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 323 MQAPKNGFFYVIDRATGELLSAKGIV----PQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV--TPAFWGAHDWQPMSY 396 (689)
T ss_dssp EECCTTSEEEEEETTTCCEEEEEESS----CCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE--SSCTTCSSCSSCCEE
T ss_pred EEECCCCeEEEEECCCCCEecccccc----ccccccccCccCCCcccchhhccccCCCCeeEe--CCCcccccCCCcceE
Confidence 77777888888887655432110000 00010 0 01110111 110001112234788
Q ss_pred cCCCCEEEEEe----------------------------------------------CCeEEEEEccCceeEEEecCCCC
Q 001367 810 SKNDAYLFSAS----------------------------------------------GGVISLYIVMTFKTILTIMPPSP 843 (1091)
Q Consensus 810 s~dg~~la~~~----------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~ 843 (1091)
+|+..++++.. +|.|..||+.+++.+.++..+..
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~ 476 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI 476 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC
Confidence 88887777642 26799999999999888764432
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCC-eEEEEECCCCCEEE
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILV 901 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~la 901 (1091)
...-.++. .+.++++|+.||.++.||..+|+.+.++....+. ..-+.|+.||+..+
T Consensus 477 -~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 477 -FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp -CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred -ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 22234455 5568888999999999999999999888654332 24467778887544
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.1e-09 Score=113.47 Aligned_cols=301 Identities=11% Similarity=0.053 Sum_probs=173.7
Q ss_pred EEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee
Q 001367 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1091)
Q Consensus 446 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1091)
++....++. +..++.++.|..|| .+++.+..+......+.++.. ..++. +..++.+ +..+|. +++.....
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g~-l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDGT-IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTTE-ECCSSCE--EEEECC-CGGGGGGS
T ss_pred CceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCCc-EEEecCc--EEEECC-CCcEEEEE
Confidence 445556665 66677888999999 888887666544444555555 33443 4455544 777875 44443333
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001367 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1091)
Q Consensus 526 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iw 605 (1091)
...........+. +..+.+++. ++.+..+|.. ++......... ..+.++...+++. ++.++.++.|..+
T Consensus 94 ~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~~ 162 (330)
T 3hxj_A 94 DTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYAI 162 (330)
T ss_dssp CC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred ECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence 3222222223333 444555543 4569999988 76665555433 3455566666665 6677788999999
Q ss_pred ECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccC
Q 001367 606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1091)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 685 (1091)
|.. ++.......... .+.++...+++.+.+ ++ +.+..+| .++........
T Consensus 163 d~~-g~~~~~~~~~~~--~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~----------------------- 212 (330)
T 3hxj_A 163 NPD-GTEKWRFKTNDA--ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA----------------------- 212 (330)
T ss_dssp CTT-SCEEEEEECSSC--CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC-----------------------
T ss_pred CCC-CCEeEEEecCCC--ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc-----------------------
Confidence 998 777766654432 456666666666433 33 5666666 33322111100
Q ss_pred CcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCc
Q 001367 686 GSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 765 (1091)
Q Consensus 686 g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~ 765 (1091)
T Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T 3hxj_A 213 -------------------------------------------------------------------------------- 212 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCe
Q 001367 766 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTA 845 (1091)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i 845 (1091)
....+.++++.++|.+.+...++.+..+|. +++.+..+......+
T Consensus 213 ----------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~ 257 (330)
T 3hxj_A 213 ----------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIE 257 (330)
T ss_dssp ----------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCC
T ss_pred ----------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCcc
Confidence 011223333444444444333455555542 334444433333334
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001367 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 846 ~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
..+.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|++.+ ++.+|.+++...+.
T Consensus 258 ~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 258 SSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLE 324 (330)
T ss_dssp SCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC--
T ss_pred ccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEeccc
Confidence 4455655 45 4566888889999996 6777666655556677888888887555 88899998887665
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.07 E-value=8.9e-08 Score=106.83 Aligned_cols=277 Identities=10% Similarity=0.037 Sum_probs=170.2
Q ss_pred EEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCc
Q 001367 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 429 (1091)
Q Consensus 350 lasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 429 (1091)
+.+++.++.|..+|..+|+.+-..... ... .. .......+.+ ....++..+.+++.++.|..+|..+|+
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~-------~~~-~~--~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLA-------EKD-GW--FSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECC-------C----C--CSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCc-------ccc-cc--ccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 466677899999999999876432210 000 00 0000122222 122246678888899999999999987
Q ss_pred ccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce-----EEEeecccCCceEEEE
Q 001367 430 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----YSLCPHAKENIHFIFS 504 (1091)
Q Consensus 430 ~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~s 504 (1091)
.+. ............... ++ .++.++.++.|..+|..+|+.+..+....... ..... .+..++.
T Consensus 125 ~~W---~~~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~ 193 (376)
T 3q7m_A 125 VAW---QTKVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVV 193 (376)
T ss_dssp EEE---EEECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEE
T ss_pred EEE---EEeCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEE
Confidence 543 222222111122222 33 47778889999999999999988775432211 11122 1236778
Q ss_pred EecCCeEEEEecCCCCceeeecCCCCc----EEE---EEEcC--CCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 505 ISVDGKIKAWLYDSLGARVDYDAPGLG----CTR---MAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 505 ~~~dg~i~iwd~~~~~~~~~~~~~~~~----i~~---~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
++.++.+..+|..+++........... +.. +...| .+..++.++. ++.+..+|..+++.+.....
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~-- 267 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY----NGNLTALDLRSGQIMWKREL-- 267 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT----TSCEEEEETTTCCEEEEECC--
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec----CcEEEEEECCCCcEEeeccC--
Confidence 888999999999988877655432110 000 00111 2455555543 45699999999987765543
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
.....+.. ++..+++++.++.+..+|..+++.+........ ........ .+..+++++.+|.++++|..+++
T Consensus 268 ---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 268 ---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp ---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred ---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 22333333 467888999999999999999998877652211 11222233 25678899999999999999998
Q ss_pred eeccccc
Q 001367 656 SVDAAGV 662 (1091)
Q Consensus 656 ~~~~~~~ 662 (1091)
.+.....
T Consensus 340 ~~~~~~~ 346 (376)
T 3q7m_A 340 FVAQQKV 346 (376)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7665543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-08 Score=108.23 Aligned_cols=239 Identities=13% Similarity=0.094 Sum_probs=152.9
Q ss_pred EEc--CCCceEEEEEcCCCcEEEEEcCCCCc--eeeeceeEEeccccccceeeeeecC-CCccEEEEEECCCCCEEEEEE
Q 001367 341 DFH--PVQHTLLLVGTNVGDTGLWDVNSGQK--LFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 341 ~fs--pdg~~llasg~~dg~i~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~las~~ 415 (1091)
.++ +++++|++.|..+++|.|.|+.+... .....+ + ...+... .......+..+||| .++++.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i---e--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~ 155 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI---E--------PEEVKKVSGYSRLHTVHCGPDA-IYISAL 155 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE---C--------HHHHHHHHCEEEEEEEEECSSC-EEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeee---c--------hhhcccccCCCcccceeECCCe-EEEEcC
Confidence 347 89999999999999999999975421 111000 0 0000000 11245668889999 666665
Q ss_pred CC------CEEEEEEeeCCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEee-------------------CCCcEEE
Q 001367 416 SK------HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG-------------------DDKTIKV 469 (1091)
Q Consensus 416 ~d------~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~-------------------~d~~i~i 469 (1091)
.+ +.|.+.|..+++.+.... ..... .--..+.|+|+++ .+++.. .+.+|.+
T Consensus 156 g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 156 GNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 54 789999999987665321 11222 2234588899999 677774 3689999
Q ss_pred EeCCCCceeEEecCC--CcceEEEeecccCCceEEEEEe------cCCeEEEEecCCCCce--ee--ecC-------C--
Q 001367 470 WDAVTGSRTYSFEGH--GAPVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGAR--VD--YDA-------P-- 528 (1091)
Q Consensus 470 wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~--~~--~~~-------~-- 528 (1091)
||+.+++.+.++... ......+.|..++++.+++.++ .+++|.+|..+.+... .. +.. .
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 999999888887642 1334556665577777777666 5668877766542110 01 111 0
Q ss_pred -------CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC---ceeeEEEeccc-----------ccccceEEEEEc
Q 001367 529 -------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQ-----------LQHNSVSVVHFD 587 (1091)
Q Consensus 529 -------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~-----------~~~~~v~~v~~~ 587 (1091)
......+.+|+||++|.++.. +.+.|.++|+.. .+.+..+.... .-......++++
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 234678899999999998765 356799999863 34444443320 000135788999
Q ss_pred CCCCEEEEEe
Q 001367 588 TAKDQILAAG 597 (1091)
Q Consensus 588 ~~~~~l~~~s 597 (1091)
|||++++++.
T Consensus 390 pDGk~LyVaN 399 (462)
T 2ece_A 390 RDGRRVYVTN 399 (462)
T ss_dssp TTSSEEEEEC
T ss_pred CCCCEEEEEc
Confidence 9999999986
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-07 Score=102.88 Aligned_cols=232 Identities=14% Similarity=0.109 Sum_probs=149.9
Q ss_pred Eec--CCCCEEEEEe--CCeEEEEEccCc----eeEEEec-------CCCCCeEEEEEcCCCCcEEEEEeCC------Ce
Q 001367 808 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDD------ST 866 (1091)
Q Consensus 808 ~~s--~dg~~la~~~--dg~i~iwd~~~~----~~~~~~~-------~~~~~i~~l~~s~~~~~~la~g~~d------g~ 866 (1091)
.++ +++++|++.+ ++.|.++|+.+. +..+++. ........+.++| +| +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 346 8899999887 688999999765 6666663 1112456788899 77 66666555 78
Q ss_pred EEEEeccCcceeeeeccccC---CeEEEEECCCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeee
Q 001367 867 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS 924 (1091)
Q Consensus 867 i~iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~las~s-------------------~Dg~i~vwd~~~~~~~~~~~ 924 (1091)
|.++|..+++.+.++....+ --+.+.|+|+++.+++.. .+.+|.+||+.+++... .
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 99999999999988863222 234588899999998875 36889999999864332 2
Q ss_pred eeccCCCcCCCCCceEEEE--cCCCCEEEEE-------ecCeEEEEEcCCcceee--ee-ecCC----------------
Q 001367 925 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLK--QW-FPIS---------------- 976 (1091)
Q Consensus 925 ~~~~~~~~~~~~~i~~l~f--s~dg~~la~~-------~d~~i~vwd~~~~~~~~--~~-~~~h---------------- 976 (1091)
+....... ....+.| +|+|+++.++ -+++|.+|....++... .+ ....
T Consensus 244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 22211111 2345555 9999988873 34577776654432111 00 0000
Q ss_pred ccCEEEEEEeeCCCEEEEEEc-CCcEEEEeCCC---CceEEEeeccccc-----CCCCcccccceeEEEeCCCCCCeEEE
Q 001367 977 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYL-----RPTTSCLHVYPHAIAAHPLKPTQFAV 1047 (1091)
Q Consensus 977 ~~~v~~v~fs~dg~~l~t~~~-dg~v~iwd~~~---~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~p~d~~~l~~ 1047 (1091)
......|.+|+||++|.++.. .+.|.++|+.. .+++..+...... +.+ ......+..+.++| ||++|.+
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G-~~~~ggPr~~~lSp-DGk~LyV 397 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG-HKLTGAPQMLEISR-DGRRVYV 397 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS-CCCCSCCCCEEECT-TSSEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc-ccCCCCCCEEEEcC-CCCEEEE
Confidence 134678999999999887765 57899999863 3445444422110 000 00012466789999 5888888
Q ss_pred Ee
Q 001367 1048 GL 1049 (1091)
Q Consensus 1048 g~ 1049 (1091)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 88
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-08 Score=119.48 Aligned_cols=291 Identities=12% Similarity=0.060 Sum_probs=178.3
Q ss_pred EEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC-ccE-EEEEECCCCCEEEEEECCCEEEEEEeeC
Q 001367 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1091)
Q Consensus 350 lasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1091)
+++++.++.|.-+|..+|+.+-..... .... ...... ..+ ..++. ++..|++++.|+.|..+|..+
T Consensus 73 vyv~~~~~~v~AlD~~tG~~~W~~~~~-------~~~~---~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDGRLIWKYDPQ-------SDRH---RAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp EEEECGGGCEEEEETTTCCEEEEECCC-------CCGG---GGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEcCCCeEEEEECCCCceeEEEcCC-------CCcc---ccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC
Confidence 456677899999999999976432110 0000 000000 000 01122 466888888999999999999
Q ss_pred CcccceeEEEeccccCeeEEEEcC---CCCceEEEEee-----CCCcEEEEeCCCCceeEEecCCC-c------------
Q 001367 428 GSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHG-A------------ 486 (1091)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~~~~s~---d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~-~------------ 486 (1091)
|+.+-.... ..+......+..+| ++. +++..+ .++.|+.||..+|+.+..+.... .
T Consensus 141 G~~~W~~~~-~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 141 GQRAWSVDT-RADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp CCEEEEEEC-CSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CCEeeeecC-cCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 986543211 10111111111122 454 333322 37899999999999988774210 0
Q ss_pred -----------------ce-EEEeecccCCceEEEEEecCCe-------------------EEEEecCCCCceeeecCCC
Q 001367 487 -----------------PV-YSLCPHAKENIHFIFSISVDGK-------------------IKAWLYDSLGARVDYDAPG 529 (1091)
Q Consensus 487 -----------------~v-~~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~ 529 (1091)
.+ ..+++. ++..+++.++.++. |..+|.++++.+..+....
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~d--~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~ 295 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAYD--PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP 295 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEEE--TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccCCceeeecCCCCccccceeEc--CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence 00 133443 34457888877764 9999999999887665421
Q ss_pred C---------cEEEEEEcCCCC---EEEEEecCCCCceEEEEEecCCceeeEEEecccc---------------------
Q 001367 530 L---------GCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--------------------- 576 (1091)
Q Consensus 530 ~---------~i~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 576 (1091)
. +........+|+ .++.+. .++.++++|..+|+.+........
T Consensus 296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 296 GDAWDYTATQHMILAELPIDGKPRKVLMQAP----KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred cccccccCCCCcEEEeeccCCcEEEEEEEEC----CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1 121122223554 455543 377899999999998744321110
Q ss_pred ----c-----------ccceEEEEEcCCCCEEEEEeC-------------------------------------------
Q 001367 577 ----Q-----------HNSVSVVHFDTAKDQILAAGD------------------------------------------- 598 (1091)
Q Consensus 577 ----~-----------~~~v~~v~~~~~~~~l~~~s~------------------------------------------- 598 (1091)
. ......++++|+...+++...
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 0 001123688898888877532
Q ss_pred --CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccccc
Q 001367 599 --DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS 664 (1091)
Q Consensus 599 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 664 (1091)
+|.|+.||+.+|+.+-....+.. ...-.+...+.++++++.||.++.||..+++.+..+....
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence 37899999999999988876543 2334666678899999999999999999999988776543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-08 Score=112.98 Aligned_cols=273 Identities=11% Similarity=0.032 Sum_probs=171.3
Q ss_pred CCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEE-c-CCCCEEEEEe------------------C
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG------------------D 598 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~-~-~~~~~l~~~s------------------~ 598 (1091)
+||++++.+.. .+..|.+.|+.+.+..+.+.-.. ...+..+++ + |+++++++++ .
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence 48999988654 36679999999999888664322 245788887 5 9999999985 2
Q ss_pred CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccc
Q 001367 599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1091)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1091)
++.+.+.|.++.+...++...+. -..++++|+|+++++.+.+..- +..+..... .
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~~~--~------------- 228 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEMTA--A------------- 228 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHHTC--C-------------
T ss_pred CceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhccc--c-------------
Confidence 45799999999999988876543 3678899999999998875321 100000000 0
Q ss_pred ccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEE
Q 001367 679 TGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 758 (1091)
Q Consensus 679 ~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~ 758 (1091)
.-..+.+.+..... .+.++|+.... +.+.
T Consensus 229 --------------------------~~d~v~V~~~~~~~---------------------~~v~~Gk~~~i----~~V~ 257 (595)
T 1fwx_A 229 --------------------------EMDHIVVFNIAEIE---------------------KAIAAGDYQEL----NGVK 257 (595)
T ss_dssp --------------------------SEEEEEEEEHHHHH---------------------HHHHHTCSEEE----TTEE
T ss_pred --------------------------ccceEEEeecccee---------------------EeccCCCeeEE----CcEE
Confidence 00111111111000 01122322221 2355
Q ss_pred EeecCCcccccccceeeccCCccccCCCCCc-eeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCce--
Q 001367 759 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-- 833 (1091)
Q Consensus 759 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~-- 833 (1091)
|.|....+ +.. +.... -.....++.++|||+++++++ +++|.++|+.+.+
T Consensus 258 VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~ 312 (595)
T 1fwx_A 258 VVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV 312 (595)
T ss_dssp EEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred EEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc
Confidence 55543210 111 11111 122456789999999999987 5889999999763
Q ss_pred ----------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC----------cceeeeeccccCCe-----
Q 001367 834 ----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------SEVISKLEGHSKRV----- 888 (1091)
Q Consensus 834 ----------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~----------~~~~~~l~~h~~~V----- 888 (1091)
...++. .......++|+| +|...++...|+.|.+||+.+ .+.+..+..|-.+-
T Consensus 313 ~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~ 390 (595)
T 1fwx_A 313 FYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTV 390 (595)
T ss_dssp HHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEET
T ss_pred cccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceec
Confidence 233332 345678999999 776666777899999999987 44566665554321
Q ss_pred EEEEECCCCCEEEEEeC---CCc----------EEEEEcCCCce
Q 001367 889 TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGI 919 (1091)
Q Consensus 889 ~~l~~spdg~~las~s~---Dg~----------i~vwd~~~~~~ 919 (1091)
.++.++|||++|+++.. |+. -.++|+++++.
T Consensus 391 ~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 391 MGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp TTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred cceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 23456899999998753 543 27899976553
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-08 Score=111.75 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=172.1
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 417 (1091)
....+..+|. + ..|+.++.|..|| .+|+.+.. ...+...+.++...++|.+.+ ++.+
T Consensus 23 ~~~~~d~~g~-l-~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~ 79 (330)
T 3hxj_A 23 SSPILAKNGT-I-YLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK 79 (330)
T ss_dssp CCCEECTTSC-E-ECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE
T ss_pred cCceEccCCe-E-EEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc
Confidence 3455666776 4 6677788999999 88876532 111334567777877776444 4333
Q ss_pred CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccC
Q 001367 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1091)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1091)
|..+|. +++.+... ...........+. ++ .+..++.++.|..+|.. ++.......+...+.++.. .+
T Consensus 80 --l~~~d~-~g~~~~~~---~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~ 146 (330)
T 3hxj_A 80 --VYAINP-DGTEKWRF---DTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE 146 (330)
T ss_dssp --EEEECC-CGGGGGGS---CC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred --EEEECC-CCcEEEEE---ECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence 888886 55443321 1122222333333 44 46778888999999988 8877776655555555555 33
Q ss_pred CceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccccc
Q 001367 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1091)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1091)
++ .++.++.++.|..+|.. ++...........+.++.+.+++...+.. +.+..+| .+++....+....
T Consensus 147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~-- 214 (330)
T 3hxj_A 147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY-- 214 (330)
T ss_dssp TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence 44 46678888999999988 66666665555567777787888765543 2289999 6776665555433
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCee
Q 001367 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 578 ~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
..+.++...+++ .+.+++.++.+..+|. +++.+..+..... .+..+.+.+++ .|.+++.+|.+..+|. +++.+
T Consensus 215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 557777888776 4666777888888874 5666666554433 23455666555 5777888889999985 55555
Q ss_pred cccc
Q 001367 658 DAAG 661 (1091)
Q Consensus 658 ~~~~ 661 (1091)
....
T Consensus 288 ~~~~ 291 (330)
T 3hxj_A 288 WNFE 291 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=0.00012 Score=86.08 Aligned_cols=477 Identities=9% Similarity=-0.036 Sum_probs=240.3
Q ss_pred CCcEEEEeCCCCc-eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-eeeecCCCCcEEEEEEcCCC
Q 001367 464 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG 541 (1091)
Q Consensus 464 d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~ 541 (1091)
...|+..|+.... ........-.....+++++. ++.++++-...+.|..++++.... ...+...-.....+++.+.+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~-~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeC-CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 4568888877543 11122223334667777654 345555666678898888876532 23333333567899999977
Q ss_pred CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeEEEEeCC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~~~~~ 619 (1091)
..|+.+.. ..+.|.+.++............ ......+++.|.+..|+.+.. .+.|...+++...........
T Consensus 96 ~~ly~~d~---~~~~I~v~~~dG~~~~~l~~~~---l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 96 EKLYWTDS---ETNRIEVSNLDGSLRKVLFWQE---LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp TEEEEEET---TTTEEEEEETTSCSCEEEECSS---CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred CEEEEEeC---CCCEEEEEECCCCCEEEEEeCC---CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence 77776643 3567999998755433233222 245778999998777776653 467777787654433333222
Q ss_pred CCCCCCceEEEccCCCEEEEEEC-CCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCC
Q 001367 620 GGLPENPRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVK 698 (1091)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~ 698 (1091)
....+.++++++++.|+.+.. .+.|..+++..........+.......+++. .+ .
T Consensus 170 --~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~---------------------~~-~ 225 (619)
T 3s94_A 170 --IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF---------------------ED-I 225 (619)
T ss_dssp --CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEES---------------------SS-E
T ss_pred --CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEe---------------------CC-E
Confidence 234688999997776666654 5778888886543222222111111222221 11 2
Q ss_pred cccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccccccccee---e
Q 001367 699 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT---T 775 (1091)
Q Consensus 699 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~ 775 (1091)
..++-...+.|...+...+... ..+. .. ......+ .++.-............ .
T Consensus 226 ly~td~~~~~V~~~d~~tg~~~--~~i~-~~---~~~p~~i------------------~v~~~~~qp~~~n~C~~~ng~ 281 (619)
T 3s94_A 226 LYWTDWSTHSILACNKYTGEGL--REIH-SD---IFSPMDI------------------HAFSQQRQPNATNPCGIDNGG 281 (619)
T ss_dssp EEEECTTTCSEEEEESSSCCCC--EECC-SC---CCCCSEE------------------EECCGGGSCCCCCTTTTTGGG
T ss_pred EEEecCCCCEEEEEECCCCccc--EEEe-cC---CCCCcEE------------------EEEccccCCCccccccCCCCc
Confidence 2222222333333332211110 0000 00 0000111 11110000000000000 0
Q ss_pred ccCCccccCCCC--C--ceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEE-Eec-CCCCCeEEEE
Q 001367 776 KVPPRLYQPRHG--P--QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIM-PPSPTATSLA 849 (1091)
Q Consensus 776 ~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~-~~~-~~~~~i~~l~ 849 (1091)
...+.+-.+..+ . |..-..+ .....+|. .....+|+.+..+.|+..++....... .+. ..-..+.+++
T Consensus 282 Cs~lCl~~~~~~~~~C~C~~g~~l----~~d~~~C~--~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld 355 (619)
T 3s94_A 282 CSHLCLMSPVKPFYQCACPTGVKL----LENGKTCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAID 355 (619)
T ss_dssp CSSEEEECSSTTSEEEECCTTCCB----CTTSSCBC--SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEE
T ss_pred ccceEECCCCCCCceEeCCchhee----cccCcccC--CCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEE
Confidence 000000000000 0 0000000 00111111 112346677777788888887654221 121 1234678999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecc
Q 001367 850 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP 928 (1091)
Q Consensus 850 ~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd-g~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~ 928 (1091)
|.+.++.++++-...+.|+.+++........+.........+++.+. +++.++-+..+.|.+.++++... ..+.
T Consensus 356 ~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~---~~l~-- 430 (619)
T 3s94_A 356 YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR---KILI-- 430 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEE--
T ss_pred EEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE---EEEE--
Confidence 99855555555556789999998764433333333456778999864 44555556678899999986432 1111
Q ss_pred CCCcCCCCCceEEEEcCCCCEEEEEe---cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEc-CCcEEEE
Q 001367 929 DGVMTLAPSETHIQFHKDQTRFLLVH---ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIH 1004 (1091)
Q Consensus 929 ~~~~~~~~~i~~l~fs~dg~~la~~~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~-dg~v~iw 1004 (1091)
.... .....+++.|...+|..+. ...|...++. |.....+....-.....+++++++..|..+.. .+.|...
T Consensus 431 ~~~l---~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~ 506 (619)
T 3s94_A 431 SEDL---EEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM 506 (619)
T ss_dssp CTTC---CSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ECCC---CCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEE
Confidence 1111 2478999999755555432 3567777765 33333333333557789999997777766654 4678888
Q ss_pred eCCCCc
Q 001367 1005 EASNLE 1010 (1091)
Q Consensus 1005 d~~~~~ 1010 (1091)
++....
T Consensus 507 ~~dG~~ 512 (619)
T 3s94_A 507 NTDGTG 512 (619)
T ss_dssp ESSSCC
T ss_pred ecCCCc
Confidence 886544
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=121.01 Aligned_cols=191 Identities=8% Similarity=-0.023 Sum_probs=112.6
Q ss_pred CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
++..+++++.|+.|+.||..+|+.+. .+.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 67899999999999999999997654 3333 4565666667777 677778999999999999998887765432
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
.......... ++..+++++.++.++.||..+++.+..+..+. ...++|++..+++++. ++.|+.||..+|+
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTRE 151 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSSS
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCCC
Confidence 1111111001 33478888999999999999988877665443 2345678888888765 6779999999998
Q ss_pred eeEEEecccccccceEEEEEcCCC---CEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
.+..+.... .....+.++. ..+++++.+|.|+.||..+|+.+.....
T Consensus 152 ~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 152 LRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp CCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred EEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 766654322 1222333332 5678889999999999999998877764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.91 E-value=0.00065 Score=85.36 Aligned_cols=604 Identities=8% Similarity=0.012 Sum_probs=304.6
Q ss_pred eeeecccCCCCcEEEEEcCC----CceEEEEEc--CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccE
Q 001367 326 VAQTLIEGSSSPMSMDFHPV----QHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspd----g~~llasg~--~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1091)
++.++..- ++|..++.-.. ...++++++ .+|++++..-.=+-.... .+ + +. .-..+
T Consensus 367 ~~~~~~N~-~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~-~~---~------------l~-gv~~i 428 (1158)
T 3ei3_A 367 AMETFTNL-GPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHA-SI---D------------LP-GIKGL 428 (1158)
T ss_dssp EEEEECCC-CSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEE-EE---C------------CC-SCCEE
T ss_pred eEeeecCc-CCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEE-ee---c------------CC-CccEE
Confidence 44455544 38888777432 123555444 367787765321111110 00 0 22 22456
Q ss_pred EEEEEC---CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEE--cCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 400 NRVVWS---PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 400 ~~l~~s---pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
+.+... ....||+.+..+.+ .|+.+... .+... ...+-......++. ..++ .++=.. ...|++.+...
T Consensus 429 Wtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev-~~~gf~~~~~TL~~~~l~~~---~ivQVt-~~~Irli~~~~ 501 (1158)
T 3ei3_A 429 WPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET-ELMGFVDDQQTFFCGNVAHQ---QLIQIT-SASVRLVSQEP 501 (1158)
T ss_dssp EEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE-CCTTCCSSSCEEEEEEETTT---EEEEEE-SSCEEEEESSS
T ss_pred EEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc-ccccccCCCCcEEEEEcCCC---eEEEEe-cCEEEEEECCC
Confidence 666543 24678888877766 56666432 22211 11111111111111 1222 233333 23477777666
Q ss_pred CceeEEecCCC-cceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcCC------CCEEEE
Q 001367 475 GSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN------GRRLFS 546 (1091)
Q Consensus 475 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d------~~~l~~ 546 (1091)
+..+..+.... ..|...+.. + ..++.++ ++.+.++.++.+.... ....-...|.|+++.|. ++++++
T Consensus 502 ~~~~~~w~~p~~~~I~~As~n---~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aV 576 (1158)
T 3ei3_A 502 KALVSEWKEPQAKNISVASCN---S-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAI 576 (1158)
T ss_dssp CCEEEEECCTTCCCCCEEEEC---S-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEE
T ss_pred CeEEEEEECCCCCEEEEEEeC---C-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEE
Confidence 66666665433 356665542 2 3555554 6788888776532111 11122457999998763 367777
Q ss_pred EecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEc--CCCCEEEEEeCCCeEEEEEC--CCCeeEEE--EeCCC
Q 001367 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD--TAKDQILAAGDDHVIKIWDM--NKVQLLTT--IDAGG 620 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~~l~~~s~dg~i~iwd~--~~~~~~~~--~~~~~ 620 (1091)
+.. .++.++++++.+.+.+....-.. .....++.+. ....++.+|-.||.+.-+.+ .+|.+... ....
T Consensus 577 g~~---~d~tv~I~sL~~l~~~~~~~L~~--~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG- 650 (1158)
T 3ei3_A 577 GLW---TDISARILKLPSFELLHKEMLGG--EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG- 650 (1158)
T ss_dssp EET---TTTEEEEEETTTCCEEEEEECCS--SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-
T ss_pred EEC---CCCEEEEEECCCCCeEEEEECCC--CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-
Confidence 763 25679999998766554333211 1233333332 23457888999998765544 45655433 2222
Q ss_pred CCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcc
Q 001367 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPE 700 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l 700 (1091)
..++.-..+...+..-+.+..+....++.....-.+..+ ....+..++ .|.... -|+| +
T Consensus 651 -~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l--~~~~v~~~~---------------~F~se~-~~~g--~ 709 (1158)
T 3ei3_A 651 -TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV--NLKEVNYMC---------------PLNSDG-YPDS--L 709 (1158)
T ss_dssp -SSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB--SSSCCCEEE---------------EECCSS-STTE--E
T ss_pred -CCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc--ChHHhceEe---------------ccCccc-CCCc--E
Confidence 224444445545554444555566666654322111111 111121111 111100 1221 2
Q ss_pred cccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCc---------------
Q 001367 701 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN--------------- 765 (1091)
Q Consensus 701 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~--------------- 765 (1091)
+ +..++.+++..++.......+.+. -...+..++++|+.+.++.+..+... ++....
T Consensus 710 v-~~~~~~LrI~~i~~~~~~~~~~ip-----L~~Tprri~y~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 781 (1158)
T 3ei3_A 710 A-LANNSTLTIGTIDEIQKLHIRTVP-----LYESPRKICYQEVSQCFGVLSSRIEV--QDTSGGTTALRPSASTQALSS 781 (1158)
T ss_dssp E-EECSSCEEEEEECCSSSEEEEEEE-----CSSEEEEEEEEGGGTEEEEEEEEEEE--ECSSSSEEESSCCHHHHCSEE
T ss_pred E-EEcCCceEEEEecccCCeeEEEEe-----CCCCceEEEEcCCCCEEEEEEEeccc--cccccccchhhhhhhhhhhhh
Confidence 2 222345777665432222222222 23477899999998876665543211 111000
Q ss_pred --------------ccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE---ecCC-CCEEEEEe-------
Q 001367 766 --------------DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA---LSKN-DAYLFSAS------- 820 (1091)
Q Consensus 766 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~---~s~d-g~~la~~~------- 820 (1091)
....-+.......+++.|+.+.+.+....+.. ...+.+++ |..+ ..++++|.
T Consensus 782 ~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e 858 (1158)
T 3ei3_A 782 SVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 858 (1158)
T ss_dssp EECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TEEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred cccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---CcceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence 00000111234567888888888776766643 44455554 3333 46787764
Q ss_pred ----CCeEEEEEccCceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECC
Q 001367 821 ----GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 895 (1091)
Q Consensus 821 ----dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp 895 (1091)
.|.|.+|++..++...... ...+.+++++-- +|++|| |- ..+|++|++...+.+..-..+-..|..+....
T Consensus 859 ~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~ 934 (1158)
T 3ei3_A 859 AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKT 934 (1158)
T ss_dssp SSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEE
T ss_pred CCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCCCceEEEEeeccccEEEEEEec
Confidence 2679999987544322211 235678887754 455554 33 47899999986654331111222244333434
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCc-------ce
Q 001367 896 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL-------TC 968 (1091)
Q Consensus 896 dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~-------~~ 968 (1091)
.+++++.|..-..|.+...+...... ..+.. +-.. .+++++.|-.++.++++-.+|.+.+...... +.
T Consensus 935 ~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~-D~~~---~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~ 1009 (1158)
T 3ei3_A 935 KGDFILVGDLMRSVLLLAYKPMEGNF-EEIAR-DFNP---NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQH 1009 (1158)
T ss_dssp ETTEEEEEESSBCEEEEEEETTTTEE-EEEEE-CCSC---BCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGB
T ss_pred cCCEEEEEEhhheEEEEEEEcCCCeE-EEEEe-eccc---ccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccce
Confidence 57889989888778776654322111 11111 1111 3688999987776666667788888876531 22
Q ss_pred eeeeecCC-ccCEEEEEE---eeC---------CCEEEEEEcCCcEEEEeC
Q 001367 969 LKQWFPIS-SVPISQATF---SCD---------CRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 969 ~~~~~~~h-~~~v~~v~f---s~d---------g~~l~t~~~dg~v~iwd~ 1006 (1091)
+.....-| ...|+++.- .+. ...++.++.+|.|.+.-.
T Consensus 1010 L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1010 LQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp EEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred eeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 21111112 456666652 222 224677788888887643
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.7e-10 Score=123.57 Aligned_cols=191 Identities=9% Similarity=0.049 Sum_probs=107.3
Q ss_pred CCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcC
Q 001367 854 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 933 (1091)
Q Consensus 854 ~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 933 (1091)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+.++++.+++++.|+.|+.||.++++...............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 456888899999999999999999988876 556666667788888888899999999998876422111110000000
Q ss_pred CCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEE
Q 001367 934 LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1013 (1091)
Q Consensus 934 ~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~ 1013 (1091)
+..++.++..++.+.++.++.||..+|+.+..+... . ...++|++..+++++.|+.|+.||..+|+.+-
T Consensus 86 ------sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 86 ------SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp ------CSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ------CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC-C----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 111123443333367899999999999988764332 1 24567788899999999999999999998765
Q ss_pred EeecccccCCCCcccccceeEEEeCCC--CCCeEEEEecCCcEEEEecCCCCCCcccC
Q 001367 1014 RILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1069 (1091)
Q Consensus 1014 ~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~g~~dg~v~~w~~~~~~~~~~~~ 1069 (1091)
++....+.. .+++++ -+..+++++.||.|+.||...++..|...
T Consensus 155 ~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 155 NATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 443211110 112210 01567889999999999999998889754
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.87 E-value=7.9e-08 Score=108.29 Aligned_cols=235 Identities=9% Similarity=0.010 Sum_probs=158.8
Q ss_pred CCCCEEEEEe--CCeEEEEEccCceeEEEecCC-CCCeEEEEE-c-CCCCcEEEEEe------------------CCCeE
Q 001367 811 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------------DDSTI 867 (1091)
Q Consensus 811 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~~~~~la~g~------------------~dg~i 867 (1091)
+||+++.+.. ++.|.+.|+.+.++.+.+.-+ ......+++ + | ++.++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3899999887 478999999999988855433 346888898 5 8 777887774 34589
Q ss_pred EEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCC--------------------------------------cE
Q 001367 868 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--------------------------------------QI 909 (1091)
Q Consensus 868 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg--------------------------------------~i 909 (1091)
.++|.++.+.+.++.--. .-..++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998887765322 356688999999999888553 35
Q ss_pred EEEEcCC--CceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcc------------eeeeee
Q 001367 910 FVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------------CLKQWF 973 (1091)
Q Consensus 910 ~vwd~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~------------~~~~~~ 973 (1091)
.|.|..+ +... ...+... ....++.+||||++++++ .+++|.++|+.+.+ ......
T Consensus 257 ~VID~~~~~~~~~-~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 257 KVVDGRKEASSLF-TRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEEECSGGGCCSS-EEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEEeCcccCCcee-EEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 5555554 2110 1112211 135689999999999985 56789999999764 222222
Q ss_pred cCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC----------CceEEEeecccccCCCCcccccceeEEEeCCCCCC
Q 001367 974 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1043 (1091)
Q Consensus 974 ~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1043 (1091)
. ......++|++||...++.-.|+.|.+||+.+ ...+.++.. .+.|.+ .-.+.....+| ||+
T Consensus 329 v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh----~~~~~g~t~~~-DGk 400 (595)
T 1fwx_A 329 L--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGH----LKTVMGETLDA-TND 400 (595)
T ss_dssp C--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEE----EEETTTTSTTC-CSS
T ss_pred C--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-cccccc----ceeccceEeCC-CCC
Confidence 2 45788999999995455666799999999987 444545442 222111 11112234677 588
Q ss_pred eEEEEecCC--cE-----------EEEecCCCC
Q 001367 1044 QFAVGLTNG--EV-----------YVIEPNEPG 1063 (1091)
Q Consensus 1044 ~l~~g~~dg--~v-----------~~w~~~~~~ 1063 (1091)
+|++...-. .+ .++|++...
T Consensus 401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 888876533 23 788985444
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.85 E-value=0.0011 Score=83.45 Aligned_cols=285 Identities=9% Similarity=0.060 Sum_probs=142.5
Q ss_pred cEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC----CCEEE
Q 001367 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLG 412 (1091)
Q Consensus 337 V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~la 412 (1091)
-.++++-.+| +++.|+..|.=.+|.+.....-....+.+.| --..-++|..++.... ...|+
T Consensus 329 ~ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~ 394 (1158)
T 3ei3_A 329 AECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLV 394 (1158)
T ss_dssp CSEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEE
T ss_pred ccEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEE
Confidence 3566666666 4678888777777777543210000001100 1123467777776432 23555
Q ss_pred EEE---CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC---CCCceEEEEeeCCCcEEEEeCCCCceeEEec--CC
Q 001367 413 VAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GH 484 (1091)
Q Consensus 413 s~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~ 484 (1091)
+++ .+|.+++..-.-+-.......+.+ ...++.+.... ... +|+.+..+.+ .|+.+. ++.+.... +.
T Consensus 395 ~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~gf 469 (1158)
T 3ei3_A 395 TCSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMGF 469 (1158)
T ss_dssp EEECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTTC
T ss_pred EEECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCcccccccccc
Confidence 554 456787765432211111112222 23455554432 233 5666665555 455432 22232221 11
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC-CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
......++...-+++ .++=.. ...|++.+.+.......+.... ..|...+.+. .+++.+. .+.+..+.+.
T Consensus 470 ~~~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~ 540 (1158)
T 3ei3_A 470 VDDQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIH 540 (1158)
T ss_dssp CSSSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEE
T ss_pred cCCCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEee
Confidence 111111111111111 222122 2335666655444555555443 3566665543 4555553 1236667766
Q ss_pred CceeeEEEecccccccceEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc--cCC
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN--KNG 634 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~------~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~~ 634 (1091)
.++....... . -...|.|+++.|. ++++++|.. |++++|+++.+.+.+........ ....++.+. ...
T Consensus 541 ~~~L~~~~~~-~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~ 617 (1158)
T 3ei3_A 541 PQELRQISHT-E-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESS 617 (1158)
T ss_dssp TTEEEEEEEE-E-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTE
T ss_pred CCceeeeccc-C-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCC
Confidence 5543322111 1 1367999998764 368888986 99999999998777765554322 122333332 234
Q ss_pred CEEEEEECCCeEEEEECC
Q 001367 635 TLLAVIANENRIKILETP 652 (1091)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~ 652 (1091)
.+|.+|-.||.+.-+.+.
T Consensus 618 ~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 618 HYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEEEEEETTSEEEEEEEC
T ss_pred cEEEEEeCCCeEEEEEEc
Confidence 578888899988666543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=8.4e-06 Score=85.53 Aligned_cols=224 Identities=12% Similarity=0.043 Sum_probs=143.2
Q ss_pred ccEEEEEECCCCCEEEEEE-CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 397 VSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
..+..++|++++..|..+. ..+.|..++..++.. .. .+.........+++.+++.. ++++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~--~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TT--IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EE--EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EE--EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4678999999776666554 567999999976542 21 22222346789999998764 4555556789999997644
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEec--CCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
...............+++++. ++.+.++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 322222222245577888543 2344444433 468888887654433333233346788999999888877653 2
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
.+.|..+|.........+.+. .....++.. +..++.+. ..+.|.++|..+++.+..+..... .....+++.|
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~-~~p~gi~~~~ 260 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIAL 260 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEEC
T ss_pred CCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc-cccceeeecC
Confidence 567999998765544333321 234566654 45666655 568999999999999888865431 2357788888
Q ss_pred CCC
Q 001367 633 NGT 635 (1091)
Q Consensus 633 ~~~ 635 (1091)
++.
T Consensus 261 ~~~ 263 (267)
T 1npe_A 261 SQC 263 (267)
T ss_dssp SCC
T ss_pred ccC
Confidence 764
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=0.00064 Score=79.93 Aligned_cols=527 Identities=9% Similarity=-0.007 Sum_probs=276.8
Q ss_pred eEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE-ECCCEEEEEEee
Q 001367 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYH 426 (1091)
Q Consensus 348 ~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~ 426 (1091)
+|+++ ..+.|+..++.+........ + ..-..+..++|++++..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 45554 33778888887654322100 1 123468899999977666655 456788888887
Q ss_pred CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEE-
Q 001367 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI- 505 (1091)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~- 505 (1091)
+... .. .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.|. +|.+.++-
T Consensus 68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 6432 21 22222245778999877664 4455566788999997654432223233345678888654 34444443
Q ss_pred ecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEE
Q 001367 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1091)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~ 585 (1091)
+..+.|...+++......... .......++++++++.|+.+-. +.+.|...|+..... ..+.... .....++
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~gla 214 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLT 214 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEE
T ss_pred CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEE
Confidence 235678888877655444443 4456789999998888877653 356789999876543 3333322 3456777
Q ss_pred EcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceE-EEccCCCEEEEEECCCeEEEEECCCCCeecccccc
Q 001367 586 FDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1091)
Q Consensus 586 ~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 663 (1091)
+.. ..++.+. ..+.|...|..+++....+..... ....+ .+++..+. + ...+. ..
T Consensus 215 v~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~------------~n~C~----~~ 271 (628)
T 4a0p_A 215 QYQ--DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G------------WNECA----SS 271 (628)
T ss_dssp EET--TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C------------CCTTT----TT
T ss_pred EEC--CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c------------ceEec----cC
Confidence 754 3555544 578899999888776666543321 12222 22221110 0 00000 00
Q ss_pred cccceeeeeccc-cccccccccCCcccCCCCCCCC-------CcccccccccccccccccccCCcccceeecCCcccccc
Q 001367 664 SDNLRKLSVNPI-STVTGAGIANGSVSNEDPKEDV-------KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 735 (1091)
Q Consensus 664 ~~~v~~~~~~~~-~~~~~~~~~~g~~~~~~~s~~~-------~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 735 (1091)
......+++... +.. .+.+..|. ...+|+ ..++.+. ...|+-..+..... ....++. .....
T Consensus 272 ng~C~~~C~~~~~~~~-~C~C~~g~----~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~ 341 (628)
T 4a0p_A 272 NGHCSHLCLAVPVGGF-VCGCPAHY----SLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRN 341 (628)
T ss_dssp GGGCSSEEEEETTTEE-EEECSTTC----EECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSC
T ss_pred CCCcchhhhcCCCCCe-eEEcCCCc----EecccCCcCccccceeeeec-cceEEEEecccccC---ceEEEEe-hhcCC
Confidence 000000111000 100 00111110 001111 2222222 23333333321111 0111111 12345
Q ss_pred EEEEEEecCCCeEEEeec-CceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 736 ISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 736 i~~~~~s~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
+..++|.+....|+.+.. .+.|..++...... .. +.............+..+|+...++
T Consensus 342 ~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-----------~~---------v~~~~~~~~~~~~~p~glAvD~~~~ 401 (628)
T 4a0p_A 342 VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-----------FT---------VVVSSVPSQNLEIQPYDLSIDIYSR 401 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------EE---------EEC--------CCCEEEEEEETTTT
T ss_pred ceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-----------eE---------EEEcccccccccCCcceEEeeccCC
Confidence 778999887766665554 46666665432110 00 0000000001234678999999888
Q ss_pred EEEEEe--CCeEEEEEccCceeEEEe-cCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeccCcceeeee-ccccCCe
Q 001367 815 YLFSAS--GGVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKL-EGHSKRV 888 (1091)
Q Consensus 815 ~la~~~--dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~~la~g~~dg--~i~iwd~~~~~~~~~l-~~h~~~V 888 (1091)
.|..++ .+.|.+.++. |+....+ .........+++.|..|.++.+-.... .|...+++ |.....+ ...-...
T Consensus 402 nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P 479 (628)
T 4a0p_A 402 YIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKP 479 (628)
T ss_dssp EEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCE
T ss_pred eEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCc
Confidence 777665 4789999986 4444333 334467899999995565555433333 56666665 4333333 3234457
Q ss_pred EEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCc
Q 001367 889 TGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL 966 (1091)
Q Consensus 889 ~~l~~spdg~~las~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~ 966 (1091)
+.|++.++++.|..+. ..+.|...+++..... .+.. +... ....+++.. +....+ ...+.|...|..+|
T Consensus 480 ~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~~---~P~glav~~-~~ly~tD~~~~~i~~~~k~~G 550 (628)
T 4a0p_A 480 IALALDSRLGKLFWADSDLRRIESSDLSGANRI---VLED--SNIL---QPVGLTVFE-NWLYWIDKQQQMIEKIDMTGR 550 (628)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEC--SSCS---CEEEEEEET-TEEEEEETTTTEEEEEETTSS
T ss_pred cEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE---EEEc--CCCC---CcEEEEEEC-CEEEEEECCCCeEEEEECcCC
Confidence 8999999877766554 4578999999764311 1211 1111 245666644 333333 24456777777666
Q ss_pred ceeee
Q 001367 967 TCLKQ 971 (1091)
Q Consensus 967 ~~~~~ 971 (1091)
+....
T Consensus 551 ~~~~~ 555 (628)
T 4a0p_A 551 EGRTK 555 (628)
T ss_dssp SCCEE
T ss_pred CCcEE
Confidence 65443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-06 Score=103.79 Aligned_cols=201 Identities=11% Similarity=0.089 Sum_probs=130.3
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcce-----------EEEeecccCCceEEEEEecCCeEEEEecCCCCceeee
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1091)
.++.++.++.|..+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 46667778899999999999998875432211 11122 2347888889999999999999988766
Q ss_pred cCCCCc-EEEEEEcC--CCCEEEEEecCC--CCceEEEEEecCCceeeEEEecccc------------------------
Q 001367 526 DAPGLG-CTRMAYSA--NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL------------------------ 576 (1091)
Q Consensus 526 ~~~~~~-i~~~~~s~--d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~------------------------ 576 (1091)
...... ...+..+| .+..++++.... ..++.|+.+|..+|+.+-.+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 542110 00011111 133444443221 1257899999999998877753210
Q ss_pred ----cccceEEEEEcCCCCEEEEEeCCCe-------------------EEEEECCCCeeEEEEeCCCCC-------CCCc
Q 001367 577 ----QHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PENP 626 (1091)
Q Consensus 577 ----~~~~v~~v~~~~~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~v~ 626 (1091)
.......+++.|+...++.++.++. |..+|.++|+.+-.++...+. ....
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 0011124678888889988887763 999999999999888753221 1111
Q ss_pred eEEEccCCC---EEEEEECCCeEEEEECCCCCeecccc
Q 001367 627 RICFNKNGT---LLAVIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 627 ~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
...+..+|+ .+++++.+|.++++|..+++.+....
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 122233665 68889999999999999998875543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-05 Score=84.27 Aligned_cols=255 Identities=11% Similarity=0.015 Sum_probs=155.2
Q ss_pred CEEEEEECCCEEEEEEeeCCcccc--eeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
.+|..+.. +.|+.+++.+..... ....+......+..++|++++.. ++++...++.|.++++..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555543 468888887654211 01112222345789999997764 455555678999999876654333333334
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
....+++++. ++.+.++....+.|.+++++.................++++|++..|+.+.... ..+.|..+++....
T Consensus 80 ~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTN 157 (267)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCC
T ss_pred CccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCCC
Confidence 5678888543 345566666778999999876544333333334568999999777766554321 13568888875432
Q ss_pred eeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE-CCC
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NEN 644 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg 644 (1091)
...+.... ......+++++++..|+.+. ..+.|.+++............. .....++.. +..++++. ..+
T Consensus 158 -~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~~ 229 (267)
T 1npe_A 158 -RRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKTN 229 (267)
T ss_dssp -CEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTTT
T ss_pred -cEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCCC
Confidence 22332111 24678899999887776655 5689999999865544444321 123456554 45555555 568
Q ss_pred eEEEEECCCCCeeccccccc-ccceeeeeccc
Q 001367 645 RIKILETPESNSVDAAGVLS-DNLRKLSVNPI 675 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~ 675 (1091)
.|..++..+++.+..+.... .....+++.|+
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 99999999887776665332 23455555443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-06 Score=100.85 Aligned_cols=194 Identities=13% Similarity=0.156 Sum_probs=130.2
Q ss_pred CCeEEEEEccCceeEEEecCCC--C-----------------------------CeEEEEEcCCCCcEEEEEeCCC----
Q 001367 821 GGVISLYIVMTFKTILTIMPPS--P-----------------------------TATSLAFNPHDNNVIAIGMDDS---- 865 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~~~~~~~--~-----------------------------~i~~l~~s~~~~~~la~g~~dg---- 865 (1091)
+|.|..+|..+|+.+.++.... . ....++++| +..++++++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 3789999999999988765210 0 012468888 666788887776
Q ss_pred ---------------eEEEEeccCcceeeeecc--cc-------CCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCc
Q 001367 866 ---------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 918 (1091)
Q Consensus 866 ---------------~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg~---~las~s~Dg~i~vwd~~~~~ 918 (1091)
.|..+|..+|+.+..++. |. .+.....+..+|+ .++.++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 499999999998876653 32 2232233334675 68889999999999999988
Q ss_pred eeeeeeeec---------cCCCc--------C------CC-----CCceEEEEcCCCCEEEEE-----------------
Q 001367 919 IQTCRSLQT---------PDGVM--------T------LA-----PSETHIQFHKDQTRFLLV----------------- 953 (1091)
Q Consensus 919 ~~~~~~~~~---------~~~~~--------~------~~-----~~i~~l~fs~dg~~la~~----------------- 953 (1091)
......+.. ..+.. . .+ ..-..++++|+...+.+.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 652111100 00000 0 00 001237888887776541
Q ss_pred --------------------ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEE
Q 001367 954 --------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1013 (1091)
Q Consensus 954 --------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~ 1013 (1091)
.++.|..||..+|+.+.+... ..+.....+...|.++++++.||.|+.||..+|+.+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 137799999999998876543 2233444556678899999999999999999999998
Q ss_pred Eeec
Q 001367 1014 RILS 1017 (1091)
Q Consensus 1014 ~~~~ 1017 (1091)
++..
T Consensus 494 ~~~~ 497 (668)
T 1kv9_A 494 QFEA 497 (668)
T ss_dssp EEEC
T ss_pred EecC
Confidence 7763
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=6.5e-07 Score=91.50 Aligned_cols=199 Identities=12% Similarity=0.077 Sum_probs=137.2
Q ss_pred CeeEEEecCCCCEEEEEe---CCeEEEEEccCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCccee
Q 001367 803 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 878 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~ 878 (1091)
....++|++|+.+.++.+ ++.|+++|+.+++.+.++.... .....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 457899999876555544 4789999999999998876332 233456665 3455566667899999999999988
Q ss_pred eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCe
Q 001367 879 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 957 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~ 957 (1091)
.++...... ...+++||+.|+.+..++.|.++|..+.+......+... +... ..+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~--~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRV--IRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Cccc--ccceeEEEE-CCEEEEecCCCCe
Confidence 887532121 234566888777777788999999988665443222211 1111 135677888 77555544 5689
Q ss_pred EEEEEcCCcceeeeeecCC------------ccCEEEEEEeeCCCEE-EEEEcCCcEEEEeCCCC
Q 001367 958 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRMV-FTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 958 i~vwd~~~~~~~~~~~~~h------------~~~v~~v~fs~dg~~l-~t~~~dg~v~iwd~~~~ 1009 (1091)
|.+.|..+++.+..+..+. ......|+|+|+++.+ +++...+.|.+.++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999888765321 1356889999998754 55556788888887654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=8.5e-06 Score=94.89 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=104.4
Q ss_pred EEEEcCCCCcEEEEEeCC----------------CeEEEEeccCcceeeeecc--cc--------CCeEEEEEC-CCC--
Q 001367 847 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL-- 897 (1091)
Q Consensus 847 ~l~~s~~~~~~la~g~~d----------------g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pdg-- 897 (1091)
.+++.+ ...++..++.+ +.|.-+|..+|+.+..++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 356666 45566666654 4899999999998866653 21 1222 2222 567
Q ss_pred -CEEEEEeCCCcEEEEEcCCCceeeeeeeec----------cCCCcC---------------------CCCCceEEEEcC
Q 001367 898 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVMT---------------------LAPSETHIQFHK 945 (1091)
Q Consensus 898 -~~las~s~Dg~i~vwd~~~~~~~~~~~~~~----------~~~~~~---------------------~~~~i~~l~fs~ 945 (1091)
+.++.++.+|.+.+.|..+++..-...+.. ..+... -...-..++|+|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567778999999999999987543222110 000000 000113567788
Q ss_pred CCCEEEEE----------------------------------------ecCeEEEEEcCCcceeeeeecCCccCEEEEEE
Q 001367 946 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF 985 (1091)
Q Consensus 946 dg~~la~~----------------------------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~f 985 (1091)
+..++.+. ..+.|..||+.+++.+.+...+ .++..-..
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 480 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM 480 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence 77766541 2357888999999887664322 12222223
Q ss_pred eeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 986 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 986 s~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
...|.+++.++.||.++.||..+|+.+-++.
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 4467788889999999999999999987775
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-06 Score=86.57 Aligned_cols=217 Identities=10% Similarity=0.009 Sum_probs=143.9
Q ss_pred ceeEEEecCCCC--CeEEEEEcCCCCcEEEEEeC--CCeEEEEeccCcceeeeeccccC-CeEEEEECCCCCEEE-EEeC
Q 001367 832 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALNILV-SSGG 905 (1091)
Q Consensus 832 ~~~~~~~~~~~~--~i~~l~~s~~~~~~la~g~~--dg~i~iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~la-s~s~ 905 (1091)
.+.+.++. |.. ....++|++ ++.+.++.+. ++.|.++|+.+++.+..+.-... ....+++. ++.|. +.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 45566664 332 468999999 6765555443 57999999999998877642211 22345554 44554 4456
Q ss_pred CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcceeeeeecCC----ccCE
Q 001367 906 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI 980 (1091)
Q Consensus 906 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h----~~~v 980 (1091)
++.+.++|..+.+.... +.. + .. ....+++||+.|.++ .+++|.++|..+.+.+..+..+. -..+
T Consensus 85 ~~~v~viD~~t~~v~~~--i~~--g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKN--FTH--Q-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEE--EEC--C-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEE--EEC--C-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 78999999998664432 221 1 11 123466788877764 46789999999988887765442 1246
Q ss_pred EEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCC---CCcccccceeEEEeCCCCCCeEEEEecCCcEEEE
Q 001367 981 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1057 (1091)
Q Consensus 981 ~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w 1057 (1091)
..+.|. ||+..+....++.|.+.|..+++....+......+. ..+.....+.-++|+|+...+++++...+.|++.
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 778888 786555555678999999999999988874321110 0011123445789999656678888889999999
Q ss_pred ecCCCC
Q 001367 1058 EPNEPG 1063 (1091)
Q Consensus 1058 ~~~~~~ 1063 (1091)
++....
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 996643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.8e-05 Score=89.71 Aligned_cols=196 Identities=8% Similarity=-0.068 Sum_probs=118.1
Q ss_pred EEEecCCCCEEEEEeC-----------------CeEEEEEccCceeEEEecCCC---------CCeEEEEEcCCCC---c
Q 001367 806 CFALSKNDAYLFSASG-----------------GVISLYIVMTFKTILTIMPPS---------PTATSLAFNPHDN---N 856 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~d-----------------g~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~~~---~ 856 (1091)
.+++.++...+..+.. +.|..+|..+|+.+..++... ....-+.... +| +
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence 3556666566655541 359999999999987765321 1111122224 56 4
Q ss_pred EEEEEeCCCeEEEEeccCcceeeeecccc-------------CCe--------------------------EEEEECCCC
Q 001367 857 VIAIGMDDSTILIYNARSSEVISKLEGHS-------------KRV--------------------------TGLVFSDAL 897 (1091)
Q Consensus 857 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~spdg 897 (1091)
+++.++.+|.++++|..+|+.+....-.. .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67789999999999999998876543211 111 235778887
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCc
Q 001367 898 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISS 977 (1091)
Q Consensus 898 ~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~ 977 (1091)
.++.....+....++..... ...+..- ...-..+..+|.+. ....++.|..||..+++.+.+...+
T Consensus 398 g~~yv~~~~~~~~~~~~~~~---------~~~g~~~-~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~-- 463 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLP---------YRAGQFF-VGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK-- 463 (571)
T ss_dssp TEEEEEEECEEEEEEECCCC---------CCTTSCC-CCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred CEEEEEchhccccccccccc---------cccCCcc-ccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence 88777776655555544321 0011100 00011122233321 0013578999999999887765432
Q ss_pred cCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 978 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 978 ~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
..+....+...+..+++++.||.|+.||..+|+.+-++.
T Consensus 464 ~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 464 FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 223333344556778889999999999999999997776
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-05 Score=90.91 Aligned_cols=376 Identities=11% Similarity=0.012 Sum_probs=201.8
Q ss_pred EEEEeeC-CCcEEEEeC-CCCceeEEecCCCcc-e----------EEEeecccCCceEEEEEecCCeEEEEecCCCCcee
Q 001367 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-V----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 523 (1091)
Q Consensus 457 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~-v----------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 523 (1091)
.++.++. ++.|..+|. .+|+.+.++...... + ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3556666 889999999 899998887533210 0 11222 23478888899999999999998887
Q ss_pred eecCCCC----cEE-EEEEcCCCCEEEEEecCC--CCceEEEEEecCCceeeEEEeccccc-------------------
Q 001367 524 DYDAPGL----GCT-RMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 577 (1091)
Q Consensus 524 ~~~~~~~----~i~-~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 577 (1091)
....... .+. +... .++ .++++.... ..++.|+.+|..+|+.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 111 1111 134 455443211 01568999999999988776543200
Q ss_pred ---------------cc-ceEEEEEcCCCCEEEEEeCC----------------CeEEEEECCCCeeEEEEeCCCCC---
Q 001367 578 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 622 (1091)
Q Consensus 578 ---------------~~-~v~~v~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 622 (1091)
.. ....+++.++...++.+..+ +.|..+|.++|+.+-.++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 00235667777777776542 36999999999998887654210
Q ss_pred -CCCce---EEEccCCC---EEEEEECCCeEEEEECCCCCeecccccccc--cceeeeeccccccccccccCCcccCCCC
Q 001367 623 -PENPR---ICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSNEDP 693 (1091)
Q Consensus 623 -~~v~~---v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~g~~~~~~~ 693 (1091)
..+.. +....+|+ .++.++.+|.++++|..+++.+........ ....+..
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence 01111 22224674 577888899999999999987765432210 0000100
Q ss_pred CCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccce
Q 001367 694 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 773 (1091)
Q Consensus 694 s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 773 (1091)
..+..+..... .. .+.....+..+.......-..++++|+...+++...+....++..+..
T Consensus 357 -~~g~p~~~~~~-------~~---~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~-------- 417 (571)
T 2ad6_A 357 -KTGTPVRDPEF-------AT---RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP-------- 417 (571)
T ss_dssp -TTCSEEECGGG-------CC---CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC--------
T ss_pred -cCCceeccccc-------CC---CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc--------
Confidence 00000000000 00 000000011111000111135688999888888776644444332110
Q ss_pred eeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCC
Q 001367 774 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPH 853 (1091)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 853 (1091)
...+. ..-.....+..+|.+. ....+|.|..||..+++.+.++.... .+....+..
T Consensus 418 ----------~~~g~----------~~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t- 473 (571)
T 2ad6_A 418 ----------YRAGQ----------FFVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT- 473 (571)
T ss_dssp ----------CCTTS----------CCCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-
T ss_pred ----------cccCC----------ccccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-
Confidence 00010 0000011122233321 00124789999999998887765322 222222222
Q ss_pred CCcEEEEEeCCCeEEEEeccCcceeeeeccccCC-eEEEEECCCCCEEEE
Q 001367 854 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 902 (1091)
Q Consensus 854 ~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~las 902 (1091)
.+.++++++.||.|+.+|..+|+.+.++...... -..+.+..+|+.++.
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 3446777999999999999999998877643221 122345567765543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-05 Score=91.31 Aligned_cols=378 Identities=11% Similarity=0.039 Sum_probs=199.7
Q ss_pred EEEEeeC-CCcEEEEeC-CCCceeEEecCCCcc-----------eEEEeecccC--CceEEEEEecCCeEEEEecCCCCc
Q 001367 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKE--NIHFIFSISVDGKIKAWLYDSLGA 521 (1091)
Q Consensus 457 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~ 521 (1091)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.+.. ....++.++.|+.+.-+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666666 889999999 899999887543221 1122331111 112378888999999999999988
Q ss_pred eeeecCCCC----cEE-EEEEcCCCCEEEEEecCC--CCceEEEEEecCCceeeEEEecccccc----------------
Q 001367 522 RVDYDAPGL----GCT-RMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH---------------- 578 (1091)
Q Consensus 522 ~~~~~~~~~----~i~-~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~---------------- 578 (1091)
+........ .+. ...+ .++ .+++++... ..++.|+-+|..+|+.+-.+.......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 876544321 111 1111 144 444443211 025789999999999887765432100
Q ss_pred ------------------cce-EEEEEcCCCCEEEEEeCC----------------CeEEEEECCCCeeEEEEeCCCCCC
Q 001367 579 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 579 ------------------~~v-~~v~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
..+ ...++.++...++.+..+ +.|..+|.++|+.+-.++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 000 134566777888887665 389999999999998877643210
Q ss_pred ----CCce-EEEc---cCC---CEEEEEECCCeEEEEECCCCCeeccccccccc--ceeeeeccccccccccccCCcccC
Q 001367 624 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSN 690 (1091)
Q Consensus 624 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~g~~~~ 690 (1091)
.... +.+. .+| +.++.++.+|.++++|..+++.+......... ...+..
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~------------------ 363 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL------------------ 363 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT------------------
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc------------------
Confidence 0111 2222 467 56777889999999999999877654321100 000000
Q ss_pred CCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccc
Q 001367 691 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 770 (1091)
Q Consensus 691 ~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~ 770 (1091)
+.++.+.... ... .+.....+..|.......-..++++|+...+++...+....++-.+..
T Consensus 364 ----~~g~p~~~~~---------~~~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~----- 424 (599)
T 1w6s_A 364 ----KTGQPVRDPE---------YGT-RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP----- 424 (599)
T ss_dssp ----TTCCEEECGG---------GCC-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC-----
T ss_pred ----CCCceeeccc---------cCC-CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc-----
Confidence 0000000000 000 000001111111111122235789999887777766533322211000
Q ss_pred cceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEE-EE
Q 001367 771 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATS-LA 849 (1091)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~-l~ 849 (1091)
...+.. .-..-..+..+|.+........|.|..||+.+++.+.+.......... ++
T Consensus 425 -------------~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~ 481 (599)
T 1w6s_A 425 -------------YKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMA 481 (599)
T ss_dssp -------------CCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEE
T ss_pred -------------ccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceE
Confidence 000100 000000011122110000002477889999999887766422111111 22
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCe-EEEEECCCCCE
Q 001367 850 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNI 899 (1091)
Q Consensus 850 ~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~ 899 (1091)
. .+.++++++.||.++.||..+|+.+.+++-..+.+ .-+.+..||+.
T Consensus 482 t---agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 482 T---AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp E---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred e---cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 2 34467779999999999999999998776433221 22455567764
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=6.2e-05 Score=87.95 Aligned_cols=377 Identities=12% Similarity=0.083 Sum_probs=199.4
Q ss_pred EEEeeCCCcEEEEeCCCCceeEEecCCCcce---------EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC
Q 001367 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1091)
Q Consensus 458 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 528 (1091)
++.++.++.|..+|..+|+.+.++....... ..+++ .+..++.++.++.|.-+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445553449999999999988875433210 11122 2246788889999999999999988765443
Q ss_pred CC----cEE-EEEEcC---CCC-EEEEEecCC--CCceEEEEEecCCceeeEEEeccccc--------------------
Q 001367 529 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 577 (1091)
Q Consensus 529 ~~----~i~-~~~~s~---d~~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 577 (1091)
.. .+. ...+.. +|+ .++++.... ..++.|+-+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 454443211 12678999999999887655431100
Q ss_pred ------------------ccceEEEEEcCCCCEEEEEeC--------------------C----CeEEEEECCCCeeEEE
Q 001367 578 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 578 ------------------~~~v~~v~~~~~~~~l~~~s~--------------------d----g~i~iwd~~~~~~~~~ 615 (1091)
...-...++.|+...++.+.. | +.|..+|..+|+.+-.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000123566777788887663 2 5899999999999988
Q ss_pred EeCCCCC----CCCce-EEEc---cCCC---EEEEEECCCeEEEEECCCCCeecccccccc--cceeeeecccccccccc
Q 001367 616 IDAGGGL----PENPR-ICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG 682 (1091)
Q Consensus 616 ~~~~~~~----~~v~~-v~~s---~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~ 682 (1091)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+++.+........ ....+.... ++.
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~-g~p---- 381 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKT-GRP---- 381 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTT-CCE----
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccC-CCE----
Confidence 7653221 01111 2222 4674 788899999999999999988766543321 111111000 000
Q ss_pred ccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeec
Q 001367 683 IANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 683 ~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
+....+.|.. +.. .+ +........|.......-..++++|+...+++...+-...++..
T Consensus 382 -----~~~~~~~~~~--~~~--~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~ 440 (582)
T 1flg_A 382 -----VEREGQRPPL--PEP--GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTE 440 (582)
T ss_dssp -----EECTTCSCCC--CCT--TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEEC
T ss_pred -----eEccccCCcc--ccc--cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecc
Confidence 0000001000 000 00 00000111111101111125678888776776665533333321
Q ss_pred CCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCC
Q 001367 763 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS 842 (1091)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~ 842 (1091)
+.. ...| ....-..+...|++. ..+|.|..||+.+++.+.+.....
T Consensus 441 ~~~------------------~~~g------------~~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~~ 486 (582)
T 1flg_A 441 EVS------------------YTKG------------SAYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEHL 486 (582)
T ss_dssp CCC------------------CCTT------------SCCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEESS
T ss_pred ccc------------------ccCC------------CceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCCC
Confidence 100 0001 111111122223310 125789999999999887665332
Q ss_pred CCeE-EEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCe-EEEEECCCCCEEE
Q 001367 843 PTAT-SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV 901 (1091)
Q Consensus 843 ~~i~-~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~la 901 (1091)
.... .++. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..||+..+
T Consensus 487 ~~~~g~~~t---agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 487 PLWAGVLAT---AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp CCCSCCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCcccceEe---CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 2111 1222 24477779999999999999999998887543322 2256667776443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=9.9e-05 Score=86.22 Aligned_cols=149 Identities=12% Similarity=0.089 Sum_probs=95.1
Q ss_pred CeEEEEeccCcceeeeecc--cc--------CCeEEEEEC-CCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeec---
Q 001367 865 STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT--- 927 (1091)
Q Consensus 865 g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pdg~---~las~s~Dg~i~vwd~~~~~~~~~~~~~~--- 927 (1091)
+.|.-+|..+|+.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+++..-......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 6899999999998876642 32 1221 1221 4674 78889999999999999987543221110
Q ss_pred ---------------cCCCc--------C------CC-----CCceEEEEcCCCCEEEE-Ee------------------
Q 001367 928 ---------------PDGVM--------T------LA-----PSETHIQFHKDQTRFLL-VH------------------ 954 (1091)
Q Consensus 928 ---------------~~~~~--------~------~~-----~~i~~l~fs~dg~~la~-~~------------------ 954 (1091)
..... . .+ ..-..++++|+...+.+ ..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00000 0 00 00124677887665554 21
Q ss_pred ---------------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 955 ---------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 955 ---------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
++.|..||+.+|+.+.+...+ .++..-.....|.++++++.||.++.||..+|+.+-++.
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 467999999999988665432 222222233456788889999999999999999997776
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-05 Score=97.92 Aligned_cols=248 Identities=10% Similarity=-0.004 Sum_probs=135.0
Q ss_pred CcEEEEEc-CCCceEEEEEcCCC----cEEEEEcCCC-CceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 336 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 336 ~V~~v~fs-pdg~~llasg~~dg----~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
.+...+|| |||++++.+.+.+| +|+++|+.+| +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 57889999 99997655554443 4999999998 64321 0 11 1134688999999
Q ss_pred EEEEEECC-----CEEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEee-CCCcEEEEeCCCCc-ee--E
Q 001367 410 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y 479 (1091)
Q Consensus 410 ~las~~~d-----~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~ 479 (1091)
.|+....+ ..|+++++.++...... .+. ........+.|||||+++++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99888765 36788888776432111 222 223346788999999963333322 23468889988763 22 3
Q ss_pred Eec-CCCcceEEEeecccCCceEEEEEecC--C--eEEEEecCCCCceee-ecCCCC--cEEEEEEcCCCCEEEEEecCC
Q 001367 480 SFE-GHGAPVYSLCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 480 ~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~iwd~~~~~~~~~-~~~~~~--~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
.+. .......++.|+ .++.+++....+ + .|..+++.+...... +..+.. .+..+.+ ++..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 342 334455555432 233344444443 2 566667654222122 222222 3444444 4566655443 2
Q ss_pred CCceEEEEEec-------CCceeeEEEecccccccceEEEEE----cCCCCEE-EEEeC---CCeEEEEECCCCee
Q 001367 552 EGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGD---DHVIKIWDMNKVQL 612 (1091)
Q Consensus 552 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~v~~----~~~~~~l-~~~s~---dg~i~iwd~~~~~~ 612 (1091)
++...|+++++ .+++....+.... ...+..+.+ ++++..+ ++.+. -+.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34667888886 3443123332211 112233322 3455544 44332 24677888877764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.54 E-value=5e-06 Score=83.62 Aligned_cols=185 Identities=12% Similarity=0.105 Sum_probs=124.9
Q ss_pred CeeEEEecCCCCEEEEEe-CC--eEEEEEccCceeEEEecCCCCC-eEEEEEcCCCCcEEEEEeCCCeEEEEeccCccee
Q 001367 803 AVPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 878 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~-dg--~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~ 878 (1091)
-...+.|+ ++.+..+.+ +| .|+.+|+++++.++++...... ...+++. ++++.+..-.++.+.+||..+.+.+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 34788898 666555555 44 7999999999999888644322 2335554 4455555556899999999999999
Q ss_pred eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCe
Q 001367 879 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 957 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~ 957 (1091)
.++.... ....+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|+..|.. .++.
T Consensus 121 ~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 121 RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCe
Confidence 8887432 223344577777766667889999999876554333321 12111 134457776 77766554 5779
Q ss_pred EEEEEcCCcceeeeeecCC-----------ccCEEEEEEeeCCCEEEEEEc
Q 001367 958 LAIYEAEELTCLKQWFPIS-----------SVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 958 i~vwd~~~~~~~~~~~~~h-----------~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
|.+.|.++|+.+..+..+. ..-...|+|+|+++.|++.+.
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999999887754321 234578999999888777665
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.50 E-value=0.0071 Score=73.88 Aligned_cols=572 Identities=13% Similarity=0.083 Sum_probs=299.0
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 413 (1091)
...|.++.-..+|... .|+.+| +..||-.+ ... +. . . -......|.++....+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~---~~~--~~---~------~----~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW--IGSNKG-LFSYDGYS---TQQ--HF---T------Y----GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEE--EEESSC-EEEECSSC---EEE--CS---C------T----TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCEE--EEECCC-ccccCCCc---eEE--EE---c------c----CCCCCceEEEEEEcCCC-cEEE
Confidence 3489999999999733 344555 55666221 111 00 0 0 00123578888877766 5555
Q ss_pred EECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec-----CCCcce
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPV 488 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v 488 (1091)
|+.+| +..||..++..... .......|.++.. .+|. |..++.+ -+..+|..+++.. .+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~~---~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQP---ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECCC---SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEECc---ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66665 78999877532110 0112234776654 3554 4445544 5888997766543 231 123456
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceee-ecC----CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
.++.. +.++.+. .++.+| +..++..+...... ... ....|.++...+++..|..+.. +-+..+|..
T Consensus 149 ~~i~~--d~~g~lW-igt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIR--TKDNQIY-VGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEE--CTTCCEE-EEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEE--cCCCCEE-EEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 66665 3344444 455544 66677655432211 111 1224788888777765555442 128889987
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC-----CCCCCceEEEccCCCEEE
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~ 638 (1091)
+++........ ...|.++....++... .|+. +-+.+++..+++......... ....|.++....+|. |.
T Consensus 220 ~~~~~~~~~l~---~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 293 (758)
T 3ott_A 220 TGQIKQTEAFH---NNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IW 293 (758)
T ss_dssp TTEEEEEEEEE---EEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EE
T ss_pred CCeEEeccCCC---CCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EE
Confidence 76543322111 2468888887777654 4454 458888887765433221111 112466676666665 44
Q ss_pred EEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccC
Q 001367 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFAR 718 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~ 718 (1091)
+|+..| +.++.... .+.... ...
T Consensus 294 iGT~~G-l~~~~~~~--~~~~~~----------~~~-------------------------------------------- 316 (758)
T 3ott_A 294 LGTDYG-ISLSRYNS--ALQFIP----------ISQ-------------------------------------------- 316 (758)
T ss_dssp EEESSS-EEEECCCC---CEEEE----------HHH--------------------------------------------
T ss_pred EEeCCc-ccccccCC--ceeEEe----------ccc--------------------------------------------
Confidence 555555 44332111 110000 000
Q ss_pred CcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCC
Q 001367 719 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 798 (1091)
Q Consensus 719 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1091)
.........|.++....+|...+. +.+| +..++...... .....+...... ..
T Consensus 317 --------~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~---------~~~~~~~~~~~~----~~---- 369 (758)
T 3ott_A 317 --------ITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGER---------HDAIWYRMGDKT----YP---- 369 (758)
T ss_dssp --------HSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSC---------CCCEEECTTCSS----SC----
T ss_pred --------CCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccccccc---------ceeEEeccCCcC----CC----
Confidence 000002235777777778875444 4455 33443221100 000111110000 00
Q ss_pred CCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEe--cC----CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEec
Q 001367 799 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
-....|.++...++|++.+.. ++.+..||..+++...-. .. ....|.++...+ ++++ -.|+..+-+.++|.
T Consensus 370 l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~l-WigT~~~Gl~~~~~ 446 (758)
T 3ott_A 370 LSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQL-WISTCLGGIFVVDK 446 (758)
T ss_dssp CSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEE-EEEESSSCEEEEEH
T ss_pred CCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCE-EEEECCCceEEEcc
Confidence 023568899988888877655 668999998877654321 11 234578888877 5654 44776666888886
Q ss_pred cCc-----cee---eeec---c-ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceE
Q 001367 873 RSS-----EVI---SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 940 (1091)
Q Consensus 873 ~~~-----~~~---~~l~---~-h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 940 (1091)
.+. ... ..+. + ....|.++...++|++.+.++..+-|..+|..+++... +.. .+.. ....+.+
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~~-~~~~-~~~~~~~ 521 (758)
T 3ott_A 447 HKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LFA-DELT-GEKSPNY 521 (758)
T ss_dssp HHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---ECT-TTSC-GGGCEEE
T ss_pred ccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ecC-CCcC-CCcccce
Confidence 531 111 1111 1 12358999999999887644444558889988765332 111 1110 0124778
Q ss_pred EEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecC-CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeeccc
Q 001367 941 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1019 (1091)
Q Consensus 941 l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~ 1019 (1091)
+....+|.+.+.+. +.+..||..++....-...+ ....|.++... +|.+.+ ++..| +..++..+..... +.
T Consensus 522 i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi-~t~~G-l~~~~~~~~~~~~-~~--- 593 (758)
T 3ott_A 522 LLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWV-STTNG-LWIIDRKTMDARQ-QN--- 593 (758)
T ss_dssp EEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEE-EESSC-EEEEETTTCCEEE-C----
T ss_pred EEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCCEEE-ECCCC-eEEEcCCCceeEE-ec---
Confidence 88889998887654 56888887665432210111 13567888763 665444 55565 7788888765432 11
Q ss_pred ccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 1020 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1020 ~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
++.. .+.. .+...+ ...|..|+.+|- ..++...
T Consensus 594 -~~~~----~~~~-~~~~~~--~G~l~fG~~~Gl-~~f~p~~ 626 (758)
T 3ott_A 594 -MTNK----RFTS-LLFDPK--EDCVYLGGADGF-GISHSNL 626 (758)
T ss_dssp --CCC----CCSE-EEEETT--TTEEEEECBSEE-EEEEC--
T ss_pred -CCCC----ceee-eEEECC--CCcEEEecCCce-EEEChhh
Confidence 1221 1221 222233 356777877774 4556543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-05 Score=80.40 Aligned_cols=184 Identities=14% Similarity=0.077 Sum_probs=128.4
Q ss_pred eeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCceeEEecCCCcce-EEEeecccCCceEEEEEecCCeEEEEecCCCC
Q 001367 444 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1091)
Q Consensus 444 v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 520 (1091)
...+.|+ ++. ++++.+.+| .|+++|+++|+.+.++....... -.+++ .+ +.+.+..-.++.+.++|..+.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCc
Confidence 4778888 554 666777665 89999999999998875433221 22443 32 3455555668999999999999
Q ss_pred ceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc--cccceEEEEEcCCCCEEEEEe-
Q 001367 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAG- 597 (1091)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~s- 597 (1091)
....+..... ...+++|++.|+... +...|.++|..+.+.+..+..... ....++.+.|. +|. +++..
T Consensus 119 ~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w 189 (262)
T 3nol_A 119 QVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVW 189 (262)
T ss_dssp EEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET
T ss_pred EEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEc
Confidence 8887765432 234446788777753 256799999999988887765320 11334567776 564 55544
Q ss_pred CCCeEEEEECCCCeeEEEEeCCCC----------CCCCceEEEccCCCEEEEEEC
Q 001367 598 DDHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
.++.|.+.|..+++.+..+...+- ....+.++++|+++.|++.+.
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 688999999999999999876421 123478999999888887766
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.7e-06 Score=83.09 Aligned_cols=184 Identities=9% Similarity=0.084 Sum_probs=123.9
Q ss_pred CCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCe--EEEEEcCCCCcEEEEEeCCCeEEEEeccCccee
Q 001367 802 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 878 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~ 878 (1091)
.-...+.|+. +.+..+.+ +|.|+++|+++++.++.+ .. ... ..+++. ++++.+..-.++.+.+||..+.+.+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 3446788873 44444444 688999999999998887 22 233 346664 4456666667899999999999999
Q ss_pred eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCe
Q 001367 879 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 957 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~ 957 (1091)
.++... ..-..++ +|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|+..|.. .++.
T Consensus 130 ~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v--~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 130 RTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPV--ELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCccc--ccccccEEe-CCEEEEEECCCCe
Confidence 888742 2223444 578888877778999999999876554333322 11111 134567776 77655554 5679
Q ss_pred EEEEEcCCcceeeeeecC----------C--ccCEEEEEEeeCCCEEEEEEc
Q 001367 958 LAIYEAEELTCLKQWFPI----------S--SVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 958 i~vwd~~~~~~~~~~~~~----------h--~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
|.+.|.++|+.+..+..+ + ..-...|+++|+++.|++.+.
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999999988765432 1 235578999998766555543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=9.7e-05 Score=79.85 Aligned_cols=239 Identities=11% Similarity=0.065 Sum_probs=145.2
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEe-cC------------------CCCCeEEEEEcCCCCcEEEEEe
Q 001367 803 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-MP------------------PSPTATSLAFNPHDNNVIAIGM 862 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~-~~------------------~~~~i~~l~~s~~~~~~la~g~ 862 (1091)
...+++++++|+++.++. ++.|..|+..+++...-. .. ....+..+++.+++++ |.++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 456788999998666665 688999988765433211 00 0135788999973454 44455
Q ss_pred CCCeEEEEeccCcceeeeec----c-ccCCeEEEEECC-CCCEEEEEeC-----------------CCcEEEEEcCCCce
Q 001367 863 DDSTILIYNARSSEVISKLE----G-HSKRVTGLVFSD-ALNILVSSGG-----------------DAQIFVWDVDGWGI 919 (1091)
Q Consensus 863 ~dg~i~iwd~~~~~~~~~l~----~-h~~~V~~l~~sp-dg~~las~s~-----------------Dg~i~vwd~~~~~~ 919 (1091)
..+.|..+|..+++. ..+. + .......+++.+ +|++.++-.. ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 556688898876543 2221 1 123478899999 9988776532 36788888876553
Q ss_pred eeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcc--eeeeeecCCccCEEEEEEeeCCCEEEEE
Q 001367 920 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTS 995 (1091)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~v~fs~dg~~l~t~ 995 (1091)
.. ...... ....++|+|||+.|.++ ..+.|.+|++.... ....+.. ..+ ...+++.++|.+.++.
T Consensus 178 ~~--~~~~~~-------~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 178 TL--LLKELH-------VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp EE--EEEEES-------CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEE
T ss_pred EE--eccCCc-------cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEe
Confidence 22 111111 24579999999977664 45789999987532 1111111 123 7789999999877765
Q ss_pred Ec----------CCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 996 FV----------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 996 ~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
.. .+.|..+|.. |+.+..+......+ ...+. .+++. ++.++++...++.|..+++....
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~----~~~~~--~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA----GEHFE--QIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT----TSCCC--EEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred cCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc----cccce--EEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 44 4668888864 66666554221110 11122 33443 46677776778899999985443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00054 Score=73.82 Aligned_cols=279 Identities=9% Similarity=0.061 Sum_probs=151.1
Q ss_pred cccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC
Q 001367 733 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812 (1091)
Q Consensus 733 ~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 812 (1091)
...+.++.|.+++..++ ++..|.+... .+.. +-|.... .........+.++++.+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~s-~DgG--------------~tW~~~~--------~~~~~~~~~~~~i~~~~- 89 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLMET-RDGG--------------QTWEPRT--------LVLDHSDYRFNSVSFQG- 89 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEEEE-SSTT--------------SSCEECC--------CCCSCCCCEEEEEEEET-
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEEEe-CCCC--------------CCCeECC--------CCCCCCCccEEEEEecC-
Confidence 34688888887777566 4556654321 1111 1122111 00001244678899986
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce-eeeeccccCCe
Q 001367 813 DAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRV 888 (1091)
Q Consensus 813 g~~la~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~-~~~l~~h~~~V 888 (1091)
+..++++..+.|.. ....|+.-.... .....+..+++.+ ++.+++++ .+|.|.. ..+.|+. .....++...+
T Consensus 90 ~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~ 165 (327)
T 2xbg_A 90 NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVM 165 (327)
T ss_dssp TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCE
T ss_pred CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcce
Confidence 55666666675443 222233222222 2234577888877 67666655 4554432 2222332 22223455678
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcce
Q 001367 889 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 968 (1091)
Q Consensus 889 ~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~ 968 (1091)
.++++.+++.+++.+...+..+-+|-.... ...+.. ... ..+..++++++++.++++.+|.+++.+...|+.
T Consensus 166 ~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t---W~~~~~--~~~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 166 RNLNRSPSGEYVAVSSRGSFYSTWEPGQTA---WEPHNR--TTS---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp EEEEECTTSCEEEEETTSSEEEEECTTCSS---CEEEEC--CSS---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEE
T ss_pred EEEEEcCCCcEEEEECCCcEEEEeCCCCCc---eeECCC--CCC---CccceeEECCCCCEEEEeCCceEEEecCCCCCe
Confidence 999999999888766443333333321111 111211 111 257889999999988888888888775333443
Q ss_pred eeeeecC---CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeE
Q 001367 969 LKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1045 (1091)
Q Consensus 969 ~~~~~~~---h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1045 (1091)
-.....+ +...+..+.+.+++..++++ .+|.| .+..+.|+.-..+......+. .++ .+.|.+ +..+
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~--~v~~~~--~~~~ 306 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY--KILFFS--PDQG 306 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC--EEEEEE--TTEE
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE--EEEEEC--CCce
Confidence 3322212 23458899999888877754 57777 456666644333221111111 244 344543 3567
Q ss_pred EEEecCCcEEEEec
Q 001367 1046 AVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1046 ~~g~~dg~v~~w~~ 1059 (1091)
++++.+|.|.-++-
T Consensus 307 ~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 307 FILGQKGILLRYVT 320 (327)
T ss_dssp EEECSTTEEEEECC
T ss_pred EEEcCCceEEEEcC
Confidence 78888997766553
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.0001 Score=79.57 Aligned_cols=263 Identities=10% Similarity=0.011 Sum_probs=147.3
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccc--e-ee---eeecCCCccEEEEE
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML--F-KT---ALVRDPGVSVNRVV 403 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~--~-~~---~~~~~h~~~V~~l~ 403 (1091)
+.+.-....+++|+++|+ ++.++..++.|..|+..+++... |........ . .. .........+..++
T Consensus 14 ~~g~~~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~ 86 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDIS 86 (322)
T ss_dssp EECSSSCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEE
T ss_pred cCCccCCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEE
Confidence 344334678899999997 55778888999999987664321 100000000 0 00 00000113578999
Q ss_pred ECC-CCCEEEEEECCCEEEEEEeeCCcccceeE-EEec-cccCeeEEEEcC-CCCceEEEEeeC----------------
Q 001367 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD---------------- 463 (1091)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~-~~~~-h~~~v~~~~~s~-d~~~~~l~s~~~---------------- 463 (1091)
+.+ +|+ |.++...+.|..+|..++.. +.+. ...+ .......+++.+ +|. +.++...
T Consensus 87 ~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 87 YNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTC
T ss_pred EcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccC
Confidence 998 554 55554555588888765432 2111 1111 113478899999 887 4444322
Q ss_pred -CCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEE-EEEecCCeEEEEecCCCC--ceeeecCCCCcEEEEEEcC
Q 001367 464 -DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA 539 (1091)
Q Consensus 464 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~ 539 (1091)
++.|..||..+++...... .......++++ +++..| ++-+..+.|..+++.... ....+....+ ...+++.+
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~ 238 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLK-ELHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA 238 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT
T ss_pred CCceEEEEeCCCCEEEEecc-CCccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC
Confidence 3678899987776432222 11234557774 466544 454667899999987532 1111111222 67899999
Q ss_pred CCCEEEEEecCC------CCceEEEEEecCCceeeEEEeccccc-ccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 540 NGRRLFSCGTSK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 540 d~~~l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
+|+..++..... ...+.|..+|.. ++.+..+...... ...+..+++ .++..+++....+.|.++++..
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 998766654210 013568888874 6766666543210 134566666 3444444444677888888754
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-05 Score=76.89 Aligned_cols=187 Identities=10% Similarity=0.039 Sum_probs=125.3
Q ss_pred CCCeeEEEecCCCCEEEEEe-C--CeEEEEEccCceeEEEecCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc
Q 001367 801 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 876 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~-d--g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~ 876 (1091)
..-...+.|++ +.+..+.+ + +.|+.+|+.+++.++.+..... .-..+++. ++++.+..-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34566889986 45555544 2 4899999999999988864433 22345554 45566666678999999999999
Q ss_pred eeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ec
Q 001367 877 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 955 (1091)
Q Consensus 877 ~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d 955 (1091)
.+.++.... .-..++ +|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.+. +|+..|.. .+
T Consensus 97 ~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~--~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL--DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc--ccceeeEEe-CCEEEEEECCC
Confidence 998887432 223444 567777666678899999999876544333322 11111 134455655 67666554 57
Q ss_pred CeEEEEEcCCcceeeeeecC------------CccCEEEEEEeeCCCEEEEEEc
Q 001367 956 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~~~~~~------------h~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
+.|.+.|.++|+.+..+..+ ...-...|+++|+++.|++.+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 79999999999988765422 1234578999998877776654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00013 Score=78.20 Aligned_cols=229 Identities=13% Similarity=0.107 Sum_probs=137.5
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCC-cEEEEeCCC
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK-TIKVWDAVT 474 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~-~i~iwd~~~ 474 (1091)
.....++|+++|+++++-..++.|..||..++. ... + ........+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 457789999999977776678899999877532 111 1 2234688999999998 444443 332 477778777
Q ss_pred CceeEEecC-CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee-e-------c--CCCCcEEEEEEcCCCCE
Q 001367 475 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 543 (1091)
Q Consensus 475 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~d~~~ 543 (1091)
++....... .......++. ..++..+++...++.|..+|......... . . ..-.....+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 765432221 1122233443 22344455555688888888765321111 0 0 111133445 788888
Q ss_pred EEEEecCCCCceEEEEEecCC-cee--eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1091)
|+.+.. ..+.|..+++.. ++. ...+.. ......+++.++|+.+++....+.|.+++.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 777653 356799999864 322 112211 1235668899999876666678899999975 55533222222
Q ss_pred CCCCCceEEEc---cCCCEEEEEECCC
Q 001367 621 GLPENPRICFN---KNGTLLAVIANEN 644 (1091)
Q Consensus 621 ~~~~v~~v~~s---~~~~~l~~~~~dg 644 (1091)
......+++|. |+++.|++.+..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 22356889998 8888777776643
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.38 E-value=0.0001 Score=78.98 Aligned_cols=240 Identities=11% Similarity=0.035 Sum_probs=139.7
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.+++..+..+ .....++|+|+|+ |+++-..++.|..||..++ .... +. ....+..++
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~~-----~~---------------~~~~p~gia 78 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQIH-----AT---------------VEGKVSGLA 78 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEEE-----EE---------------CSSEEEEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEEE-----Ee---------------CCCCceeEE
Confidence 3445555443 3788999999998 7677767899999997653 2211 11 224688999
Q ss_pred ECCCCCEEEEEECC-C-EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce-eEE
Q 001367 404 WSPDGSLLGVAYSK-H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYS 480 (1091)
Q Consensus 404 ~spdg~~las~~~d-~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~ 480 (1091)
+.++|+++++.... + .|..++..+++. .....+. .......++..+++. .+++...++.|.++|..+++. +..
T Consensus 79 ~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~~ 154 (306)
T 2p4o_A 79 FTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWL 154 (306)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEEE
Confidence 99999976665443 2 466677677653 2221221 122234555555554 455555688999999776531 211
Q ss_pred ec---------CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc---eeeecCCCCcEEEEEEcCCCCEEEEEe
Q 001367 481 FE---------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1091)
Q Consensus 481 ~~---------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~ 548 (1091)
.. ..-...+.+ +++ .+.++++-...+.|..++++.... ...+. .......++++++|+..++..
T Consensus 155 ~~~~~~~~~~~~~~~~pngi--s~d-g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 155 EHPMLARSNSESVFPAANGL--KRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATH 230 (306)
T ss_dssp ECGGGSCSSTTCCSCSEEEE--EEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECB
T ss_pred ECCccccccccCCCCcCCCc--CcC-CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeC
Confidence 11 111123334 322 224556666778999999875211 11111 012345689999998766554
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEc---CCCCEEEEEeCCC
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDDH 600 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~~l~~~s~dg 600 (1091)
. .+.|.++|.. ++......... ......+++|. |+++.|++++..+
T Consensus 231 ~----~~~V~~~~~~-G~~~~~~~~~~-~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 231 I----YNSVVRIAPD-RSTTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp T----TCCEEEECTT-CCEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred C----CCeEEEECCC-CCEEEEeeccc-ccCCceEEEEecccCCCCEEEEECCCC
Confidence 3 4559999975 55432211111 12568899998 8888888766543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.3e-05 Score=94.05 Aligned_cols=278 Identities=10% Similarity=0.039 Sum_probs=155.5
Q ss_pred EEEEcC-CCceEEEEEcCCC-----------cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 339 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 339 ~v~fsp-dg~~llasg~~dg-----------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
++++.| +|+ +++.|+.++ .+.+||..+++...... ....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCCC
Confidence 567777 786 667776432 57889988876443211 0122333445678889
Q ss_pred CCCEEEEEEC-CCEEEEEEeeCCcccceeEEEeccccC-eeEEEEcCCCCceEEEEee-CC-----CcEEEEeCCCCcee
Q 001367 407 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRT 478 (1091)
Q Consensus 407 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~d~~~~~l~s~~-~d-----~~i~iwd~~~~~~~ 478 (1091)
+|+.+++|+. +..+.+||..+++-... ..+ +..+ -.+++..++|+ +++.|+ .+ ..+.+||..+++-.
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEEC-CCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeEC-CCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 9999999984 45899999987642211 111 1111 23456667888 777777 34 57999999877643
Q ss_pred EEecCCCcceE----EEeecccCCceEEEEEecCC---------eEEEEecCCCCceeeecCC---------CCcEEEEE
Q 001367 479 YSFEGHGAPVY----SLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRMA 536 (1091)
Q Consensus 479 ~~~~~~~~~v~----~~~~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~---------~~~i~~~~ 536 (1091)
..-.....+.. ...+ ..++..++.++.+| .+..||..+..-....... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 32000000000 0011 12334555555544 4677877765432221111 11223444
Q ss_pred EcC-CCCEEEEEecCCC----Cce---EEEEEecCCceeeEEE--ecccccccceEEEEEcCCCCEEEEEeCC-------
Q 001367 537 YSA-NGRRLFSCGTSKE----GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------- 599 (1091)
Q Consensus 537 ~s~-d~~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~s~d------- 599 (1091)
+.. +++.+++++.... ... .+.+||..+....... .... ...-.+++..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 443 6666676664211 011 6888998877654433 1111 1223445667899999988754
Q ss_pred ----CeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 600 ----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 600 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
..+.+||..+.+....-.............+.++++.++.|+.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988765442222211112334566789999999885
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.36 E-value=5.3e-05 Score=90.87 Aligned_cols=121 Identities=12% Similarity=0.181 Sum_probs=76.5
Q ss_pred EEEEcC-CCCEEEEEecCCC-------CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEE
Q 001367 534 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI 604 (1091)
Q Consensus 534 ~~~~s~-d~~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~i 604 (1091)
..++.+ +++.++.++...+ +...+.+||..+++..........+.....++++..+++.++.|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456667 7888888765432 123689999988764332221111112334567788899888887 4568999
Q ss_pred EECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE-CC-----CeEEEEECCCCC
Q 001367 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPESN 655 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iwd~~~~~ 655 (1091)
||..+.+....-...... .-.+++..+++++++.|+ .+ ..+.+||..+..
T Consensus 270 yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 999887665443322221 123566677899999988 34 468888887653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.0011 Score=72.12 Aligned_cols=249 Identities=10% Similarity=-0.017 Sum_probs=152.6
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 413 (1091)
.+..+|.+..+++ .|+++- ...|+..++........ +. ....+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~--~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN--RIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC--BSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCc-eeEeec--ccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEE
Confidence 3456787777755 354442 35688888765433211 22 2345889999987666665
Q ss_pred EE-CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEe
Q 001367 414 AY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1091)
Q Consensus 414 ~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 492 (1091)
+. ..+.|..+++.++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 54 56789889887754221 12222344678999886664 455556678899999775443333333344567888
Q ss_pred ecccCCceEEEEEecC-CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEE
Q 001367 493 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1091)
+.+. ++.++++-... +.|...+++...........-.....++++|++..|+.+-. +.+.|..+|+........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8653 34555555555 78888887765444333333445789999998888777643 2567999998754333333
Q ss_pred ecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001367 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 572 ~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1091)
.... .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus 242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 456677773 34444444567788888876776665554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.2e-05 Score=74.73 Aligned_cols=185 Identities=9% Similarity=0.089 Sum_probs=126.0
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
.-...+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++. +.+..-.++.+.+||..+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCc
Confidence 445778887 4666677778889999999999877654 333 2223223335555 34445568899999999999
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC--C---cEEEEEEcCCCCEEEEEecCC
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--L---GCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~---~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
.+.++.... .-..++. ++..|+.+..++.|.++|..+.+....+.... . .+..+.|. +|+ |.+...
T Consensus 128 ~~~ti~~~~-eGwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw-- 198 (268)
T 3nok_A 128 RERTTRYSG-EGWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW-- 198 (268)
T ss_dssp EEEEEECSS-CCCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET--
T ss_pred EEEEEeCCC-ceeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC--
Confidence 999987432 2244543 44566666678999999999888776554422 2 34566666 675 444432
Q ss_pred CCceEEEEEecCCceeeEEEecccc----------cccceEEEEEcCCCCEEEEEeC
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQL----------QHNSVSVVHFDTAKDQILAAGD 598 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~v~~~~~~~~l~~~s~ 598 (1091)
....|.+.|..+++.+..+..... .....+.++++|+++.|++.+.
T Consensus 199 -~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 -HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 245799999999999888775310 1246789999998887777664
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0012 Score=71.68 Aligned_cols=248 Identities=10% Similarity=-0.034 Sum_probs=152.2
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
..+|.+..++ .+|+.+. ...|+..++.+... . .+......+..++|.+.+.. ++++-...+.|..+++..+..
T Consensus 35 ~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~-~---~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEY-T---LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp SSCEEESSSC-CEEEEEC-BSCEEEECTTSCCE-E---EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred CCcccccccC-ceeEeec-ccceEEEeCCCCee-E---EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence 4456666663 3444443 34477777765432 1 12223345789999987664 445555678899999876654
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
...+.........+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+..... ..+.|
T Consensus 108 ~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~--~~~~I 184 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRI 184 (349)
T ss_dssp EEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS--SSCEE
T ss_pred eEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC--CCCEE
Confidence 4433333334566777543 44566677777899999987665544444444567899999977777665431 12678
Q ss_pred EEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCE
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1091)
...++............ ......++++|++..|+.+. ..+.|..++++.......+... ......+++ .++.+
T Consensus 185 ~r~~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~l 258 (349)
T 3v64_C 185 EASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSL 258 (349)
T ss_dssp EEEETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEE
T ss_pred EEEeCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEE
Confidence 88887654332222211 24678999999887777765 5678999998764433333322 223467777 34555
Q ss_pred EEEEECCCeEEEEECCCCCeecccc
Q 001367 637 LAVIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
.++-...+.|..++..++.....+.
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEecCCCCeEEEEEccCCCccEEec
Confidence 5555567888888866665555444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00034 Score=70.97 Aligned_cols=207 Identities=7% Similarity=-0.006 Sum_probs=133.5
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+.|.|-.+++..++|+|++..|.|+...++.|...|.. |+.+.... +.+ ....-.|++.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~ 80 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD 80 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence 45667767999999999887788888889999999988 77665421 222 256788899999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEe------ccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeC-CCCcee
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDA-VTGSRT 478 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~-~~~~~~ 478 (1091)
+.++++.-.++.+.++++.....+....... ........++|.|+++. |+++.... .|..|+- ..+..+
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCce
Confidence 9877776667889999987655322111221 12345689999999985 33344333 4445541 111122
Q ss_pred EEec-------CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC---------CcEEEEEEcCCCC
Q 001367 479 YSFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGR 542 (1091)
Q Consensus 479 ~~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~d~~ 542 (1091)
..+. .+...+.+++++|. .+++++....++.+.++|.+.. ....+.... .....++|.++|+
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred eeecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 2221 12345678888875 4578888888889999987644 333332221 2567999999998
Q ss_pred EEEEEecCCCCceEEEEEec
Q 001367 543 RLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~ 562 (1091)
..+++ . .+.++.+..
T Consensus 237 lyIvs-E----~n~~y~f~~ 251 (255)
T 3qqz_A 237 IYIVS-E----PNRFYRFTP 251 (255)
T ss_dssp EEEEE-T----TTEEEEEEC
T ss_pred EEEEc-C----CceEEEEEe
Confidence 65553 2 334665543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00083 Score=74.20 Aligned_cols=248 Identities=11% Similarity=-0.006 Sum_probs=153.5
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE-
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 414 (1091)
.-.|.+..+.+ +|+++ ....|+..++.++..... . .....+..++|.+.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~-~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------L-NNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------E-CSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------e-cCCCccEEEEEecCCCeEEEEe
Confidence 45677776754 35444 236788888876543321 2 233468899999866666555
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 456789999887654211 12222334577899886664 45555667789999976554333333333556788886
Q ss_pred ccCCceEEEEEecC-CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEec
Q 001367 495 AKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1091)
Q Consensus 495 ~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1091)
+. ++.++++-... +.|...+++...........-.....++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 54 34455555455 77888888765554444444445789999998887777643 256799999875443333332
Q ss_pred ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 574 ~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
.. .....+++ ..+..+++-...+.|..++..+|+....+..
T Consensus 287 ~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CC---CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 22 45667777 3344444555678888888777776666653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0016 Score=69.74 Aligned_cols=238 Identities=9% Similarity=-0.041 Sum_probs=143.6
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC---CceeE-EecCCC
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTY-SFEGHG 485 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~-~~~~~~ 485 (1091)
+|+.+.. ..|+..|+.+++... +.........++|.+++.. ++++-...+.|..+++.+ +.... .+...-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 3444433 348888887764322 2223456789999987664 455556678999999876 12222 232222
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ..+.|...++...
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCCC
Confidence 34567777543 34566666778899999987654443343344567899999977776665431 1357888887543
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
. ...+.... ......+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+
T Consensus 154 ~-~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 154 D-IYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp C-EEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred C-eEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 3 33332211 25678999999888877765 5678999998754333333322222234577775 355555555678
Q ss_pred eEEEEECCCCCeeccc
Q 001367 645 RIKILETPESNSVDAA 660 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~ 660 (1091)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8999988766554444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00073 Score=74.65 Aligned_cols=257 Identities=10% Similarity=-0.046 Sum_probs=156.3
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
+|.+..+ ..+|+.+. ...|+..++.++... .+......+..++|.+.+.. ++++-...+.|..+++..+....
T Consensus 80 ~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~----~~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 80 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp CEEECSS-CCEEEEEC-BSCEEEECTTSCCCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred eECCccc-cceeEeec-CccceeeccCCCcEE----EEecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence 3455555 33444443 345888887765422 22233445789999987664 45555667889999987665443
Q ss_pred EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
.+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ....|+.
T Consensus 153 ~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r 229 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEA 229 (386)
T ss_dssp EECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEE
T ss_pred EEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEE
Confidence 33333334456777543 34566666777889998887655444444444567899999988777765431 1367888
Q ss_pred EecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
+++............ ......++++|++..|+.+. ..+.|..++++.......+... ......+++ ..+.+++
T Consensus 230 ~~~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 230 SSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EETTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred EeCCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEE
Confidence 887654333332222 24578999998877777654 5678999998754433333322 223467777 3455555
Q ss_pred EEECCCeEEEEECCCCCeecccccccccceeeee
Q 001367 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
+-...+.|..++..++.....+.........+++
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 5556788988887666655555433333333333
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00026 Score=70.57 Aligned_cols=188 Identities=13% Similarity=0.098 Sum_probs=124.0
Q ss_pred CCccEEEEEECCCCCEEEEEECC--CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
...-...+.|++ +.+..+.+.+ ..|+.+|+.+|+.++.. .+..+ ........+++. +.+..-.++.+.++|.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~---~fgeGi~~~~~~-ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPPP---YFGAGIVAWRDR-LIQLTWRNHEGFVYDL 92 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCTT---CCEEEEEEETTE-EEEEESSSSEEEEEET
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCCC---cceeEEEEeCCE-EEEEEeeCCEEEEEEC
Confidence 345677899986 5555665554 48999999999866533 22222 222223334554 3444566889999999
Q ss_pred CCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC-----CcEEEEEEcCCCCEEEEE
Q 001367 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~d~~~l~~~ 547 (1091)
.+.+.+.++..... -..++. ++..|+.+..++.|.++|..+.+....+.... ..+..+.+. +|+.. +.
T Consensus 93 ~tl~~~~ti~~~~~-Gwglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly-an 165 (243)
T 3mbr_X 93 ATLTPRARFRYPGE-GWALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL-AN 165 (243)
T ss_dssp TTTEEEEEEECSSC-CCEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE-EE
T ss_pred CcCcEEEEEeCCCC-ceEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE-EE
Confidence 99999999864332 244543 34455555668899999999888776654422 234455554 56544 43
Q ss_pred ecCCCCceEEEEEecCCceeeEEEeccc----------ccccceEEEEEcCCCCEEEEEeC
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGD 598 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~v~~~~~~~~l~~~s~ 598 (1091)
.. ....|.+.|..+++.+..+.... ......+.++++|+++.|++.+.
T Consensus 166 vw---~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VW---LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ET---TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EC---CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 32 14469999999999988877431 11246789999999888888764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00019 Score=87.33 Aligned_cols=246 Identities=6% Similarity=-0.044 Sum_probs=133.5
Q ss_pred CCCc-cEEEEEEC-CCCCEEEEEEC-C----CEEEEEEeeCC-cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC-
Q 001367 394 DPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD- 464 (1091)
Q Consensus 394 ~h~~-~V~~l~~s-pdg~~las~~~-d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d- 464 (1091)
+|.- .+...+|| |||++||.+.. + .+|+++|+.+| +.+.. .+. .....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEECC
Confidence 4553 78899999 99999997643 2 35999999998 63321 111 12457899999985 4433333
Q ss_pred ----CcEEEEeCCCCcee--EEecC-CCcceEEEeecccCCceEEEEEec---CCeEEEEecCCCC-ce--eee-cCCCC
Q 001367 465 ----KTIKVWDAVTGSRT--YSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG-AR--VDY-DAPGL 530 (1091)
Q Consensus 465 ----~~i~iwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~-~~--~~~-~~~~~ 530 (1091)
..|.++++.++... ..+.. .......+.+ ++||++|+..+. ...|.++|+.+.. .. ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 36888898876422 22222 2233445556 567777776553 3358888887753 22 222 22333
Q ss_pred cEEEEEEcCCCCEEEEEecCC-CCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCCEE-EEEeCCCe--EEEE
Q 001367 531 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKIW 605 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~s~dg~--i~iw 605 (1091)
...++.|+ +|..|+..+... .+...|+.+++.++ +....+..+. ....+..+.+. ++.+ ++...++. |+++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 44444443 366666555432 34667888988753 3222022222 01234555554 4455 44666775 5555
Q ss_pred EC-------CCCeeEEEEeCCCCCCCCceEEE------ccCCC-EEEEEECC---CeEEEEECCCCC
Q 001367 606 DM-------NKVQLLTTIDAGGGLPENPRICF------NKNGT-LLAVIANE---NRIKILETPESN 655 (1091)
Q Consensus 606 d~-------~~~~~~~~~~~~~~~~~v~~v~~------s~~~~-~l~~~~~d---g~i~iwd~~~~~ 655 (1091)
++ .+++....+..... ...+.+ ++++. ++++.+.. ..++.+|+.+++
T Consensus 397 dl~~~~~~~~~g~~~~~l~l~~~---~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 397 MADSQDGVFKAGTGLREVVMEEP---IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp ECCTTTSCCCTTTCCEECCCCCS---SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ecccccccccCCccceEECCCCc---eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 65 34431334433222 223344 34554 33443332 457777776553
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0029 Score=67.65 Aligned_cols=232 Identities=9% Similarity=-0.066 Sum_probs=138.3
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE-CCCEEEEEEeeCC---cccc
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGG---SDAR 432 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~---~~~~ 432 (1091)
..|+..|+.+++.... + .....+..++|++++..|..+. ..+.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6788899887654421 1 1335678999999776666554 5678999998762 2111
Q ss_pred eeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC-CeE
Q 001367 433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI 511 (1091)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i 511 (1091)
. .+.........+++.+.+.. +.++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222345678999876654 4555566789999997654333333323345678888543 33444444333 678
Q ss_pred EEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCC
Q 001367 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1091)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 591 (1091)
...+++...........-.....+++++++..|+.+-. ....|..+|...... +.+............+++. .+.
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCE
Confidence 88887654433333333446789999998888877643 256799999875332 3332111012345667774 344
Q ss_pred EEEEEeCCCeEEEEECCCCeeEEEEe
Q 001367 592 QILAAGDDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1091)
.+++-...+.|..++..+++.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 44445567788888887776655553
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00043 Score=77.61 Aligned_cols=246 Identities=12% Similarity=0.063 Sum_probs=144.5
Q ss_pred CeeEEEecCC--CCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEeccCc
Q 001367 803 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS 875 (1091)
Q Consensus 803 ~v~~l~~s~d--g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d---g-~i~iwd~~~~ 875 (1091)
....++++|+ +..|..+. .+.|+.+|..+++..... ........+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4578999985 44455554 488999999877765443 3555789999999 77754443311 1 2333443322
Q ss_pred cee-eeeccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE
Q 001367 876 EVI-SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 953 (1091)
Q Consensus 876 ~~~-~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~ 953 (1091)
... ..+. .......++++| +|.+.++-..++.|+.++..++.... ...... . . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~-~-~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMD-T-K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECS-C-C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccC-C-C---CCcccEEEeCCCCEEEEE
Confidence 110 1122 234456789999 77777666677889999988665311 111111 1 1 123479999999966654
Q ss_pred --ecCeEEEEEcC--Cccee--eeeec--C------------CccCEEEEEE---------eeCCCEEEEEEcCCcEEEE
Q 001367 954 --HETHLAIYEAE--ELTCL--KQWFP--I------------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 1004 (1091)
Q Consensus 954 --~d~~i~vwd~~--~~~~~--~~~~~--~------------h~~~v~~v~f---------s~dg~~l~t~~~dg~v~iw 1004 (1091)
..+.|+.++.. ++... ..+.. + .-.....+++ .++|.++++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45689998865 23211 11110 0 0124677999 6777777766667889999
Q ss_pred eCCCCceEEEeeccc-----c----cCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 1005 EASNLEVQCRILSTA-----Y----LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1005 d~~~~~~~~~~~~~~-----~----~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
+. +|.......... + ++.. ..--.|..++++|.++.++++=..++.|+.+++.
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~--~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQ--ALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTT--CBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccc--cEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 564432222111 0 0000 0112367788995457777766677888888774
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0013 Score=66.64 Aligned_cols=217 Identities=12% Similarity=0.126 Sum_probs=130.7
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecc-ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 837 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 837 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
.+.+-...+..++++|+++.+.++...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4455556899999999666677778889999999998 887776632 22457889999999877776677889999987
Q ss_pred CCce-eeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEec-CeEEEEEcC---Ccceeeeee------cCCccCEEEEE
Q 001367 916 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAE---ELTCLKQWF------PISSVPISQAT 984 (1091)
Q Consensus 916 ~~~~-~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d-~~i~vwd~~---~~~~~~~~~------~~h~~~v~~v~ 984 (1091)
.... ..........+..........++|+|+++.|.++.+ ....+|.+. ....+.... ..+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6442 111122211111111235789999999977776433 333444443 111111110 11234578899
Q ss_pred EeeCC-CEEEEEEcCCcEEEEeCCCCceEEEeeccc-ccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 985 FSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 985 fs~dg-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
|.|.. ++++.......+.++|.. |+.+..+.... ..... ...-.+=-++++| +|+ |..+++-+.+++++-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~--~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLS--HNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCS--SCCCSEEEEEECT-TCC-EEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcc--cccCCCCeeEECC-CCC-EEEEcCCceEEEEEe
Confidence 99954 556666667789999976 44554444221 10100 0111234578999 466 444577775555543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00052 Score=76.99 Aligned_cols=247 Identities=12% Similarity=0.042 Sum_probs=143.4
Q ss_pred CCeeEEEecC-CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC-CC----eEEEEeccC
Q 001367 802 EAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARS 874 (1091)
Q Consensus 802 ~~v~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~-dg----~i~iwd~~~ 874 (1091)
.....++++| ++..|.++. .+.|+.+|+.++...... ........++|++ ++++|+++.. ++ .+.+++. .
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-C
Confidence 3557899998 455566665 478999998876654433 3556788999999 7775555543 22 3444443 3
Q ss_pred ccee--eeeccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEE
Q 001367 875 SEVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 951 (1091)
Q Consensus 875 ~~~~--~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la 951 (1091)
+... ..+. .......++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|.
T Consensus 214 g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 214 SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAY 285 (430)
T ss_dssp GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEE
T ss_pred Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEE
Confidence 3322 2232 223467789999 77777776678889999998754321 1111111 1367899999999666
Q ss_pred EE--ecCeEEEEEcCC--cce--eeeeec--C------------CccCEE-EEEEe--------eCCCEEEEEEcCCcEE
Q 001367 952 LV--HETHLAIYEAEE--LTC--LKQWFP--I------------SSVPIS-QATFS--------CDCRMVFTSFVDGTLS 1002 (1091)
Q Consensus 952 ~~--~d~~i~vwd~~~--~~~--~~~~~~--~------------h~~~v~-~v~fs--------~dg~~l~t~~~dg~v~ 1002 (1091)
++ ..+.|..++... ++. +..+.. + .-.... .++.. ++|.++++-...+.|+
T Consensus 286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 54 567898887653 221 111110 0 011223 45543 3456666555667899
Q ss_pred EEeCCCCceEEEeeccc--ccC--CC--C-cccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 1003 IHEASNLEVQCRILSTA--YLR--PT--T-SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1003 iwd~~~~~~~~~~~~~~--~~~--~~--~-~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
.++ ..|.......... ... .+ . ...--.|..++++|+++.++++-..++.|+.+++.
T Consensus 366 ~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 888 4565443332100 000 00 0 00112577889998546666666667788888763
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0026 Score=70.43 Aligned_cols=249 Identities=9% Similarity=-0.037 Sum_probs=152.7
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC----ceeEEecCCC
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~ 485 (1091)
+|+.+. ...|+..++.+.... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCccee----EeccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 444443 456888888765422 22334557889999987664 4455556788999997652 2223333334
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
.....+++.+. .+.+.++-...+.|.+.+++.................+++.|.+.+|+..-.. ....|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 45667787543 34566677778899999887665555554444567899999977777665321 1356888887654
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
......... ......+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 433333322 25678999999888887765 5678999998765544444432222334566663 344555555668
Q ss_pred eEEEEECCCCCeecccccccccceeee
Q 001367 645 RIKILETPESNSVDAAGVLSDNLRKLS 671 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~ 671 (1091)
.|..++..++.....+.........++
T Consensus 312 ~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp SEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred eEEEEEcCCCCceEEEecCCCCCceEE
Confidence 898888777766555543333333333
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.04 Score=67.13 Aligned_cols=537 Identities=10% Similarity=0.044 Sum_probs=283.4
Q ss_pred CccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
...|.++.-..+|. |-.|..+| +..||-..-+..... -......|.++.-..+|. |..++.+| +..||..+.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTY--GENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCT--TSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEcc--CCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCCC
Confidence 46799999888885 44556777 666663211100000 001234688888777764 55555555 789998776
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee----ecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+...........|.++.. .++ .|..++.+ -+..+|..+...... .......|.++....+|...+.. .
T Consensus 93 ~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~-- 164 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT-Y-- 164 (758)
T ss_dssp EECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE-T--
T ss_pred EEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe-C--
Confidence 433211112234665543 244 45555555 577788765443221 01223468888888888766643 2
Q ss_pred CCceEEEEEecCCceeeEEEeccc--ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
. -+..++..+++......... .....|.++...+++..|..|+. +.+..+|..+++......... ..|.++.
T Consensus 165 --~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~--~~i~~i~ 238 (758)
T 3ott_A 165 --N-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHN--NSIKSLA 238 (758)
T ss_dssp --T-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEE--EEEEEEE
T ss_pred --C-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCC--CeEEEEE
Confidence 1 27788877765432211100 01234788888777776666664 468889988765433211111 2367777
Q ss_pred EccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccc
Q 001367 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKS 709 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i 709 (1091)
...+|.+. +|+. +-+.+++..+.... .+..... +
T Consensus 239 ~d~~g~lW-igT~-~Gl~~~~~~~~~~~-~~~~~~~------------------------------~------------- 272 (758)
T 3ott_A 239 LDGNGDLL-AGTD-NGLYVYHNDTTPLQ-HIIHDSR------------------------------N------------- 272 (758)
T ss_dssp ECTTCCEE-EEET-TEEEEECCTTSCCE-EECCCTT------------------------------C-------------
T ss_pred EcCCCCEE-EEeC-CceeEEecCCCcEE-EEEcCCC------------------------------C-------------
Confidence 77777644 4554 45777776543211 1000000 0
Q ss_pred ccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCc
Q 001367 710 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 789 (1091)
Q Consensus 710 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1091)
+.......|.++....+|..-+ ++..| +.++.... . .+.+..
T Consensus 273 ------------------~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~-~------------~~~~~~----- 314 (758)
T 3ott_A 273 ------------------IQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS-A------------LQFIPI----- 314 (758)
T ss_dssp ------------------TTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC--------------CEEEEH-----
T ss_pred ------------------cCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC-c------------eeEEec-----
Confidence 0000234577777777777444 43445 33322110 0 000000
Q ss_pred eeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCce--eEEEec-------CCCCCeEEEEEcCCCCcEEEE
Q 001367 790 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK--TILTIM-------PPSPTATSLAFNPHDNNVIAI 860 (1091)
Q Consensus 790 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~--~~~~~~-------~~~~~i~~l~~s~~~~~~la~ 860 (1091)
...........|.++....+|.+.+.. .+.+..++..+++ ....+. .....|.++.-.. ++++.+
T Consensus 315 ---~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWi- 388 (758)
T 3ott_A 315 ---SQITGTGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK-EQQLWI- 388 (758)
T ss_dssp ---HHHSCSCCCCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT-TSCEEE-
T ss_pred ---ccCCCCCCCceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECC-CCCEEE-
Confidence 000000124568889888888877765 4456666655432 111221 1224588888877 565544
Q ss_pred EeCCCeEEEEeccCcceeeee--cc----ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC------ceeeeeeeecc
Q 001367 861 GMDDSTILIYNARSSEVISKL--EG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW------GIQTCRSLQTP 928 (1091)
Q Consensus 861 g~~dg~i~iwd~~~~~~~~~l--~~----h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~------~~~~~~~~~~~ 928 (1091)
|+ ++-+..|+..+++...-. .. ....|.++...++|++.+ |+..+-|.++|..+. ...........
T Consensus 389 gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (758)
T 3ott_A 389 AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVH 466 (758)
T ss_dssp EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGG
T ss_pred Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceecccccccc
Confidence 55 456999998877543211 11 234588888888876655 565555888886531 10000011111
Q ss_pred CCCcCCCCCceEEEEcCCCCEEE-EEecCeEEEEEcCCcceeeeeecC--CccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 929 DGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 929 ~~~~~~~~~i~~l~fs~dg~~la-~~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
.+... ..|.++...++|.+.+ .+..+.|..+|..+++...-.... ....+.++....+|.+.+. +..| +..++
T Consensus 467 ~~l~~--~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~ 542 (758)
T 3ott_A 467 NGLSG--MFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRIN 542 (758)
T ss_dssp GTCSC--SCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEEC
T ss_pred ccccc--ceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEe
Confidence 12111 2588999999999876 345567888998876544321111 1356888888888887664 4544 88888
Q ss_pred CCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 1006 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
..++.... +. ...++ ...|..+ ..+ +|. |-.++..| +..++....
T Consensus 543 ~~~~~~~~-~~-~~gl~----~~~i~~i--~~~--~g~-lWi~t~~G-l~~~~~~~~ 587 (758)
T 3ott_A 543 PKDESQQS-IS-FGSFS----NNEILSM--TCV--KNS-IWVSTTNG-LWIIDRKTM 587 (758)
T ss_dssp C--CCCCB-CC-CCC-------CCEEEE--EEE--TTE-EEEEESSC-EEEEETTTC
T ss_pred cCCCceEE-ec-ccCCC----ccceEEE--EEC--CCC-EEEECCCC-eEEEcCCCc
Confidence 77664331 11 11122 2234433 222 344 44444444 677777543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.005 Score=66.17 Aligned_cols=281 Identities=12% Similarity=0.026 Sum_probs=146.5
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..+.+|.|.+++. ++++|. .|.| +.....|+.=..... ........+.+++|++ +..++ +
T Consensus 36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGWI-V 95 (327)
T ss_dssp SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEEE-E
T ss_pred CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEEE-E
Confidence 3799999988887 556654 4644 333333431110000 0112345788999986 44444 4
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-EEecCCCcceEEEee
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCP 493 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~ 493 (1091)
+..+.|.. ....|+..........+.+.+..+.+.+++. +++.+ .++.|..- ...|+.- .....+...+..+++
T Consensus 96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 45664332 3333443332111112334577888877776 45444 45654332 1233322 222344556788877
Q ss_pred cccCCceEEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEe
Q 001367 494 HAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
.+ ++.+++.+...+..+-+|-. +..-. ........+..+.+.++++.++.+. .+.+++.+...++....+.
T Consensus 171 ~~--~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~ 242 (327)
T 2xbg_A 171 SP--SGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELL 242 (327)
T ss_dssp CT--TSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCB
T ss_pred cC--CCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEecc
Confidence 54 55566655444434434321 11111 1123345678899999988766542 3446665433344333332
Q ss_pred cc-cccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC-CCCCCceEEEccCCCEEEEEECCCeEEEEE
Q 001367 573 GL-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 573 ~~-~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
.. ......+..+.+.+++..+++ +.+|.+ .+..+.|+.-..+.... ....+..+.|.+++. +++++.+|.|.-++
T Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp CTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 21 001235888999887665554 456766 45556665555444221 113568888876554 66667788877665
Q ss_pred C
Q 001367 651 T 651 (1091)
Q Consensus 651 ~ 651 (1091)
-
T Consensus 320 ~ 320 (327)
T 2xbg_A 320 T 320 (327)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0049 Score=68.26 Aligned_cols=206 Identities=8% Similarity=-0.001 Sum_probs=132.6
Q ss_pred CCCeeEEEecCCCCEEEEEe--CCeEEEEEccCc----eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC
Q 001367 801 QEAVPCFALSKNDAYLFSAS--GGVISLYIVMTF----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~ 874 (1091)
...+..++|++.+..|..++ .+.|..+++... .....+.........+++.+.++++.++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999999887777776 588998988752 223333334456788999874566666666778999999886
Q ss_pred cceeeeeccccCCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 875 SEVISKLEGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 875 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
......+.........|++.|.+.+|..+.. .+.|...+++...... .+. ... .....+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~---~~l---~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT---ENI---QWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEE---CCC---CceEEEEEEeCCCEEEE
Confidence 5443334334456889999997666655442 3678888887643211 111 111 14679999998888877
Q ss_pred E--ecCeEEEEEcCCcceeeeeecC--CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 953 V--HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 953 ~--~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
+ ..+.|..+|+... ....+... .......+++ ..+..+++-...+.|..++..+|+....+.
T Consensus 263 aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 4568999998643 33333322 2344567776 334455565667889999988887665544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.93 E-value=0.011 Score=63.06 Aligned_cols=233 Identities=8% Similarity=-0.032 Sum_probs=142.6
Q ss_pred CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-EEecCCCcceEEEeecc
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~ 495 (1091)
...|+..++.+..... ...+. ....+..++|.+.+.. ++++-...+.|..+++..+... ..+...-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENA-TIVVG-GLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCC-EEEEE-EEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEE-EEEec-CCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 4568888887753111 11122 2335678999986664 4555566788999998766422 12222223455677754
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
. ++.+.++-...+.|.+++++.................+++.|.+..|+..... ....|...++............
T Consensus 89 ~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~~~~~~~~~- 164 (318)
T 3sov_A 89 L-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE- 164 (318)
T ss_dssp T-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCSCEEEECSS-
T ss_pred C-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCCeEEEEECC-
Confidence 3 44566676778899999987655444444444567899999977776665421 2456888887643322222221
Q ss_pred ccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 576 LQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
-.....+++++++..|+.+. ..+.|..+|++.......... .......+++.. +.++++-...+.|..++..++
T Consensus 165 --l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 165 --IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp --CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred --CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 24678999999877777764 568899999875443333321 122346677753 345555556788999998777
Q ss_pred Ceecccc
Q 001367 655 NSVDAAG 661 (1091)
Q Consensus 655 ~~~~~~~ 661 (1091)
+....+.
T Consensus 240 ~~~~~i~ 246 (318)
T 3sov_A 240 EGLREIH 246 (318)
T ss_dssp CSCEEEE
T ss_pred CceEEEe
Confidence 6554443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0054 Score=68.64 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=96.1
Q ss_pred CcEEEEEcC-CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 336 ~V~~v~fsp-dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
....++++| ++..|.++-.. +.|..+|..++.... +.........++|+++|++|.++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyva 196 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMIIT 196 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEEE
Confidence 678999998 34445454433 889999988765432 22244678899999999966666
Q ss_pred ECC----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcC-CCCceEEEEeeCCCcEEEEeCCCCceeEEec-CCCcce
Q 001367 415 YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPV 488 (1091)
Q Consensus 415 ~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v 488 (1091)
... ....+|-...+.... ...+. .......++++| +|. ++++-..++.|..++..++....... +.....
T Consensus 197 d~~~~~~~~~v~~~~~~g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P 272 (430)
T 3tc9_A 197 NDQNNNDRPNNYILTRESGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWE 272 (430)
T ss_dssp ECCSCTTSEEEEEEEGGGTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSSCC
T ss_pred eCCCCcccceEEEEeCCCceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCCcc
Confidence 542 222333333333221 11222 123467889999 565 56666677899999988765422221 122345
Q ss_pred EEEeecccCCce-EEEEEecCCeEEEEecCC
Q 001367 489 YSLCPHAKENIH-FIFSISVDGKIKAWLYDS 518 (1091)
Q Consensus 489 ~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 518 (1091)
..+++++ ++. ++++-...+.|..++.+.
T Consensus 273 ~gia~~p--dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 273 FHIQFHP--SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred eeEEEcC--CCCEEEEEECCCCEEEEEeCCc
Confidence 6788854 556 555666778899988764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.90 E-value=0.013 Score=62.46 Aligned_cols=234 Identities=11% Similarity=-0.012 Sum_probs=140.5
Q ss_pred CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE-ECCCEEEEEEeeCCccccee
Q 001367 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ 434 (1091)
Q Consensus 356 dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~ 434 (1091)
...|+..++.+........ +. ....+.+++|.+.+..|..+ ...+.|..+++.++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-----------------~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-----------------VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-----------------EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEEE-----------------ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 3678999987764221100 11 12356789999965555554 4567899999877632221
Q ss_pred EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEe-cCCeEEE
Q 001367 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKA 513 (1091)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~i 513 (1091)
.+.........+++.+.+.. ++++-...+.|.++++........+.........+++.+. .+.++++-. ..+.|..
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~-~g~ly~td~~~~~~I~r 149 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIER 149 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG-GTEEEEEECSSSCEEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCCEEEE
Confidence 12222345678899876554 4555566789999997654333333334445678888654 233444432 3577888
Q ss_pred EecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEE
Q 001367 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 593 (1091)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 593 (1091)
.+++...........-.....+++++++..|+.+-. ....|..+|+..........+.. .....+++.. +..+
T Consensus 150 ~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~ly 222 (318)
T 3sov_A 150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DILY 222 (318)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEEE
T ss_pred EEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEEE
Confidence 887654443333333445689999998888877643 35679999986543322232222 4556677643 3344
Q ss_pred EEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 594 LAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
++-...+.|..++..+|+....+..
T Consensus 223 wtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEecCCCeEEEEECCCCCceEEEeC
Confidence 4455678899999887776666543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0037 Score=69.94 Aligned_cols=238 Identities=15% Similarity=0.097 Sum_probs=135.4
Q ss_pred CcEEEEEcCC---CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 336 SPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 336 ~V~~v~fspd---g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
....++|+|+ |. |.++-.. +.|+.+|..+++... +.+.......++|+++|++++
T Consensus 140 ~P~gvavd~~s~~g~-Lyv~D~~-~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDD-LYWVGQR-DAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp CCCEEEECTTTTTCE-EEEECBT-SCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCceEEEccccCCCE-EEEEeCC-CCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 5789999995 65 5444333 889999988776543 222445689999999999444
Q ss_pred EEECC---C-EEEEEEeeCCcccceeEEEeccccCeeEEEEcC-CCCceEEEEeeCCCcEEEEeCCCCceeEEe-c-CCC
Q 001367 413 VAYSK---H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF-E-GHG 485 (1091)
Q Consensus 413 s~~~d---~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~ 485 (1091)
+.... . .+...+...+. .. ...+. .......+++.| +|. +.++-..++.|+.+|..++.....+ . +..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~-~~-~~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGF-TE-RLSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTT-CC-EEEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCe-ec-ccccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 44321 2 23333333221 11 11122 233456789999 665 5556666788999998877663322 1 112
Q ss_pred cceEEEeecccCCce-EEEEEecCCeEEEEecCCCCce----eeecCC---------------CCcEEEEEE--------
Q 001367 486 APVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGAR----VDYDAP---------------GLGCTRMAY-------- 537 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~----~~~~~~---------------~~~i~~~~~-------- 537 (1091)
..-..+++++ ++. +.++-...+.|+.++++..... ..+... -.....+++
T Consensus 273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~ 350 (433)
T 4hw6_A 273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG 350 (433)
T ss_dssp SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence 2234578754 555 5556666788999887632111 111110 113556888
Q ss_pred -cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc---------------cccceEEEEEc-CCCCEEEEEeCCC
Q 001367 538 -SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDDH 600 (1091)
Q Consensus 538 -s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~v~~~-~~~~~l~~~s~dg 600 (1091)
.++|...++-. +...|+.++. +|.. ..+.+... .-.....++++ +++..+++=..++
T Consensus 351 dd~~g~lyvaD~----~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 424 (433)
T 4hw6_A 351 EEDEYDFYFCDR----DSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH 424 (433)
T ss_dssp SSCCEEEEEEET----TTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred cCCCCcEEEEEC----CCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence 66666555543 2567888885 4543 33332210 11346778888 4554444444566
Q ss_pred eEEEEECC
Q 001367 601 VIKIWDMN 608 (1091)
Q Consensus 601 ~i~iwd~~ 608 (1091)
.|+.++++
T Consensus 425 rIr~i~~e 432 (433)
T 4hw6_A 425 RVRKIAPE 432 (433)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 77777653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.013 Score=70.28 Aligned_cols=238 Identities=10% Similarity=-0.030 Sum_probs=146.2
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC----ceeEEecCCC
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~ 485 (1091)
+|+.+. ...|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred cccccc-ccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 444443 345777777654322 23334556789999986664 4555556788999997753 2233333334
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
.....|++.+. .+.+.++-...+.|.+.+++.......+.........|++.|.+.+|+..-.. ....|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 45667777543 33566777778899999988665544444444567899999987777665421 1256888888755
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE-CC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE 643 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d 643 (1091)
.....+... ......|++.+.+..|+.+. ..+.|...++........+...........|++. +.+|+.+. ..
T Consensus 548 ~~~~lv~~~---l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~ 622 (791)
T 3m0c_C 548 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 622 (791)
T ss_dssp CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred ceEEEEeCC---CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCC
Confidence 443333322 25788999998888887765 5678999998766555554433332233455553 33454444 56
Q ss_pred CeEEEEECCCCCeecccc
Q 001367 644 NRIKILETPESNSVDAAG 661 (1091)
Q Consensus 644 g~i~iwd~~~~~~~~~~~ 661 (1091)
+.|...+..++..+..+.
T Consensus 623 ~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CEEEEEeCCCCcceEEee
Confidence 788888877775554443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0073 Score=67.50 Aligned_cols=251 Identities=10% Similarity=0.048 Sum_probs=143.6
Q ss_pred CeeEEEecC-CCCEEEEEe-C-CeEEEEEccCceeEEEecCC---CCCeEEEEE-------cCCCCcEEEEEeCCC----
Q 001367 803 AVPCFALSK-NDAYLFSAS-G-GVISLYIVMTFKTILTIMPP---SPTATSLAF-------NPHDNNVIAIGMDDS---- 865 (1091)
Q Consensus 803 ~v~~l~~s~-dg~~la~~~-d-g~i~iwd~~~~~~~~~~~~~---~~~i~~l~~-------s~~~~~~la~g~~dg---- 865 (1091)
....|+|+| ++..|.++. . +.|++.|++++......... ......++| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 567899998 455555554 3 57999998887766554432 235889999 99 677555555443
Q ss_pred ---eEEEEeccC-ccee-----eeeccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcC-------CCce------e--
Q 001367 866 ---TILIYNARS-SEVI-----SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVD-------GWGI------Q-- 920 (1091)
Q Consensus 866 ---~i~iwd~~~-~~~~-----~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~-------~~~~------~-- 920 (1091)
.|.+++... ++.. ..+... .....++++| ++.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366665443 2321 122211 2345788999 45556666678889999998 5443 0
Q ss_pred --eeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcC--Cccee--eeeec-----CC---------cc
Q 001367 921 --TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTCL--KQWFP-----IS---------SV 978 (1091)
Q Consensus 921 --~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~--~~~~~--~~~~~-----~h---------~~ 978 (1091)
.........+ .....++|+|+|++|.++ ....|+.++.. ++... ..+.. +. -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0112222111 245799999999965554 55688886543 33210 11111 00 11
Q ss_pred CEE-EEEEe-------eCCCEEEEEEcCCcEEEEeCCCCceEEEeecccc--------c-C--CC--Ccc-cccceeEEE
Q 001367 979 PIS-QATFS-------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY--------L-R--PT--TSC-LHVYPHAIA 1036 (1091)
Q Consensus 979 ~v~-~v~fs-------~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~--------~-~--~~--~~~-~~v~~~~~~ 1036 (1091)
... .++.. ++|.++++=....+|+.++ .+|... .+..... . . .+ ... .--.|..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 234 34444 4566666666778899998 566433 3331110 0 0 00 000 112467788
Q ss_pred eCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 1037 AHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1037 ~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
++++++.++++=..++.|+.+++...
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCC
Confidence 88843566666666778999998553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0081 Score=63.14 Aligned_cols=197 Identities=12% Similarity=0.156 Sum_probs=124.2
Q ss_pred CCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCC---CCc---EEEEEe-C--CCeEEEEecc--Ccceeee
Q 001367 813 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGM-D--DSTILIYNAR--SSEVISK 880 (1091)
Q Consensus 813 g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---~~~---~la~g~-~--dg~i~iwd~~--~~~~~~~ 880 (1091)
..+++... .+.+.+||+ +|+.++.+.. +.+..+..-|. +++ ++++.. . +++|.+|++. +++ +..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 34444333 688999999 8998888853 56666666551 122 233333 3 5799999773 433 333
Q ss_pred ecc------cc-CCeEEEEE--CCC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeeccCCCcCCCCCceEEEEcCC
Q 001367 881 LEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKD 946 (1091)
Q Consensus 881 l~~------h~-~~V~~l~~--spd-g~-~las~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d 946 (1091)
+.. .. ..+..+++ +|. ++ +++....+|.+..|++.. +... .+.++.+.-. ..+..+...+.
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~-~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS-GKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE-EEEEEEEECS----SCEEEEEEETT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc-ceEEEEecCC----CCcceEEEcCC
Confidence 311 11 56777888 774 44 677788899999999943 3222 2333333222 24778999998
Q ss_pred CCEEEEEec-CeEEEEEcC-----CcceeeeeecCC-ccCEEEEEE--eeCCC-EEEEEE-cCCcEEEEeCC-CCceEEE
Q 001367 947 QTRFLLVHE-THLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCR 1014 (1091)
Q Consensus 947 g~~la~~~d-~~i~vwd~~-----~~~~~~~~~~~h-~~~v~~v~f--s~dg~-~l~t~~-~dg~v~iwd~~-~~~~~~~ 1014 (1091)
...|.++.+ ..|..|+.+ +++.+..+-.++ ...+..|++ .++|+ +|++++ .+.++.+||.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 888888654 456666754 344554432333 346888887 45666 666666 56799999997 7788877
Q ss_pred eecc
Q 001367 1015 ILST 1018 (1091)
Q Consensus 1015 ~~~~ 1018 (1091)
|...
T Consensus 271 f~Ig 274 (355)
T 3amr_A 271 FRIT 274 (355)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7633
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.024 Score=68.11 Aligned_cols=215 Identities=10% Similarity=-0.044 Sum_probs=130.0
Q ss_pred CCccEEEEEECCCCCEEEEE-ECCCEEEEEEeeCCccc-ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 395 PGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
....+..|+|.+.+..|..+ ...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 34567899999966555554 45678888888753210 111123334456778999988765 4556666789999997
Q ss_pred CCCceeEEecCCCcceEEEeecccCCceEEEEEecC-CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
........+.........|++.+. .+.++++-... +.|...+++...........-.....|++++.+..|+.+-.
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~-- 577 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCCeEEEEEeCCCCCcceEEEecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC--
Confidence 755433333334445778888654 23444444333 67888888765554455444457889999988888777643
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEe
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~ 617 (1091)
+...|...++............. .......|++. +.+|+.+. ..+.|...|..+|+.+..+.
T Consensus 578 -~~~~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 -KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -CCCcEEEEecCCCceEEEecCCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 25579999986554444433211 11234455553 34555544 56778888877776655553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0095 Score=62.63 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=119.9
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeeccc--CCce---E-EEEEec--CCeEEEEecCCCC-ceeeecC
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK--ENIH---F-IFSISV--DGKIKAWLYDSLG-ARVDYDA 527 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~---~-l~s~~~--dg~i~iwd~~~~~-~~~~~~~ 527 (1091)
+++.....+-+.+||+ +|+.++.+.. +.++.+.+.+. -+++ + +++.-. +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666666788999998 8999988864 45666554331 0111 2 233333 5789999875322 2333311
Q ss_pred ------CC-CcEEEEEE--cCC-CC-EEEEEecCCCCceEEEEEec-------CCceeeEEEecccccccceEEEEEcCC
Q 001367 528 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1091)
Q Consensus 528 ------~~-~~i~~~~~--s~d-~~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~v~~~~~ 589 (1091)
.. ..+..+|+ +|. ++ ++++... ++.+..|++ .+.+.++.+... ..+..|...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45667777 774 44 3444432 456888877 234666777653 46788889999
Q ss_pred CCEEEEEeCCCeEEEEECC-----CCeeEEEEeCCCCCCCCceEEE--ccCCC-EEEEEE-CCCeEEEEECC-CCCeecc
Q 001367 590 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA 659 (1091)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~ 659 (1091)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .++++.+|+.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9999999999887777755 3455555543322235677777 45555 666666 57799999986 4444433
Q ss_pred c
Q 001367 660 A 660 (1091)
Q Consensus 660 ~ 660 (1091)
+
T Consensus 271 f 271 (355)
T 3amr_A 271 F 271 (355)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.025 Score=63.21 Aligned_cols=252 Identities=13% Similarity=0.097 Sum_probs=140.5
Q ss_pred CcEEEEEcC-CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE-------CCC
Q 001367 336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-------SPD 407 (1091)
Q Consensus 336 ~V~~v~fsp-dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-------spd 407 (1091)
....|+|+| ++..|+++-...+.|++.|..++........ -.+.-.....++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~----------------~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI----------------NTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC----------------TTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc----------------CccccCCCcEEEEeecccccCCC
Confidence 467899999 4545666665557788899887765532000 0112246899999 999
Q ss_pred CCEEEEEECCC-------EEEEEEeeC-Ccccc-e-eEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC----
Q 001367 408 GSLLGVAYSKH-------IVQLYAYHG-GSDAR-Q-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---- 473 (1091)
Q Consensus 408 g~~las~~~d~-------~i~iwd~~~-~~~~~-~-~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---- 473 (1091)
|++|.++...+ .|.+.+... |.... . ...+... .....++++|++.. ++++-..++.|..+|+.
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99776665443 355665444 22210 0 0112211 23457889996654 56666678889999987
Q ss_pred ---CCce-----------eEE-ec-CCCcceEEEeecccCCce-EEEEEecCCeEEEEecCCCCce----eeecCC---C
Q 001367 474 ---TGSR-----------TYS-FE-GHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGAR----VDYDAP---G 529 (1091)
Q Consensus 474 ---~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~----~~~~~~---~ 529 (1091)
++.. ... +. +.......+++++ ++. +.++-+..+.|+.++.+..... ..+... .
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 5553 112 11 2233457788854 556 4555567788998776543211 111110 0
Q ss_pred ------------CcEE-EEEEc-------CCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc-------------
Q 001367 530 ------------LGCT-RMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL------------- 576 (1091)
Q Consensus 530 ------------~~i~-~~~~s-------~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~------------- 576 (1091)
.... .++.. +++...++-. +...|+.++ .+|. +.++.+...
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~----~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDR----LNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEG----GGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEEC----CCCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence 1123 44454 3455444433 266788888 4553 444443210
Q ss_pred --------cccceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeE
Q 001367 577 --------QHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLL 613 (1091)
Q Consensus 577 --------~~~~v~~v~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~ 613 (1091)
.-.....|++.++ +..+++=..+..|+.++++.....
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 1134667888886 544444456677888777654443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0004 Score=83.07 Aligned_cols=234 Identities=9% Similarity=-0.017 Sum_probs=133.8
Q ss_pred CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC----CceeEEecCCCcceEEEe
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC 492 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~ 492 (1091)
.+.|+..++.+.+... +......+..++|.+.+.. ++++-...+.|+.+++.+ ......+.........++
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 3467777776654322 1122345678999987763 344444567899999875 222222211122344566
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEe
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
+.+. .+.++++-...+.|.+.+++.......+.........++++|.+.+|+..... ..+.|..+++..... ..+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~~-~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDI-YSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCCC-CEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCCe-eEEE
Confidence 6433 33455565667889999887654444333333455778999977666654321 125688887754332 2221
Q ss_pred cccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 573 GLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 573 ~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
... ......|+++|++..|+.+. ..+.|..+++........+...........+++..+ .++++....+.|..++.
T Consensus 536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 111 24567899999877666654 667899999875443333322222223455666554 44455556788999998
Q ss_pred CCCCeeccccc
Q 001367 652 PESNSVDAAGV 662 (1091)
Q Consensus 652 ~~~~~~~~~~~ 662 (1091)
.+++.+..+..
T Consensus 613 ~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 LTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECCCT
T ss_pred cCCCceEEeec
Confidence 77766655543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.012 Score=61.24 Aligned_cols=203 Identities=12% Similarity=0.083 Sum_probs=124.0
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEE-ecC----CC--CCeEEEEE---cCCCCcEEEEEeC------
Q 001367 802 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGMD------ 863 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~~~~~la~g~~------ 863 (1091)
.-..++.|.+....+..++ .++|..|+...+..... +.. .. ..+..+.+ .| +++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 3445788887666666666 79999999986644333 221 11 14578999 68 6888876442
Q ss_pred -------CCeEEEEecc---Ccceeeeec--ccc-----------CCeEEEEECCCCCEEEEEeCC-CcEEEEEcCCCce
Q 001367 864 -------DSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGI 919 (1091)
Q Consensus 864 -------dg~i~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~spdg~~las~s~D-g~i~vwd~~~~~~ 919 (1091)
+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 6789999999 777654332 211 247899999999999998887 7766666554321
Q ss_pred eeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcce--eeeeecCC---ccCEEEE-EEeeCCCE-
Q 001367 920 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM- 991 (1091)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~--~~~~~~~h---~~~v~~v-~fs~dg~~- 991 (1091)
. ...+....... ......+++.|||+.|++. ..+.+..+|+.+... +..-..+. -.....+ .--.+|+.
T Consensus 172 ~-~~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 172 S-TFAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp E-EEEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred e-eeeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 1 11111111111 1247799999999988883 478899999885333 21100021 1223443 33457877
Q ss_pred EEEEEcCCcEEEEeCCC
Q 001367 992 VFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 992 l~t~~~dg~v~iwd~~~ 1008 (1091)
|++....+.+.+.+.+.
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 45555566555555444
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.038 Score=59.77 Aligned_cols=230 Identities=12% Similarity=0.062 Sum_probs=125.6
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEccCce-eEEEec---CCCCCeEEEEEcCC---CCcEEEEEeC---C----CeE
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI 867 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---~~~~la~g~~---d----g~i 867 (1091)
.....+++.|||+++++-.+|.|++++ .+++ .+..+. ........++++|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 356789999999977777689999997 4454 222221 12346889999993 3555444332 3 577
Q ss_pred EEEeccCc-------cee-eeecc-ccCCeEEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCcee-----
Q 001367 868 LIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ----- 920 (1091)
Q Consensus 868 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~spdg~~las~s~D-------------g~i~vwd~~~~~~~----- 920 (1091)
..|+...+ +.+ ..+.. .......|+|.|||.+.++.+.. |.|.-.+.+.. ..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 78877654 111 11221 11124679999999988775432 33444444321 00
Q ss_pred -eeeeeeccCCCcCCCCCceEEEEcC-CCCEEEEE--ecC--eEEEEEcCCcc------------------eeeeeecCC
Q 001367 921 -TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HET--HLAIYEAEELT------------------CLKQWFPIS 976 (1091)
Q Consensus 921 -~~~~~~~~~~~~~~~~~i~~l~fs~-dg~~la~~--~d~--~i~vwd~~~~~------------------~~~~~~~~h 976 (1091)
....+. .++. ....++|+| +|++.++- .+. .|.+.. .+. .+..+-..
T Consensus 187 ~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~- 257 (354)
T 3a9g_A 187 PNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE- 257 (354)
T ss_dssp TTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC-
T ss_pred CCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC-
Confidence 000111 1221 256899999 67777762 222 344432 222 11111011
Q ss_pred ccCEEEEEEe-------eCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEe
Q 001367 977 SVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1049 (1091)
Q Consensus 977 ~~~v~~v~fs-------~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~ 1049 (1091)
......++|. .+|.++++....+.|...++.......... ..+... .-.+..+++.| ||.++++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~--~~~~~~----~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS--TFFKNV----FGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE--EECTTT----SCCEEEEEECT-TSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee--eeccCC----CCCeeEEEECC-CCcEEEEEe
Confidence 3457788883 577777766666788888887532221111 111111 12456788899 477666654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00055 Score=81.86 Aligned_cols=205 Identities=10% Similarity=0.007 Sum_probs=123.5
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEEccC----ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 802 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
..+..++|++.+..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789998888887775 57899999875 22222222222345678888645666665566789999998755
Q ss_pred ceeeeeccccCCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE
Q 001367 876 EVISKLEGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 953 (1091)
Q Consensus 876 ~~~~~l~~h~~~V~~l~~spdg~~las~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~ 953 (1091)
.....+.........|++.|++.+|..+.. .+.|.+.++...... .+. .... .....|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~---~l~--~~~l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLV--TENI---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC---EES--CSSC---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee---EEE--eCCC---CCccEEEEeccCCEEEEE
Confidence 433333323345678999997655544432 267888777653211 111 1111 135689999987766654
Q ss_pred --ecCeEEEEEcCCcceeeeeecC--CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 954 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 954 --~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
..+.|.++++... ....+... .......|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4568999998643 23332221 1223345565443 444555566889999998888776654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.13 Score=55.13 Aligned_cols=235 Identities=12% Similarity=0.090 Sum_probs=143.6
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCE
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1091)
.-.+|..+ ++|.-. ..++.|+|+++...+....+ ...|..=.|-.+. .|+-.+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~ta 126 (494)
T 1bpo_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA 126 (494)
T ss_dssp EEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SSE
T ss_pred eeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CCe
Confidence 44577776 455443 58899999999988875332 2456666666444 444443 556
Q ss_pred EEEEEeeCCcccceeEEEeccc----cCeeEEEEcCCCCceEEEEee------CCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 420 VQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
|+-|++.+..... ..+..|. ..|..-..+++.+++ +++|- -.|.+.+|..+.+ .-+.+.||.+.-.
T Consensus 127 VyHWsi~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 202 (494)
T ss_dssp EEEEESSSSCCCE--EEEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEE
T ss_pred eEEecccCCCCch--hheecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeecccc-ccchheeeeeeeE
Confidence 9999997644332 2344443 357777778999963 33332 2467889996644 4577888887776
Q ss_pred EEeecccCCce-EEEEEecC---CeEEEEecCCC---Cce-----eeec----CCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 490 SLCPHAKENIH-FIFSISVD---GKIKAWLYDSL---GAR-----VDYD----APGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 490 ~~~~~~~~~~~-~l~s~~~d---g~i~iwd~~~~---~~~-----~~~~----~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.+.+....... ++..+... +.+++-++... ... ..+. ....-..++..|+.-..+...+.
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 66654333222 33333332 78999988653 111 1111 11223457778887777777764
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
-|.+++||+.++.++..-+-.. ..|...+......-+++....|.|.--.++.
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 7789999999999887665444 5565555555555555555666555444443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.032 Score=60.45 Aligned_cols=230 Identities=12% Similarity=0.091 Sum_probs=120.6
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEccCcee--EEEec---CCCCCeEEEEEcCC---CCcEEEEEeCC-----CeEE
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPH---DNNVIAIGMDD-----STIL 868 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~---~~~~la~g~~d-----g~i~ 868 (1091)
.....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+|+ ++.+.++-... +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 356799999999977776689999998 3432 22221 12356889999993 24444444332 6788
Q ss_pred EEeccCcc-----e-eeeec---cccCCeEEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCcee------
Q 001367 869 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 920 (1091)
Q Consensus 869 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~spdg~~las~s~D-------------g~i~vwd~~~~~~~------ 920 (1091)
.|+...+. . +..+. +.......++|.|||.+.++.+.. |.|.-++.+. ...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88877431 1 12233 111123689999999877765432 3444444432 100
Q ss_pred -----eeeeeeccCCCcCCCCCceEEEEcC-CCCEEEEE-ecCeE------EEEEcCCcc------------------ee
Q 001367 921 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV-HETHL------AIYEAEELT------------------CL 969 (1091)
Q Consensus 921 -----~~~~~~~~~~~~~~~~~i~~l~fs~-dg~~la~~-~d~~i------~vwd~~~~~------------------~~ 969 (1091)
....+. .++. ....++|+| +|.+.++- ..+.+ .|.-+..+. .+
T Consensus 188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000000 1111 256789999 67766662 22221 233223232 11
Q ss_pred eeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEe-ecccccCCCCcccccceeEEEeCCCCCCeEEEE
Q 001367 970 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1048 (1091)
Q Consensus 970 ~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g 1048 (1091)
..+ .+......++| .+|.++++....+.|...++......... ....++.. .-.+..+++.| ||.++++.
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence 111 12334567888 57776666556667777777644311000 00111111 12456788888 46666554
Q ss_pred e
Q 001367 1049 L 1049 (1091)
Q Consensus 1049 ~ 1049 (1091)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.048 Score=59.02 Aligned_cols=238 Identities=9% Similarity=0.076 Sum_probs=126.0
Q ss_pred CeeEEEecCCCC-EEEEEeCCeEEEEEccCceeEEEec-------CCCCCeEEEEEcCC---CCcEEEEEeC-------C
Q 001367 803 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM-------PPSPTATSLAFNPH---DNNVIAIGMD-------D 864 (1091)
Q Consensus 803 ~v~~l~~s~dg~-~la~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~l~~s~~---~~~~la~g~~-------d 864 (1091)
....++|.|||+ ++++...|.|++++.. ++....+. ........++|+|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 7776668999999854 33221111 12345689999994 3544444332 2
Q ss_pred CeEEEEeccCc--c-----ee-eeec-----cccCCeEEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCc
Q 001367 865 STILIYNARSS--E-----VI-SKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG 918 (1091)
Q Consensus 865 g~i~iwd~~~~--~-----~~-~~l~-----~h~~~V~~l~~spdg~~las~s~D-------------g~i~vwd~~~~~ 918 (1091)
..|..|++..+ + .+ ..+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 1 11 1122 132 3579999999777765442 345555554310
Q ss_pred ee----------eeeeeeccCCCcCCCCCceEEEEcC-CCCEEEEE--ecCeEEEEEcCCccee----------------
Q 001367 919 IQ----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTCL---------------- 969 (1091)
Q Consensus 919 ~~----------~~~~~~~~~~~~~~~~~i~~l~fs~-dg~~la~~--~d~~i~vwd~~~~~~~---------------- 969 (1091)
.. ...... .++. ....++|.| +|++.++- .++.=.|.-+..+...
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 000110 1221 267899999 67666662 2221122222211110
Q ss_pred -------------eeeecCCccCEEEEEEee-------CCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccc
Q 001367 970 -------------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1029 (1091)
Q Consensus 970 -------------~~~~~~h~~~v~~v~fs~-------dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1091)
..+.-.+...+..++|.. +|.++++.-..+.|...++..+....... .+.. ..
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~----~~ 322 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILTD----RG 322 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESGG----GC
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cccC----CC
Confidence 000001233567788864 57777776677788888887664433221 1111 11
Q ss_pred cceeEEEeCCCCCCeEEEEe-cCCcEEEEec
Q 001367 1030 VYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1059 (1091)
Q Consensus 1030 v~~~~~~~~p~d~~~l~~g~-~dg~v~~w~~ 1059 (1091)
-.+..+++.| ||.++++.. .+| +||.+
T Consensus 323 ~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 2466788999 577665543 334 55555
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.018 Score=61.24 Aligned_cols=231 Identities=10% Similarity=0.023 Sum_probs=124.0
Q ss_pred EEEEEe---CCeEEEEEccCceeEE--EecCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEeccCccee--eeecc
Q 001367 815 YLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEVI--SKLEG 883 (1091)
Q Consensus 815 ~la~~~---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~la~g~~d----g~i~iwd~~~~~~~--~~l~~ 883 (1091)
+++.|+ ...+.+||..+.+-.. .+.........+.+ ++++++.|+.+ ..+.+||..+.+-. ..+..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 444454 2579999988765332 22222222222332 66788888765 57899999886532 22222
Q ss_pred ccCCeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e--
Q 001367 884 HSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-- 954 (1091)
Q Consensus 884 h~~~V~~l~~spdg~~las~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~-- 954 (1091)
....-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+. .... -.+++ .-++++.+.| .
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~-----~~~~~-~~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML--TQRC-----SHGMV-EANGLIYVCGGSLG 160 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS--SCCB-----SCEEE-EETTEEEEECCEES
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc--CCcc-----eeEEE-EECCEEEEECCCCC
Confidence 1122222233 67777888765 45889999886543321111 1111 11222 2366666663 2
Q ss_pred -------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceEEEeecccccC
Q 001367 955 -------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLR 1022 (1091)
Q Consensus 955 -------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~ 1022 (1091)
-..+.+||..+.+....-.... ......+..-++++++.|+.+ ..+.+||+.+.+.... ..++
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p 235 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV----SPMP 235 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC----CCCS
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC----CCCC
Confidence 3458899998876443211111 111112223367777777654 3588999998865422 2222
Q ss_pred CCCcccccceeEEEeCCCCCCeEEEEecC-----CcEEEEecCCCCCCcccCCCC
Q 001367 1023 PTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPD 1072 (1091)
Q Consensus 1023 ~~~~~~~v~~~~~~~~p~d~~~l~~g~~d-----g~v~~w~~~~~~~~~~~~~~~ 1072 (1091)
.. .....++.. ++.+++.|+.+ ..+.+||+.. .+|...++.
T Consensus 236 ~~----r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~ 281 (306)
T 3ii7_A 236 WK----GVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTET--DKWVANSKV 281 (306)
T ss_dssp CC----BSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTT--TEEEEEEEE
T ss_pred CC----ccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCC--CeEEeCCCc
Confidence 22 111112222 46888999865 4677888855 558876543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.23 Score=53.60 Aligned_cols=233 Identities=17% Similarity=0.137 Sum_probs=118.6
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC---CCE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL 410 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~ 410 (1091)
-...+.++|.|||+ |+++ ..+|.|.+++ .+|+ .....+ . +..........|+|+|+ +.+
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~------------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASF------------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEEC------------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeecc------------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 34789999999997 6555 4559999997 4554 110000 0 11223456889999998 555
Q ss_pred EEEEEC----C----CEEEEEEeeCCc-cc---cee-EEEe-ccccCeeEEEEcCCCCceEEEEeeC-------------
Q 001367 411 LGVAYS----K----HIVQLYAYHGGS-DA---RQQ-LEID-AHVGNVNDLAFSAPCKQISVITCGD------------- 463 (1091)
Q Consensus 411 las~~~----d----~~i~iwd~~~~~-~~---~~~-~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~------------- 463 (1091)
|.++.. + +.|..|+...+. .+ +.+ ..+. +.......++|.|||. +.++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 554432 3 567777776541 11 111 1122 1112346799999997 5555432
Q ss_pred CCcEEEEeCCCC---------ceeEEecCCCcceEEEeecccCCceEEEEEecCC---eEEEEecCCCC-----------
Q 001367 464 DKTIKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG----------- 520 (1091)
Q Consensus 464 d~~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~----------- 520 (1091)
.|.|.-++.... ..+.. .++.. ...++|++. ++.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA 242 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence 245555554321 01211 23333 345677542 344444432222 13222 1111
Q ss_pred -------ceeeecCCCCcEEEEEEc-------CCCCEEEEEecCCCCceEEEEEecCCc-eee--EEEecccccccceEE
Q 001367 521 -------ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVSV 583 (1091)
Q Consensus 521 -------~~~~~~~~~~~i~~~~~s-------~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~~ 583 (1091)
....+.........++|. .+|.++++... .+.|...++... +.. ..+... ....+..
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~~ 316 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLRD 316 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEEE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCeeE
Confidence 111221223356778883 46655554432 445777777643 222 122211 1256888
Q ss_pred EEEcCCCCEEEEEe
Q 001367 584 VHFDTAKDQILAAG 597 (1091)
Q Consensus 584 v~~~~~~~~l~~~s 597 (1091)
+++.|||...++..
T Consensus 317 v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 317 VVIDDDGGILISTS 330 (354)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCcEEEEEe
Confidence 99999986555543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.016 Score=62.14 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=82.4
Q ss_pred EEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCC----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce----
Q 001367 806 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 877 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~---- 877 (1091)
......+|.-++.+.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 345667899999999999999998855555555543 23688999999 899999876 55799988873321
Q ss_pred --------eeeecc------ccCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCC
Q 001367 878 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 878 --------~~~l~~------h~~~V~~l~~spd---g~~las~s~Dg~i~vwd~~~ 916 (1091)
...+.- ...+|..+.|+|- +..|++-..|++|++||+..
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 111211 2467999999994 56899999999999999987
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.15 Score=55.09 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=62.7
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC---CCEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLL 411 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l 411 (1091)
...+.++|.|||+ ++++ ..+|.|.+++ +++.... .++ . +..........|+|+|| +.+|
T Consensus 31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~-----~~~-------~--v~~~g~~~p~gia~~pdf~~~g~l 92 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTY-----AEL-------S--VYHRGESGLLGLALHPRFPQEPYV 92 (352)
T ss_dssp SCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEE-----EEC-------C--CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred CCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEe-----ecc-------e--EeecCCCCceeEEECCCCCCCCEE
Confidence 3788999999998 5555 4559999998 4432110 000 0 12223467889999998 5555
Q ss_pred EEEEC-C-----CEEEEEEeeCCccc--ceeE-EEe---ccccCeeEEEEcCCCCceEEEEe
Q 001367 412 GVAYS-K-----HIVQLYAYHGGSDA--RQQL-EID---AHVGNVNDLAFSAPCKQISVITC 461 (1091)
Q Consensus 412 as~~~-d-----~~i~iwd~~~~~~~--~~~~-~~~---~h~~~v~~~~~s~d~~~~~l~s~ 461 (1091)
.++.. . +.|..|+...+... +.+. .+. +.......++|.|||. +.++.
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 55433 2 56888887754211 1111 122 1112346899999996 45543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.33 Score=52.02 Aligned_cols=269 Identities=10% Similarity=0.119 Sum_probs=159.6
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEE
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~ 436 (1091)
.+|.|-|+..+..+..+++. --+.-.+|..+.+|.=. ..++.|+|+++.+.++ .
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~----------------------AdsAIMnP~~~iiALra-g~~lQiFnle~K~klk---s 101 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPIS----------------------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMK---A 101 (494)
T ss_dssp CEEEEEETTSTTSCEEEECC----------------------CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEE---E
T ss_pred CeEEEEECCCCCcceecccc----------------------cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhc---c
Confidence 47889999887766543321 11334677777666654 6789999999976544 2
Q ss_pred EeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC-CceeEEecCCCc--ceEEEeecccCCceEEEEEe-------
Q 001367 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEGHGA--PVYSLCPHAKENIHFIFSIS------- 506 (1091)
Q Consensus 437 ~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~------- 506 (1091)
+.- ...|..=.|-.+.. |+-.+ +..|+-|++.. ..+.+.|..|.. ...-+.+..+++.++++..+
T Consensus 102 ~~~-~e~VvfWkWis~~~---l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 176 (494)
T 1bpo_A 102 HTM-TDDVTFWKWISLNT---VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (494)
T ss_dssp EEC-SSCCCEEEEEETTE---EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred eec-CCCceEEEecCCCe---EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence 222 34566667765543 33333 45799999874 355666655542 12222333355666665443
Q ss_pred cCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCC--CEEEEEecCCCCceEEEEEecCCc---------eeeEEEeccc
Q 001367 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEG---------AIKRTYQGLQ 575 (1091)
Q Consensus 507 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~iwd~~~~---------~~~~~~~~~~ 575 (1091)
-.|.+.+|..+... ...+.+|......+.+..+. ..|++........+.+.+.++... +.+..+-...
T Consensus 177 v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe 255 (494)
T 1bpo_A 177 VVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (494)
T ss_dssp EEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred ccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc
Confidence 24678888876543 33444444433333332211 123322221112356888887532 1111122222
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
...+-..++..++.-..++..+.-|.+.+||++++.++..-+.... .|...+......-++.....|.|.-..++...
T Consensus 256 ~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 256 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 2345566788888888999999999999999999999987765443 34444455555556666688888888877765
Q ss_pred eecc
Q 001367 656 SVDA 659 (1091)
Q Consensus 656 ~~~~ 659 (1091)
.+..
T Consensus 334 ivpy 337 (494)
T 1bpo_A 334 IIPY 337 (494)
T ss_dssp HHHH
T ss_pred chhh
Confidence 5543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.1 Score=54.35 Aligned_cols=165 Identities=7% Similarity=0.043 Sum_probs=108.6
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecC------CCccEEEEEE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD------PGVSVNRVVW 404 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~l~~ 404 (1091)
....--..+++|.+....++++.-..++|..||...+..... . +.+ ....+..|.|
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~-----------------~~~~s~~g~~~~~~sGl~~ 70 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-V-----------------IDGASSNGDGEQQMSGLSL 70 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-C-----------------CTTTCCSSCCSEEEEEEEE
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-e-----------------cCCccccCCCcceeeEEEE
Confidence 344446678899886555767766789999999976654321 1 111 1224689999
Q ss_pred ---CCCCCEEEEEE-------------CCCEEEEEEee---CCcccceeEEEeccc-----------cCeeEEEEcCCCC
Q 001367 405 ---SPDGSLLGVAY-------------SKHIVQLYAYH---GGSDARQQLEIDAHV-----------GNVNDLAFSAPCK 454 (1091)
Q Consensus 405 ---spdg~~las~~-------------~d~~i~iwd~~---~~~~~~~~~~~~~h~-----------~~v~~~~~s~d~~ 454 (1091)
.|+++++++.. .+..|..+|+. +++.+... .+.... .....++..++|+
T Consensus 71 ~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn 149 (334)
T 2p9w_A 71 LTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN 149 (334)
T ss_dssp SSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC
T ss_pred eccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC
Confidence 68888887654 26779999999 77654322 232221 2488999999999
Q ss_pred ceEEEEeeCC-CcEEEEeCCCCceeEEec--C----CCcceEEEeecccCCceEEEEEecCCeEEEEecCCC
Q 001367 455 QISVITCGDD-KTIKVWDAVTGSRTYSFE--G----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1091)
Q Consensus 455 ~~~l~s~~~d-~~i~iwd~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 519 (1091)
..++++.- +.|...+.. |+.+..+. . .....+.|+++| ++..|+.....|.+..+|+...
T Consensus 150 --aYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 150 --SYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp --EEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred --EEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 77778777 787777744 33333321 1 112256788854 6667777766999999998853
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00029 Score=56.03 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=32.7
Q ss_pred CCchhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001367 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1091)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~ 35 (1091)
|++...||..||..||+|.||..||-+|+.||++.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999874
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.05 Score=57.55 Aligned_cols=222 Identities=11% Similarity=0.075 Sum_probs=118.1
Q ss_pred CeEEEEEccCceeEEEecCCCCCe-EEEEEcCCCCcEEEEEeCCC-----eEEEEeccCccee--eeeccccCCeEEEEE
Q 001367 822 GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVI--SKLEGHSKRVTGLVF 893 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~dg-----~i~iwd~~~~~~~--~~l~~h~~~V~~l~~ 893 (1091)
..+.+||..+.+-...-..+.... .+++. - ++++++.|+.++ .+.+||..+.+-. ..+......-..+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 458889988765332211111111 12222 2 567888887553 6889998876532 222222122222233
Q ss_pred CCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e-------cCeEEE
Q 001367 894 SDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-------ETHLAI 960 (1091)
Q Consensus 894 spdg~~las~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~-------d~~i~v 960 (1091)
++++++.|+.++ .+.+||+.+.+......+.. .. .-.+++ .-++++++.| . -..+.+
T Consensus 108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r-----~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 108 --NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT--RR-----SSVGVG-VVGGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp --TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS--CC-----BSCEEE-EETTEEEEECCEETTTTEECCCEEE
T ss_pred --CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC--cc-----cCceEE-EECCEEEEEeCCCCCCCccccEEEE
Confidence 677788887654 47788988765433221111 11 111222 2366666663 2 235889
Q ss_pred EEcCCcceeeeeecCC-ccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceEEEeecccccCCCCcccccceeE
Q 001367 961 YEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1034 (1091)
Q Consensus 961 wd~~~~~~~~~~~~~h-~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1034 (1091)
||..+.+....-.... .... .+..-++++++.|+.+ ..+.+||+.+.+....- .++... ....+
T Consensus 178 yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~~~~r----~~~~~ 247 (302)
T 2xn4_A 178 YNATTNEWTYIAEMSTRRSGA--GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA----DMNMCR----RNAGV 247 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSC--EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC----CCSSCC----BSCEE
T ss_pred EeCCCCcEEECCCCccccccc--cEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC----CCCCcc----ccCeE
Confidence 9998776543211111 1111 1223367788888765 36899999988655321 222221 11112
Q ss_pred EEeCCCCCCeEEEEecCC-----cEEEEecCCCCCCcccCC
Q 001367 1035 IAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1070 (1091)
Q Consensus 1035 ~~~~p~d~~~l~~g~~dg-----~v~~w~~~~~~~~~~~~~ 1070 (1091)
+.. ++.+++.|+.++ .+.+||+.. .+|...+
T Consensus 248 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~ 283 (302)
T 2xn4_A 248 CAV---NGLLYVVGGDDGSCNLASVEYYNPTT--DKWTVVS 283 (302)
T ss_dssp EEE---TTEEEEECCBCSSSBCCCEEEEETTT--TEEEECS
T ss_pred EEE---CCEEEEECCcCCCcccccEEEEcCCC--CeEEECC
Confidence 222 468888888764 488898865 4588765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.022 Score=60.39 Aligned_cols=224 Identities=12% Similarity=0.055 Sum_probs=119.2
Q ss_pred CeEEEEEccCceeEEEecCCCCCe-EEEEEcCCCCcEEEEEeCC-----CeEEEEeccCcc---e--eeeeccccCCeEE
Q 001367 822 GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMDD-----STILIYNARSSE---V--ISKLEGHSKRVTG 890 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~d-----g~i~iwd~~~~~---~--~~~l~~h~~~V~~ 890 (1091)
..+.+||..+.+-...-..+.... .+++. . ++++++.|+.+ ..+.+||..+.+ - +..+......-..
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 358899988765332211111111 22222 3 56788888765 368999988765 2 2222222222222
Q ss_pred EEECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ec-----CeEE
Q 001367 891 LVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----THLA 959 (1091)
Q Consensus 891 l~~spdg~~las~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d-----~~i~ 959 (1091)
+.+ ++++++.|+.+ ..+.+||+.+.+......+ +... ....+..-++++++.| .+ ..+.
T Consensus 109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 178 (301)
T 2vpj_A 109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM--QTAR------EGAGLVVASGVIYCLGGYDGLNILNSVE 178 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC--SSCC------BSCEEEEETTEEEEECCBCSSCBCCCEE
T ss_pred EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC--CCCc------ccceEEEECCEEEEECCCCCCcccceEE
Confidence 223 67777777654 3588999888664332221 1111 1112222366666663 32 4689
Q ss_pred EEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceEEEeecccccCCCCcccccceeE
Q 001367 960 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1034 (1091)
Q Consensus 960 vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1034 (1091)
+||..+.+....-.... ......+..-+++.++.|+.+ ..+.+||+.+.+....- .++.. .....+
T Consensus 179 ~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~----~~p~~----r~~~~~ 249 (301)
T 2vpj_A 179 KYDPHTGHWTNVTPMAT-KRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT----SMTTP----RCYVGA 249 (301)
T ss_dssp EEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC----CCSSC----CBSCEE
T ss_pred EEeCCCCcEEeCCCCCc-ccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC----CCCCc----ccceeE
Confidence 99998776543211111 111112223367777777764 46899999988765321 22222 111112
Q ss_pred EEeCCCCCCeEEEEecCC-----cEEEEecCCCCCCcccCCC
Q 001367 1035 IAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1071 (1091)
Q Consensus 1035 ~~~~p~d~~~l~~g~~dg-----~v~~w~~~~~~~~~~~~~~ 1071 (1091)
+.. ++.+++.|+.++ .+.+||+.. .+|...++
T Consensus 250 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~ 286 (301)
T 2vpj_A 250 TVL---RGRLYAIAGYDGNSLLSSIECYDPII--DSWEVVTS 286 (301)
T ss_dssp EEE---TTEEEEECCBCSSSBEEEEEEEETTT--TEEEEEEE
T ss_pred EEE---CCEEEEEcCcCCCcccccEEEEcCCC--CeEEEcCC
Confidence 222 367888888763 567788754 56876654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.072 Score=56.72 Aligned_cols=230 Identities=11% Similarity=0.081 Sum_probs=121.5
Q ss_pred eCCeEEEEEccCceeEE-EecCCCCCeEEEEEcCCCCcEEEEEeC-----C------CeEEEEeccCccee--eeecccc
Q 001367 820 SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEVI--SKLEGHS 885 (1091)
Q Consensus 820 ~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~la~g~~-----d------g~i~iwd~~~~~~~--~~l~~h~ 885 (1091)
+...+.+||..+.+-.. .+..+.......+... ++++++.|+. . ..+..||..+.+-. ..+....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 34789999998776432 2222223333334444 6778888873 1 13788898876532 2222111
Q ss_pred CCeEEEEECCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e-c
Q 001367 886 KRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E 955 (1091)
Q Consensus 886 ~~V~~l~~spdg~~las~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~-d 955 (1091)
..-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+. .. .....+...++++++.| . +
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~------r~~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP--YV------VYGHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS--SC------CBSCEEEEETTEEEEECCBCT
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC--Cc------ccceeEEEECCEEEEEeCCCC
Confidence 11122222 56777777742 45889999886533221111 11 11122233566666664 3 2
Q ss_pred -----CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCC-----cEEEEeCCCCceEEEeecccccCCCC
Q 001367 956 -----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTT 1025 (1091)
Q Consensus 956 -----~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~ 1025 (1091)
..+.+||..+.+....-... .......+..-+++.++.|+.++ .+.+||+.+.+.... ...+..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~- 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF----EAFPQE- 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE----CCCSSC-
T ss_pred CCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC----CCCCCc-
Confidence 36999999877543321111 11111122234778888888664 488899988865532 122222
Q ss_pred cccccceeEEEeCCCCCCeEEEEecCC--------------cEEEEecCCCCCCcccCCCCcc
Q 001367 1026 SCLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDEI 1074 (1091)
Q Consensus 1026 ~~~~v~~~~~~~~p~d~~~l~~g~~dg--------------~v~~w~~~~~~~~~~~~~~~~~ 1074 (1091)
.....++.. ++.+++.|+.++ .+.+||+.. .+|...+|..+
T Consensus 234 ---r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~r 288 (315)
T 4asc_A 234 ---RSSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEE--KKWEGVLREIA 288 (315)
T ss_dssp ---CBSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT--TEEEEEESCSS
T ss_pred ---ccceeEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCC--ChhhhhccCCc
Confidence 111112222 368888888743 356777744 46887754443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.3 Score=52.71 Aligned_cols=242 Identities=8% Similarity=-0.022 Sum_probs=119.9
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEE----eccccCeeEEEEcCC---CCceEEEEeeC------
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI----DAHVGNVNDLAFSAP---CKQISVITCGD------ 463 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~----~~h~~~v~~~~~s~d---~~~~~l~s~~~------ 463 (1091)
.....|+|.|||++|.++...|.|++++.. +........+ .........++|+|+ +..+++.....
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 467899999999944455567889888743 2211111011 112345689999996 55433332221
Q ss_pred CCcEEEEeCCCC--ce--eEE----ec---CCCcceEEEeecccCCceEEEEEecC-------------CeEEEEecCCC
Q 001367 464 DKTIKVWDAVTG--SR--TYS----FE---GHGAPVYSLCPHAKENIHFIFSISVD-------------GKIKAWLYDSL 519 (1091)
Q Consensus 464 d~~i~iwd~~~~--~~--~~~----~~---~~~~~v~~~~~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~ 519 (1091)
...|..|++..+ .. ... +. .....-..++|. +||.+.++.+.. |.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666665433 11 111 11 011123457774 466655554432 45666665432
Q ss_pred C------------ceeeecCCCCcEEEEEEcC-CCCEEEEEecCCCCceEEEEEe--------cCCc-------------
Q 001367 520 G------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWN--------ESEG------------- 565 (1091)
Q Consensus 520 ~------------~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd--------~~~~------------- 565 (1091)
- ....+...-.....++|.| +|+..++ -...++...|.+.. ...+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 0 1111111223467899999 5554443 32211112232211 1000
Q ss_pred --------eeeEEEecccccccceEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCeeEEEEeC-CCCCCCCceEE
Q 001367 566 --------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRIC 629 (1091)
Q Consensus 566 --------~~~~~~~~~~~~~~~v~~v~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~ 629 (1091)
..+..+.. ...+..+.|.. ++.++++.-..+.|...+++.++....... ......+..++
T Consensus 254 ~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp BSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred CCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 00111111 12456677753 456666666778888888776654433221 11123578899
Q ss_pred EccCCCEEEEEE-CCCeE
Q 001367 630 FNKNGTLLAVIA-NENRI 646 (1091)
Q Consensus 630 ~s~~~~~l~~~~-~dg~i 646 (1091)
+.|||.+.++.. .+|.|
T Consensus 330 ~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 330 TGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp ECTTSCEEEEECSTTEEE
T ss_pred ECCCCcEEEEEeCCCCEE
Confidence 999998555433 24443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.043 Score=58.30 Aligned_cols=235 Identities=11% Similarity=0.058 Sum_probs=123.2
Q ss_pred cCCCCEEEEEe-----CCeEEEEEccCceeEEEecCCCCCe-EEEEEcCCCCcEEEEEeC----C-----CeEEEEeccC
Q 001367 810 SKNDAYLFSAS-----GGVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMD----D-----STILIYNARS 874 (1091)
Q Consensus 810 s~dg~~la~~~-----dg~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~----d-----g~i~iwd~~~ 874 (1091)
.-++.+++.|+ -..+.+||..+.+-...-..+.... .+++. - ++++++.|+. + ..+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 34566666665 1468999988765333211111111 12222 2 5677777776 2 3688899887
Q ss_pred ccee--eeeccccCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC
Q 001367 875 SEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 947 (1091)
Q Consensus 875 ~~~~--~~l~~h~~~V~~l~~spdg~~las~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg 947 (1091)
.+-. ..+......-..+.+ ++++++.|+.+ ..+.+||..+.+......+ +.... ....+.+ ++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~----~~~~~~~--~~ 169 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--LTRRI----GVGVAVL--NR 169 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--SSCCB----SCEEEEE--TT
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--Ccccc----ceEEEEE--CC
Confidence 6532 222221222222333 67777777644 3588999988653332211 11111 1122222 56
Q ss_pred CEEEEE-ec-----CeEEEEEcCCcceeeeeecCC-ccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceEEEe
Q 001367 948 TRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 948 ~~la~~-~d-----~~i~vwd~~~~~~~~~~~~~h-~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~~~~ 1015 (1091)
++++.| .+ ..+.+||..+.+....-.... ...-..+ .-+++.++.|+.+ ..+.+||+.+.+....
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~- 246 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC--VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV- 246 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE--EECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-
Confidence 666663 32 468999988776443211111 1111222 2377777777765 4699999998765421
Q ss_pred ecccccCCCCcccccceeEEEeCCCCCCeEEEEecCC-----cEEEEecCCCCCCcccCCC
Q 001367 1016 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1071 (1091)
Q Consensus 1016 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg-----~v~~w~~~~~~~~~~~~~~ 1071 (1091)
..++.. .... .++.. ++.+++.|+.++ .+.+||+.. .+|...++
T Consensus 247 ---~~~p~~----r~~~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~ 295 (308)
T 1zgk_A 247 ---APMKHR----RSAL-GITVH--QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVTR 295 (308)
T ss_dssp ---CCCSSC----CBSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEE
T ss_pred ---CCCCCC----ccce-EEEEE--CCEEEEEcCcCCCcccceEEEEcCCC--CEEeecCC
Confidence 122222 0111 12222 468888888653 577888854 46876643
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.052 Score=57.41 Aligned_cols=235 Identities=11% Similarity=0.000 Sum_probs=116.3
Q ss_pred CCCEEEEEE-CC-----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC-----CcEEEEeCCCC
Q 001367 407 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 475 (1091)
Q Consensus 407 dg~~las~~-~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~ 475 (1091)
++..++.|+ .+ ..+.+||+.+++-.. ...+...... ..+...+++ +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~--~~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRY--VASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBS--CEEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhcc--ccEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666665 32 358888887754211 1111111111 112223455 66667654 46899998877
Q ss_pred c---eeEE--ecCCCcceEEEeecccCCceEEEEEecCC-----eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEE
Q 001367 476 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 476 ~---~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
+ -... +.........+.+ ++.+++.|+.++ .+.+||+.+.+-...-..........+..-+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3222 1111111111222 456777776543 577888766543222111111111111222666666
Q ss_pred EEecCCC-CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCC
Q 001367 546 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 546 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~ 619 (1091)
.++.++. ....+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 6654322 13458899988876544321111 1112222332 45566666643 46899999988765543322
Q ss_pred CCCCCCceEEEccCCCEEEEEECC-----CeEEEEECCCCC
Q 001367 620 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 655 (1091)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 655 (1091)
.. .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 22 11222223367777777654 457888887653
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.19 Score=53.00 Aligned_cols=235 Identities=10% Similarity=-0.045 Sum_probs=116.0
Q ss_pred eEEEEEcCC--CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC----CEEE
Q 001367 348 TLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK----HIVQ 421 (1091)
Q Consensus 348 ~llasg~~d--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~i~ 421 (1091)
.|++.|+.+ ..+.+||..+++-..... +......-.++.+ +++.++.|+.+ ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-----------------~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 73 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRC-----------------PFEKRRDAACVFW--DNVVYILGGSQLFPIKRMD 73 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCC-----------------CSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCC-----------------CCcccceeEEEEE--CCEEEEEeCCCCCCcceEE
Confidence 466777653 568888888765432111 1111111222222 67777777754 5788
Q ss_pred EEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC------CcEEEEeCCCCceeEEecCC--CcceEEEee
Q 001367 422 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSRTYSFEGH--GAPVYSLCP 493 (1091)
Q Consensus 422 iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~ 493 (1091)
+||+.+++-.. ...+......-..+. -+++ +++.|+.+ ..+.+||..+.+-...-... ...-..+.+
T Consensus 74 ~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 74 CYNVVKDSWYS-KLGPPTPRDSLAACA--AEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA 148 (306)
T ss_dssp EEETTTTEEEE-EECCSSCCBSCEEEE--ETTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEeCCCCeEEE-CCCCCccccceeEEE--ECCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence 89988764221 111111111112222 2555 56666654 46889998877543221111 111111222
Q ss_pred cccCCceEEEEEec---------CCeEEEEecCCCCceeeecCCCCcE-EEEEEcCCCCEEEEEecCCC-CceEEEEEec
Q 001367 494 HAKENIHFIFSISV---------DGKIKAWLYDSLGARVDYDAPGLGC-TRMAYSANGRRLFSCGTSKE-GESFLVEWNE 562 (1091)
Q Consensus 494 ~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i-~~~~~s~d~~~l~~~~~~~~-~~~~i~iwd~ 562 (1091)
++.+++.|+. -..+.+||+.+..-...-....... .+++. -+++.++.++.+.. ....+.+||+
T Consensus 149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~ 223 (306)
T 3ii7_A 149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDI 223 (306)
T ss_dssp ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEET
T ss_pred ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeC
Confidence 4466666654 3447788887654222211111111 12222 25666666654321 1245889999
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeEE
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLT 614 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~ 614 (1091)
.+.+-...-.... ......++.+ ++..++.|+.+ ..+.+||..+.+...
T Consensus 224 ~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 224 KLNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TTTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 8875433211111 1122333333 55666667643 568899998876543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.83 Score=48.67 Aligned_cols=208 Identities=10% Similarity=0.037 Sum_probs=114.9
Q ss_pred ccEEEEEECCCCCEEEEEE------------CCCEEEEEEeeCCc-ccceeEEEec-----cccCeeEEEEcC--CCCce
Q 001367 397 VSVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGS-DARQQLEIDA-----HVGNVNDLAFSA--PCKQI 456 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~~-~~~~~~~~~~-----h~~~v~~~~~s~--d~~~~ 456 (1091)
...-.++..|+|..+++++ .+|.|.++|..+.. ..+.+ .+.+ .......+.+.+ ++...
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3455667888886666652 68899999987432 12222 3333 234566777765 45432
Q ss_pred EEEEeeC--CCcEEEEeCCCCce----eEEecCC-CcceEEEeecccCCceEEEEEe-----------------cCCeEE
Q 001367 457 SVITCGD--DKTIKVWDAVTGSR----TYSFEGH-GAPVYSLCPHAKENIHFIFSIS-----------------VDGKIK 512 (1091)
Q Consensus 457 ~l~s~~~--d~~i~iwd~~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~-----------------~dg~i~ 512 (1091)
++++-.. +.+|.+|++..+.. +.++.+. -...+.+.+. ++|.+.++.. ..|.|.
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 3333333 56788887765322 2334332 2345677774 3566666543 124444
Q ss_pred EEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC-cee--eEEEecccccccceEEEEEcC-
Q 001367 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT- 588 (1091)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~v~~~~- 588 (1091)
.+|. .+.. .....-...+.++|+||++.++.+.. ....|+.|++.. ++. .+.+. . ......+++.+
T Consensus 207 r~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e 276 (355)
T 3sre_A 207 YYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPV 276 (355)
T ss_dssp EECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTT
T ss_pred EEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCC
Confidence 4443 3222 22222234678999999999887754 256799998863 332 22331 1 25677889999
Q ss_pred CCCEEEEEeCC-CeEEEEECC--CCeeEEEEe
Q 001367 589 AKDQILAAGDD-HVIKIWDMN--KVQLLTTID 617 (1091)
Q Consensus 589 ~~~~l~~~s~d-g~i~iwd~~--~~~~~~~~~ 617 (1091)
+|+..+++..+ +.|..|+.. .+..+..+.
T Consensus 277 ~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 277 TGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp TCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 58877766533 344444443 234444443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.022 Score=54.90 Aligned_cols=183 Identities=8% Similarity=-0.012 Sum_probs=97.5
Q ss_pred CCcEEEEEeCCCeEEEEeccCcce-----eeeeccc--cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee----e
Q 001367 854 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----C 922 (1091)
Q Consensus 854 ~~~~la~g~~dg~i~iwd~~~~~~-----~~~l~~h--~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~----~ 922 (1091)
.+.+|.+..+| +++.=...++.. ..+..++ -..++.++|+|+|.+.+. .+|.+.--+..+..... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34566767777 666655554431 1112223 247889999999997776 66754444433211100 0
Q ss_pred eeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceee-----eee-cCCccCEEEEEEeeCCCEEEEEE
Q 001367 923 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-----QWF-PISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 923 ~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~-----~~~-~~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
..+-. .+.. .-.++.|.|+|.+.++ .||.|+-++-.+...-. ... ..--..+..|.|.|+|.+.++.
T Consensus 80 t~IG~-~Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 80 KKIGN-GGWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp EEEEC-SCGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cEecc-cccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 01100 0111 1368999999999998 77999888764322110 001 1112567999999999877765
Q ss_pred cCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCc
Q 001367 997 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1053 (1091)
Q Consensus 997 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~ 1053 (1091)
|+.++-+..+++....-+.....+.. ....++.+ +.|.| ++.+.++. +|.
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~g~--~g~~~yr~-l~f~~-~G~l~~v~--~g~ 202 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKIGQ--GGWDTFKF-LFFSS-VGTLFGVQ--GGK 202 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEES--SSGGGEEE-EEECT-TSCEEEEE--TTE
T ss_pred -CCcEEecCCCCCCCcccccccceecc--CCcceEEE-EEECC-CCcEEEEe--CCe
Confidence 88765444443321111110111111 13445555 44888 35555544 663
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.5 Score=50.37 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=92.9
Q ss_pred CeEEEEEcCCCCcEEEEE------------eCCCeEEEEeccCc--cee-eeecc-----ccCCeEEEEECC--CCC-EE
Q 001367 844 TATSLAFNPHDNNVIAIG------------MDDSTILIYNARSS--EVI-SKLEG-----HSKRVTGLVFSD--ALN-IL 900 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g------------~~dg~i~iwd~~~~--~~~-~~l~~-----h~~~V~~l~~sp--dg~-~l 900 (1091)
....++..| +|..++++ ..+|.|.++|..+. +.. ..+.+ .......+.+.+ +|. +|
T Consensus 51 G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345566777 66554443 26899999998742 221 12222 234667777755 454 34
Q ss_pred EEE-eC--CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe----c--------------CeEE
Q 001367 901 VSS-GG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----E--------------THLA 959 (1091)
Q Consensus 901 as~-s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~----d--------------~~i~ 959 (1091)
..+ .. +.+|.+|+++..... ...+....+..- .....+.+.++|.+.++.. | +.|.
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCE-EEEEeccccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 444 22 567888888764322 233444444322 3578999999999888742 1 3444
Q ss_pred EEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEE-cCCcEEEEeCCC
Q 001367 960 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASN 1008 (1091)
Q Consensus 960 vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~-~dg~v~iwd~~~ 1008 (1091)
-||. ++ +..... .-.....++||||++.|+.+. ..+.|..|++..
T Consensus 207 r~d~--~~-~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 207 YYSP--ND-VRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EECT--TC-CEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EEEC--Ce-EEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 4444 32 222221 234678899999998877665 467899999864
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.11 Score=54.76 Aligned_cols=233 Identities=12% Similarity=0.043 Sum_probs=113.4
Q ss_pred CCEEEEEECC----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC-----CcEEEEeCCCCcee
Q 001367 408 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT 478 (1091)
Q Consensus 408 g~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~~~ 478 (1091)
+..++.|+.+ ..+..||+.+++-.. ...+......-..+. -+++ +++.|+.+ ..+.+||..+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVY--MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE--ETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEE--ECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555533 357888887754211 111111111111122 2455 66667654 35889998876533
Q ss_pred EEe--cCCCcceEEEeecccCCceEEEEEecCC-----eEEEEecCCCCceeeecCCCCc-EEEEEEcCCCCEEEEEecC
Q 001367 479 YSF--EGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 479 ~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~-i~~~~~s~d~~~l~~~~~~ 550 (1091)
..- .........+.+ ++.+++.|+.++ .+.+||+.+.+-...-...... -.+++. -+++.++.++.+
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 165 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYD 165 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEE
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCC
Confidence 221 111111112222 456777777553 4677777654422221111111 112222 356666666543
Q ss_pred CCC---ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCCCCC
Q 001367 551 KEG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGL 622 (1091)
Q Consensus 551 ~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~ 622 (1091)
... ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~- 241 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC- 241 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-
Confidence 322 3458899998876543321111 1122222222 45666666643 4689999988776544332221
Q ss_pred CCCceEEEccCCCEEEEEECC-----CeEEEEECCCCC
Q 001367 623 PENPRICFNKNGTLLAVIANE-----NRIKILETPESN 655 (1091)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 655 (1091)
.....+..-++++++.|+.+ ..+.+||..+..
T Consensus 242 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 242 -RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 11222222367777777654 347888887663
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.50 E-value=1.1 Score=47.44 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=58.5
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEEccCcee------------------EEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001367 803 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGM 862 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~~~~~la~g~ 862 (1091)
....++|.|+|.+.++-. ++.-.|--+..+.. +..+..+......++|.. +.+++..-
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence 356789999988776653 33223332232221 111221223556788874 55666566
Q ss_pred CCCeEEEEeccCcce----eeeeccccCCeEEEEECCCCCEEEEEe
Q 001367 863 DDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 904 (1091)
Q Consensus 863 ~dg~i~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~las~s 904 (1091)
..+.|....+..+.. ...+.+..+++..|+..|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 666777777765432 233445557899999999998777654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.19 Score=62.30 Aligned_cols=233 Identities=13% Similarity=0.121 Sum_probs=142.2
Q ss_pred EEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc-ceeeeeccc
Q 001367 806 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGH 884 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h 884 (1091)
+.-.+|..+.+|.-.+.++.|||+++...++.+.-+ ..|.--.|-. .+.|+..+ +..|+-|++... .++..+.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 455788888888888889999999988877776643 3455556653 34566555 557999999742 444555545
Q ss_pred ----cCCeEEEEECCCCCEEEEEe-------CCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEE--cC-CCCEE
Q 001367 885 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF--HK-DQTRF 950 (1091)
Q Consensus 885 ----~~~V~~l~~spdg~~las~s-------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f--s~-dg~~l 950 (1091)
...|..-..+++.++++..| -.|.+.+|..+.+ .-+..+||.. ....+.. .+ ....+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------~sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------cchhhhHhHh---hhheeccCCCCCCceEE
Confidence 45677788899999987544 3478889998873 3455566654 1111211 11 12233
Q ss_pred EEEe----cCeEEEEEcCCc---ce------eeeeecC--CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEe
Q 001367 951 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 951 a~~~----d~~i~vwd~~~~---~~------~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~ 1015 (1091)
+-+. .++++|-++... .. +..++++ -..-..++..|+.-..+...+.-|.|.++|+.+|..+..-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 3232 268888887543 11 1111111 1333445677777777778889999999999999887443
Q ss_pred ecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 1016 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1016 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
+ .++..|... +.++. ..-+++....|.|.--.+.+.
T Consensus 297 r--------is~~~iF~~--~~~~~-~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 297 R--------ISGETIFVT--APHEA-TAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred c--------ccCCceEEe--ccCCC-CCceEEEcCCceEEEEEEccc
Confidence 3 112333322 22222 233555557888777776553
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.43 E-value=1.6 Score=48.42 Aligned_cols=113 Identities=16% Similarity=0.102 Sum_probs=77.1
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEEccCcee-------------EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 001367 803 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 867 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i 867 (1091)
..-.+-++|||+++++++ +.++.++|+.+... ..... ........+|.+ +|....+-.-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 445678999999999998 68899999885221 12222 334567899999 78666777789999
Q ss_pred EEEeccCc----------ceeeeeccccCCeEEEEE------CCCCCEEEEEe---CCCc----------EEEEEcCCCc
Q 001367 868 LIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQ----------IFVWDVDGWG 918 (1091)
Q Consensus 868 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------spdg~~las~s---~Dg~----------i~vwd~~~~~ 918 (1091)
.-|++... ..+..+.-|-. +-.+.- .|||++|++.. .|+. -.+.|++..+
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 99999763 34455554543 222332 57999999874 4554 3677776544
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.19 Score=53.40 Aligned_cols=230 Identities=10% Similarity=-0.022 Sum_probs=112.0
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC-----C------CcEEEEeCCCCceeE
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY 479 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-----d------~~i~iwd~~~~~~~~ 479 (1091)
++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||..+++-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 33444 568899988865321 22222222233333344566 5666663 1 127788988765322
Q ss_pred EecCCCcceE--EEeecccCCceEEEEEecC--------CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 480 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 480 ~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
+.....+.. +++. . ++.+++.|+.+ ..+.+||..+.+=...-..+.......+...+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 211111111 1111 1 44666776643 34788887765322211111111111122245666666654
Q ss_pred CC--CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEeCCCCC
Q 001367 550 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL 622 (1091)
Q Consensus 550 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~ 622 (1091)
.. .....+.+||..+.+-...-.... ......++.+ +++.++.|+.++ .+.+||+.+.+....-.....
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 11 123458899988875433221111 1112222222 556666676543 588999988766554332222
Q ss_pred CCCceEEEccCCCEEEEEECC--------------CeEEEEECCCCC
Q 001367 623 PENPRICFNKNGTLLAVIANE--------------NRIKILETPESN 655 (1091)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~ 655 (1091)
.....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 11222222356777777653 246778877663
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.31 Score=52.75 Aligned_cols=240 Identities=12% Similarity=0.043 Sum_probs=118.1
Q ss_pred CCCEEEEEe--CCeEEEEEccC----ceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeC-C---------CeEEEEeccC
Q 001367 812 NDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNARS 874 (1091)
Q Consensus 812 dg~~la~~~--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~-d---------g~i~iwd~~~ 874 (1091)
++++++.|+ ...+.+||..+ ++.+..+. .......++.+ ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 667767665 46799999863 33333322 11112222233 5677777776 2 3688999987
Q ss_pred ccee--eeec-cccCCeEEEEECCCCCEEEEEeCC---------------------------------------CcEEEE
Q 001367 875 SEVI--SKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFVW 912 (1091)
Q Consensus 875 ~~~~--~~l~-~h~~~V~~l~~spdg~~las~s~D---------------------------------------g~i~vw 912 (1091)
.+-. ..+. .....-.++. .++++++.|+.+ ..+.+|
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred CcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 6532 2222 1111122222 577888888865 468899
Q ss_pred EcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e------cCeEEEEEc--CCcceeeeeecCC-ccCEEE
Q 001367 913 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQWFPIS-SVPISQ 982 (1091)
Q Consensus 913 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~------d~~i~vwd~--~~~~~~~~~~~~h-~~~v~~ 982 (1091)
|..+.+-.....+..... .-.+++. -++++++.| . ...+.+||+ .+.+....-.... ......
T Consensus 174 d~~~~~W~~~~~~p~~~~------~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 174 DPSTQQWSYAGESPWYGT------AGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp ETTTTEEEEEEECSSCCC------BSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred eCCCCcEEECCCCCCCCc------ccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 998866433221111100 0022232 355665553 2 235777886 4443322111111 111122
Q ss_pred EEEeeCCCEEEEEEcC----------------------CcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCC
Q 001367 983 ATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1040 (1091)
Q Consensus 983 v~fs~dg~~l~t~~~d----------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1040 (1091)
.+...+++.++.|+.+ ..+.+||+.+.+.... ..++... ....++.+
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~r----~~~~~~~~--- 315 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQGR----AYGVSLPW--- 315 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSCC----BSSEEEEE---
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCCc----ccceeEEe---
Confidence 2344577777777743 2578899988765532 1223221 11112223
Q ss_pred CCCeEEEEecCCc----EEEEecCCCCCCcccCCCCcc
Q 001367 1041 KPTQFAVGLTNGE----VYVIEPNEPGDTWAVLPPDEI 1074 (1091)
Q Consensus 1041 d~~~l~~g~~dg~----v~~w~~~~~~~~~~~~~~~~~ 1074 (1091)
++.+++.||.++. =-+|-+.-...+|....|...
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~ 353 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHH 353 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC----
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccc
Confidence 4789999997642 135544445677888877653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.096 Score=50.57 Aligned_cols=145 Identities=9% Similarity=0.023 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce------eeee--ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~------~~~l--~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
.++.++|+| ++.+.++ .+|.++-.+..++.. -..+ .+... -.++.|.|+|.+.++ .||.|+-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 667999999 8887776 778877777655221 0111 01112 478999999998887 56988777653
Q ss_pred CCceeeee--eeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCccee-----eeeec-CCccCEEEEEEee
Q 001367 916 GWGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----KQWFP-ISSVPISQATFSC 987 (1091)
Q Consensus 916 ~~~~~~~~--~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~-----~~~~~-~h~~~v~~v~fs~ 987 (1091)
+....... ....-.+.-. .+..+.|.|+|.+-++. ++.++-....++... ..... +....-+.+.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 32211100 0011111111 47899999999999998 888654433322211 11111 2233445577888
Q ss_pred CCCEEEEEEcCCc
Q 001367 988 DCRMVFTSFVDGT 1000 (1091)
Q Consensus 988 dg~~l~t~~~dg~ 1000 (1091)
+|...++. +|.
T Consensus 192 ~G~l~~v~--~g~ 202 (236)
T 1tl2_A 192 VGTLFGVQ--GGK 202 (236)
T ss_dssp TSCEEEEE--TTE
T ss_pred CCcEEEEe--CCe
Confidence 88877655 663
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.09 Score=56.35 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=80.2
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceee-------eceeEEeccccccceeeeeecCCCccEEEEEECC--
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-------RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-- 406 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-- 406 (1091)
+|..+..||+|++ ||..+ +.+|.|-.+..+..... ...+.|.++.. ......+|..+-|+|
T Consensus 67 ~i~qlvlSpsG~l-LAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~--------~~~~~s~I~qVlWHPl~ 136 (452)
T 3pbp_A 67 DTFHVISSTSGDL-LCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE--------EVGPKSSIKKVLFHPKS 136 (452)
T ss_dssp TTCEEEECTTSSE-EEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC--------C--CCCCEEEEEECTTB
T ss_pred ceeEEEECCCCCE-EEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCc--------ccCCCCceeEEEecccc
Confidence 7888999999995 45543 37899999875432221 01112222110 011467899999999
Q ss_pred -CCCEEEEEECCCEEEEEEeeCCcccceeEEEe---------ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
.+..|++-..|++|++||+....... . .+. .....|.+++|.+++-.+++++....|.|+-.-
T Consensus 137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P-~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 137 YRDSCIVVLKEDDTITMFDILNSQEKP-I-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp GGGCEEEEEETTSCEEEEETTCTTSCC-E-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CCCCeEEEEecCCEEEEEEcccCCCCC-c-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 46689999999999999998633211 1 222 223568889999888766666666777766543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.73 Score=48.80 Aligned_cols=224 Identities=14% Similarity=0.123 Sum_probs=116.1
Q ss_pred CCeEEEEEccCceeEE-EecCCCCCeEEEEEcCCCCcEEEEEeC----CC-------eEEEEeccCccee--eeeccccC
Q 001367 821 GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD----DS-------TILIYNARSSEVI--SKLEGHSK 886 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~la~g~~----dg-------~i~iwd~~~~~~~--~~l~~h~~ 886 (1091)
...+..||..+.+-.. .+..+.......+... ++.+++.|+. ++ .+..||..+.+-. ..+.....
T Consensus 23 G~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 101 (318)
T 2woz_A 23 DTAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC 101 (318)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBC
T ss_pred ccceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccc
Confidence 3458899988776433 2222222233333444 6778888873 12 2778888776532 22222111
Q ss_pred CeEEEEECCCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e-c--
Q 001367 887 RVTGLVFSDALNILVSSGGD-------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E-- 955 (1091)
Q Consensus 887 ~V~~l~~spdg~~las~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~-d-- 955 (1091)
.-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+ +... ....+...++++.+.| . +
T Consensus 102 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r------~~~~~~~~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 102 LFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL--PIKV------YGHNVISHNGMIYCLGGKTDDK 171 (318)
T ss_dssp SCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC--SSCE------ESCEEEEETTEEEEECCEESSS
T ss_pred ccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC--CCcc------cccEEEEECCEEEEEcCCCCCC
Confidence 1222223 67777778764 2478888887653332111 1111 1112222566666663 2 1
Q ss_pred ---CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceEEEeecccccCCCCcc
Q 001367 956 ---THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSC 1027 (1091)
Q Consensus 956 ---~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 1027 (1091)
..+.+||..+.+....-..... .....+..-+++.++.|+.+ ..+.+||+.+.+.... ..++...
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~r-- 244 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTP-RSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM----TEFPQER-- 244 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC----CCCSSCC--
T ss_pred CccceEEEEcCCCCEEEECCCCCCC-cccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC----CCCCCcc--
Confidence 3599999988764432111111 11111223467777877754 3477899888765432 1222221
Q ss_pred cccceeEEEeCCCCCCeEEEEecC--------------CcEEEEecCCCCCCcccC
Q 001367 1028 LHVYPHAIAAHPLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVL 1069 (1091)
Q Consensus 1028 ~~v~~~~~~~~p~d~~~l~~g~~d--------------g~v~~w~~~~~~~~~~~~ 1069 (1091)
....++.. ++.+++.|+.+ ..+.+||+.. .+|...
T Consensus 245 --~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~~ 293 (318)
T 2woz_A 245 --SSISLVSL---AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK--KEWAGM 293 (318)
T ss_dssp --BSCEEEEE---TTEEEEECCBCCBC----CCBCCBCCCEEEEETTT--TEEEEE
T ss_pred --cceEEEEE---CCEEEEECCeeccCCCCceeccceeeeEEEEeCCC--CEehhh
Confidence 11111222 36788888865 3577788754 468776
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.05 Score=57.56 Aligned_cols=201 Identities=9% Similarity=0.030 Sum_probs=108.5
Q ss_pred cEEEEEeCCCeEEEEeccCcceeeeeccc-cCCeEEEEE--CC-CCCEEEEE-eCCCcEEEEEcCCCceeeeeeeeccCC
Q 001367 856 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 930 (1091)
Q Consensus 856 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h-~~~V~~l~~--sp-dg~~las~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 930 (1091)
.++++++.||.|+-.|..+|+.+.++... ..++....- .+ ++..++.. +.||.|..++..+|...-...+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999998887654 122222110 01 33334333 589999999988875332111111111
Q ss_pred CcCCCCCceE---E------EEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccC------EEEEEEe-----eCCC
Q 001367 931 VMTLAPSETH---I------QFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----CDCR 990 (1091)
Q Consensus 931 ~~~~~~~i~~---l------~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~------v~~v~fs-----~dg~ 990 (1091)
.. ++.. . ..+.+|..++.+.++++...|+.+|+.+..+..+.... ..+.... ..+.
T Consensus 91 ~S----P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 TS----PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp TC----SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred cc----ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 00 1110 0 01245555555889999999999999998865442111 1111111 1235
Q ss_pred EEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCCCc
Q 001367 991 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1066 (1091)
Q Consensus 991 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~~ 1066 (1091)
.|+.+..+..+.+.+ .+|+ +-......+.+.... ..+.. ....+. |+.. ++++.||.|..+|...+...|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccc-ccccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777766 4453 222211122221100 00000 000111 3444 568899999999998888889
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.68 E-value=2.7 Score=44.52 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=70.6
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..+.++...-...+.++|.|||+ ++++-...|.|++++..+++......+ . .+..........|+|
T Consensus 22 ~~~~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~------------~-~v~~~g~~GllGia~ 87 (347)
T 3das_A 22 KVLRTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV------------P-GVSPSGEGGLLGIAL 87 (347)
T ss_dssp EEEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC------------T-TCCCBTTBSEEEEEE
T ss_pred ceeEEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc------------C-ceeecCCCCceeeEe
Confidence 34455555555899999999998 667665579999998766653211000 0 012234567899999
Q ss_pred CCC---CCEEEEE-E--CCCEEEEEEeeCCc----c---cceeE-EEe-ccccCeeEEEEcCCCCceEEEEee
Q 001367 405 SPD---GSLLGVA-Y--SKHIVQLYAYHGGS----D---ARQQL-EID-AHVGNVNDLAFSAPCKQISVITCG 462 (1091)
Q Consensus 405 spd---g~~las~-~--~d~~i~iwd~~~~~----~---~~~~~-~~~-~h~~~v~~~~~s~d~~~~~l~s~~ 462 (1091)
+|| +.+|.+. + .++.|.-|.+..+. . .+.+. .+. +....-..|+|.|||. +.++.+
T Consensus 88 ~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 88 SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 996 3444433 2 34556666665421 1 11111 122 1122356799999997 555543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.61 Score=49.44 Aligned_cols=224 Identities=10% Similarity=0.005 Sum_probs=106.3
Q ss_pred EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC----CC-------cEEEEeCCCCceeEE--ecCCC
Q 001367 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG 485 (1091)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~----d~-------~i~iwd~~~~~~~~~--~~~~~ 485 (1091)
.+..||..+++-.. ..+..........+...+++ +++.|+. ++ .+.+||..+.+-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37888888765322 12221112222333345566 6666662 11 177888877654321 11111
Q ss_pred cceEEEeecccCCceEEEEEecC-------CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC--CceE
Q 001367 486 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 556 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~--~~~~ 556 (1091)
.....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.++.... ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11111222 45677777754 24677777654322221111111111122246666666654211 1345
Q ss_pred EEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
+.+||+.+.+-...-.... ......++.+ ++..++.|+.+ ..+.+||+.+.+....-..... .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876443322111 1112222222 45666666532 3577899888765443222211 11212223
Q ss_pred cCCCEEEEEECC--------------CeEEEEECCCCC
Q 001367 632 KNGTLLAVIANE--------------NRIKILETPESN 655 (1091)
Q Consensus 632 ~~~~~l~~~~~d--------------g~i~iwd~~~~~ 655 (1091)
-++++++.|+.+ ..+.+||..+.+
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 356677776643 357778877653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.49 Score=58.83 Aligned_cols=236 Identities=11% Similarity=0.082 Sum_probs=134.1
Q ss_pred EEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEE
Q 001367 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1091)
Q Consensus 341 ~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i 420 (1091)
-.+|..+ ++|.-. ..++.|+|+++...+.... ...+|..=.|-.+...-+++ +..|
T Consensus 72 IMnP~~~-iiALra-g~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~~~l~lVT--~~aV 127 (1630)
T 1xi4_A 72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLNTVALVT--DNAV 127 (1630)
T ss_pred ccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCCCeeEEEc--CCeE
Confidence 3466666 555543 5889999999988776532 22467766776555443333 4569
Q ss_pred EEEEeeCCcccceeEEEecc----ccCeeEEEEcCCCCceEEEEee------CCCcEEEEeCCCCceeEEecCCCcceEE
Q 001367 421 QLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1091)
Q Consensus 421 ~iwd~~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 490 (1091)
.-|++.+...... .+..| ...|..-.-+++.+++ +++|= -.|.+.+|..+.+ ..+.+.||.+....
T Consensus 128 yHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 128 YHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQ 203 (1630)
T ss_pred EEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhhe
Confidence 9999975432221 22233 3457777788999863 33332 3578889986644 34566777665555
Q ss_pred EeecccCCceEEEE-Eec---CCeEEEEecCCC---Cceee-----e-cC---CCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 491 LCPHAKENIHFIFS-ISV---DGKIKAWLYDSL---GARVD-----Y-DA---PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 491 ~~~~~~~~~~~l~s-~~~---dg~i~iwd~~~~---~~~~~-----~-~~---~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
+.+...+....+++ +.. .+.++|-++... ...+. + .. ...-..++..++.-..+...+. .
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~ 279 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 279 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----C
Confidence 44432222222333 222 268888888653 11110 1 11 1122346667776666666654 6
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1091)
|.+.++|+.++.++..-+-.. ..|...+......-+++....|.|.--.++...
T Consensus 280 G~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred ceEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 789999999998875544333 455544444444445555555555554444433
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.51 Score=49.78 Aligned_cols=187 Identities=10% Similarity=-0.001 Sum_probs=98.6
Q ss_pred CCCEEEEEeC----------CeEEEEEccCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEeccC
Q 001367 812 NDAYLFSASG----------GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARS 874 (1091)
Q Consensus 812 dg~~la~~~d----------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~i~iwd~~~ 874 (1091)
++++++.|+. ..+.+||..+.+-... +.........+.+ ++++++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence 5666665542 3588899877653322 2212122222333 56777777644 3688999887
Q ss_pred ccee--eeeccccCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC
Q 001367 875 SEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 947 (1091)
Q Consensus 875 ~~~~--~~l~~h~~~V~~l~~spdg~~las~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg 947 (1091)
.+-. ..+......-.++.+ ++++++.|+.+ ..+.+||+.+.+-.....+.. ... ....+.+ ++
T Consensus 147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~----~~~~~~~--~~ 216 (308)
T 1zgk_A 147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT--IRS----GAGVCVL--HN 216 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS--CCB----SCEEEEE--TT
T ss_pred CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC--ccc----cceEEEE--CC
Confidence 6432 222222222222333 67777777765 458899998865333211111 111 1122222 66
Q ss_pred CEEEEE-ec-----CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceE
Q 001367 948 TRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1012 (1091)
Q Consensus 948 ~~la~~-~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~ 1012 (1091)
++++.| .+ ..+.+||..+.+.......... .....+..-+++.++.|+.+ ..+.+||+.+.+..
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC-ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 666664 32 4699999988765432111111 11111222367777777754 35788888887655
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.014 Score=46.08 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhcc
Q 001367 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSS 59 (1091)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1091)
++|+.+-|++||...||.+++.+|.+|.+++.+ ...-..-+|.=+|..++.+-.+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 579999999999999999999999999998764 2223455666677777666443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.13 E-value=1.1 Score=49.84 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce--eeeecc------ccCCeEEEEECCC----CCEEEEEeC-----
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG------HSKRVTGLVFSDA----LNILVSSGG----- 905 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~--~~~l~~------h~~~V~~l~~spd----g~~las~s~----- 905 (1091)
.....|+|.| +|+++++-...+.|++++..+++. +..+.. ..+....|+|+|| +.+.++-+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 888777554445799888665543 222221 2356779999995 444444432
Q ss_pred -------CCcEEEEEcCCC--ceee-eeeee-ccCCCcCCCCCceEEEEcCCCCEEEEEec-------------------
Q 001367 906 -------DAQIFVWDVDGW--GIQT-CRSLQ-TPDGVMTLAPSETHIQFHKDQTRFLLVHE------------------- 955 (1091)
Q Consensus 906 -------Dg~i~vwd~~~~--~~~~-~~~~~-~~~~~~~~~~~i~~l~fs~dg~~la~~~d------------------- 955 (1091)
...|.-+++..+ .... ...+. ...+.. .....++|.|||.+.++..|
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p 182 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD---HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTP 182 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS---CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC---CCCCeEeECCCCeEEEEECCCCCCCcccccccccccccc
Confidence 234666665432 1111 12222 122111 14689999999998887322
Q ss_pred --------------CeEEEEEcCCcc-----------eeeeeecCCccCEEEEEEeeCCCEEEEE-EcCCcEEEEeCCCC
Q 001367 956 --------------THLAIYEAEELT-----------CLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1009 (1091)
Q Consensus 956 --------------~~i~vwd~~~~~-----------~~~~~~~~h~~~v~~v~fs~dg~~l~t~-~~dg~v~iwd~~~~ 1009 (1091)
+.|.-++.. +. ....+..+| .....++|.++|++.++- +.++.-.|.-+..|
T Consensus 183 ~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 183 TQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp CHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred ccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 234333432 32 223344454 457789999998865543 23444445444443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.12 E-value=1.8 Score=48.12 Aligned_cols=195 Identities=13% Similarity=0.136 Sum_probs=116.7
Q ss_pred CCCCEEEEEe--CCeEEEEEccCceeEEEecCC-CCCeEEEEEc--CCCCcEEEEEeC-------CCeE---------EE
Q 001367 811 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFN--PHDNNVIAIGMD-------DSTI---------LI 869 (1091)
Q Consensus 811 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s--~~~~~~la~g~~-------dg~i---------~i 869 (1091)
.||++|..-. +..|...++...++-+.+..+ ...+..+.|- | +..+++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 3789999887 577888999988887666543 4578888886 6 5566666653 2221 11
Q ss_pred E---eccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCC---------------cEEEEEcCC-------Cceeeee-
Q 001367 870 Y---NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQTCR- 923 (1091)
Q Consensus 870 w---d~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg---------------~i~vwd~~~-------~~~~~~~- 923 (1091)
| |..+.+...++.- .+..-.+...++|++.++.+.+. .+.++|+.. ++.....
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 2222222222111 12333456678888888776542 266666532 1111000
Q ss_pred -eeeccCCCc------------CCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcce-------------eeeeecC
Q 001367 924 -SLQTPDGVM------------TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI 975 (1091)
Q Consensus 924 -~~~~~~~~~------------~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~~-------------~~~~~~~ 975 (1091)
-+....+.. +.+.....+.++|||++++++ -+.++.|+|++.... ..+..
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 011111111 111345678999999999995 467899999885322 11111
Q ss_pred CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 976 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 976 h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
-.......+|.++|....|---|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 1456788999999965566668999999998764
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.97 E-value=1.7 Score=46.71 Aligned_cols=141 Identities=8% Similarity=-0.002 Sum_probs=66.7
Q ss_pred CeEEEEeccCcce--eeeeccccCCeEEEEECCCCCEEEEEeC------CCcEEEEEc--CCCceeeeeeeeccCCCcCC
Q 001367 865 STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGG------DAQIFVWDV--DGWGIQTCRSLQTPDGVMTL 934 (1091)
Q Consensus 865 g~i~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~las~s~------Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~ 934 (1091)
..+.+||..+.+- +..+......-.+++.. ++++++.|+. ...+.++|+ .+..-.....+.....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~---- 242 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG---- 242 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC----
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc----
Confidence 4789999987643 23332111110222222 5667777664 235777877 4433221111111111
Q ss_pred CCCceEEEEcCCCCEEEEE-ec----------------------CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCE
Q 001367 935 APSETHIQFHKDQTRFLLV-HE----------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 991 (1091)
Q Consensus 935 ~~~i~~l~fs~dg~~la~~-~d----------------------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~ 991 (1091)
.....+...++++++.| .+ ..+.+||..+.+....-.... .+....+...+++.
T Consensus 243 --~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i 319 (357)
T 2uvk_A 243 --VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ-GRAYGVSLPWNNSL 319 (357)
T ss_dssp --CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS-CCBSSEEEEETTEE
T ss_pred --cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC-CcccceeEEeCCEE
Confidence 11222334466666663 21 257899988766443211111 11112234467888
Q ss_pred EEEEEcCC------cEEEEeCCCCceEE
Q 001367 992 VFTSFVDG------TLSIHEASNLEVQC 1013 (1091)
Q Consensus 992 l~t~~~dg------~v~iwd~~~~~~~~ 1013 (1091)
++.|+.++ .|.++++++++...
T Consensus 320 ~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 320 LIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred EEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 88888653 35566888877663
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.92 E-value=1.8 Score=45.14 Aligned_cols=180 Identities=9% Similarity=0.060 Sum_probs=102.2
Q ss_pred cCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC--------------CeEEEEe
Q 001367 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--------------GKIKAWL 515 (1091)
Q Consensus 450 s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------------g~i~iwd 515 (1091)
+.+|.++++.....++.|...+.. |.....+... .+..+ ..++.+|+-+... ..|+..+
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~--~~~~i----~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND--TAMYI----NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE--EEEEE----EECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC--ceeeE----EEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 456775444333445667777744 3334444321 12222 2244555555432 3577777
Q ss_pred cCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE
Q 001367 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 595 (1091)
++..+........ +..+++++++|+....+.++...|+..++..... ..+..+. + ..++++++.|+-
T Consensus 95 ~dg~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~-----~--~~~~~~g~~iy~ 161 (302)
T 3s25_A 95 RNGHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHY-----L--FTCNTSDRYFYY 161 (302)
T ss_dssp TTSCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSC-----C--CCSEEETTEEEE
T ss_pred CCCCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCC-----c--eEeeEECCEEEE
Confidence 7666543333221 2367889999987752234567788888875543 3343332 1 346778888887
Q ss_pred EeC-CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC--CeEEEEECCCCC
Q 001367 596 AGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE--NRIKILETPESN 655 (1091)
Q Consensus 596 ~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d--g~i~iwd~~~~~ 655 (1091)
.+. ...|+.-++..+.....+.. . ....+.|++.+|+-.... ..|..-++....
T Consensus 162 t~~g~~~Iy~~~l~g~~~~~l~~~--~----~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 162 NNPKNGQLYRYDTASQSEALFYDC--N----CYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp ECTTTCCEEEEETTTTEEEEEECS--C----EEEEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred EeCCCceEEEEECCCCCEEEEeCC--C----ccceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 665 67888889887765444331 1 123466888888876654 356666665543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.1 Score=55.23 Aligned_cols=195 Identities=10% Similarity=0.021 Sum_probs=103.8
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCC-CcceEEEeecc-cCCceEEEEE-ecCCeEEEEecCCCCceeeecCC----C
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHA-KENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 529 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~ 529 (1091)
+++.++.||.|.-.|..+|+.+.++... ..++....-.. ..++..++.. +.||.+..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5788999999999999999999998654 12332221101 1133334343 68999999988766443322211 1
Q ss_pred CcEEE---EEE-----cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccc----cceEEEEEc-----CCCCE
Q 001367 530 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH----NSVSVVHFD-----TAKDQ 592 (1091)
Q Consensus 530 ~~i~~---~~~-----s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----~~v~~v~~~-----~~~~~ 592 (1091)
.++.. ..+ +..+..+++++. ++.++..|+.+|+.+..+....... ....|.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11111 000 013445666654 7789999999999998887532100 000111110 12356
Q ss_pred EEEEeCCCeEEEEECCCCeeEEE-----EeCCCCCCCC-ceEEEccCCCEEEEEECCCeEEEEECCCCCeec
Q 001367 593 ILAAGDDHVIKIWDMNKVQLLTT-----IDAGGGLPEN-PRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~-----~~~~~~~~~v-~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1091)
++.+..+..+.+.+ ++|+ +.. .........+ ..-..+.|+.+ ++++.||.|..+|..++..+.
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777666666665 3343 111 1100000000 00011234565 557889999999998887654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.16 E-value=3.7 Score=45.70 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=63.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCc--CCCCCceEEEEcCC---CCEEEEE--e----
Q 001367 886 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKD---QTRFLLV--H---- 954 (1091)
Q Consensus 886 ~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~fs~d---g~~la~~--~---- 954 (1091)
...++|+|.|||+++++-...+.|++++..++.... ......... .....+..++|+|| +.+|.++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 456799999999988865444568888765544322 111111110 01235779999996 5555542 2
Q ss_pred --------cCeEEEEEcCCc-------ceeee-eecCCccCEEEEEEeeCCCEEEEEEc
Q 001367 955 --------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 955 --------d~~i~vwd~~~~-------~~~~~-~~~~h~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
...|.-|+...+ +.+.. +..........|+|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666655322 11221 11122345788999999998777654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=93.00 E-value=9.6 Score=39.51 Aligned_cols=182 Identities=10% Similarity=0.060 Sum_probs=99.3
Q ss_pred EEEEcCCCceEEEEEcCC-------------CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 339 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 339 ~v~fspdg~~llasg~~d-------------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
+--++++|.+|..+...+ ..|+..++..++... +.. .. +..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence 345688998776666543 356666666654332 111 11 23678
Q ss_pred CCCCEEEEEE--CCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe
Q 001367 406 PDGSLLGVAY--SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 406 pdg~~las~~--~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1091)
+++++|+-.. .++ .|..-++.+.. .+ .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 344 44444554332 22 3444432 457888985 2334334678888887766544333
Q ss_pred cCCCcceEEEeecccCCceEEEEEecC--CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
.+ ... ..+.| ++.+|+-.... ..|..-+++...... +.. ..+ ..++|++++|..+.... ...|..
T Consensus 184 ~~---~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 22333 44455555433 245555555544332 222 223 34888999998764322 356777
Q ss_pred EecCCce
Q 001367 560 WNESEGA 566 (1091)
Q Consensus 560 wd~~~~~ 566 (1091)
.++....
T Consensus 251 ~~~DG~~ 257 (302)
T 3s25_A 251 VKNDGTG 257 (302)
T ss_dssp EETTSCC
T ss_pred EECCCCc
Confidence 7776544
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=4.5 Score=48.03 Aligned_cols=196 Identities=11% Similarity=0.109 Sum_probs=106.7
Q ss_pred CCCCEEEEEeC-----CeEEEEEccCceeEEEe--------cCCCCCeEEEEEcCCCCcEEEEEeCCC------eEEEEe
Q 001367 811 KNDAYLFSASG-----GVISLYIVMTFKTILTI--------MPPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 871 (1091)
Q Consensus 811 ~dg~~la~~~d-----g~i~iwd~~~~~~~~~~--------~~~~~~i~~l~~s~~~~~~la~g~~dg------~i~iwd 871 (1091)
.++..++.|+. +.+.+||..+.+-...- ......-..+.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 56666666652 45889998876433222 11112234444543 567778787543 588899
Q ss_pred ccCcce--eeeeccccCCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeeeeeee-ccCCCcCCCCCceEEEEcCC
Q 001367 872 ARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD 946 (1091)
Q Consensus 872 ~~~~~~--~~~l~~h~~~V~~l~~spdg~~las~s~Dg--~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~fs~d 946 (1091)
..+.+- +..+......- +++...++++++.||.++ .+.+||..+.......... .+... ....++.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCC
Confidence 887543 22222111111 223324788888888755 6899999886533221100 11111 12334666665
Q ss_pred -CCEEEEE-e--c-----CeEEEEEcCCcce------eeeee-cCCccCEEEEEEeeCCCEEEEEEcC--------CcEE
Q 001367 947 -QTRFLLV-H--E-----THLAIYEAEELTC------LKQWF-PISSVPISQATFSCDCRMVFTSFVD--------GTLS 1002 (1091)
Q Consensus 947 -g~~la~~-~--d-----~~i~vwd~~~~~~------~~~~~-~~h~~~v~~v~fs~dg~~l~t~~~d--------g~v~ 1002 (1091)
+++++.| . + +.+.+||..+... ..... ......-.+++...+++.++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5566664 2 2 3589999988772 11111 0111111123334447788888743 4599
Q ss_pred EEeCCCCceE
Q 001367 1003 IHEASNLEVQ 1012 (1091)
Q Consensus 1003 iwd~~~~~~~ 1012 (1091)
+||+.+....
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999998766
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=92.32 E-value=16 Score=40.45 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=35.6
Q ss_pred ccEEEEEECCCCC-EEEEEECCCEEEEEEeeCCcccceeEEEe-----c----cccCeeEEEEcCC
Q 001367 397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID-----A----HVGNVNDLAFSAP 452 (1091)
Q Consensus 397 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~-----~----h~~~v~~~~~s~d 452 (1091)
.....|+|.|||. .|.++...|.|++++.........+..+. + .......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4667899999996 55566788999999754321111111111 1 1356788999997
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.12 E-value=15 Score=39.75 Aligned_cols=260 Identities=11% Similarity=0.059 Sum_probs=122.4
Q ss_pred CCCeeEEEecC--CCCEEEEEeCC----eEEEEEccCc---eeEEE---ecC--------CCCCeEEEEEcCCC-CcEEE
Q 001367 801 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTF---KTILT---IMP--------PSPTATSLAFNPHD-NNVIA 859 (1091)
Q Consensus 801 ~~~v~~l~~s~--dg~~la~~~dg----~i~iwd~~~~---~~~~~---~~~--------~~~~i~~l~~s~~~-~~~la 859 (1091)
...|.++++.| ++.+.+.+..| .|... ...+ +.+.. +.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 66676666554 34332 1222 22221 111 11257789998733 44555
Q ss_pred EEeCCCeEEEEeccCcc---eeeeecc----------------ccCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCce
Q 001367 860 IGMDDSTILIYNARSSE---VISKLEG----------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI 919 (1091)
Q Consensus 860 ~g~~dg~i~iwd~~~~~---~~~~l~~----------------h~~~V~~l~~spd-g~~las~s~Dg~i~vwd~~~~~~ 919 (1091)
++...+.|...+ +.|+ .+..+.. ....|.+|.+.|. ...|..+..++.|...+-....
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~t- 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTD- 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSS-
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCC-
Confidence 566666555443 2222 2211110 1235789999873 3344444444434433222211
Q ss_pred eeeeeeec-cCC-CcC-----CCCCceEEEEcCC-CCEEEEEecCeEEEEEcCCcceeeeeecCC-c---cCEEEEEEee
Q 001367 920 QTCRSLQT-PDG-VMT-----LAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC 987 (1091)
Q Consensus 920 ~~~~~~~~-~~~-~~~-----~~~~i~~l~fs~d-g~~la~~~d~~i~vwd~~~~~~~~~~~~~h-~---~~v~~v~fs~ 987 (1091)
...+.. ... ... ....+.++++.|+ ...|.++..+.|...+- .++.-..+...- . ..+..+++.|
T Consensus 211 --W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 211 --WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp --CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred --ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 111111 000 000 0024788999986 35566665666655542 233222211111 1 3456788876
Q ss_pred C-CCEEEEEEc-----------CCcEEEEeCCC-CceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcE
Q 001367 988 D-CRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1054 (1091)
Q Consensus 988 d-g~~l~t~~~-----------dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v 1054 (1091)
. ...|.++.. ++...+|.... |+.-..+. ..++....-..+....++++|.++..|.+++.++.
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~- 364 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGE- 364 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSC-
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCe-
Confidence 3 333444432 23345565444 33322222 12232100011122346788865566777766665
Q ss_pred EEEecCCCCCCcccCC
Q 001367 1055 YVIEPNEPGDTWAVLP 1070 (1091)
Q Consensus 1055 ~~w~~~~~~~~~~~~~ 1070 (1091)
+|.-.+.+.+|....
T Consensus 365 -l~~S~D~G~tW~~~~ 379 (394)
T 3b7f_A 365 -IWASADEGEHWQCIA 379 (394)
T ss_dssp -EEEESSTTSBCEEEE
T ss_pred -EEEECCCCCCceEcc
Confidence 556667778897653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=3.3 Score=49.18 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=106.4
Q ss_pred CCcEEEEEeCC----CeEEEEeccCcceeeee--------ccccCCeEEEEECCCCCEEEEEeCCC------cEEEEEcC
Q 001367 854 DNNVIAIGMDD----STILIYNARSSEVISKL--------EGHSKRVTGLVFSDALNILVSSGGDA------QIFVWDVD 915 (1091)
Q Consensus 854 ~~~~la~g~~d----g~i~iwd~~~~~~~~~l--------~~h~~~V~~l~~spdg~~las~s~Dg------~i~vwd~~ 915 (1091)
++.+++.|+.+ ..+.+||..+++-...- ......-..+.+..++++++.||.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 56677777753 36888888876533211 11111222333333778888887543 47889998
Q ss_pred CCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecC--eEEEEEcCCcceeeeee----cCCccCEEEEEEeeC
Q 001367 916 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET--HLAIYEAEELTCLKQWF----PISSVPISQATFSCD 988 (1091)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~--~i~vwd~~~~~~~~~~~----~~h~~~v~~v~fs~d 988 (1091)
+.+......+... . .-.+++.-.++++++.| .++ .+.+||..+......-. +.....-..+.+..+
T Consensus 477 t~~W~~~~~~p~~--R-----~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 477 TREWSMIKSLSHT--R-----FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTEEEECCCCSBC--C-----BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCcEEECCCCCCC--c-----ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 8653322111111 1 12234443578887774 322 79999998876543321 111112233455554
Q ss_pred -CCEEEEEEc--C-----CcEEEEeCCCCce-----EEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecC----
Q 001367 989 -CRMVFTSFV--D-----GTLSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN---- 1051 (1091)
Q Consensus 989 -g~~l~t~~~--d-----g~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~d---- 1051 (1091)
++.++.|+. + ..+.+||+.+... -..+......+.. ...++... ++.+++.||.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~------~~~~~~~~--~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY------GSQIKYIT--PRKLLIVGGTSPSGL 621 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB------SCEEEEEE--TTEEEEECCBCSSCC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc------cceEEEeC--CCEEEEECCccCCCC
Confidence 667777775 2 3588999998872 1112111111111 11122222 26788888853
Q ss_pred ----CcEEEEecCCCCCCcccC
Q 001367 1052 ----GEVYVIEPNEPGDTWAVL 1069 (1091)
Q Consensus 1052 ----g~v~~w~~~~~~~~~~~~ 1069 (1091)
..+.++|+... +|...
T Consensus 622 ~~~~~~v~~yd~~t~--~W~~~ 641 (695)
T 2zwa_A 622 FDRTNSIISLDPLSE--TLTSI 641 (695)
T ss_dssp CCTTTSEEEEETTTT--EEEEC
T ss_pred CCCCCeEEEEECCCC--eEEEe
Confidence 46889998654 58744
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=91.01 E-value=30 Score=40.82 Aligned_cols=246 Identities=8% Similarity=0.010 Sum_probs=125.4
Q ss_pred EEEE-EcCCCceEEEEEcCCC----cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC-----ccEEEEEECCC
Q 001367 338 MSMD-FHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSPD 407 (1091)
Q Consensus 338 ~~v~-fspdg~~llasg~~dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~spd 407 (1091)
..+. ++||+++++++-|..| .++++|+.+++.+.. .|. . .... .....++|..+
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~--------------~~k~~~~~~~~~~~~~W~d~ 195 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-P--------------ITNSGKLLEGKFTYPTWINK 195 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-C--------------BCTTCCBCCEETCCEEEEET
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-c--------------ccccccccccccceeeEECC
Confidence 3345 8999997766655544 599999999987642 110 0 0000 01133467633
Q ss_pred CCEEEEE----------ECCCEEEEEEeeCCcccceeEEEeccccCe-eEEEEcCCCCce---EEEEeeCC---CcEEEE
Q 001367 408 GSLLGVA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQI---SVITCGDD---KTIKVW 470 (1091)
Q Consensus 408 g~~las~----------~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~~---~l~s~~~d---~~i~iw 470 (1091)
+..+++. +....|+.|.+.+...-. ...+.+....+ .....+++++.. .+++.+.+ ..+.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 274 (711)
T 4hvt_A 196 DTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYIL 274 (711)
T ss_dssp TEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEE
T ss_pred CEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEE
Confidence 3333331 112468888776653221 11344433332 345567777742 35554422 345666
Q ss_pred eCCC--CceeEEecCCCcceEEEeecccCCceEEEEE----------ecCCeEEEEecCCCC-------ceee-e-cCCC
Q 001367 471 DAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSLG-------ARVD-Y-DAPG 529 (1091)
Q Consensus 471 d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~-~-~~~~ 529 (1091)
|... ++ +..+....... +.. ..++.+++.. ...+.|...++.... .... + ....
T Consensus 275 ~~~~~~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (711)
T 4hvt_A 275 DTKYKNLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN 349 (711)
T ss_dssp ECSSSSCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT
T ss_pred cCCCCCCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC
Confidence 6543 33 22332221111 111 1133444422 246678888887631 2222 3 2234
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce-eeEE-EecccccccceEEEEEcCCCCEEEE-Ee---CCCeEE
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIK 603 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~-~s---~dg~i~ 603 (1091)
..+..+.+..+ ..+++... ++...+.++++.++. .... +.... ...+......+++..++. .+ .-+.+.
T Consensus 350 ~~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~ 424 (711)
T 4hvt_A 350 EVFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIY 424 (711)
T ss_dssp EEEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEE
T ss_pred CeEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEE
Confidence 46778888876 44444433 446678999987775 2333 32221 135666666677655444 33 346788
Q ss_pred EEECCCCe
Q 001367 604 IWDMNKVQ 611 (1091)
Q Consensus 604 iwd~~~~~ 611 (1091)
.+|+. ++
T Consensus 425 ~~d~~-~~ 431 (711)
T 4hvt_A 425 LWVKT-HE 431 (711)
T ss_dssp EECTT-SC
T ss_pred EEeCC-Cc
Confidence 88876 44
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=90.12 E-value=18 Score=36.96 Aligned_cols=222 Identities=13% Similarity=0.089 Sum_probs=109.1
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
.|..++....- .++. . ||.|..|-......+.. .......|..++...+-..++ .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------------p~~~~~~i~~ia~G~~hs~~l--~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------------PAATQSGVDAIAAGNYHSLAL--K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------------CGGGGSCCCEEEECSSEEEEE--E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------------CccCCCCEEEEEeCCCEEEEE--E
Confidence 56666655442 3344 3 78888887654333321 000123566666654433333 4
Q ss_pred CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecc
Q 001367 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1091)
||.|+.|-......+... ..-...|..++...+- .+.-. ||.|..|-......+.........|..++.-
T Consensus 80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G- 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG- 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence 888888876543322210 1112367777765442 33334 8999999755422221111123456666542
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
....++ -. ||.|..|-................|..++...+...++ . ++.++.|-......+..-..
T Consensus 150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~p~~-- 216 (282)
T 3qhy_B 150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTVPTE-- 216 (282)
T ss_dssp --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCCCGG--
T ss_pred --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCCCcc--
Confidence 222333 34 79999997655433322111123465555443332222 2 44588886543211111001
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
....|..++.... +.++-. ||.|+.|-...
T Consensus 217 -~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 217 -ALSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -GGSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred -cCCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 1235666665543 333334 89999996554
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=89.80 E-value=19 Score=36.77 Aligned_cols=183 Identities=10% Similarity=0.006 Sum_probs=98.3
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec
Q 001367 803 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 882 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 882 (1091)
.|..++...+...++ .+|.|..|-......+.....-...|..++... . ..+.-. ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~-~--hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA-W--ASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET-T--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC-C--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 566666654433333 388888887553222211111124677887764 2 333345 9999999765432222212
Q ss_pred cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEE
Q 001367 883 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 962 (1091)
Q Consensus 883 ~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd 962 (1091)
.....|..++...+.. ++ .. ||.|..|-........ .+.... ..|..++...+...++ .++.|+.|=
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-----~p~~~~---~~v~~i~~G~~hs~al--~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-----VPAEAQ---SGVDDVAGGIFHSLAL--KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-----CCGGGG---SSEEEEEECSSEEEEE--ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-----CceecC---CCeEEEEecCCEEEEE--ECCeEEEEE
Confidence 2345688887765432 33 33 7999999776522111 010001 2466676655544444 699999997
Q ss_pred cCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 963 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 963 ~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
....-.+.... .....|..|+...+-. ++. . ||.|+.|=...
T Consensus 205 ~n~~gqlg~p~-~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 205 DNRYKQTTVPT-EALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp CCTTSTTCCCG-GGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred CCCCCCCCCCc-ccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCC
Confidence 65433222111 1134566676554433 333 3 99999996554
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=88.99 E-value=27 Score=37.28 Aligned_cols=167 Identities=11% Similarity=0.115 Sum_probs=89.6
Q ss_pred cEEEEeCCCC--ceeEEecCC------CcceEEEeec-ccC----CceEE-EEEecCCeEEEEecCCCCceeeec----C
Q 001367 466 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE----NIHFI-FSISVDGKIKAWLYDSLGARVDYD----A 527 (1091)
Q Consensus 466 ~i~iwd~~~~--~~~~~~~~~------~~~v~~~~~~-~~~----~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~----~ 527 (1091)
.|.+||+.++ +.++++.-. ...+..+.+. ..+ ++.++ ++-+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888888 777666432 3456777776 211 12343 444456779999998776554331 1
Q ss_pred C--------------CCcEEEEEEcCC----CCEEEEEecCCCCceEEEEEecC-----Cc---eeeEEEecccccccce
Q 001367 528 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNES-----EG---AIKRTYQGLQLQHNSV 581 (1091)
Q Consensus 528 ~--------------~~~i~~~~~s~d----~~~l~~~~~~~~~~~~i~iwd~~-----~~---~~~~~~~~~~~~~~~v 581 (1091)
. ...+..++++|+ ++.|.....++ -.+|.+. .. ..++. .+.......-
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~ 277 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSVNTKELKQKGGKLNPEL-LGNRGKYNDA 277 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEEEHHHHSSTTCCCCCEE-EEECCTTCCE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEEEHHHhhCcchhhceEE-eeecCCCCCc
Confidence 1 126788999998 77777665432 1222222 11 11111 1222001223
Q ss_pred EEEEEc-CCCCEEEEEeCCCeEEEEECCC-C---eeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 582 SVVHFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 582 ~~v~~~-~~~~~l~~~s~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
..+++. .+|..+++--+...|..|+..+ . .....+...........+.+.++|.+.+
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv 339 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWF 339 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEE
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEE
Confidence 345665 5666666666888999999876 1 1223332222434455666655554333
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=87.41 E-value=29 Score=40.87 Aligned_cols=242 Identities=9% Similarity=0.002 Sum_probs=118.4
Q ss_pred EEE-ECCCCCEEEEE-ECC----CEEEEEEeeCCcccceeEEEe-cccc------CeeEEEEcCCCCceEEEEe------
Q 001367 401 RVV-WSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEID-AHVG------NVNDLAFSAPCKQISVITC------ 461 (1091)
Q Consensus 401 ~l~-~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~-~h~~------~v~~~~~s~d~~~~~l~s~------ 461 (1091)
.+. ++||+++++.+ |.. ..++++|+.+++.+... +. .-.. ....++|..++. ++++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~ 208 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNE 208 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCCCC
Confidence 344 88999988876 222 37999999998654321 11 0000 113457874443 34432
Q ss_pred ----eCCCcEEEEeCCCCc--eeEEecCCCcceE-EEeecccCCce---EEEEEecC---CeEEEEecCCCCc-eeeecC
Q 001367 462 ----GDDKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLGA-RVDYDA 527 (1091)
Q Consensus 462 ----~~d~~i~iwd~~~~~--~~~~~~~~~~~v~-~~~~~~~~~~~---~l~s~~~d---g~i~iwd~~~~~~-~~~~~~ 527 (1091)
+....|+.|.+-+.. -...+.+....+. +...+.++... .+++.+.+ ..+.+.+.+.... ...+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 123468888776542 2233443333332 22232333222 34544422 3355555543222 233332
Q ss_pred CCCcEEEEEEcCCCCEEEEEecC------CCCceEEEEEecCCce-------eeEE-EecccccccceEEEEEcCCCCEE
Q 001367 528 PGLGCTRMAYSANGRRLFSCGTS------KEGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQI 593 (1091)
Q Consensus 528 ~~~~i~~~~~s~d~~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~v~~~~~~~~l 593 (1091)
.... .+..+.++.+++....+ .-..+.|...++.++. ..+. +.... ...+..+.+..+ ..+
T Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 289 PSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVF 363 (711)
T ss_dssp CTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEE
T ss_pred CCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEE
Confidence 2221 12334455555533211 0125568888877642 1222 32222 356778888865 566
Q ss_pred EEEeCCCe--EEEEECCCCe-eEEE-EeCCCCCCCCceEEEccCCCEE-EEEEC---CCeEEEEECC
Q 001367 594 LAAGDDHV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTLL-AVIAN---ENRIKILETP 652 (1091)
Q Consensus 594 ~~~s~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~~l-~~~~~---dg~i~iwd~~ 652 (1091)
++...++. +.++++.++. .... +..... ..+.....++++..+ ++.+. -+.+..++..
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 66666664 6677776664 2233 333321 234555566666544 44333 3567777765
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=85.19 E-value=1.1 Score=40.03 Aligned_cols=56 Identities=14% Similarity=0.307 Sum_probs=44.7
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchh
Q 001367 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE 128 (1091)
Q Consensus 72 ~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~ 128 (1091)
++|.|+-+.||||+..|..++|..|+.+.-..+... .+.+++|..+.......+++
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~ 88 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENN 88 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCH
Confidence 899999999999999999999999999866666555 77788888777665554443
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=83.64 E-value=1.4 Score=40.26 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=46.5
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhc
Q 001367 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHEL 129 (1091)
Q Consensus 72 ~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 129 (1091)
++|.|+-+.||||+..|..++|..|+++.-..+.....+.+++|+.+.......+++.
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~ 109 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNET 109 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHH
Confidence 8999999999999999999999999998655555456677888887777655544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1091 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.004 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.003 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.0 bits (193), Expect = 3e-16
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 435
K+WD+ +N + + P+G+ +L+ +
Sbjct: 209 KLWDVREGMCRQT---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495
+ G + ++FS + + + DD VWDA+ R GH V L
Sbjct: 266 HDNIICG-ITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 496 KENIHFIFSISVDGKIKAW 514
+ + S D +K W
Sbjct: 323 DGM--AVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.5 bits (184), Expect = 4e-15
Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 11/150 (7%)
Query: 459 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK--AWLY 516
++ D + K+WD G +F GH + + ++C N + S D +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRA 257
Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
D +D G T +++S +GR L + W+ + G
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN----CNVWDALKADRAGVLAG--- 310
Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
N VS + + D +KIW+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.8 bits (182), Expect = 8e-15
Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 10/164 (6%)
Query: 753 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812
+ V + P L +S +L+ R G T + + + N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ----TFTGHESDINAICFFPN 237
Query: 813 DAYLFSASGG---VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 869
+ S + + TS++F+ ++ G DD +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296
Query: 870 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913
++A ++ L GH RV+ L +D + + D+ + +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.8 bits (156), Expect = 2e-11
Identities = 49/321 (15%), Positives = 94/321 (29%), Gaps = 31/321 (9%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
+TL + +M + LL+ + G +WD + + +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTN--KVHAIPLRSS------- 98
Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
V ++P G+ + +I +Y + G+ L
Sbjct: 99 ----------WVMTCAYAPSGNYVACGGLDNICSIYNLK--TREGNVRVSRELAGHTGYL 146
Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
+ ++T D T +WD TG +T +F GH V SL + S +
Sbjct: 147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV--SGAC 204
Query: 508 DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
D K W R + + + NG + +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-----CRLFDLRADQ 259
Query: 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
+ ++ V F + +LA DD +WD K +
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC-- 317
Query: 628 ICFNKNGTLLAVIANENRIKI 648
+ +G +A + ++ +KI
Sbjct: 318 LGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.3 bits (147), Expect = 2e-10
Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 8/155 (5%)
Query: 850 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 909
D + G D++ +++ R GH + + F N + DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 910 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-HLAIYEAEELTC 968
++D+ S +T + F K L ++ + +++A +
Sbjct: 251 RLFDLRADQELMTYSHDNIICGIT------SVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 969 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1003
+S + D V T D L I
Sbjct: 305 AGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.8 bits (138), Expect = 2e-09
Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 23/144 (15%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
QT S ++ F P + TG D
Sbjct: 220 QTFTGHESDINAICFFPNGNAFA--------TGSDD----------ATCRLFDLRADQEL 261
Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
T + + V +S G LL Y ++ + + H V+ L
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCL 318
Query: 448 AFSAPCKQISVITCGDDKTIKVWD 471
+ + T D +K+W+
Sbjct: 319 GVTDDGMAV--ATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.8 bits (138), Expect = 3e-09
Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 10/217 (4%)
Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
R + + H+ + + + + + ++ D + +WD+ T ++ ++ + V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLL--VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551
+ +++ +D + + V G T TS
Sbjct: 104 AYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
+ + E+ V + ++ D K+WD+ +
Sbjct: 162 GDTTCALWDIETGQQTTTFTG----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
T ICF NG A +++ ++
Sbjct: 218 CRQTFTGHESDINA--ICFFPNGNAFATGSDDATCRL 252
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.4 bits (137), Expect = 4e-09
Identities = 40/291 (13%), Positives = 94/291 (32%), Gaps = 11/291 (3%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+ + W D LL A + ++ + + I V A++ ++
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVA 113
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
+ +I G+ S E G Y + + I + S D W +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ + ++ + + R S ++ W+ EG ++T+ G
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSG----ACDASAKLWDVREGMCRQTFTG---H 225
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637
+ ++ + F + DD +++D+ Q L T + + F+K+G LL
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688
++ + + +++ + + L V G + +
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.0 bits (110), Expect = 8e-06
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 11/130 (8%)
Query: 824 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKL 881
L+ V T ++ F P + N A G DD+T + A +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 882 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 941
+ +T + FS + +L++ D VWD L D + + +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRV------SCL 318
Query: 942 QFHKDQTRFL 951
D
Sbjct: 319 GVTDDGMAVA 328
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.8 bits (182), Expect = 7e-15
Identities = 44/326 (13%), Positives = 94/326 (28%), Gaps = 55/326 (16%)
Query: 323 PKTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------- 370
P+ + + G SP + FHP ++++ + +WD +G
Sbjct: 5 PRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63
Query: 371 ------------FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418
+ + +V+ V P+G + A
Sbjct: 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123
Query: 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478
++++ H V + + I +C +D+T++VW T
Sbjct: 124 TIKMWEVQ---TGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECK 178
Query: 479 YSFEGHGAPVYSLCPHAKENI------------------HFIFSISVDGKIKAWLYDSLG 520
H V + + + F+ S S D IK W +
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238
Query: 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580
+ + + + G+ + SC + L W+ +T +
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNA---HEHF 291
Query: 581 VSVVHFDTAKDQILAAGDDHVIKIWD 606
V+ + F ++ D +K+W+
Sbjct: 292 VTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.4 bits (181), Expect = 9e-15
Identities = 42/309 (13%), Positives = 85/309 (27%), Gaps = 65/309 (21%)
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
+ H V + F + ++ +D TIKVWD TG + +GH V +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 497 ENIH----------------------------------------FIFSISVDGKIKAWLY 516
+ I S S D IK W
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
+ + + + +G + SC + + W + K + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ----TVRVWVVATKECKAELREHRH 186
Query: 577 QHNSVS-----------------VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619
+S +L+ D IK+WD++ L T+
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246
Query: 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679
+ F+ G + A++ +++ + + + L + +
Sbjct: 247 DNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304
Query: 680 GAGIANGSV 688
G + +V
Sbjct: 305 VTGSVDQTV 313
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.2 bits (178), Expect = 2e-14
Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 8/174 (4%)
Query: 741 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 800
N G I + +++ +W + V + +++ T S
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE- 209
Query: 801 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 859
K +L S S I ++ V T ++T++ + F+ I
Sbjct: 210 -----TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFIL 263
Query: 860 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913
DD T+ +++ ++ + L H VT L F +V+ D + VW+
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.1 bits (136), Expect = 4e-09
Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 28/167 (16%)
Query: 805 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNP----------- 852
+++ + S S + +++V T + + +++ P
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 853 --------HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 904
+ G D TI +++ + + L GH V G++F ++S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266
Query: 905 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 951
D + VWD + ++L + + T + FHK +
Sbjct: 267 DDKTLRVWDYKNK--RCMKTLNAHEHFV------TSLDFHKTAPYVV 305
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.2 bits (113), Expect = 3e-06
Identities = 17/170 (10%), Positives = 54/170 (31%), Gaps = 9/170 (5%)
Query: 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 905
T + F+P +V+ +D+TI +++ + + L+GH+ V + F + +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL------ 73
Query: 906 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 965
+ + + + + + + + + +
Sbjct: 74 --LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 966 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1015
+ F + + D ++ + D T+ + + E + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.7 bits (109), Expect = 1e-05
Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 20/187 (10%)
Query: 870 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 929
+ R E + L GH VT ++F +++VS+ DA I VWD + R+L+
Sbjct: 3 WIPRPPEKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHT 59
Query: 930 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 989
S I F + + +S + +
Sbjct: 60 D------SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 990 RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1049
+ ++ D T+ + E T H + T A
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVK-----------TFTGHREWVRMVRPNQDGTLIASCS 162
Query: 1050 TNGEVYV 1056
+ V V
Sbjct: 163 NDQTVRV 169
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.9 bits (177), Expect = 5e-14
Identities = 43/397 (10%), Positives = 114/397 (28%), Gaps = 53/397 (13%)
Query: 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH-NSVSVVHFDTAKDQILAA 596
+ + + + + +++ +N + L H + V V F + LA
Sbjct: 22 DLDSQSVPDALKKQTNDYYIL-YNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLAT 79
Query: 597 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656
G + +++ ++ L+ + ++P E+ +
Sbjct: 80 GCNKTTQVYRVSDGSLVARLSDDSAANKDP--------------------------ENLN 113
Query: 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716
++ +R + +P G +A G+ D++ V E +
Sbjct: 114 TSSSPSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169
Query: 717 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 776
L+ S + +I L + + + +
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229
Query: 777 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-------------GGV 823
+ + + + +++V +++ + S S
Sbjct: 230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289
Query: 824 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 883
+ +T + S+A ++ I G D +L ++ +S + L+G
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 884 HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDV 914
H V + ++ N+ + GD + +W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.5 bits (176), Expect = 6e-14
Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 27/193 (13%)
Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
++ P + G+ +WD +G + + +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--------- 255
Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV---------GNVN 445
SV VV++ DG + V+L+ ++ ++ V
Sbjct: 256 ---SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----F 501
+A + + I ++ D+ + WD +G+ +GH V S+ ++
Sbjct: 313 SVATTQNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370
Query: 502 IFSISVDGKIKAW 514
+ S D K + W
Sbjct: 371 FATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.7 bits (161), Expect = 5e-12
Identities = 41/337 (12%), Positives = 104/337 (30%), Gaps = 26/337 (7%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
++ +S + F L G N T ++ V+ L R
Sbjct: 56 HKSLDHTSVVCCVKFSN-DGEYLATGCN-KTTQVYRVSD-GSLVARLSDDSAANKDPENL 112
Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
T+ + + V +SPDG L +++++ +++ + +
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-----NRKIVMILQGHEQDIY 167
Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
+ +++ D+T+++WD TG + + +I + S+
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSL 225
Query: 508 DGKIKAWLYDSLGARVDYDAPGL-------GCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
D ++ W ++ D+ + ++ +G+ + S + + + ++
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285
Query: 561 NESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
++ K G + V V + IL+ D + WD L
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345
Query: 616 IDAGGG----LPENPRICFNKNGTLLAVIANENRIKI 648
+ + + A + + + +I
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 17/171 (9%)
Query: 850 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------GHSKRVTGLVFSDALNILVS 902
+P D IA G D + ++++ + ++ +L+ GH V +VF+ +VS
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271
Query: 903 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH----IQFHKDQTRFLLVHETH- 957
D + +W++ ++ + ++ L +
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331
Query: 958 LAIYEAEELTCLKQW----FPISSVPISQ-ATFSCDCRMVFTSFVDGTLSI 1003
+ ++ + L + SV ++ ++ + + T D I
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 4e-06
Identities = 44/345 (12%), Positives = 95/345 (27%), Gaps = 43/345 (12%)
Query: 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396
P +D L L++ + D+ L T+
Sbjct: 18 PFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVELHKSLDHTS------ 63
Query: 397 VSVNRVVWSPDGSLLGVAYSKHIV--------QLYAYHGGSDARQQLEI------DAHVG 442
V V +S DG L +K + S A + E +
Sbjct: 64 -VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122
Query: 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502
+ + FS K + T +D+ I++WD +GH +Y + +
Sbjct: 123 YIRSVCFSPDGKFL--ATGAEDRLIRIWDIENRKIVMILQGHEQDIY--SLDYFPSGDKL 178
Query: 503 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562
S S D ++ W + + T +G+ + + + + E
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
+ + +SV V F +++ D +K+W++ +
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 623 PENP----------RICFNKNGTLLAVIANENRIKILETPESNSV 657
+ +N + + + + + N +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.7 bits (96), Expect = 4e-04
Identities = 45/295 (15%), Positives = 100/295 (33%), Gaps = 21/295 (7%)
Query: 781 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP 840
LY P + V + V C S + YL + +Y V + +
Sbjct: 42 LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSD 101
Query: 841 PSPTA------------------TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 882
S S+ F+P D +A G +D I I++ + +++ L+
Sbjct: 102 DSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ 160
Query: 883 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 942
GH + + L + + + LVS GD + +WD+ S++ + ++P +
Sbjct: 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220
Query: 943 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1002
R + V ++ + E L + + F+ D + V + +D ++
Sbjct: 221 AAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279
Query: 1003 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF-AVGLTNGEVYV 1056
+ N + + + + ++ + ++ G + V
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 0.001
Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 7/221 (3%)
Query: 840 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS----KLEGHSKRVTGLVFSD 895
P P L + + ++YN I K H+ V + FS+
Sbjct: 14 KPIPPF-LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 72
Query: 896 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 955
L + G + V+ V + S + + + R +
Sbjct: 73 DGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131
Query: 956 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1015
+ E ++ W + + F G + + + V+
Sbjct: 132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191
Query: 1016 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1056
L T T + +A P A G + V V
Sbjct: 192 LRTGQ-CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.7 bits (166), Expect = 1e-12
Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 5/184 (2%)
Query: 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRVTGLVFSDALNILVSS 903
+ A+N D IAI ++ + IY + + +L+ H+ +VTG+ ++ N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 904 GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 963
G D +VW + G + + + + + + + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQE 127
Query: 964 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1023
+ K + + + ++ D I A EV+ R T +
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 1024 TTSC 1027
Sbjct: 188 MPFG 191
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.6 bits (158), Expect = 9e-12
Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 20/257 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
++ W+ D + + + + H V +Y G Q E+ H G V + ++ +I
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
+TCG D+ VW + + + C N S I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 518 SLGARVDYDAPGLGCTRMAYSANGR---------------RLFSCGTSKEGESFLVEWNE 562
S + R+FS + E
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
S+ V V F ++ D + + D +K + T+ +
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244
Query: 623 PENPRICFNKNGTLLAV 639
+ F +L+A
Sbjct: 245 -PLLAVTFITESSLVAA 260
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.6 bits (119), Expect = 7e-07
Identities = 34/361 (9%), Positives = 88/361 (24%), Gaps = 25/361 (6%)
Query: 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNK 632
+S ++ + QI ++H + I++ NK + + G + +
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT--GVDWAP 61
Query: 633 NGTLLAVIANENRIKILETPESNSVDAAGVLS--DNLRKLSVNPISTVTGAGIANGSVSN 690
+ + + + +L R + P G + +S
Sbjct: 62 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121
Query: 691 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 750
+++ + + L S +I Y + A
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS-AYIKEVEERPA 180
Query: 751 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG------------PQFMVNDTTDS 798
G + + + + S V R + T +
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240
Query: 799 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 858
+ + + + + L+ + L+ +
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 300
Query: 859 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDV 914
+D +A + + H V+ + + ++G D + +WDV
Sbjct: 301 FQNLDKKASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
Query: 915 D 915
Sbjct: 359 R 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 35/284 (12%), Positives = 75/284 (26%), Gaps = 25/284 (8%)
Query: 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW----DIGACSMLFKTAL 391
VG+ + ++ + + + L
Sbjct: 96 RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 155
Query: 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451
+ ++S + + E + G V+ + FSA
Sbjct: 156 LAAGSCDFKCRIFSAYIKEV----EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211
Query: 452 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 511
++ D T+ + DA + P+ ++ + ++ + D
Sbjct: 212 NGSRV--AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL---VAAGHDCFP 266
Query: 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571
+ YDS ++ + + + R K+ S EG+
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS--------EGSAAAGA 318
Query: 572 QGLQLQHNSVSVVHF----DTAKDQILAAGDDHVIKIWDMNKVQ 611
L NSVS + Q G D + IWD+ ++
Sbjct: 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.5 bits (90), Expect = 0.002
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQIS--VITCGDDKTIKVWDAVTGSRT 478
GS A H +V+ ++ + K T G D + +WD +
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.5 bits (155), Expect = 2e-11
Identities = 44/364 (12%), Positives = 109/364 (29%), Gaps = 31/364 (8%)
Query: 568 KRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625
+ T +G H + ++ + F+ + ++ DD +I+++D + L + G
Sbjct: 5 RTTLRG----HMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58
Query: 626 PRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684
+ + G L++ R+ ++ V + + G
Sbjct: 59 --LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 685 NGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG 744
+ ++ ++ S ++ E + PL E + R +G
Sbjct: 117 DNTLHVWKLPKE-----SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171
Query: 745 GQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT------- 796
+ N + + + LS R DTT
Sbjct: 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 231
Query: 797 ----DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNP 852
Q L + ++ S+ +++
Sbjct: 232 NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFY 291
Query: 853 HDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 911
+N++ G ++ IYN RS +++ + + + ++ + F ++ + D Q F+
Sbjct: 292 VSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFL 349
Query: 912 WDVD 915
+D
Sbjct: 350 EILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.0 bits (138), Expect = 3e-09
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKEN 498
H N++ + I + G + +++ +G ++ ++S+ K
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 499 IHFIFSISVDGKIKAWLYD 517
+ ++ DG+ + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 9/149 (6%)
Query: 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 905
T L F ++N + G DD I +Y++ + + + +L GH V L ++ ILVS
Sbjct: 17 TCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72
Query: 906 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 965
D + VWD+ +++ + + L +++ +
Sbjct: 73 DRTVRVWDIKKGCCTHVFEGHNSTVRCL-----DIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 966 LTCLKQWFPISSVPISQATFSCDCRMVFT 994
+ + P+ T + V
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 8/151 (5%)
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
VIT DDK I+V+D++ GH V++L + + S S D ++ W
Sbjct: 26 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA---HGGILVSGSTDRTVRVWDIK 82
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
++ + + S++ + W + + + +
Sbjct: 83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGE---E 137
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608
H+ V H + H+ + ++
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.001
Identities = 42/323 (13%), Positives = 88/323 (27%), Gaps = 22/323 (6%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
L ++ + L+ T+ + +
Sbjct: 47 LQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105
Query: 388 KTALVRDPGVSVNRV-VWS-PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 445
K G N + VW P S + +H L + + + H+ +V
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165
Query: 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505
V++ D T+ VWD Y GH +Y S
Sbjct: 166 T----VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHERKRCISA 219
Query: 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565
S+D I+ W + + + + G S +
Sbjct: 220 SMDTTIRIWDL--------ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 271
Query: 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625
R + ++++ + D IL +G ++ I+++ +L+
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVS---DNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328
Query: 626 PRICFNKNGTLLAVIANENRIKI 648
+ F TL+A + + + +
Sbjct: 329 -SVNFK-GKTLVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.004
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462
+ + + ++++Y + L++ H G V L ++ +++
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGGI---LVSGS 71
Query: 463 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
D+T++VWD G T+ FEGH + V L +NI +I + S D + W
Sbjct: 72 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 61.3 bits (147), Expect = 2e-10
Identities = 36/363 (9%), Positives = 95/363 (26%), Gaps = 34/363 (9%)
Query: 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE- 643
+ ++ + + + D+ + + P + V+ N
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHY 61
Query: 644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703
I ++ N +++ + G + + ++S + +
Sbjct: 62 GDIYGIDLDTCK----------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYA------ 105
Query: 704 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 763
N ++ + + + K R + A +G +
Sbjct: 106 -TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
Query: 764 RNDLTLSTEATTKVPPRLYQPR------HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 817
+ + T T P R F + + +
Sbjct: 165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224
Query: 818 SASG-GVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875
+A + T KT + + +P D N I + + Y+ +
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQR 282
Query: 876 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 935
++I + F + L G + V++ D + ++++ P G M+
Sbjct: 283 KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIKLPGGDMSTT 339
Query: 936 PSE 938
+
Sbjct: 340 TPQ 342
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 54.0 bits (128), Expect = 4e-08
Identities = 35/319 (10%), Positives = 76/319 (23%), Gaps = 34/319 (10%)
Query: 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC 383
++ P + P T ++ + GD D+++ + F N
Sbjct: 29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE-- 86
Query: 384 SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-----------R 432
G S+ SPDG + + Y
Sbjct: 87 -----------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135
Query: 433 QQLEIDAHVGNVNDLAFSAPCKQI------SVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486
+ + V + + + K +R
Sbjct: 136 KPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 195
Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546
+ E + L G T A+ L+
Sbjct: 196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255
Query: 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVI 602
G + + + A Q ++ ++ V FD D++ G + +
Sbjct: 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 315
Query: 603 KIWDMNKVQLLTTIDAGGG 621
+++ + ++ + I GG
Sbjct: 316 AVFNPDTLEKVKNIKLPGG 334
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (89), Expect = 0.003
Identities = 13/167 (7%), Positives = 40/167 (23%), Gaps = 18/167 (10%)
Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---------KVWDIG 381
+ + P + + + + K ++ D+
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238
Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
+ D + SP + + + Y + ++
Sbjct: 239 TGKTHTQE--FADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLKQR----KLIKAANLD 291
Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
+AF + + G + V++ T + + + G +
Sbjct: 292 HTYYCVAFDKKGDK--LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.2 bits (87), Expect = 0.004
Identities = 20/186 (10%), Positives = 43/186 (23%), Gaps = 14/186 (7%)
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 505
A A + + I + V D + + S + ++
Sbjct: 2 PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58
Query: 506 SVDGKIKAW------LYDSLGARVDYDAPGLGCTRMAYSANGRRLF--SCGTSKEGESFL 557
+ G I G A S +G+ ++ T + + ++
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
Query: 558 VEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
V+ E + V+ A D I D+ +
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178
Query: 616 IDAGGG 621
+
Sbjct: 179 LPLRNW 184
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 5e-10
Identities = 45/368 (12%), Positives = 108/368 (29%), Gaps = 41/368 (11%)
Query: 560 WNESEGAIKRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
W E + +G H+ ++ + F ++I++ DD+ +K+W + L T+
Sbjct: 1 WRRGELKSPKVLKG----HDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV 54
Query: 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677
G + + +N I T + V A
Sbjct: 55 G-------------HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR 101
Query: 678 VTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 737
+ D V + + + ++ + +
Sbjct: 102 CMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS--GAYDFMV 159
Query: 738 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 797
++ + L + + +S T + R++ G
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI--RVWDVETGNCIHTLTGHQ 217
Query: 798 SNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 856
S + D L S + + ++ + T + + T+ P+ +++ + N
Sbjct: 218 S------LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271
Query: 857 VIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDALNILVSSGGD----A 907
+ DD T+ +++ ++ E I L G V + S+ + +
Sbjct: 272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
Query: 908 QIFVWDVD 915
++ V D D
Sbjct: 332 KLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 3e-09
Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 31/309 (10%)
Query: 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407
++ G++ +W +G+ +R G S + ++ VW+ +
Sbjct: 28 NRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 85
Query: 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS---------- 457
H + H DA + + +
Sbjct: 86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145
Query: 458 ----VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 513
V++ D +KVWD T + ++ +GH VYSL + S S+D I+
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI----HVVSGSLDTSIRV 201
Query: 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573
W ++ + G L S +S + W+ G +T QG
Sbjct: 202 WDVET--GNCIHTLTGHQSLTSGMELKDNILVSG----NADSTVKIWDIKTGQCLQTLQG 255
Query: 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICF 630
++V+ + F+ K+ ++ + DD +K+WD+ ++ L T+++GG RI
Sbjct: 256 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313
Query: 631 NKNGTLLAV 639
+ + AV
Sbjct: 314 SNTKLVCAV 322
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 3e-09
Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 32/245 (13%)
Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
+ + + H +V C +++ DD T+KVW AVTG + GH V
Sbjct: 4 GELKSPKVLKGHDDHVIT-CLQ-FCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 489 YSLC-----PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543
+S + + + + + V R
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120
Query: 544 LFSCGTSKEGESF---------------LVEWNESEGAIK-----RTYQGLQLQHNSVSV 583
++ T + V + +K LQ ++ V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180
Query: 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643
+++ D I++WD+ + T+ ++ +L +
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELKDNILVSGNAD 236
Query: 644 NRIKI 648
+ +KI
Sbjct: 237 STVKI 241
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 13/158 (8%)
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
V++ D +I+VWD TG+ ++ GH + + + + S + D +K W
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD----NILVSGNADSTVKIWDIK 245
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ P + + + S +G L W+ G R L+
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302
Query: 578 H--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK 609
V + K + + + D +
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 6e-04
Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 27/204 (13%)
Query: 853 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 912
N I G DD+T+ +++A + + + L GH+ V D NI++S D + VW
Sbjct: 25 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVW 82
Query: 913 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 972
+ + T + + +D T + E +
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------------TGQCL 130
Query: 973 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1032
+ + D R V + D + + + L +
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT-------------LQGHT 177
Query: 1033 HAIAAHPLKPTQFAVGLTNGEVYV 1056
+ + + G + + V
Sbjct: 178 NRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 1e-09
Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 44/304 (14%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------------- 370
E S + + ++ G +WD N+ +
Sbjct: 9 HCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 371 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428
I + + L + + ++ + ++
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125
Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
+D + + H VN + F + D+TIKVW+ T + GH +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIV----SASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548
L + S S D I+ W D G + +R+ S
Sbjct: 182 ACLQYRD----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG- 234
Query: 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQH------NSVSVVHFDTAKDQILAAGDDHVI 602
+ + W+ R G V + FD + QI+++ D I
Sbjct: 235 ---AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTI 289
Query: 603 KIWD 606
IWD
Sbjct: 290 LIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 4e-08
Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 20/209 (9%)
Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 499
V L + +++ D TIK+WD T GH V L + I
Sbjct: 14 TSKGVYCLQYDDQ----KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69
Query: 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559
+V +A + S
Sbjct: 70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV---------- 119
Query: 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619
W+ + L + +V D I++A D IK+W+ + + + T++
Sbjct: 120 WDMAS--PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG- 176
Query: 620 GGLPENPRICFNKNGTLLAVIANENRIKI 648
+ C L+ +++N I++
Sbjct: 177 ---HKRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (110), Expect = 5e-06
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 15/119 (12%)
Query: 805 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 863
L D + S S I L+ + + + DN I G
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAY 236
Query: 864 DSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913
D I +++ ++ + L HS RV L F + +VSS D I +WD
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 3e-05
Identities = 27/211 (12%), Positives = 62/211 (29%), Gaps = 27/211 (12%)
Query: 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 905
L + D+ I G+ D+TI I++ + E L GH+ V L + + + I
Sbjct: 19 YCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII------ 69
Query: 906 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 965
D + + + + +A+++
Sbjct: 70 -----TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 966 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1025
T + + + D + + ++ D T+ + S E
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR------------ 172
Query: 1026 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1056
L+ + IA + G ++ + +
Sbjct: 173 -TLNGHKRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.0 bits (138), Expect = 2e-09
Identities = 32/322 (9%), Positives = 84/322 (26%), Gaps = 25/322 (7%)
Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
+ + + P + + G+ F+R D G +
Sbjct: 18 NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61
Query: 395 PGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYHGGSDARQQL-----EIDAHVGNVNDL 447
V V +SP L V ++ + ++ E G ++D+
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
++ +++ V+ G D +G+ GH + + + +
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 508 DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
+ + D G + + + + ++ G
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISCFDGKSGEF 240
Query: 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
+ + Q + G D I++WD+ + + N +
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
Query: 628 ICFNKNGT-LLAVIANENRIKI 648
+ G + ++ + +
Sbjct: 301 VGVVATGNGRIISLSLDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 458 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
T G D TI+VWD T + ++ + + A N I S+S+DG + +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 10/168 (5%)
Query: 834 TILTIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGH-S 885
++ I+PP P T L+++P N + + + + S+V + + GH S
Sbjct: 4 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63
Query: 886 KRVTGLVFSDALN--ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 943
VT + FS L S ++ VW + LA + I +
Sbjct: 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123
Query: 944 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 991
+ R +V E +S
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 5e-06
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 851 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL---VFSDALNILVSSGGDA 907
+ D+ A D+TI +++ +S+ + K +++ V + ++S D
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 908 QIFVWDV 914
+ +++
Sbjct: 319 TLNFYEL 325
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 3e-09
Identities = 32/324 (9%), Positives = 73/324 (22%), Gaps = 13/324 (4%)
Query: 592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651
Q + D +I + + T++ G + + + + + +K+ +
Sbjct: 24 QPVPFPPDALIGPGIPRHARQINTLNHGEVVC---AVTISNPTRHVYT-GGKGCVKVWDI 79
Query: 652 PESNSVDAAGVLSDNLRKLSVNPIS-TVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710
+ L R + G + G ++ D+ +
Sbjct: 80 SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139
Query: 711 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 770
+A S + S I+ +N + L
Sbjct: 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199
Query: 771 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM 830
T + + +L + +
Sbjct: 200 TGGLDNTVRSWDLREGRQLQQHDF------TSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253
Query: 831 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 890
+ SL F D+ + + I + S V
Sbjct: 254 NKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLS 311
Query: 891 LVFSDALNILVSSGGDAQIFVWDV 914
S +V+ GD + V++V
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 7e-09
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+ + + P G + + + + ++ H V L F+ K
Sbjct: 226 QIFSLGYCPTGEW----LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
++ G D + W G+ + + V S + +I + S D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK--YIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 31/275 (11%), Positives = 73/275 (26%), Gaps = 19/275 (6%)
Query: 376 KVWDIGACSMLFKTALVRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
KVWDI + + + PDG L V + ++ + +
Sbjct: 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134
Query: 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
+ S + G+ + + +T + G + C
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCI 189
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
+ +++ +D +++W +D + Y G L S
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248
Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
E V L L + V + F ++ G D+++ W +
Sbjct: 249 EVLHVNKP--------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300
Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
+ + + + + + + +
Sbjct: 301 FQSKESSSV---LSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461
+ ++ G +++ + G + +V S K I +T
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLSCDISVDDKYI--VTG 324
Query: 462 GDDKTIKVWD 471
DK V++
Sbjct: 325 SGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 14/111 (12%)
Query: 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
F+ A+ P S + + DG + V + + G +Q+ H V
Sbjct: 3 FQGAMGSKPAYSFH---VTADGQMQPVPFPPDAL---IGPGIPRHARQINTLNHGEVVCA 56
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHGAPVYSLC 492
+ S P + + G +KVWD + S
Sbjct: 57 VTISNPTRHVY---TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.001
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 5/129 (3%)
Query: 863 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 922
D+ I R + I+ L H + V + S+ + + GG + VWD+ G ++
Sbjct: 30 PDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSP 87
Query: 923 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ 982
S + D ++ E + ++S +
Sbjct: 88 VSQLDCLNRDNYI---RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144
Query: 983 ATFSCDCRM 991
+
Sbjct: 145 YALAISPDS 153
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.002
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 8/75 (10%)
Query: 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591
+ ++ G+ S G L W GA + +SV
Sbjct: 268 VLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGASIFQSKE----SSSVLSCDISVDDK 319
Query: 592 QILAAGDDHVIKIWD 606
I+ D +++
Sbjct: 320 YIVTGSGDKKATVYE 334
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.4 bits (131), Expect = 1e-08
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 839 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL 897
+ P + +++A G D+ I IY+ + ++I L H V L++
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269
Query: 898 NILVSSGGDAQIFVWDV 914
+ LVSSG DA I W+V
Sbjct: 270 STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
I H + L + +I+ D I W + + + H + SL
Sbjct: 9 ISGHNKGITALTVN------PLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57
Query: 497 ENIHFIFS 504
+ I
Sbjct: 58 QEYSSISW 65
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 3e-05
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 459 ITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
T D I ++ + H V +L + S D IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473
++AH VN+L + P +++ G D IK W+ V
Sbjct: 254 LNAHKDGVNNLLWETPST---LVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 876 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915
EV+ + GH+K +T L + L+S D +I W
Sbjct: 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (89), Expect = 0.002
Identities = 28/248 (11%), Positives = 61/248 (24%), Gaps = 34/248 (13%)
Query: 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 905
T+L NP + G D I+ +++ S + HS + L S A S
Sbjct: 17 TALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWD 66
Query: 906 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA------ 959
D + + T + ++ L
Sbjct: 67 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126
Query: 960 ------------------IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 1001
+++ +L S + S + V G +
Sbjct: 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186
Query: 1002 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061
+++ + EV+ + + ++ A G + +++
Sbjct: 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246
Query: 1062 PGDTWAVL 1069
P L
Sbjct: 247 PMKIIKAL 254
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 4e-08
Identities = 44/337 (13%), Positives = 84/337 (24%), Gaps = 32/337 (9%)
Query: 313 SFGETS-FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF 371
F +T+ F P+T + + + P + N V S
Sbjct: 2 EFSQTALFPSLPRTA-------RGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLTDTE 52
Query: 372 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 431
I + SP G V+++ +
Sbjct: 53 I-------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93
Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
+ I G V D + + + A +
Sbjct: 94 LKT-TIPVFSGPVKD-ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151
Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551
I S S D + + + + + Y+ +G S G
Sbjct: 152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 211
Query: 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
+ G + SV + + +I +A D IKIW++ ++
Sbjct: 212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271
Query: 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
+ TI G + E+ ++ L I+ I
Sbjct: 272 VEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 9e-07
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 7/119 (5%)
Query: 837 TIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 891
+ P P TA L P + I S + S HS + T
Sbjct: 7 ALFPSLPRTARGTAVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVA 64
Query: 892 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 950
S + S + +WD ++ G + ++ +
Sbjct: 65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 851 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSGGDA 907
D IA D TI I+N + +V + ++ + G++++ LVS +
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK--QALVSISANG 303
Query: 908 QIFVWDVD 915
I + +
Sbjct: 304 FINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAW 514
+ + DKTIK+W+ T + + + SIS +G I
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.7 bits (124), Expect = 9e-08
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKEN 498
H + L+ SA K + + + I WD TG F + H + + +K +
Sbjct: 11 HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 499 IHFIFS 504
+ +
Sbjct: 69 LFTVSW 74
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 4e-05
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSG 904
T+L+ + D + + I ++ + + H+ +TG+ + L +
Sbjct: 16 TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS 73
Query: 905 GDAQIFVWDVDGWGIQTC 922
D + V G G+ +
Sbjct: 74 WDDHLKVVPAGGSGVDSS 91
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 1e-04
Identities = 12/69 (17%), Positives = 21/69 (30%)
Query: 876 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 935
+ GH+K +T L S L S+ + I WD+ + +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 936 PSETHIQFH 944
+ F
Sbjct: 63 TTSKGDLFT 71
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 850 FNPHDNNVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 907
DN +A G D++++++N S I H+ V +VS+G D+
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290
Query: 908 QIFVWDV 914
I W+V
Sbjct: 291 NIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.1 bits (94), Expect = 4e-04
Identities = 40/298 (13%), Positives = 80/298 (26%), Gaps = 20/298 (6%)
Query: 325 TVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL------------- 370
++ Q G + ++ L G WD+++G
Sbjct: 3 SIDQVR-YGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 371 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428
++ + L S V LG+A S A
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120
Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
A V + + A + G + ++G+ + P
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180
Query: 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548
N F+ + K+ + + ++ ++A +
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240
Query: 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
T S +V WN ++ + +SV+ V + I++AG D IK W+
Sbjct: 241 TGSLDNSVIV-WNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 2e-07
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----------GHGA 486
AH ++ ++ ++C D +KVWD + H
Sbjct: 11 KAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
V + + + S G + +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITR 98
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 41/393 (10%), Positives = 100/393 (25%), Gaps = 41/393 (10%)
Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC--------- 629
+ V ++ D +K+WD + D +
Sbjct: 15 ADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72
Query: 630 --FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687
L+A + + + +L + S A+
Sbjct: 73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132
Query: 688 VSNED------PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 741
K ++S ++ E Q + + + +
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192
Query: 742 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR--LYQPRHGPQFMVNDTTDSN 799
+ G + V + L + + + + PQ + +
Sbjct: 193 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252
Query: 800 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 859
+ ++ + S S + + L S SL+FN +
Sbjct: 253 NSFGCITLYETEFGERIGSLSVPT------HSSQASLGEFAHSSWVMSLSFNDS-GETLC 305
Query: 860 IGMDDSTILIYNARSSEVISKLEGHSKRV----TGLVFSDALNILVSSGGDAQIFVWDVD 915
D + ++ ++ E I+ L H + L + + L G V+DV
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVK 359
Query: 916 GW--GIQTCRSLQTPDGVMTLAPSETHIQFHKD 946
G ++ + + + + I++ ++
Sbjct: 360 FLKKGWRSGMGADLNESLCCVCLDRS-IRWFRE 391
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 5e-06
Identities = 33/320 (10%), Positives = 88/320 (27%), Gaps = 48/320 (15%)
Query: 361 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420
+WD ++ + + V + + L+ +
Sbjct: 38 VWDNKLLDNENPKDKSYSHFV------HKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91
Query: 421 QLYAYHGGSDAR-------QQLEIDAHVGNVNDLAFSAPCKQIS---VITCGDDKTIKVW 470
Y + + L+ D + L + A ++ ++ T +W
Sbjct: 92 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 151
Query: 471 DA-VTGSRTYSFEGHGAPVYSLCPHAKENIH--------------FIFSISVDGKIKAWL 515
+ S + +P L + + I + +G ++
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 211
Query: 516 YDSLGARVDYD-----APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570
+L +++ R + L + + + G +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271
Query: 571 YQG----------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-- 618
+ V + F+ + + + +AG D ++ WD+ + +TT++
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331
Query: 619 GGGLPENPRICFNKNGTLLA 638
E + +++G LA
Sbjct: 332 DDIEIEEDILAVDEHGDSLA 351
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 9e-05
Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 4/188 (2%)
Query: 305 SLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV 364
E S + + ++ + S S+D L+ G N G + ++
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISEL 212
Query: 365 NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 424
++ + L+ + I + + + + G +
Sbjct: 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272
Query: 425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484
++ L AH V L+F+ + + + G D ++ WD T R + H
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETL--CSAGWDGKLRFWDVKTKERITTLNMH 330
Query: 485 GAPVYSLC 492
+
Sbjct: 331 CDDIEIEE 338
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 26/300 (8%), Positives = 75/300 (25%), Gaps = 29/300 (9%)
Query: 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQ 433
V D ++ K + D G + + +P G + S+ +V++ G + R
Sbjct: 14 VVIDTEKMAVD-KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72
Query: 434 QLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492
L A S K +++ + ++ + +
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 493 PHAK-------ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545
+ + ++ + D + +L +
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 546 SCGTSKEGESFLVEWNESEGAIKRTYQGL-------------QLQHNSVSVVHFDTAKDQ 592
+ + GL +++ V +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKILET 651
A G +V++ +D+ K + + + + +G+ + + + +
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHS----YYSVNVSTDGSTVWLGGALGDLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.3 bits (121), Expect = 3e-07
Identities = 33/326 (10%), Positives = 81/326 (24%), Gaps = 17/326 (5%)
Query: 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649
+D ILA + + D K+ + I P G + N+
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK------ 54
Query: 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKS 709
S S+ +++ + ++S + +
Sbjct: 55 ----SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110
Query: 710 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 769
EV+ A + +I+ L + G ++ G L P +
Sbjct: 111 EVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY---GLGRDLHVMDPEAGTLV 167
Query: 770 STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIV 829
+ Y + + A + G++++ +
Sbjct: 168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227
Query: 830 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 889
+ + S A NP + + ++ + I ++
Sbjct: 228 TGEMAMREVRIMDVFYFSTAVNPAKT---RAFGAYNVLESFDLEKNASIKRVP-LPHSYY 283
Query: 890 GLVFSDALNILVSSGGDAQIFVWDVD 915
+ S + + G + +D +
Sbjct: 284 SVNVSTDGSTVWLGGALGDLAAYDAE 309
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 33/314 (10%), Positives = 79/314 (25%), Gaps = 40/314 (12%)
Query: 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK 388
T+ + +PM P D+ +G+ L +
Sbjct: 28 TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------- 77
Query: 389 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--------SDARQQLEIDAH 440
+ S+ SPDG L + S ++L + ++ + +
Sbjct: 78 ----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133
Query: 441 VGNVNDLAFS-------APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
+ LA++ + + V+ ++ + + V++
Sbjct: 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
+ ++ D G D FS +
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 554 ------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607
+ L ++ + A + +S V+ T + G + +D
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
Query: 608 NKVQLLTTIDAGGG 621
++ +D G
Sbjct: 309 ETLEKKGQVDLPGN 322
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.4 bits (90), Expect = 0.002
Identities = 13/165 (7%), Positives = 40/165 (24%), Gaps = 12/165 (7%)
Query: 458 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515
++ + V D + + + G +++ +
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKID 62
Query: 516 YDSLGARVDYDAP-----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570
+ D A S +G+ L + E E + A+
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 571 YQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
+ ++++ + ++ G D + + +
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (88), Expect = 0.003
Identities = 15/164 (9%), Positives = 44/164 (26%), Gaps = 9/164 (5%)
Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390
S P + + G + + + + + G +M +T
Sbjct: 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229
Query: 391 ---LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
+ + V + + + + ++++ + ++ + +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN----ASIKRVPLPHSYYSV 285
Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
S + G + +DA T + + G SL
Sbjct: 286 NVSTDGSTV--WLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 30/339 (8%), Positives = 81/339 (23%), Gaps = 21/339 (6%)
Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654
+ D +++ ID G P +G+ +A A+ +I +
Sbjct: 23 HFAAVTQQFVIDGEAGRVIGMIDGGFL----PNPVVADDGSFIAH-ASTVFSRIARGERT 77
Query: 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKP 714
+ V+ ++ P + G S + + A V+
Sbjct: 78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE 137
Query: 715 LFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 774
A + + G
Sbjct: 138 GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI 197
Query: 775 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT 834
+ T + + S + +L + +
Sbjct: 198 NHP------AYSQKAGRLVWPTYTGKIHQIDLS--SGDAKFLPAVEALTEAERADGWRPG 249
Query: 835 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 894
+ + + +++ +A++ E ++K E + + S
Sbjct: 250 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVS 308
Query: 895 --DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 931
+ + S GD +++ D ++ L++ + +
Sbjct: 309 QDEKPLLYALSTGDKTLYIHDA-----ESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 13/142 (9%)
Query: 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409
L+ T G D++SG F+ + + +V +
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA-------DGWRPGGWQQVAYHRALD 261
Query: 410 LLGVAYSKHIVQLYAYHGGS------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463
+ + + + ++L ++ + S K +
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321
Query: 464 DKTIKVWDAVTGSRTYSFEGHG 485
DKT+ + DA +G S G
Sbjct: 322 DKTLYIHDAESGEELRSVNQLG 343
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.5 bits (93), Expect = 8e-04
Identities = 32/323 (9%), Positives = 72/323 (22%), Gaps = 48/323 (14%)
Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTG---------LWDVNSGQKLFIRNFKVWDIG 381
I+G P + + T ++D +
Sbjct: 44 IDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102
Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
+ G ++ +SP ++ V +
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF------PT 156
Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501
+ G + T ++ F +
Sbjct: 157 APDTFFMHCRDGSLA-KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-------KAGR 208
Query: 502 IFSISVDGKIKAWLYDSLGARVDYDAPGLG------------CTRMAYSANGRRLF---- 545
+ + GKI S A+ L ++AY R++
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268
Query: 546 --SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF--DTAKDQILAAGDDHV 601
K F+V + G ++ + + ++ D + D
Sbjct: 269 QRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKT 324
Query: 602 IKIWDMNKVQLLTTIDAGGGLPE 624
+ I D + L +++ G P+
Sbjct: 325 LYIHDAESGEELRSVNQLGHGPQ 347
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 29/326 (8%), Positives = 77/326 (23%), Gaps = 39/326 (11%)
Query: 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398
+ P + LL WD + V+ +
Sbjct: 16 DIKIIPSKSLLL--------ITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHP 58
Query: 399 VNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+ + + + V + + G + +A++G + +
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
+ + + V + N + + +++ +
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 518 SLG--------------ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNE 562
R P S +GR + + + +
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238
Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
+ L NS+ F + AG D +I W++ + +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIE---FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-- 293
Query: 623 PENPRICFNKNGTLLAVIANENRIKI 648
E+ + + +L + +++ K
Sbjct: 294 -EDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 21/265 (7%), Positives = 55/265 (20%), Gaps = 14/265 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
++ + P SLL + + +Y + + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
+ + +KV + S ++ S ++
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-L 576
G + S S + + L
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR--------- 627
++ V ++ + D + + + +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 628 ----ICFNKNGTLLAVIANENRIKI 648
I F+ L ++ I
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 5e-06
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 19/129 (14%)
Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVND 446
+ + + + V + + D R L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 505
+ FS K + T G D I W+ T + +F + V + +
Sbjct: 257 IEFSPRHKFL--YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 506 SVDGKIKAW 514
+ D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 840 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE---GHSKRVTGLVFSDA 896
P + + P +++ I D ++ +Y L + + F D
Sbjct: 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 897 LNILVSSGGDAQIFVW 912
++ + G +
Sbjct: 68 TDLQIYVGTVQGEILK 83
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 6/62 (9%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 876 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMT 933
+++ + ++ + + ++L+ + D + V+ D + +SL+ ++
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 934 LA 935
Sbjct: 62 CN 63
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 35/355 (9%), Positives = 86/355 (24%), Gaps = 44/355 (12%)
Query: 298 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG 357
D+SP F S G+ D T + E + + GT G
Sbjct: 8 EDFSPLDG-DLIAFVSRGQAFIQDVSGTYVLKVPEPLR-IRYVRRGGDTKVAFIHGTREG 65
Query: 358 DT-GLWDVNSGQKL----------------------FIRNFKVWDIGACSMLFKTALVRD 394
D G++D +G+ + T + R
Sbjct: 66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125
Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFS 450
+ S + + + + Y + D + A N +D A +
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185
Query: 451 APCKQISVITCGDDKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIF 503
++ D V + + + +
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245
Query: 504 SISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562
++ ++ + P + + + L++++
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305
Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
+ N+++ + + ++ DD I + + K + T++
Sbjct: 306 KTRKVTEV-------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 17/159 (10%)
Query: 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-------- 389
++ F V ++ V + + D+ S
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 449
+ + + V + A K ++ Y ++ N+ DL
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDLRL 322
Query: 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
SA K + + DD I + + E P+
Sbjct: 323 SADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 38/394 (9%), Positives = 89/394 (22%), Gaps = 97/394 (24%)
Query: 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395
S + DF P+ L+ + G + DV+ L +
Sbjct: 4 SKFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPE--------------------- 41
Query: 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS----- 450
+ + V D + + ++ L Y + + + + ++GNV +
Sbjct: 42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKF 99
Query: 451 ---------------------------------------------APCKQISVITCGDDK 465
+ +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525
I V+D + + + P + ++ +S + L +
Sbjct: 160 AIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 216
Query: 526 DAPGLGCT-------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
+ + + R L+
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276
Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
SV A + V+ +D+ ++ + L + + +
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL------RLSADRKTVM 330
Query: 639 VIANENRIKI--LETPESNSVDAAGVLSDNLRKL 670
V ++ +I LE PE + + R L
Sbjct: 331 VRKDDGKIYTFPLEKPEDER-----TVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 850 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 909
+ + +L Y+ ++ K+ +T L S ++ D +I
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338
Query: 910 FVWDVDG 916
+ + ++
Sbjct: 339 YTFPLEK 345
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (111), Expect = 8e-06
Identities = 28/231 (12%), Positives = 51/231 (22%), Gaps = 16/231 (6%)
Query: 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAP 452
G +V+ S G L V V + + EI
Sbjct: 61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-EPTTVAEIKIGSEARSIETSKMEGWE 119
Query: 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----------FI 502
K + + D T G H + + FI
Sbjct: 120 DKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178
Query: 503 FSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561
++ GKI Y L + + + R + ++ +
Sbjct: 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238
Query: 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612
AI+ T + VH + D + + +
Sbjct: 239 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 289
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (90), Expect = 0.003
Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 7/148 (4%)
Query: 840 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 898
P T + N+ ++ D I + + + E+ + L+ V S +
Sbjct: 16 APEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR 74
Query: 899 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T 956
L G D ++ + D+ T ++ ++ S + +
Sbjct: 75 YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS---KMEGWEDKYAIAGAYWPP 131
Query: 957 HLAIYEAEELTCLKQWFPISSVPISQAT 984
I + E L K Q
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEY 159
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.1 bits (108), Expect = 2e-05
Identities = 26/296 (8%), Positives = 54/296 (18%), Gaps = 66/296 (22%)
Query: 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392
+ LL V ++ +C +
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-----QLTKSASCFHIH----- 171
Query: 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 452
PG + + S SL + Q A N + A
Sbjct: 172 --PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229
Query: 453 CKQISVITCGDDKTIKVWD---AVTGSRTYSFEGHGAPVYSLCPHAKE---NIHFIFSIS 506
I +G + +F G + + +
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289
Query: 507 VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565
+ S+G + G + + +G
Sbjct: 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN-------------------- 329
Query: 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621
+ V+ I+D Q ++++ G
Sbjct: 330 ---------------------------YANSAGTEVLDIYDAASDQDQSSVELDKG 358
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.6 bits (104), Expect = 5e-05
Identities = 30/301 (9%), Positives = 60/301 (19%), Gaps = 51/301 (16%)
Query: 389 TALVRDPGVSVNRVVWSPDGSLLGVA----------YSKHIVQLYAYHGGSDARQQLEID 438
L G ++ V GS +A V+++ +I+
Sbjct: 57 VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIE 113
Query: 439 AH-------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
V+ + A + + S +
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH- 171
Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------APGLGCTRMAYS 538
P A + S + A + A A M
Sbjct: 172 -PGAA---ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227
Query: 539 ANGRRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQ--HNSVSVVHFDTAKDQI 593
A + G + + +E G Q+ + + T +
Sbjct: 228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287
Query: 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE--NRIKILE 650
+ Q I G I ++G + + I +
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPISNGHD----SDAIIAAQDGASDNYANSAGTEVLDIYD 343
Query: 651 T 651
Sbjct: 344 A 344
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.9 bits (97), Expect = 3e-04
Identities = 11/170 (6%), Positives = 36/170 (21%), Gaps = 19/170 (11%)
Query: 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL 391
+++ + G+ + + +M
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD---IPAAGATMKAAIDG 251
Query: 392 VRDPGVSVNR-------VVWSPDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEI 437
+ N V + + + +H Q
Sbjct: 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS--RSCLAAAENTSSVTASVGQTSGP 309
Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487
++ + + + + + + + ++DA + S E P
Sbjct: 310 ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.9 bits (97), Expect = 3e-04
Identities = 39/367 (10%), Positives = 96/367 (26%), Gaps = 34/367 (9%)
Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETPE 653
D I + D + +++ ID G + +G L VI + RI I +
Sbjct: 37 TLRDAGQIALVDGDSKKIVKVIDTGYA-VHI--SRMSASGRYLLVIGRDARIDMIDLWAK 93
Query: 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEK 713
+ A + R + + P + + + +
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTI---AGAYWPPQFAIMDGETLEPKQIVSTR 150
Query: 714 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 773
+ + + A+ N + + V L+ ++LT+++
Sbjct: 151 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTSIG 204
Query: 774 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 833
+ + + A+ + SA V
Sbjct: 205 AAPFL-------ADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV---GKTPHPG 254
Query: 834 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 893
+ P + D ++ IG D Y + +++L+G +
Sbjct: 255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA---WKKVAELQGQGGGSLFIKT 311
Query: 894 S-DALNILV------SSGGDAQIFVWDV-DGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 945
+ ++ V + + V+D+ + + + A +++K
Sbjct: 312 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK 371
Query: 946 DQTRFLL 952
Sbjct: 372 RGDEVWF 378
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.2 bits (92), Expect = 0.001
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474
+ + I + +A + K++ + T+ V D T
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV-YVALSFCNTVSVIDTAT 275
Query: 475 GSRTYSFEGHGAP 487
+ T + P
Sbjct: 276 NTITATMAVGKNP 288
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.9 bits (91), Expect = 0.001
Identities = 35/290 (12%), Positives = 73/290 (25%), Gaps = 15/290 (5%)
Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE-NRIKILETP 652
A + I + D+ ++ TI G NP + +GT + V N + I+
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSII--- 59
Query: 653 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712
V++ S ++ + + + A +
Sbjct: 60 ---DTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK 116
Query: 713 KPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 772
PL S L + +S + + D T
Sbjct: 117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT--PDGTKVYV 174
Query: 773 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF 832
A + ++ +K +S+ T
Sbjct: 175 ANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234
Query: 833 KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 882
K I P P +A P V +T+ + + ++ + + +
Sbjct: 235 KITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 38.7 bits (88), Expect = 0.003
Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 6/179 (3%)
Query: 454 KQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 511
KQ I + + I VW+ V + + + + + ++
Sbjct: 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRV 61
Query: 512 KAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568
A+ A T ++ G+ +F + S + +
Sbjct: 62 LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121
Query: 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
+GL H++ T L + + D + + PR
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1091 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.82 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.78 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.78 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.57 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.56 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.53 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.45 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.28 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.23 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.21 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.13 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.09 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.98 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.96 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.93 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.9 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.86 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.85 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.85 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.84 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.75 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.58 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.55 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.28 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.18 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.11 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.88 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.87 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.84 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.76 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.76 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.75 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.71 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.68 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.64 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.63 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.61 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.61 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.56 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.54 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.54 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.51 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.42 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.33 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.31 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.3 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.24 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.97 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.37 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.26 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.82 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.6 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.62 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.88 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 92.11 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.86 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 91.66 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 90.5 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 87.32 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 87.28 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 85.77 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-36 Score=331.15 Aligned_cols=293 Identities=13% Similarity=0.174 Sum_probs=251.3
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
+.+++| +|.+.|+|++|||+|+ +||+|+ ||.|+|||+.++..... .......+|...|.+++|
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~ 105 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred eEEEEC-CCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEE
Confidence 345555 8999999999999998 678987 79999999987754421 112225679999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
+|||++|++|+.|++|++||+..... +....+.+|...|.+++|+|++. ++++++.|+.|++||+.++++.....+|
T Consensus 106 s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 182 (337)
T d1gxra_ 106 LPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred cCCCCEEEEeeccccccccccccccc-ccccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 99999999999999999999986543 23346778999999999999999 8999999999999999999999999999
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
...|.+++|+ +++..+++++.|+.+++||+++.+....+. +...|.+++|+|+++++++++. ++.+++||+.+
T Consensus 183 ~~~v~~l~~s--~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~ 255 (337)
T d1gxra_ 183 TDGASCIDIS--NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNK 255 (337)
T ss_dssp SSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS
T ss_pred cccccccccc--ccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----ccccccccccc
Confidence 9999999995 466799999999999999999877665554 5678999999999999999876 56699999998
Q ss_pred ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC
Q 001367 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
++... ...|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+... ..|.+++|+|++++|++++.||
T Consensus 256 ~~~~~-~~~~~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~ 328 (337)
T d1gxra_ 256 PDKYQ-LHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp SCEEE-ECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTS
T ss_pred ccccc-ccccc---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCC
Confidence 87653 34444 78999999999999999999999999999999998887643 3689999999999999999999
Q ss_pred eEEEEEC
Q 001367 645 RIKILET 651 (1091)
Q Consensus 645 ~i~iwd~ 651 (1091)
+|+|||+
T Consensus 329 ~I~vWdl 335 (337)
T d1gxra_ 329 KATVYEV 335 (337)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 9999986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-35 Score=324.42 Aligned_cols=288 Identities=21% Similarity=0.361 Sum_probs=263.1
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
.++|.||++.|++++|+|+++ +||||+.||+|+|||+.+++.+.. +.+|...|.+++|+|
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~ 69 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDH 69 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECT
T ss_pred cEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeec
Confidence 467999999999999999998 679999999999999999988765 778999999999999
Q ss_pred CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
++.++++++.++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++||+.+++.+..+.+|..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 144 (317)
T d1vyhc1 70 SGKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHRE 144 (317)
T ss_dssp TSSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cccccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCC
Confidence 99999999999999999988765433 4668999999999999999 799999999999999999999999999999
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCC--------------------CEEEE
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--------------------RRLFS 546 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~--------------------~~l~~ 546 (1091)
.+.+++++ +++.+|++++.|+.|++|++.+......+..+...+.++.++|++ ..+++
T Consensus 145 ~~~~~~~~--~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (317)
T d1vyhc1 145 WVRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222 (317)
T ss_dssp CEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred cceeeecc--cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence 99999985 467899999999999999999999999999999999999998764 35666
Q ss_pred EecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCc
Q 001367 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1091)
++. ++.|++||..+++.+..+.+|. ..|.+++|+|++++|++++.||.|++||+.+++++..+..|.. .|.
T Consensus 223 ~~~----d~~i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~ 293 (317)
T d1vyhc1 223 GSR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVT 293 (317)
T ss_dssp EET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEE
T ss_pred ccC----CCEEEEEECCCCcEEEEEeCCC---CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEE
Confidence 654 6779999999999999999887 8999999999999999999999999999999999999987754 799
Q ss_pred eEEEccCCCEEEEEECCCeEEEEE
Q 001367 627 RICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
+++|+|++++|++++.||+|++||
T Consensus 294 ~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 294 SLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.9e-35 Score=315.30 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=246.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.+.+.+.+++++|+|+.+ |.++ ++.|.+||+.+++.... +.+|...|++++|+|||++|
T Consensus 15 ~~r~~~~~~a~~~~g~~l-~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~l 73 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKI-QYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC 73 (311)
T ss_dssp CCTTCCCCCEECTTSSEE-EEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred CCCCCeEEEEEcCCCCEE-EEEe-CCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeE
Confidence 344567789999999954 5554 57799999998877654 77899999999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC--CCcEEEEeCCCCceeEEecCCCcceE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
|+|+.||+|+|||+.+++.... ..+.+|..+|.+++|+|+++ ++++++. +..++||++++++....+.+|...|.
T Consensus 74 atg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~ 150 (311)
T d1nr0a1 74 ASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN 150 (311)
T ss_dssp EEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred eccccCceEeeeeeeccccccc-cccccccCcccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998765432 35788999999999999999 6777764 56799999999999999999999999
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
+++|+++.+ ..+++|+.||.|++||+++.+.......+..+|.++.++|+++++++++. ++.+++||..++....
T Consensus 151 ~v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~ 225 (311)
T d1nr0a1 151 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 225 (311)
T ss_dssp EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred cccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----cccccccccccccccc
Confidence 999976432 35889999999999999999888899999999999999999999999876 5669999999998877
Q ss_pred EEeccc----ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCe
Q 001367 570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1091)
Q Consensus 570 ~~~~~~----~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1091)
.+.... .|...|.+++|+|++++|++|+.||.|+|||+++++++..+..+... ....+.+.+++..+++++.||.
T Consensus 226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred cccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence 765422 23478999999999999999999999999999999999998776432 2334556666778999999999
Q ss_pred EEEEECC
Q 001367 646 IKILETP 652 (1091)
Q Consensus 646 i~iwd~~ 652 (1091)
|++||.+
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999964
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.1e-34 Score=312.56 Aligned_cols=315 Identities=20% Similarity=0.302 Sum_probs=264.3
Q ss_pred EEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEe
Q 001367 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 548 (1091)
.|.. .....++++||.++|++++|+| ++.+|++|+.||+|++||+++++....+..|...|.+++|+|++.+++++.
T Consensus 2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~ 78 (317)
T d1vyhc1 2 EWIP-RPPEKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78 (317)
T ss_dssp CCCC-CSSCSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ccCC-CCCccEEEcCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence 4543 3445678999999999999965 567999999999999999999999999999999999999999999999987
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceE
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1091)
. +..+..|+....+....+.++. ..+.++.|+|+++.+++++.|+.+++||+.+++.+..+..+.. .+.++
T Consensus 79 ~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (317)
T d1vyhc1 79 A----DMTIKLWDFQGFECIRTMHGHD---HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMV 149 (317)
T ss_dssp T----TSCCCEEETTSSCEEECCCCCS---SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred c----cccccccccccccccccccccc---ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC--cceee
Confidence 6 4558889988888887777776 8899999999999999999999999999999999998887654 68899
Q ss_pred EEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccc
Q 001367 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENK 708 (1091)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~ 708 (1091)
+|+++++++++++.|+.|++|+..++.....+..+...+.++++.
T Consensus 150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------------------------- 194 (317)
T d1vyhc1 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA----------------------------------- 194 (317)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-----------------------------------
T ss_pred ecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEe-----------------------------------
Confidence 999999999999999999999999887776666665555555553
Q ss_pred cccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCC
Q 001367 709 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 788 (1091)
Q Consensus 709 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1091)
|++......
T Consensus 195 ----------------------------------~~~~~~~~~------------------------------------- 203 (317)
T d1vyhc1 195 ----------------------------------PESSYSSIS------------------------------------- 203 (317)
T ss_dssp ----------------------------------CSCGGGGGG-------------------------------------
T ss_pred ----------------------------------eccccceee-------------------------------------
Confidence 332210000
Q ss_pred ceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 001367 789 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 867 (1091)
Q Consensus 789 ~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i 867 (1091)
............++.++++++ |+.|++||+.+++++.++.+|...|.+++|+| ++++|++|+.||.|
T Consensus 204 -----------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i 271 (317)
T d1vyhc1 204 -----------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTL 271 (317)
T ss_dssp -----------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEE
T ss_pred -----------ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCeE
Confidence 000111122234566777777 79999999999999999999999999999999 89999999999999
Q ss_pred EEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 868 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 868 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
++||+.+++++..+.+|.++|++++|+|++++|+|++.||+|+|||
T Consensus 272 ~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 272 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999999999999999999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.7e-34 Score=321.79 Aligned_cols=303 Identities=15% Similarity=0.231 Sum_probs=240.3
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 410 (1091)
.+|++.|+||+|||||+ +||+|+ |++|+|||+.+++.+.......... ............+|...|.+++|+|+|++
T Consensus 59 ~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp EECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSE
T ss_pred CCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeeccccccc-ccccccccccccCCCCCEEEEEECCCCCc
Confidence 37999999999999998 679987 8999999999998876422110000 00011122235578899999999999999
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEE
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 490 (1091)
|++|+.||.|++||...++.+. .+.+|...|.+++|++++. .+++++.++.+++||..+.........+...+ .
T Consensus 136 l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~ 209 (388)
T d1erja_ 136 LATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-T 209 (388)
T ss_dssp EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSSCEE-E
T ss_pred ceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeeccccccccccccccccc-c
Confidence 9999999999999999886554 6778999999999999999 79999999999999999988887776555544 4
Q ss_pred EeecccCCceEEEEEecCCeEEEEecCCCCceeee-------cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
+.+. ..++.+|++++.||.|++|+..+......+ ..+...|.+++|+|++++|++++. ++.|++||+.
T Consensus 210 ~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~iwd~~ 284 (388)
T d1erja_ 210 VAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQ 284 (388)
T ss_dssp EEEC-STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC-
T ss_pred cccc-CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEEEEecc
Confidence 4444 346789999999999999999987766543 345678999999999999999986 6679999998
Q ss_pred Cceee------------EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE--
Q 001367 564 EGAIK------------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-- 629 (1091)
Q Consensus 564 ~~~~~------------~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-- 629 (1091)
++... .....| ...|.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .|.+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~~~~ 359 (388)
T d1erja_ 285 NANNKSDSKTPNSGTCEVTYIGH---KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVA 359 (388)
T ss_dssp --------------CEEEEEECC---SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEC
T ss_pred CCccccccccccccceeeecccc---cceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEEEEe
Confidence 66432 223333 37899999999999999999999999999999999999988755 577776
Q ss_pred ----EccCCCEEEEEECCCeEEEEECC
Q 001367 630 ----FNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 630 ----~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
|+|++++|++|+.||+|++|+++
T Consensus 360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 360 NGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 56789999999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-33 Score=311.18 Aligned_cols=283 Identities=13% Similarity=0.175 Sum_probs=241.5
Q ss_pred CCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeE--EEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+|...|.+++|||+|++||+|+ ||.|+|||+.++....... ...+|.+.|.+++|+||++ +|++++.|+.|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeeccccccccc
Confidence 6999999999999999999987 8999999998765443322 3457999999999999999 899999999999999
Q ss_pred CCC--CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 472 AVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 472 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
+.. ++....+..|...+..++++ +++.++++++.|+.|++|++.+.+.......+...+.+++|++++..+++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~ 203 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 874 45667788899999999985 46789999999999999999999888888889999999999999999999876
Q ss_pred CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
++.+++||+.+++.+..+.. . ..|.+++|+|+++++++++.|+.+++||+.+++..... .+ ...|.+++
T Consensus 204 ----d~~v~i~d~~~~~~~~~~~~-~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~--~~~i~~v~ 272 (337)
T d1gxra_ 204 ----DNTVRSWDLREGRQLQQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH-LH--ESCVLSLK 272 (337)
T ss_dssp ----TSEEEEEETTTTEEEEEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC-CC--SSCEEEEE
T ss_pred ----cccccccccccceeeccccc-c---cceEEEEEcccccccceecccccccccccccccccccc-cc--ccccceEE
Confidence 67799999999998877653 3 68999999999999999999999999999988876443 23 34689999
Q ss_pred EccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccc
Q 001367 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKS 709 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i 709 (1091)
|+|++++|++++.||.|++||..+++.+....
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------------------------------------------ 304 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------------------------------------------ 304 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------------------------------------------------
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc------------------------------------------------
Confidence 99999999999999999999988775543221
Q ss_pred ccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeec
Q 001367 710 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 710 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
|...|.+++|+|++++|++++.||.|++||+
T Consensus 305 ----------------------~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 305 ----------------------ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ----------------------CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ----------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 4456778888888888888888888888874
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-33 Score=316.44 Aligned_cols=347 Identities=15% Similarity=0.232 Sum_probs=261.8
Q ss_pred EEEECCCEEEEEEeeCCcccce-eEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 490 (1091)
..+..++...+|+....+.... +....+|.+.|++++|+|||+ +|++|+ |+.|+|||+.+++.+..+..+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence 3456777888999776554321 223347999999999999999 888887 899999999999999888766543322
Q ss_pred EeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEE
Q 001367 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1091)
... + .......+...|.+++|+|++++|++++. ++.|++||...++.+..
T Consensus 109 ~~~--------~------------------~~~~~~~~~~~V~~l~~s~~~~~l~s~~~----dg~v~i~~~~~~~~~~~ 158 (388)
T d1erja_ 109 PEN--------L------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAE----DRLIRIWDIENRKIVMI 158 (388)
T ss_dssp ------------------------------------CCCCBEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEE
T ss_pred ccc--------c------------------ccccccCCCCCEEEEEECCCCCcceeccc----ccccccccccccccccc
Confidence 110 0 01112345668999999999999999986 56799999999999999
Q ss_pred EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc-CCCEEEEEECCCeEEEE
Q 001367 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKIL 649 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw 649 (1091)
+.+|. ..|.++.+++++..+++++.++.+++||..+.........+.. ...+.+.+ ++++|++++.|+.|++|
T Consensus 159 ~~~h~---~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~ 232 (388)
T d1erja_ 159 LQGHE---QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVW 232 (388)
T ss_dssp ECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEE
T ss_pred ccccc---ccccccccccccccccccccceeeeeeeccccccccccccccc---cccccccCCCCCeEEEEcCCCeEEEe
Confidence 98887 8999999999999999999999999999999988877765543 34555554 88999999999999999
Q ss_pred ECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCC
Q 001367 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 729 (1091)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~ 729 (1091)
+..++.....+..... ..
T Consensus 233 ~~~~~~~~~~~~~~~~--------------------------------------------------------------~~ 250 (388)
T d1erja_ 233 DSETGFLVERLDSENE--------------------------------------------------------------SG 250 (388)
T ss_dssp ETTTCCEEEEEC--------------------------------------------------------------------
T ss_pred ecccCccceeeccccc--------------------------------------------------------------cc
Confidence 9987765543321100 00
Q ss_pred ccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEe
Q 001367 730 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 809 (1091)
Q Consensus 730 ~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 809 (1091)
.+|...|.+++|+|+++.|++++.||.+++|++..... ... ..
T Consensus 251 ~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~----------------------~~~--------------~~- 293 (388)
T d1erja_ 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN----------------------KSD--------------SK- 293 (388)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------------------------------------------
T ss_pred cCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc----------------------ccc--------------cc-
Confidence 12667888889999998888888889998888643211 000 00
Q ss_pred cCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeE
Q 001367 810 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 889 (1091)
Q Consensus 810 s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~ 889 (1091)
....+........|...|++++|+| ++++|++|+.||.|++||+.+++++.++.+|.+.|+
T Consensus 294 ------------------~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~ 354 (388)
T d1erja_ 294 ------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354 (388)
T ss_dssp -----------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ------------------cccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence 0011223344456888999999999 899999999999999999999999999999999999
Q ss_pred EEEE------CCCCCEEEEEeCCCcEEEEEcC
Q 001367 890 GLVF------SDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 890 ~l~~------spdg~~las~s~Dg~i~vwd~~ 915 (1091)
++++ +|++++||||+.||+|+||+++
T Consensus 355 ~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 355 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9975 6789999999999999999985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.7e-33 Score=308.88 Aligned_cols=295 Identities=19% Similarity=0.267 Sum_probs=257.5
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
....++|.||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+.. +.+|...|.+++
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~ 104 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeE
Confidence 456789999999999999999998 679999999999999999987765 667999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCccc-ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
|+|+++++++|+.|+.+.+|+....... .....+.+|...........+. .+.....|.....|+...........
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (340)
T d1tbga_ 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred eeccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccc
Confidence 9999999999999999999998765432 2334567788777766666554 57888889999999988888777777
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
.+...+....+. +.+.++++++.|+.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||+
T Consensus 182 ~~~~~~~~~~~~--~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~ 255 (340)
T d1tbga_ 182 GHTGDVMSLSLA--PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEEC--TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred ccceeEeeeccc--cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEee
Confidence 788888888774 45579999999999999999999999999999999999999999999999986 667999999
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
........+.... +...+.+++|+|++++|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+.
T Consensus 256 ~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~ 332 (340)
T d1tbga_ 256 RADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp TTTEEEEEECCTT-CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEET
T ss_pred ccccccccccccc-ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEcc
Confidence 9988877765433 346799999999999999999999999999999999999987754 7999999999999999999
Q ss_pred CCeEEEEE
Q 001367 643 ENRIKILE 650 (1091)
Q Consensus 643 dg~i~iwd 650 (1091)
||.|++||
T Consensus 333 Dg~v~iWd 340 (340)
T d1tbga_ 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-33 Score=303.31 Aligned_cols=294 Identities=13% Similarity=0.153 Sum_probs=229.8
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+.+++.||.+.|++++|||||+ +||+|+.||+|++||+.+++.+.. ...+|...|++++|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~ 63 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKT 63 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEE
T ss_pred ccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEe
Confidence 46789999999999999999998 679999999999999999987753 13469999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
+|+|+++ +++.|+.+++|+...............|...+.+++|+++++ +++++ .++.+++|+... ..... .
T Consensus 64 ~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~-~~~~i~~~~~~~--~~~~~--~ 135 (299)
T d1nr0a2 64 TSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAA-CYKHIAIYSHGK--LTEVP--I 135 (299)
T ss_dssp CTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEE-ESSEEEEEETTE--EEEEE--C
T ss_pred eccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--ccccc-cccccccccccc--ccccc--c
Confidence 9999755 556789999999876543222223446778899999999998 45544 467899998443 22222 3
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
...+.+++++ +++.++++++.||.|++||+++..... ....+...|.+++|+|+++++++++. ++.|++||+.
T Consensus 136 ~~~~~~~~~s--~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~ 209 (299)
T d1nr0a2 136 SYNSSCVALS--NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVA 209 (299)
T ss_dssp SSCEEEEEEC--TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGG
T ss_pred cccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccc
Confidence 3456777885 467899999999999999998766543 44567789999999999999999876 5569999998
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-CCCCceEEEccCCCEEEEEEC
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
++...........|...|.+++|+|+++++++|+.||.|++||++++..........+ ...+.++ +++++++|++++.
T Consensus 210 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~ 288 (299)
T d1nr0a2 210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQ 288 (299)
T ss_dssp GTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEET
T ss_pred ccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeC
Confidence 8776655444433458999999999999999999999999999998765444433322 2334444 5566789999999
Q ss_pred CCeEEEEECC
Q 001367 643 ENRIKILETP 652 (1091)
Q Consensus 643 dg~i~iwd~~ 652 (1091)
|+.|++||+.
T Consensus 289 D~~i~iWdl~ 298 (299)
T d1nr0a2 289 DSNIKFWNVP 298 (299)
T ss_dssp TSCEEEEECC
T ss_pred CCEEEEEecc
Confidence 9999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-32 Score=305.47 Aligned_cols=344 Identities=17% Similarity=0.260 Sum_probs=243.0
Q ss_pred eeeecCCCccE-EEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcE
Q 001367 389 TALVRDPGVSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 389 ~~~~~~h~~~V-~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1091)
+.+|.||...| +|++| ++++||+|+.||+|+|||+.+++.+. ++.+|.++|.+++|+|++ +|++++.|+.|
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i 76 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTV 76 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCE
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccc
Confidence 34588998886 56555 68899999999999999999986554 788999999999999864 69999999999
Q ss_pred EEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
++|++...+.......+............+++.++++++.|+.|++||+................ .....+.
T Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~------- 148 (355)
T d1nexb2 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPE------- 148 (355)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCTT-------
T ss_pred ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceeccc-------
Confidence 99999999888777666655555555556788899999999999999987655433222111100 0111111
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
...........+. ..+. .+.++++.++++..|+.|++||+.+++.+.....+.. .+.+
T Consensus 149 ---------------~~~~~~~~~~~~~---~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~ 206 (355)
T d1nexb2 149 ---------------ENPYFVGVLRGHM---ASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYS 206 (355)
T ss_dssp ---------------TCTTEEEEEECCS---SCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEE
T ss_pred ---------------cccceeeeeeecc---cccc--ccccccceeeeecccceeeeeecccccceeeeecccc--cccc
Confidence 1111122222222 3343 3456788999999999999999999999888775544 5789
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
+.++|++.++++++.|+.|++|+..++..+..+.+
T Consensus 207 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--------------------------------------------- 241 (355)
T d1nexb2 207 TIYDHERKRCISASMDTTIRIWDLENGELMYTLQG--------------------------------------------- 241 (355)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC---------------------------------------------
T ss_pred ccccccceeeecccccceEEeeecccccccccccc---------------------------------------------
Confidence 99999999999999999999999886654443332
Q ss_pred ccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCC
Q 001367 708 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 787 (1091)
Q Consensus 708 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1091)
T Consensus 242 -------------------------------------------------------------------------------- 241 (355)
T d1nexb2 242 -------------------------------------------------------------------------------- 241 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEE-EEcCCCCcEEEEEeCCC
Q 001367 788 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSL-AFNPHDNNVIAIGMDDS 865 (1091)
Q Consensus 788 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l-~~s~~~~~~la~g~~dg 865 (1091)
|...|.+++++ ++++++++ ||.|++||+.++..... .|...+.++ ++++ ++++|++|+ ||
T Consensus 242 ------------h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~~g~-d~ 303 (355)
T d1nexb2 242 ------------HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYV-SDNILVSGS-EN 303 (355)
T ss_dssp ------------CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEE-CSSEEEEEE-TT
T ss_pred ------------ccccccccccc--cceeeeeecccccccccccccceecc--cccCCceEEEEEcC-CCCEEEEEe-CC
Confidence 33334444443 23445444 45566666555443322 234444444 4566 777777665 89
Q ss_pred eEEEEeccCcceee-eeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q 001367 866 TILIYNARSSEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 914 (1091)
Q Consensus 866 ~i~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~ 914 (1091)
.|++||+++++++. .+.+|.++|++++|+|+ .++++++.||+++||.+
T Consensus 304 ~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 304 QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 99999999999885 57889999999999987 57888999999777654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.1e-33 Score=313.57 Aligned_cols=264 Identities=11% Similarity=0.046 Sum_probs=209.2
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 413 (1091)
.++|+|++|||||+ +||+|+.||.|+|||+.+++.... ..+.+|..+|.+++|+|++++||+
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEE-----------------EEecCCCCCEEEEEECCCCCEEEE
Confidence 35899999999998 679999999999999988764432 127789999999999999999999
Q ss_pred EECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee----EEecCCCcceE
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPVY 489 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~ 489 (1091)
|+.|++|+|||+.++.... ...+.+|...|.+++|+|+++ .+++++.|+.|++|++...... .....|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeeccccccc-ccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 9999999999999865332 335678999999999999999 8999999999999998776543 34567899999
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
+++|+| ++.+|++++.||.|++|+............. +. ..+...++...
T Consensus 146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~----------~~------------------~~~~~~~~~~~ 195 (371)
T d1k8kc_ 146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT----------PW------------------GSKMPFGELMF 195 (371)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCB----------TT------------------BSCCCTTCEEE
T ss_pred cccccc--cccceeccccCcEEEEEeeccCccccccccc----------cc------------------cccccceeeee
Confidence 999954 6789999999999999998654322111100 00 00112233444
Q ss_pred EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEE
Q 001367 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1091)
Q Consensus 570 ~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1091)
...+|. ..|.+++|+|+++++++++.|+.|++||+.+++.+..+..+.. .|.+++|+|+++++++|. |+.+++|
T Consensus 196 ~~~~~~---~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g~-d~~~~~~ 269 (371)
T d1k8kc_ 196 ESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGH-DCFPVLF 269 (371)
T ss_dssp ECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEET-TSSCEEE
T ss_pred eccCcc---CcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc--cceeeeecCCCCEEEEEc-CCceEEE
Confidence 445555 7899999999999999999999999999999999998887654 689999999998887655 6766666
Q ss_pred ECCCC
Q 001367 650 ETPES 654 (1091)
Q Consensus 650 d~~~~ 654 (1091)
.....
T Consensus 270 ~~~~~ 274 (371)
T d1k8kc_ 270 TYDSA 274 (371)
T ss_dssp EEETT
T ss_pred EeeCC
Confidence 55443
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-32 Score=297.49 Aligned_cols=287 Identities=11% Similarity=0.095 Sum_probs=230.0
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
....++++|+|+.|+.+. ++.+.+|++.+......+.+
T Consensus 19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~----------------------------------------- 56 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE----------------------------------------- 56 (311)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC-----------------------------------------
T ss_pred CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcC-----------------------------------------
Confidence 356789999999999886 56799999886644433322
Q ss_pred ccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCcccc
Q 001367 704 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 783 (1091)
Q Consensus 704 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 783 (1091)
|...|.+++|+|+|++|++++.||.+++|++.....
T Consensus 57 ----------------------------H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~---------------- 92 (311)
T d1nr0a1 57 ----------------------------HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---------------- 92 (311)
T ss_dssp ----------------------------CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC----------------
T ss_pred ----------------------------CCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc----------------
Confidence 566788888899999999999999999998754321
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeC---CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEE
Q 001367 784 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 860 (1091)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~ 860 (1091)
.....+. .|...|.+++|+|++++++++++ ..+++|++++++...++.+|...|++++|+|++..+|++
T Consensus 93 ------~~~~~~~--~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~s 164 (311)
T d1nr0a1 93 ------ILKTTIP--VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164 (311)
T ss_dssp ------CEEEEEE--CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred ------ccccccc--cccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecc
Confidence 1111122 37889999999999999999874 459999999999999999999999999999943346889
Q ss_pred EeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeee--eccCCCcCCCCCc
Q 001367 861 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL--QTPDGVMTLAPSE 938 (1091)
Q Consensus 861 g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~i 938 (1091)
|+.||.|++||+.+++....+.+|..+|++++|+|++++|++++.|+.|++||+.++........ ....+|.. .|
T Consensus 165 gs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~---~V 241 (311)
T d1nr0a1 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG---SV 241 (311)
T ss_dssp EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS---CE
T ss_pred cccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccc---cc
Confidence 99999999999999999999999999999999999999999999999999999998654321111 11233443 79
Q ss_pred eEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 939 THIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 939 ~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
.+++|+|+|++|++ +.|+.|+|||+.+++++..+...+......+.+.+++.+|++++.||.|++||.+
T Consensus 242 ~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 99999999999999 5789999999999999887654433333344555567789999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-32 Score=305.23 Aligned_cols=345 Identities=15% Similarity=0.200 Sum_probs=265.5
Q ss_pred eeeecCCCCcE-EEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC
Q 001367 522 RVDYDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1091)
Q Consensus 522 ~~~~~~~~~~i-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg 600 (1091)
+.++.+|...| +|+ ++++++|++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|+ +++++++.|+
T Consensus 5 ~~tL~GH~~~vitc~--~~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~s~~-~~l~s~s~D~ 74 (355)
T d1nexb2 5 RTTLRGHMTSVITCL--QFEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHG-GILVSGSTDR 74 (355)
T ss_dssp EEEEECCSSSCEEEE--EEETTEEEEEET----TTEEEEEETTTTEEEEEEECCS---SCEEEEEEETT-TEEEEEETTC
T ss_pred cEEECCcCCCcEEEE--EECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCC---CCEEEEEEcCC-CEEEEEeccc
Confidence 44677887775 444 557889999986 6779999999999999999988 89999999985 6899999999
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccccc
Q 001367 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1091)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1091)
+|++|+....+..................+.+++.++++++.|+.|++|++.+..............
T Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~------------- 141 (355)
T d1nexb2 75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP------------- 141 (355)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-------------
T ss_pred ccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-------------
Confidence 9999999999888877666554445667788999999999999999999988664332221100000
Q ss_pred ccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCC-eEEEeecCceEEE
Q 001367 681 AGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLM 759 (1091)
Q Consensus 681 ~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~dg~i~v 759 (1091)
.....+... .++....
T Consensus 142 ---------------------------------------------------------~~~~~~~~~~~~~~~~~------ 158 (355)
T d1nexb2 142 ---------------------------------------------------------LVFHTPEENPYFVGVLR------ 158 (355)
T ss_dssp ---------------------------------------------------------EEESCTTTCTTEEEEEE------
T ss_pred ---------------------------------------------------------cceeccccccceeeeee------
Confidence 000000000 0000000
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEe
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI 838 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~ 838 (1091)
.|...+ ..+.+++++++++. |+.|++||+.+++.+...
T Consensus 159 ---------------------------------------~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 197 (355)
T d1nexb2 159 ---------------------------------------GHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 197 (355)
T ss_dssp ---------------------------------------CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ---------------------------------------eccccc--cccccccceeeeecccceeeeeecccccceeee
Confidence 122233 34456778888887 799999999999999999
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001367 839 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 918 (1091)
Q Consensus 839 ~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~ 918 (1091)
..+...+.++.|+| ++.++++++.|+.|++||+.++..+..+.+|...|.+++|++ ++|++++.||.|++||+.+..
T Consensus 198 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 198 SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp CCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC
T ss_pred eccccccccccccc-cceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccccccc
Confidence 99999999999999 889999999999999999999999999999999999999974 699999999999999998854
Q ss_pred eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC
Q 001367 919 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 998 (1091)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d 998 (1091)
.. +.. |.. .......|++++++++++.|+.|++||+++++++.....+|...|.+++|+|+ .++++++.|
T Consensus 275 ~~----~~~---~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~d 344 (355)
T d1nexb2 275 RK----FSY---HHT--NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKD 344 (355)
T ss_dssp EE----EEE---ECT--TCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESS
T ss_pred ee----ccc---ccC--CceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECC
Confidence 22 221 221 12233567889999999999999999999999988777889999999999987 478888999
Q ss_pred CcEEEEeC
Q 001367 999 GTLSIHEA 1006 (1091)
Q Consensus 999 g~v~iwd~ 1006 (1091)
|+++||.+
T Consensus 345 g~~~l~~~ 352 (355)
T d1nexb2 345 GQSFLEIL 352 (355)
T ss_dssp SCEEEEEE
T ss_pred CcEEEEEE
Confidence 99777654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5e-32 Score=298.64 Aligned_cols=286 Identities=14% Similarity=0.183 Sum_probs=257.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
|.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+. .+.+|..+|.+++|+|+++ ++++++.|+.+++|+
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence 88999999999999999999999999999999999986554 6789999999999999999 899999999999999
Q ss_pred CCCCc----eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 472 AVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 472 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
..... ....+.+|........... +..+.....+.....+.................+....+.+.+.+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 76543 4456777877766655432 3478888999999999988887777788888889999999999999998
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
.. ++.|++||+.+++.+..+.+|. ..|.+++|+|+++++++|+.||.|++|++........+........+.+
T Consensus 203 ~~----d~~v~i~d~~~~~~~~~~~~h~---~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (340)
T d1tbga_ 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TTEEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred ec----CceEEEEECCCCcEEEEEeCCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence 76 6679999999999999999887 8999999999999999999999999999999999888876666667899
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
++|+|++++|++|+.||.|++||+.+++.+..+.+|...|++++| +|+++++++++.||
T Consensus 276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~---------------------s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV---------------------TDDGMAVATGSWDS 334 (340)
T ss_dssp EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE---------------------CTTSSCEEEEETTS
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEE---------------------eCCCCEEEEEccCC
Confidence 999999999999999999999999999999999999999999999 78899999999999
Q ss_pred cccccc
Q 001367 708 KSEVEK 713 (1091)
Q Consensus 708 ~i~~w~ 713 (1091)
+|++||
T Consensus 335 ~v~iWd 340 (340)
T d1tbga_ 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-30 Score=286.97 Aligned_cols=329 Identities=16% Similarity=0.226 Sum_probs=259.4
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
+..++|+||++.|.+ +++++|+ +||||+.||+|+|||+.+++++.. +.+|...|.+++|
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~ 65 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQM 65 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEE
T ss_pred CcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEEe
Confidence 456789999999976 4777888 679999999999999999998765 7789999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
+|+ +|++|+.|+++++|+........ ....+...+....+.+ . .+..+..|+.+.+|+..+++....+..+
T Consensus 66 ~~~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 136 (342)
T d2ovrb2 66 RDN--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGH 136 (342)
T ss_dssp ETT--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred CCC--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeecc
Confidence 975 99999999999999998765332 3444555566555543 3 5778899999999999999888777655
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
......... ....++.++.|+.|++||.........+..+...+.. +++++.++++++. ++.|++||+..
T Consensus 137 ~~~~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~----dg~i~~~d~~~ 206 (342)
T d2ovrb2 137 VAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSL----DTSIRVWDVET 206 (342)
T ss_dssp SSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEET----TSCEEEEETTT
T ss_pred cccceeecc----ccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeC----CCeEEEeeccc
Confidence 554443322 3357899999999999999988888888877766654 4557889999986 56699999999
Q ss_pred ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC
Q 001367 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
++.+..+.+|. ..+.++++++ +++++++.|+.|++||....+....+..+... .....++.++++++++++.||
T Consensus 207 ~~~~~~~~~~~---~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~s~Dg 280 (342)
T d2ovrb2 207 GNCIHTLTGHQ---SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFNKNFVITSSDDG 280 (342)
T ss_dssp CCEEEEECCCC---SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEECSSEEEEEETTS
T ss_pred ceeeeEecccc---cceeEEecCC--CEEEEEcCCCEEEEEeccccccccccccccee-eeceeecccCCCeeEEEcCCC
Confidence 99999998877 7888877764 69999999999999999999888887654321 223344555678999999999
Q ss_pred eEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccce
Q 001367 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 724 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 724 (1091)
.|++||+.+++.+..+....
T Consensus 281 ~i~iwd~~tg~~i~~~~~~~------------------------------------------------------------ 300 (342)
T d2ovrb2 281 TVKLWDLKTGEFIRNLVTLE------------------------------------------------------------ 300 (342)
T ss_dssp EEEEEETTTCCEEEEEEECT------------------------------------------------------------
T ss_pred EEEEEECCCCCEEEEEeccc------------------------------------------------------------
Confidence 99999999887665443110
Q ss_pred eecCCccccccEEEEEEecCCCeEEEeecCce----EEEeecC
Q 001367 725 LLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWP 763 (1091)
Q Consensus 725 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~----i~vw~~~ 763 (1091)
..+|...|.+++|+|++..+++++.||+ +++||++
T Consensus 301 ----~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 301 ----SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp ----TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred ----CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 0125667889999999988888888874 8888875
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.5e-31 Score=283.40 Aligned_cols=293 Identities=12% Similarity=0.100 Sum_probs=227.1
Q ss_pred CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCccc
Q 001367 610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1091)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~ 689 (1091)
|+..+.+.+|.. .|.+++|+|++++|++|+.||+|++||+.+++....+.
T Consensus 2 g~~~~~~~GH~~--~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~---------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP---------------------------- 51 (299)
T ss_dssp TEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS----------------------------
T ss_pred CccceEcCCCCC--CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc----------------------------
Confidence 566777777755 79999999999999999999999999998775543321
Q ss_pred CCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccccc
Q 001367 690 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 769 (1091)
Q Consensus 690 ~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~ 769 (1091)
..|...|.+++|+|+|+ +++++.|+.+++|+........
T Consensus 52 ----------------------------------------~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~ 90 (299)
T d1nr0a2 52 ----------------------------------------DVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDS 90 (299)
T ss_dssp ----------------------------------------CSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCT
T ss_pred ----------------------------------------CCCCCcEEEEEeeccce-eecccceeeEEEeccCCccccc
Confidence 12566788899999987 6677789999999865432100
Q ss_pred ccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEE
Q 001367 770 STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA 849 (1091)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 849 (1091)
.. .. ...+...+.+++++|++++++++.++.+.+|+... ..... ....+.+++
T Consensus 91 -----------------~~-~~-----~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~ 143 (299)
T d1nr0a2 91 -----------------SK-AV-----ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCVA 143 (299)
T ss_dssp -----------------TS-CC-----EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEEE
T ss_pred -----------------cc-cc-----ccccccccccccccccccccccccccccccccccc--ccccc--ccccccccc
Confidence 00 00 01256778999999999999999999999998543 22222 345678999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeccCcceee-eeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecc
Q 001367 850 FNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP 928 (1091)
Q Consensus 850 ~s~~~~~~la~g~~dg~i~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~ 928 (1091)
|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+.|++||+.++... ......
T Consensus 144 ~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~~~ 220 (299)
T d1nr0a2 144 LSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL--AHTNSW 220 (299)
T ss_dssp ECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE--SCCCCC
T ss_pred ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccc
Confidence 999 89999999999999999999877543 44569999999999999999999999999999999875422 123344
Q ss_pred CCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeee-ecCC-ccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 929 DGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW-FPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 929 ~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~-~~~h-~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
.+|.. .|.+++|+|++++|++ +.|+.|++||+.++...... ...| ...+..+ +++++++|++++.||+|++||
T Consensus 221 ~~h~~---~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 221 TFHTA---KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp CCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEE
T ss_pred ccccc---ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEe
Confidence 55554 7999999999999999 57899999999987654332 2233 4556665 456778999999999999999
Q ss_pred CC
Q 001367 1006 AS 1007 (1091)
Q Consensus 1006 ~~ 1007 (1091)
++
T Consensus 297 l~ 298 (299)
T d1nr0a2 297 VP 298 (299)
T ss_dssp CC
T ss_pred cc
Confidence 84
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.9e-31 Score=294.18 Aligned_cols=306 Identities=13% Similarity=0.119 Sum_probs=235.5
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce--eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001367 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1091)
Q Consensus 529 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd 606 (1091)
..+|++++|+|||++|++++. ++.|++||..+++ .+..+.+|. ..|.+++|+|++++|++++.|++|++||
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~---~~V~~l~fsp~~~~l~s~s~D~~i~vWd 79 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWT 79 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCC---CCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence 357999999999999999875 5679999998775 566677777 8999999999999999999999999999
Q ss_pred CCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCC
Q 001367 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1091)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g 686 (1091)
+.++.....+....+...|.+++|+|+++.+++++.|+.+++|+...........
T Consensus 80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~------------------------- 134 (371)
T d1k8kc_ 80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK------------------------- 134 (371)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-------------------------
T ss_pred ecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc-------------------------
Confidence 9988877666655555679999999999999999999999999876442211110
Q ss_pred cccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcc
Q 001367 687 SVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 766 (1091)
Q Consensus 687 ~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~ 766 (1091)
.....|...|.+++|+|++++|++++.||.+++|+.....
T Consensus 135 ----------------------------------------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~ 174 (371)
T d1k8kc_ 135 ----------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 174 (371)
T ss_dssp ----------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred ----------------------------------------ccccccccccccccccccccceeccccCcEEEEEeeccCc
Confidence 0011256788999999999999999999999999976543
Q ss_pred cccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCe
Q 001367 767 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA 845 (1091)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i 845 (1091)
.... .....|+........... ..+|...|.+++|+|+|++|++++ |+.|++||+.+++.+..+..|..+|
T Consensus 175 ~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 246 (371)
T d1k8kc_ 175 VEER------PAPTPWGSKMPFGELMFE--SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246 (371)
T ss_dssp TSCC------CCCBTTBSCCCTTCEEEE--CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCE
T ss_pred cccc------cccccccccccceeeeee--ccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccc
Confidence 2111 111222222221111111 225888999999999999999998 7999999999999999999999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeccCc--cee---------------------------------------eeeccc
Q 001367 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVI---------------------------------------SKLEGH 884 (1091)
Q Consensus 846 ~~l~~s~~~~~~la~g~~dg~i~iwd~~~~--~~~---------------------------------------~~l~~h 884 (1091)
.+++|+| ++++|++|. |+.+++|..... ... .....|
T Consensus 247 ~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 324 (371)
T d1k8kc_ 247 LAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH 324 (371)
T ss_dssp EEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSS
T ss_pred eeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccc
Confidence 9999999 888888665 676666654321 110 001138
Q ss_pred cCCeEEEEECCCC----CEEEEEeCCCcEEEEEcCC
Q 001367 885 SKRVTGLVFSDAL----NILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 885 ~~~V~~l~~spdg----~~las~s~Dg~i~vwd~~~ 916 (1091)
.+.|+++++.+.+ ..++|+|.||.|++||+++
T Consensus 325 ~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 325 KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 8899999998754 4689999999999999976
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-30 Score=287.06 Aligned_cols=320 Identities=20% Similarity=0.285 Sum_probs=246.0
Q ss_pred eeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEE
Q 001367 433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 512 (1091)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 512 (1091)
....++||.+.|.+ +++++|+ +|+||+.||+|+|||+.++++++++.+|...|.++++++ .+|++++.|+.++
T Consensus 8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~ 80 (342)
T d2ovrb2 8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK 80 (342)
T ss_dssp CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence 34478999999865 4667888 899999999999999999999999999999999999953 3899999999999
Q ss_pred EEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCE
Q 001367 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1091)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 592 (1091)
+|+................+...... ...+..+.. ++.+.+|+..+++....+.... ... ....+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~ 149 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHV---AAV--RCVQYDGRR 149 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCS---SCE--EEEEECSSC
T ss_pred ccccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeeccc---ccc--eeeccccce
Confidence 99998877777666666666555443 345555554 6679999999998877776544 222 234456678
Q ss_pred EEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeee
Q 001367 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
+++++.|+.|++||....+.+..+..+.. ....+++++.++++++.||.|++||+..++.+....+
T Consensus 150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~---------- 215 (342)
T d2ovrb2 150 VVSGAYDFMVKVWDPETETCLHTLQGHTN----RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG---------- 215 (342)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECCCSS----CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC----------
T ss_pred eeeecCCCeEEEeecccceeeEEEcCccc----ccccccCCCCEEEEEeCCCeEEEeecccceeeeEecc----------
Confidence 89999999999999999999888876543 5566777899999999999999999876544332221
Q ss_pred ccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEee
Q 001367 673 NPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 752 (1091)
Q Consensus 673 ~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 752 (1091)
T Consensus 216 -------------------------------------------------------------------------------- 215 (342)
T d2ovrb2 216 -------------------------------------------------------------------------------- 215 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccC
Q 001367 753 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT 831 (1091)
Q Consensus 753 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~ 831 (1091)
|...+.+++++ ++++++++ |+.|++||+..
T Consensus 216 -----------------------------------------------~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~ 246 (342)
T d2ovrb2 216 -----------------------------------------------HQSLTSGMELK--DNILVSGNADSTVKIWDIKT 246 (342)
T ss_dssp -----------------------------------------------CCSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred -----------------------------------------------cccceeEEecC--CCEEEEEcCCCEEEEEeccc
Confidence 22333333332 34555555 56666666666
Q ss_pred ceeEEEecC---CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec-----cccCCeEEEEECCCCCEEEEE
Q 001367 832 FKTILTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSKRVTGLVFSDALNILVSS 903 (1091)
Q Consensus 832 ~~~~~~~~~---~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg~~las~ 903 (1091)
.+....+.. |...+.++++++ +++++|+.||+|++||+.+++.+..+. +|.+.|++++|+|++.+||+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g 323 (342)
T d2ovrb2 247 GQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323 (342)
T ss_dssp CCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred ccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEE
Confidence 665555543 445667777754 599999999999999999999887763 588899999999999999999
Q ss_pred eCCCc----EEEEEcCC
Q 001367 904 GGDAQ----IFVWDVDG 916 (1091)
Q Consensus 904 s~Dg~----i~vwd~~~ 916 (1091)
+.||+ |++||++.
T Consensus 324 ~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 324 SRNGTEETKLLVLDFDV 340 (342)
T ss_dssp CSSSSSCCEEEEEECCC
T ss_pred eCCCCCeeEEEEEeCCC
Confidence 99986 99999975
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=2.9e-30 Score=281.73 Aligned_cols=290 Identities=12% Similarity=0.176 Sum_probs=224.9
Q ss_pred CcEEEEEcCCCceEEEEEcC-CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCC-CccEEEEEECC--CCCEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSP--DGSLL 411 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~-dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp--dg~~l 411 (1091)
.+++++|+|+|+.+ |.++. ...|+.|+....+.... ..+.+| ...|++++|+| +|.+|
T Consensus 19 ~~t~l~~~~~~~~l-a~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~l 80 (325)
T d1pgua1 19 FTTHLSYDPTTNAI-AYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQYL 80 (325)
T ss_dssp CCCCCEEETTTTEE-EEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCEE
T ss_pred CeEEEEECCCCCEE-EEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCEE
Confidence 56899999999965 55543 33456666544432211 115566 56899999998 67899
Q ss_pred EEEECCCEEEEEEeeCCccccee-----EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQ-----LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~-----~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
|+|+.||+|+|||+..++..... ..+..|.++|.+++|+++++.+..++++.++.+++|++.+++++..+.+|..
T Consensus 81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 160 (325)
T d1pgua1 81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160 (325)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence 99999999999999876654322 2345688899999999999953333445678899999999999999999999
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee---cCCCCcEEEEEEcCC-CCEEEEEecCCCCceEEEEEec
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
.|.+++|++..+ ..+++++.|+.+++||....+..... ..+...|.+++|+|+ +.++++++. ++.|++||+
T Consensus 161 ~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd~ 235 (325)
T d1pgua1 161 RINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDG 235 (325)
T ss_dssp CEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEET
T ss_pred cccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeeee
Confidence 999999976532 46788999999999998876655543 345667999999997 577888876 566999999
Q ss_pred CCceeeEEEecccccccceEEEEEc---CCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC-CCEEE
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GTLLA 638 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~ 638 (1091)
.+++.+..+.+|. ..+..+.|+ |++++|++++.|+.|+|||+++++++..+..+.....+..+++.+. +.+|+
T Consensus 236 ~~~~~~~~l~~~~---~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (325)
T d1pgua1 236 KSGEFLKYIEDDQ---EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312 (325)
T ss_dssp TTCCEEEECCBTT---BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred ccccccccccccc---cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEE
Confidence 9999999998877 444433333 6889999999999999999999999999887766444555555543 35789
Q ss_pred EEECCCeEEEEEC
Q 001367 639 VIANENRIKILET 651 (1091)
Q Consensus 639 ~~~~dg~i~iwd~ 651 (1091)
+++.||.|++||+
T Consensus 313 s~s~dg~i~vwdl 325 (325)
T d1pgua1 313 SLSLDGTLNFYEL 325 (325)
T ss_dssp EEETTSCEEEEET
T ss_pred EEECCCEEEEEEC
Confidence 9999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.9e-29 Score=271.24 Aligned_cols=287 Identities=13% Similarity=0.148 Sum_probs=218.8
Q ss_pred ccEEEEEEecCCCeEEEeecCc-eEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCC-CCCeeEEEecC
Q 001367 734 NKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS-QEAVPCFALSK 811 (1091)
Q Consensus 734 ~~i~~~~~s~dg~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~s~ 811 (1091)
..+.+++|+|+|+.++.++.+. .++.|+...... ..... +. +| ...|++++|+|
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~--------------------~~~~~--~~--gh~~~~v~~v~fsP 73 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV--------------------PPVVQ--FT--GHGSSVVTTVKFSP 73 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS--------------------CSEEE--EC--TTTTSCEEEEEECS
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc--------------------cceEE--Ee--CCCCCCEEEEEEee
Confidence 3456789999999888776553 345554322110 00111 11 24 56899999998
Q ss_pred --CCCEEEEEe-CCeEEEEEccCceeE--------EEecCCCCCeEEEEEcCCCCcEEEEEeC--CCeEEEEeccCccee
Q 001367 812 --NDAYLFSAS-GGVISLYIVMTFKTI--------LTIMPPSPTATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVI 878 (1091)
Q Consensus 812 --dg~~la~~~-dg~i~iwd~~~~~~~--------~~~~~~~~~i~~l~~s~~~~~~la~g~~--dg~i~iwd~~~~~~~ 878 (1091)
+|++|++++ ||+|+|||+..++.. ..+..+...|.+++|++ ++++|++++. ++.+.+|+..+++.+
T Consensus 74 ~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (325)
T d1pgua1 74 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSL 152 (325)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEE
T ss_pred CCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccc
Confidence 678999998 899999998754432 23456888999999999 8888877654 678999999999999
Q ss_pred eeeccccCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCC-CCEEEE-Eec
Q 001367 879 SKLEGHSKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHE 955 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~~-las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d-g~~la~-~~d 955 (1091)
..+.+|...|++++|+|++.+ +++++.|+.|++||+...+... ......++.. .|.+++|+|| +.+|++ +.|
T Consensus 153 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~~---~v~~v~~~pd~~~~l~s~~~d 227 (325)
T d1pgua1 153 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQGS---FVRDVEFSPDSGEFVITVGSD 227 (325)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTTC---CEEEEEECSTTCCEEEEEETT
T ss_pred eeeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCCC---ccEEeeeccccceeccccccc
Confidence 999999999999999999875 7789999999999998755332 3333344443 7999999997 677887 578
Q ss_pred CeEEEEEcCCcceeeeeecCCccCEEEEEEe---eCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccce
Q 001367 956 THLAIYEAEELTCLKQWFPISSVPISQATFS---CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1032 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs---~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1032 (1091)
+.|++||+.+++.+..+ .+|...+..+.|+ +||++|++++.|++|+|||+.+++.+..+.... +...+..
T Consensus 228 ~~i~iwd~~~~~~~~~l-~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~------~~~~~~~ 300 (325)
T d1pgua1 228 RKISCFDGKSGEFLKYI-EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK------QQLGNQQ 300 (325)
T ss_dssp CCEEEEETTTCCEEEEC-CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT------TCGGGCE
T ss_pred cceeeeeeccccccccc-cccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC------CcccCeE
Confidence 99999999999988874 4677777766666 789999999999999999999999887765221 1222344
Q ss_pred eEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 1033 HAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1033 ~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
+++.+.+ +..|++|+.||.|++||+
T Consensus 301 ~~~~~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 301 VGVVATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred EEEEECC--CCEEEEEECCCEEEEEEC
Confidence 5555554 468999999999999996
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=2.1e-27 Score=268.29 Aligned_cols=368 Identities=11% Similarity=0.043 Sum_probs=263.0
Q ss_pred eEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeC
Q 001367 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1091)
Q Consensus 348 ~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1091)
.++++.+.||+|.|||..+++++.. +..| ..+..++|||||++|++++.|++|.+||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence 4568999999999999999999875 4444 4699999999999999999999999999988
Q ss_pred Ccccc--eeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEE
Q 001367 428 GSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505 (1091)
Q Consensus 428 ~~~~~--~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 505 (1091)
++... .+....+|.+.+.+.+|+|||++ ++++++.++.|++||..+++++..+..|...+....+.+.
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~--------- 162 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE--------- 162 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC---------
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC---------
Confidence 76432 12222357777888889999995 4578889999999999999999998877766554444322
Q ss_pred ecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEE
Q 001367 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1091)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~ 585 (1091)
.....+.++|+|..++.... .++.|.+||..+++......... ...+..++
T Consensus 163 ------------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~--g~~~~~~~ 213 (432)
T d1qksa2 163 ------------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA--ERFLHDGG 213 (432)
T ss_dssp ------------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--CSSEEEEE
T ss_pred ------------------------CceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcc--cCccccce
Confidence 23345678899988776553 26679999988876554443222 35688999
Q ss_pred EcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCC---CCCCceEEEccCCCEEEEEE-CCCeEEEEECCCCCeeccc
Q 001367 586 FDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG---LPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA 660 (1091)
Q Consensus 586 ~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1091)
|+|+|+++++++ .++.+.++|..+++....+..... ........+...+...++.. .++.+.+|.......
T Consensus 214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~---- 289 (432)
T d1qksa2 214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH---- 289 (432)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----
T ss_pred ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc----
Confidence 999999888876 556899999999998887765422 11223333443444443332 256666665432210
Q ss_pred ccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEE
Q 001367 661 GVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 740 (1091)
Q Consensus 661 ~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 740 (1091)
..+...+....
T Consensus 290 ---------------------------------------------------------------------~~~~~~v~~~~ 300 (432)
T d1qksa2 290 ---------------------------------------------------------------------PDNAWKILDSF 300 (432)
T ss_dssp ---------------------------------------------------------------------TTTBTSEEEEE
T ss_pred ---------------------------------------------------------------------cccccEEEEEE
Confidence 01344566778
Q ss_pred EecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe
Q 001367 741 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 820 (1091)
Q Consensus 741 ~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 820 (1091)
+++++..+++++.+...++|...... .+......+++ ||++.+++++
T Consensus 301 ~~~~g~~~~~~s~p~~~~lw~~~~~~--------------------------------~~~~~~~sv~v-pDg~~la~~s 347 (432)
T d1qksa2 301 PALGGGSLFIKTHPNSQYLYVDATLN--------------------------------PEAEISGSVAV-FDIKAMTGDG 347 (432)
T ss_dssp ECSCSCCCCEECCTTCSEEEEECTTC--------------------------------SSHHHHTCEEE-EEGGGCCCSS
T ss_pred EcCCCCeEEEEecCCccceeecccCC--------------------------------CCCCeeeEEEE-Eechhhcccc
Confidence 88888878888888888887632110 12233345555 8999999888
Q ss_pred -CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe-----CCCeEEEEeccCcceeeeeccc
Q 001367 821 -GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-----DDSTILIYNARSSEVISKLEGH 884 (1091)
Q Consensus 821 -dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~-----~dg~i~iwd~~~~~~~~~l~~h 884 (1091)
|+.+++|++.++..+ ..|...+.+++||| ||++++++. .+|.|.|||..++++...+++.
T Consensus 348 ~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 348 SDPEFKTLPIAEWAGI---TEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp SCCCEEEECHHHHHTC---CSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cCCceEeccccccccc---CCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 788999998766433 34667889999999 787775553 4789999999999988877653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.3e-27 Score=252.75 Aligned_cols=269 Identities=11% Similarity=0.132 Sum_probs=212.2
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
+.+++|.||.++|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~ 54 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDN 54 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEEC
T ss_pred ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEEe
Confidence 56789999999999999997 699999999999998764 3359999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
++++ .+++++.|+++++|++...+ ....+..+++++++. .+++ +.++.+.+|+..+++.+..+..+
T Consensus 55 ~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 120 (287)
T d1pgua2 55 SKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVL-TNDDDLLILQSFTGDIIKSVRLN 120 (287)
T ss_dssp CSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEE-ETTSEEEEEETTTCCEEEEEECS
T ss_pred cCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEE-eecccceeeeccceeeeeecccc
Confidence 9765 57889999999999987532 233467888999887 4554 45667899999999988887643
Q ss_pred CcceEEEeecccCCceEEEEEecC-CeEEEEecCCCCceeeec-CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
.++.++.. ++..+++++.+ +.+++|++.......... .+...+.+++|+|++.+|++++. ++.|++||+
T Consensus 121 -~~~~~~~~----~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~ 191 (287)
T d1pgua2 121 -SPGSAVSL----SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDL 191 (287)
T ss_dssp -SCEEEEEE----CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred -ceeeeeec----cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----cccccceee
Confidence 34444433 33466666665 579999987666555443 45678999999999999999986 556999999
Q ss_pred CCceeeEE-EecccccccceEEEEEcCC----------CCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCCCCCCceEEE
Q 001367 563 SEGAIKRT-YQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 563 ~~~~~~~~-~~~~~~~~~~v~~v~~~~~----------~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
.+++.... +.+|. ..|.+++|+|. +.++++|+.|++|++||+++ ++.+..+..|. ..|.+++|
T Consensus 192 ~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~--~~V~~v~~ 266 (287)
T d1pgua2 192 QSREVKTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK--DGVNNLLW 266 (287)
T ss_dssp TTTEEEECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST--TCEEEEEE
T ss_pred cccccccccccccc---cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCC--CCeEEEEE
Confidence 99876543 45555 88999999875 46899999999999999977 55555555554 47999999
Q ss_pred ccCCCEEEEEECCCeEEEEEC
Q 001367 631 NKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
+|++ .+++++.|+.|++|++
T Consensus 267 ~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 267 ETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EETT-EEEEEETTSCEEEEEE
T ss_pred CCCC-EEEEEECCCeEEEEEE
Confidence 9986 5889999999999985
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.5e-26 Score=247.49 Aligned_cols=270 Identities=10% Similarity=0.084 Sum_probs=217.5
Q ss_pred CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccc
Q 001367 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 734 (1091)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 734 (1091)
++++.+.+|..+|++++| +| |++|+.||+|++|+..... ..|..
T Consensus 4 ~~i~~l~gH~~~I~~l~~---------------------s~----l~sgs~Dg~v~~Wd~~~~~-----------~~h~~ 47 (287)
T d1pgua2 4 EVLKTISGHNKGITALTV---------------------NP----LISGSYDGRIMEWSSSSMH-----------QDHSN 47 (287)
T ss_dssp EEEEEECCCSSCEEEEET---------------------TT----TEEEETTSCEEETTTTEEE-----------CCCCS
T ss_pred ceeEEECCCCCceEEEEE---------------------Cc----EEEEeCCCeEEEEECCCCC-----------CCCCC
Confidence 567788999999999998 43 8999999999999976422 24888
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.|.++++++++. +++++.|+++++|++.... ....+.++++++++.
T Consensus 48 ~V~~~~~~~~~~-~~s~s~D~~v~~w~~~~~~---------------------------------~~~~~~~~~~~~~~~ 93 (287)
T d1pgua2 48 LIVSLDNSKAQE-YSSISWDDTLKVNGITKHE---------------------------------FGSQPKVASANNDGF 93 (287)
T ss_dssp CEEEEECCSTTC-CEEEETTTEEEETTEEEEE---------------------------------CSSCEEEEEECSSSE
T ss_pred CEEEEEecCCCe-EEEEeeccccccccccccc---------------------------------cccceeeeeeccCCc
Confidence 999999987765 7899999999999854321 334577889999999
Q ss_pred EEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEeccCcceeeee-ccccCCeEEEE
Q 001367 815 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKL-EGHSKRVTGLV 892 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-~i~iwd~~~~~~~~~l-~~h~~~V~~l~ 892 (1091)
.++++.++.+.+|+..+++.+..+..+ ..+ .++++ ++..+++++.++ .+++|++.+.+....+ ..|.+.|++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~ 169 (287)
T d1pgua2 94 TAVLTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS 169 (287)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECS-SCE--EEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEE
T ss_pred eEEEeecccceeeeccceeeeeecccc-cee--eeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEE
Confidence 999988999999999999988887643 333 45666 566777777664 7999999876655544 35788999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC----------CEEEE-EecCeEEEE
Q 001367 893 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----------TRFLL-VHETHLAIY 961 (1091)
Q Consensus 893 ~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg----------~~la~-~~d~~i~vw 961 (1091)
|+|++++|++++.||.|++||+.++... .....+|.. .|.+++|+|++ .+|++ +.|++|++|
T Consensus 170 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~----~~~~~~h~~---~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw 242 (287)
T d1pgua2 170 ISPSETYIAAGDVMGKILLYDLQSREVK----TSRWAFRTS---KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 242 (287)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEE----ECCSCCCSS---CEEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred eccCccccccccccccccceeecccccc----ccccccccc---ccceeeecccccccccccCCCCeeEeecCCCeEEEE
Confidence 9999999999999999999999986532 233455554 79999998754 67887 578999999
Q ss_pred EcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 962 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 962 d~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
|+.++........+|...|++++|+|++ .|++++.||+|++|++
T Consensus 243 ~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 243 SVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred ECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 9988665555677899999999999987 5889999999999986
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.4e-27 Score=257.60 Aligned_cols=296 Identities=9% Similarity=0.018 Sum_probs=216.0
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
++++.+++|++.|++|+|||+|+ +||+|+.||+|+|||+.++...... ....+|..+|.+++|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~----------------~~~~~h~~~V~~v~f 64 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNF 64 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEE----------------EEecCCCCCEEEEEE
Confidence 45778899999999999999998 6799999999999999887654321 113369999999999
Q ss_pred CCC-CCEEEEEECCCEEEEEEeeCCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE---
Q 001367 405 SPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--- 479 (1091)
Q Consensus 405 spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--- 479 (1091)
+|+ +.+|++|+.|+.|++|++..+.... ....+. .......+.+++. .+++++.|+.+++||+.++....
T Consensus 65 ~~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~ 139 (342)
T d1yfqa_ 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp EESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred eCCCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc--cccccccccccceeeccccccceeee
Confidence 986 5689999999999999998876544 233333 3344555566666 79999999999999987554332
Q ss_pred -EecCCCcc--eEEEeecccCCceEEEEEecCCeEEEEecCCCCcee---eecCCCCcEEEEEEc-CCCCEEEEEecCCC
Q 001367 480 -SFEGHGAP--VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYS-ANGRRLFSCGTSKE 552 (1091)
Q Consensus 480 -~~~~~~~~--v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s-~d~~~l~~~~~~~~ 552 (1091)
....+... .....+ ..++..+++++.|+.|++||+....... ........+.+..+. .++..+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--- 214 (342)
T d1yfqa_ 140 KNLNSNNTKVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI--- 214 (342)
T ss_dssp EESCSSSSSSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET---
T ss_pred cccccccccceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC---
Confidence 22233222 222333 3355689999999999999998766443 223334445555554 46677777765
Q ss_pred CceEEEEEecCCceee------EE------EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001367 553 GESFLVEWNESEGAIK------RT------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~------~~------~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1091)
++.+.+|+....... .. ...+..+...+.+++|+|++++|++|+.||.|++||+++++.+..+..+.
T Consensus 215 -dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~ 293 (342)
T d1yfqa_ 215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred -CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 566888876543211 11 11122234678999999999999999999999999999999988876432
Q ss_pred CCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 621 GLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
.+..++|+|+++++++++.|+.+++|..
T Consensus 294 ---~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 294 ---EDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ---SSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred ---CCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 3567899999999999999988877754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.5e-25 Score=239.90 Aligned_cols=274 Identities=20% Similarity=0.299 Sum_probs=219.7
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
++...+|...|+|++| ||+ +||+|+.||+|+|||+.+++++.. +.+|...|++++|
T Consensus 8 i~~~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~-- 63 (293)
T d1p22a2 8 IHCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY-- 63 (293)
T ss_dssp EECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--
T ss_pred EeccCCCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--
Confidence 3456788899999765 787 679999999999999999988865 7899999999887
Q ss_pred CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce---eEEecC
Q 001367 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEG 483 (1091)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~ 483 (1091)
++++|++|+.|+.|++|++..+.... ....+.. ....+.+... .++++..++.+.+||..+... ...+..
T Consensus 64 ~~~~l~s~s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (293)
T d1p22a2 64 DERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVG 136 (293)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred ccceeecccccccccccccccccccc---ccccccc--cccccccccc--ceeecccccceeEeeccccccccccccccc
Confidence 67899999999999999999886443 2222322 2334445555 688999999999999887654 345577
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
|...+..+.+.. ..+++++.|+.|++||.++.+....+..+...+..+.++ +..+++++. ++.|++||+.
T Consensus 137 ~~~~v~~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~ 206 (293)
T d1p22a2 137 HRAAVNVVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIE 206 (293)
T ss_dssp CSSCEEEEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETT
T ss_pred cccccccceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecc
Confidence 888888777632 478899999999999999999888888888888777664 568888876 5679999999
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CeeEEEEeCCCCCCCCceEEEccCC
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------VQLLTTIDAGGGLPENPRICFNKNG 634 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1091)
+...+..+.++. ..+.. +.+++.++++++.||.|++||+.+ ...+..+..|.. .|.+++|+ +
T Consensus 207 ~~~~~~~~~~~~---~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~--~V~~v~~d--~ 277 (293)
T d1p22a2 207 CGACLRVLEGHE---ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQFD--E 277 (293)
T ss_dssp TCCEEEEECCCS---SCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEEC--S
T ss_pred cceeeeeecccc---eeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC--CEEEEEEc--C
Confidence 999998888776 56654 566788999999999999999643 345667766654 68899885 6
Q ss_pred CEEEEEECCCeEEEEE
Q 001367 635 TLLAVIANENRIKILE 650 (1091)
Q Consensus 635 ~~l~~~~~dg~i~iwd 650 (1091)
++|++++.||+|++||
T Consensus 278 ~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 278 FQIVSSSHDDTILIWD 293 (293)
T ss_dssp SCEEECCSSSEEEEEC
T ss_pred CEEEEEecCCEEEEeC
Confidence 7899999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.3e-26 Score=255.98 Aligned_cols=294 Identities=12% Similarity=0.075 Sum_probs=212.1
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEE----
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV---- 402 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l---- 402 (1091)
....++|.+.|+++++++ + +++||+.|++|+|||..+.+....... ......|...+..+
T Consensus 7 ~~~~~~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 70 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDK-------------SYSHFVHKSGLHHVDVLQ 70 (393)
T ss_dssp EEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGG-------------EEEEECCTTCEEEEEEEE
T ss_pred eecCCcccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCcccce-------------eEeeeeccCCceEeeeEe
Confidence 456789999999999976 3 568999999999999877654321000 00022244333222
Q ss_pred --EECC-CCCEEEEEECCCEEEEEEeeCCcccceeEEE-------eccccCeeEEEEcCCCC---ceEEEEeeCCCcEEE
Q 001367 403 --VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEI-------DAHVGNVNDLAFSAPCK---QISVITCGDDKTIKV 469 (1091)
Q Consensus 403 --~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~-------~~h~~~v~~~~~s~d~~---~~~l~s~~~d~~i~i 469 (1091)
..+. ++.++++++.||.|++|++..+......... ..+...+..++|.+++. ..++++++.||.+++
T Consensus 71 ~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v 150 (393)
T d1sq9a_ 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 150 (393)
T ss_dssp EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred eeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence 2222 3467889999999999999876543322111 12455678888887642 127899999999999
Q ss_pred EeCCCCce------------------eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee------e
Q 001367 470 WDAVTGSR------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------Y 525 (1091)
Q Consensus 470 wd~~~~~~------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~ 525 (1091)
||+..... ......+...+.+++|++ ++ +|++|+.||.|++||+.+.+.... +
T Consensus 151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l 227 (393)
T d1sq9a_ 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227 (393)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeeccccccccccccccc
Confidence 99753210 111233556688888854 54 899999999999999998776553 3
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecc----------cccccceEEEEEcCCCCEEEE
Q 001367 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----------QLQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 526 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----------~~~~~~v~~v~~~~~~~~l~~ 595 (1091)
..|..+|.+++|+|||++|++++.++. .+.|++||+.+++.+..+... ..|...|.+++|+|++++|++
T Consensus 228 ~~h~~~V~~l~~spdg~~l~sgs~D~t-~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S 306 (393)
T d1sq9a_ 228 INNSNSIRSVKFSPQGSLLAIAHDSNS-FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306 (393)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEEETT-EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred ccccceEEEcccccccceeeeecCCCC-cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE
Confidence 457789999999999999999986432 467999999999888877521 123488999999999999999
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCCCC--CCceEEEccCCCEEEEE
Q 001367 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLP--ENPRICFNKNGTLLAVI 640 (1091)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~~~ 640 (1091)
++.|++|++||+++++++.++..|.... ....++|+|++..++++
T Consensus 307 ~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred ECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence 9999999999999999999998775421 12358899999877644
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.5e-25 Score=251.54 Aligned_cols=271 Identities=11% Similarity=0.103 Sum_probs=201.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcc---cceeEEEeccccCeeEEEE------cCCCCceEEEEe
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAF------SAPCKQISVITC 461 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~------s~d~~~~~l~s~ 461 (1091)
..++|...|.++++++ ++|++++.|++|+|||..+.+. .........|...+..+.. +.... .+++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 85 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATT 85 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEE
Confidence 3678999999999875 6999999999999999876543 1122223344444333222 22111 267899
Q ss_pred eCCCcEEEEeCCCCceeEEe----------cCCCcceEEEeecccC---CceEEEEEecCCeEEEEecCCCCce------
Q 001367 462 GDDKTIKVWDAVTGSRTYSF----------EGHGAPVYSLCPHAKE---NIHFIFSISVDGKIKAWLYDSLGAR------ 522 (1091)
Q Consensus 462 ~~d~~i~iwd~~~~~~~~~~----------~~~~~~v~~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~------ 522 (1091)
+.||.|++|++........+ ..+...+..+++.+.. .+.++++++.||.+++|++......
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 99999999997654332111 1244556677765543 2578999999999999998532210
Q ss_pred ------------eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc---ccccceEEEEEc
Q 001367 523 ------------VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFD 587 (1091)
Q Consensus 523 ------------~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~v~~~ 587 (1091)
.....+...+.+++|+|++ ++++++. ++.|++||+.+++.+..+.... .|...|.+++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccceEEEcccc
Confidence 0112234457899999998 7778765 7789999999998877665422 244899999999
Q ss_pred CCCCEEEEEeCCC---eEEEEECCCCeeEEEEeCC-----------CCCCCCceEEEccCCCEEEEEECCCeEEEEECCC
Q 001367 588 TAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAG-----------GGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 588 ~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
|++++|++|+.|+ .|++||+++++.+..+... ++...|.+++|+|++++|++++.|++|++||+.+
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence 9999999999886 4999999999988877521 2345799999999999999999999999999999
Q ss_pred CCeeccccccccccee
Q 001367 654 SNSVDAAGVLSDNLRK 669 (1091)
Q Consensus 654 ~~~~~~~~~~~~~v~~ 669 (1091)
++.+..+.+|.+.|..
T Consensus 321 g~~~~~l~gH~~~v~~ 336 (393)
T d1sq9a_ 321 KERITTLNMHCDDIEI 336 (393)
T ss_dssp TEEEEEEECCGGGCSS
T ss_pred CCEEEEECCcCCcccC
Confidence 9999999999988853
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=1e-25 Score=255.58 Aligned_cols=367 Identities=9% Similarity=0.006 Sum_probs=245.1
Q ss_pred EEEEEcCCCce-EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC
Q 001367 338 MSMDFHPVQHT-LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1091)
Q Consensus 338 ~~v~fspdg~~-llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 416 (1091)
....++.|.+. ++++.+.||+|+|||+.+++.+.. +..| ..+..++|||||++|++++.
T Consensus 22 ~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~ 81 (426)
T d1hzua2 22 KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGR 81 (426)
T ss_dssp SSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEET
T ss_pred CcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeC
Confidence 33456666543 457788899999999999998875 4445 46999999999999999999
Q ss_pred CCEEEEEEeeCCcccce--eEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 417 KHIVQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~--~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
|++|++||+.+++.... +....+|.+.+.+++|+|||++ +++++..++.+++||..++.++..+..|...+....+.
T Consensus 82 d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 160 (426)
T d1hzua2 82 DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH 160 (426)
T ss_dssp TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeec
Confidence 99999999999874321 1122367777888999999995 45666789999999999999999998888777766664
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE-EEec
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQG 573 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~ 573 (1091)
+.+. ...+ .+++++..++.... +.+.+.+++...+.... ....
T Consensus 161 ~~~~-~~~i--------------------------------~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~ 204 (426)
T d1hzua2 161 PEPR-VAAI--------------------------------IASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIG 204 (426)
T ss_dssp SCCC-EEEE--------------------------------EECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEE
T ss_pred CCCc-eeEE--------------------------------EECCCCCEEEEecC---CCCeEEEEEeccccceeeEEec
Confidence 4322 1223 34444444443332 13335555544443222 2222
Q ss_pred ccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCE-EE--EEECCCeEEEE
Q 001367 574 LQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LA--VIANENRIKIL 649 (1091)
Q Consensus 574 ~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~--~~~~dg~i~iw 649 (1091)
+. ..+..+.|+|++++++++. .+..+.+++..+++.+................+..++.. +. ....++.+.+|
T Consensus 205 ~~---~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~ 281 (426)
T d1hzua2 205 AA---PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLI 281 (426)
T ss_dssp CC---SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEE
T ss_pred cC---CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEe
Confidence 23 6788999999999988865 567799999999999888776544333333333332221 11 11123444444
Q ss_pred ECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCC
Q 001367 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 729 (1091)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~ 729 (1091)
+.... .+.+|
T Consensus 282 ~~~~~-----------------------------------------------------~~~~~----------------- 291 (426)
T d1hzua2 282 GTDPK-----------------------------------------------------NHPQY----------------- 291 (426)
T ss_dssp ECCTT-----------------------------------------------------TCTTT-----------------
T ss_pred ecccc-----------------------------------------------------ccccc-----------------
Confidence 32211 00011
Q ss_pred ccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEe
Q 001367 730 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 809 (1091)
Q Consensus 730 ~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 809 (1091)
.+...... . +|...+..++|
T Consensus 292 --------------------------------------------------------~~~~~~~l--~--g~~~~v~~v~~ 311 (426)
T d1hzua2 292 --------------------------------------------------------AWKKVAEL--Q--GQGGGSLFIKT 311 (426)
T ss_dssp --------------------------------------------------------BTSEEEEE--E--CSSSCCCCEEC
T ss_pred --------------------------------------------------------cceEeEEE--e--cCCCceeEEEc
Confidence 01101111 1 36677888888
Q ss_pred cCCCCEEEEE-------e-CCeEEEEEccCceeEEEe---------cCCCCCeEEEEEcCCCCcEEE-EE----eCCCeE
Q 001367 810 SKNDAYLFSA-------S-GGVISLYIVMTFKTILTI---------MPPSPTATSLAFNPHDNNVIA-IG----MDDSTI 867 (1091)
Q Consensus 810 s~dg~~la~~-------~-dg~i~iwd~~~~~~~~~~---------~~~~~~i~~l~~s~~~~~~la-~g----~~dg~i 867 (1091)
+||+++|++. + +++|+|||+.+++...++ ..+...+.+++||| ||++++ ++ +.+|.|
T Consensus 312 sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i 390 (426)
T d1hzua2 312 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSAL 390 (426)
T ss_dssp CTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEE
T ss_pred CCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeE
Confidence 8888888853 2 578999999998776554 24566799999999 777664 32 468899
Q ss_pred EEEeccCcceeeeeccccCCeEEEEECCCCCEEE
Q 001367 868 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 901 (1091)
Q Consensus 868 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~la 901 (1091)
+|||..+++....+.++. .++|+|++-+
T Consensus 391 ~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 391 VVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp EEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred EEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence 999999999988888774 4467887743
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=4.5e-26 Score=250.09 Aligned_cols=297 Identities=9% Similarity=-0.018 Sum_probs=220.6
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
+..+|+..|++|+|+|++++||+|+.||+|+|||+.++..........+|..+|.+++|+|++.. +|++|+.|+.|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence 36789999999999999999999999999999999987655544455579999999999997654 79999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee----cC--CCCcEEEEEEcCCCCEE
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----DA--PGLGCTRMAYSANGRRL 544 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~--~~~~i~~~~~s~d~~~l 544 (1091)
++..+........+...+....+.. .+...+++++.++.+++||++........ .. .......+.+.+++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred ecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 9999888877766665554444332 34468999999999999998754433221 11 12234566778888899
Q ss_pred EEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeeE------EEEe
Q 001367 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLL------TTID 617 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~------~~~~ 617 (1091)
++++. ++.|++||+..................+.+..+. .++..+++++.||.+.+|+....... ....
T Consensus 164 ~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~ 239 (342)
T d1yfqa_ 164 IVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp EEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred eeecC----CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence 98876 6679999998776544433322223455555554 45678899999999999997653211 1111
Q ss_pred -------CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccC
Q 001367 618 -------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSN 690 (1091)
Q Consensus 618 -------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~ 690 (1091)
...+...+.+++|+|++++|++|+.||.|++||+.+++.+..+..+ .....+++
T Consensus 240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~------------------ 300 (342)
T d1yfqa_ 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKI------------------ 300 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEE------------------
T ss_pred eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEE------------------
Confidence 1122335789999999999999999999999999999888766533 23334555
Q ss_pred CCCCCCCCccccccccccccccccc
Q 001367 691 EDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 691 ~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+++++.+++++.|+++++|...
T Consensus 301 ---s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 301 ---ACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---EECSSEEEEEEECTHHHHCSSS
T ss_pred ---EeCCCEEEEEEcCCcEEEeeee
Confidence 6678888889899999888753
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-24 Score=232.96 Aligned_cols=271 Identities=17% Similarity=0.247 Sum_probs=218.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
..+|...|+|++ +||++||+|+.||+|+|||+.+++.++ ++.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 557888999876 479999999999999999999987655 78899999999987 566 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee---eecCCCCcEEEEEEcCCCCEEEEEe
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCG 548 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~d~~~l~~~~ 548 (1091)
+..+........+......... ....++++..++.+.+|+........ ....+...+..+.+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence 9999888777666555544332 33579999999999999998766433 4556666777666654 5566666
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceE
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1091)
. ++.+++||..+++.+..+.++. ..+..+.++ +.++++++.||.|++||+.+.+.+.....+.. ...
T Consensus 156 ~----d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~ 222 (293)
T d1p22a2 156 G----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE----LVR 222 (293)
T ss_dssp T----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEE
T ss_pred C----CCceeeecCCCCcEEEEEcccc---cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce----eee
Confidence 4 6779999999999999998877 677777765 57899999999999999999999888876543 234
Q ss_pred EEccCCCEEEEEECCCeEEEEECCCC---------CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCc
Q 001367 629 CFNKNGTLLAVIANENRIKILETPES---------NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKP 699 (1091)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~ 699 (1091)
.+++++.+|++++.||.|++||+... ..+..+.+|...|+++++ +++.
T Consensus 223 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~-----------------------d~~~ 279 (293)
T d1p22a2 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-----------------------DEFQ 279 (293)
T ss_dssp EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-----------------------CSSC
T ss_pred eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE-----------------------cCCE
Confidence 56778899999999999999997532 345667788888888766 3567
Q ss_pred cccccccccccccc
Q 001367 700 EISVEAENKSEVEK 713 (1091)
Q Consensus 700 l~s~~~d~~i~~w~ 713 (1091)
+++++.|++|++||
T Consensus 280 l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 280 IVSSSHDDTILIWD 293 (293)
T ss_dssp EEECCSSSEEEEEC
T ss_pred EEEEecCCEEEEeC
Confidence 99999999999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=1.6e-26 Score=256.46 Aligned_cols=316 Identities=14% Similarity=0.086 Sum_probs=218.8
Q ss_pred EEEEEcC-CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC
Q 001367 338 MSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1091)
Q Consensus 338 ~~v~fsp-dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 416 (1091)
..-.||| ||++ +|+++. |.|.+||+.++..+. + +|...|.+++|||||++|++++.
T Consensus 6 ~~~~fSP~dG~~-~a~~~~-g~v~v~d~~~~~~~~--------------------~-~~~~~v~~~~~spDg~~l~~~~~ 62 (360)
T d1k32a3 6 FAEDFSPLDGDL-IAFVSR-GQAFIQDVSGTYVLK--------------------V-PEPLRIRYVRRGGDTKVAFIHGT 62 (360)
T ss_dssp GEEEEEECGGGC-EEEEET-TEEEEECTTSSBEEE--------------------C-SCCSCEEEEEECSSSEEEEEEEE
T ss_pred hcccccCCCCCE-EEEEEC-CeEEEEECCCCcEEE--------------------c-cCCCCEEEEEECCCCCEEEEEEc
Confidence 3467999 9994 566654 899999998887653 2 58999999999999999998775
Q ss_pred CC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 417 KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 417 d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
+. .|++||+.+++.. .+..|...|.+++|+|||+ +|++++.++.+++|++.+++....+..|...+.+++|+
T Consensus 63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 136 (360)
T d1k32a3 63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 136 (360)
T ss_dssp TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred CCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence 53 7999999987543 4678999999999999999 89999999999999999999999999999999999995
Q ss_pred ccCCceEEEEEe----------cCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 495 AKENIHFIFSIS----------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 495 ~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
++|++|+.+. .++.+++|++.+.+.. ....+...+..++|+|||++|++++. ++.+.+|+...
T Consensus 137 --pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~ 209 (360)
T d1k32a3 137 --DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVV 209 (360)
T ss_dssp --TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSS
T ss_pred --cceeeeeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCCCCEEEEEeC----CCceEcccccc
Confidence 4677887653 3456999999876543 44456667889999999999999875 45588898765
Q ss_pred ceee-------EEEecccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 565 GAIK-------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 565 ~~~~-------~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
.... .....+. ..+..+.|++++..+.++..+. .+..++...+
T Consensus 210 ~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 264 (360)
T d1k32a3 210 LNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG---------------------- 264 (360)
T ss_dssp SCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB----------------------
T ss_pred cceeeccccceEEEeccc---CccccceECCCcCcccccceeecccccceeecccCcC----------------------
Confidence 4332 1112221 2333344555555444332221 1111111111
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
........++.+..+.... . ++.+.++++++.++.+++|
T Consensus 265 --~~~~~~~~~~~~~~~~~~~------------------~---------------------~~~~~~~~~~~~~~~i~~~ 303 (360)
T d1k32a3 265 --DYRMIIPLESSILIYSVPV------------------H---------------------GEFAAYYQGAPEKGVLLKY 303 (360)
T ss_dssp --CEEEEEECSSEEEEEECCC------------------C---------------------CSHHHHHHCCCCCEEEEEE
T ss_pred --ceeEeeecCCCceEEEEEe------------------c---------------------CCCeeEEEecCCCCEEEEE
Confidence 1111111112222111100 0 3334455666677777777
Q ss_pred cccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCc
Q 001367 713 KPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 765 (1091)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~ 765 (1091)
++...+. ..+.+.|.+++|+|||++|++++.||.+++|++..+
T Consensus 304 d~~~~~~----------~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 304 DVKTRKV----------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346 (360)
T ss_dssp ETTTCCE----------EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred ECCCCeE----------EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence 7653221 114567899999999999999999999999997654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=4.9e-25 Score=248.74 Aligned_cols=352 Identities=9% Similarity=0.048 Sum_probs=259.4
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeE--EEEeCC-CCCCCCceEEE
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAG-GGLPENPRICF 630 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~-~~~~~v~~v~~ 630 (1091)
++.|.+||..+++.+..+..+. .+..++|+|||+++++++.|+++++||+.+++.. ..+... .+...+.+..|
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g~----~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~ 116 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME 116 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence 6779999999999999998754 6899999999999999999999999999887643 333322 11122445567
Q ss_pred ccCCCEE-EEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccc
Q 001367 631 NKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKS 709 (1091)
Q Consensus 631 s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i 709 (1091)
+|||++| ++++.++.+++||..+++.+..+..+...+....+.
T Consensus 117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~------------------------------------ 160 (432)
T d1qksa2 117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH------------------------------------ 160 (432)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE------------------------------------
T ss_pred CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc------------------------------------
Confidence 8899986 677789999999999998887776555443322221
Q ss_pred ccccccccCCcccceeecCCccccccEEEEEEecCCCeEEE-eecCceEEEeecCCcccccccceeeccCCccccCCCCC
Q 001367 710 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA-LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 788 (1091)
Q Consensus 710 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1091)
+......+.++++|..++. ...++.+.+|+......
T Consensus 161 ----------------------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~--------------------- 197 (432)
T d1qksa2 161 ----------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN--------------------- 197 (432)
T ss_dssp ----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE---------------------
T ss_pred ----------------------CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc---------------------
Confidence 2345667889999987654 45568999888643211
Q ss_pred ceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecC-----CCCCeEEEEEcCCCCcEEEEE
Q 001367 789 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIG 861 (1091)
Q Consensus 789 ~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~la~g 861 (1091)
.....+ .+...+..++|+|||+++++++ ++.+.++|..+++....+.. +........+.. .+...++.
T Consensus 198 -~~~~~i---~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~~ 272 (432)
T d1qksa2 198 -LKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWATS 272 (432)
T ss_dssp -EEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEEE
T ss_pred -ceEEEE---cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceeccc
Confidence 111111 1345678999999999998887 57899999999988876542 333445555555 56555554
Q ss_pred e-CCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceE
Q 001367 862 M-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 940 (1091)
Q Consensus 862 ~-~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 940 (1091)
. .++.|.+|+..... +..|...|....++|++..+++++.+.+.++|+..+.. .+.. ...+
T Consensus 273 ~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-----------~~~~---~~~s 334 (432)
T d1qksa2 273 HMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-----------PEAE---ISGS 334 (432)
T ss_dssp BSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-----------SSHH---HHTC
T ss_pred ccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-----------CCCC---eeeE
Confidence 3 47899999866543 35677889999999999999999999999999876522 1111 2334
Q ss_pred EEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEE-----cCCcEEEEeCCCCceEEE
Q 001367 941 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQCR 1014 (1091)
Q Consensus 941 l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~-----~dg~v~iwd~~~~~~~~~ 1014 (1091)
+++ ||++.|++ +.|+.+++|++.++..+ ..|...|.+++|||||++++++. .+|.|.|||..++++...
T Consensus 335 v~v-pDg~~la~~s~d~~~k~w~~~~~~~l----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~ 409 (432)
T d1qksa2 335 VAV-FDIKAMTGDGSDPEFKTLPIAEWAGI----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV 409 (432)
T ss_dssp EEE-EEGGGCCCSSSCCCEEEECHHHHHTC----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred EEE-EechhhcccccCCceEeccccccccc----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeE
Confidence 555 99999998 57889999998766433 34677899999999999886654 468899999999999876
Q ss_pred ee
Q 001367 1015 IL 1016 (1091)
Q Consensus 1015 ~~ 1016 (1091)
+.
T Consensus 410 i~ 411 (432)
T d1qksa2 410 IK 411 (432)
T ss_dssp EC
T ss_pred ec
Confidence 65
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=1.4e-24 Score=246.23 Aligned_cols=361 Identities=8% Similarity=0.056 Sum_probs=245.0
Q ss_pred EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE
Q 001367 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1091)
++.|.+.++..... .++.|++||+.+++.+..+..+. .+..++|+|||+++++++.|++|++||+.+++.....
T Consensus 26 ~~~d~~~~~~V~~~--~dg~v~vwD~~t~~~~~~l~~g~----~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~ 99 (426)
T d1hzua2 26 NDLDLPNLFSVTLR--DAGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 99 (426)
T ss_dssp SCCCGGGEEEEEET--TTTEEEEEETTTCSEEEEEECCS----SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred ccCCCCeEEEEEEc--CCCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE
Confidence 55554433322222 37789999999999999998765 5899999999999999999999999999998765433
Q ss_pred --eCC-CCCCCCceEEEccCCCEEEEE-ECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCC
Q 001367 617 --DAG-GGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNED 692 (1091)
Q Consensus 617 --~~~-~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~ 692 (1091)
... ++...+.+++|+|||++++++ ..++.+.+||..++........+...+...++.
T Consensus 100 ~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~------------------- 160 (426)
T d1hzua2 100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH------------------- 160 (426)
T ss_dssp EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE-------------------
T ss_pred EEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeec-------------------
Confidence 221 111224566778899987555 478999999999998887777665555433332
Q ss_pred CCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC-ceEEEeecCCccccccc
Q 001367 693 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLST 771 (1091)
Q Consensus 693 ~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~vw~~~~~~~~~~~ 771 (1091)
+......+++++++..++....+ +.+.+++.....
T Consensus 161 ---------------------------------------~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~----- 196 (426)
T d1hzua2 161 ---------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID----- 196 (426)
T ss_dssp ---------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS-----
T ss_pred ---------------------------------------CCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc-----
Confidence 22334556777777766655543 455554432211
Q ss_pred ceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecCCC--CCeEE
Q 001367 772 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPS--PTATS 847 (1091)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~--~~i~~ 847 (1091)
.+..... ++...+..++++|++++++++. ++.+.+++..+++......... .....
T Consensus 197 -----------------~~~~~~~---~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (426)
T d1hzua2 197 -----------------NLTVTSI---GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG 256 (426)
T ss_dssp -----------------SCEEEEE---ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCC
T ss_pred -----------------ceeeEEe---ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccce
Confidence 0111111 2567788999999999999887 5789999999999887765322 22233
Q ss_pred EEEcCCCCcEE--EEEeCCCeEEEEeccC-------cceeeeeccccCCeEEEEECCCCCEEEE-------EeCCCcEEE
Q 001367 848 LAFNPHDNNVI--AIGMDDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVS-------SGGDAQIFV 911 (1091)
Q Consensus 848 l~~s~~~~~~l--a~g~~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~las-------~s~Dg~i~v 911 (1091)
..+.......+ +..+.|+.+.+|+... ++....+.+|...+..++|+||+++|++ ++.|++|+|
T Consensus 257 ~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~v 336 (426)
T d1hzua2 257 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 336 (426)
T ss_dssp EEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEE
T ss_pred eeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEE
Confidence 33333122222 2344678888887654 3677889999999999999999999994 556889999
Q ss_pred EEcCCCceeeee-eeeccCCCcCCCCCceEEEEcCCCCEEEEE------ecCeEEEEEcCCcceeeeeecCCccCEEEEE
Q 001367 912 WDVDGWGIQTCR-SLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFPISSVPISQAT 984 (1091)
Q Consensus 912 wd~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~fs~dg~~la~~------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~ 984 (1091)
||+.+++..... ......++......+.+++|||||++++++ .++.|+|||.++++....+ .++. .
T Consensus 337 wd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i-~~~~------~ 409 (426)
T d1hzua2 337 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV-KDPR------L 409 (426)
T ss_dssp EETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE-CCTT------C
T ss_pred EECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEE-CCCC------c
Confidence 999987643221 111111222222468899999999987542 3678999999999977663 3332 4
Q ss_pred EeeCCCEEE
Q 001367 985 FSCDCRMVF 993 (1091)
Q Consensus 985 fs~dg~~l~ 993 (1091)
++|+|+|-+
T Consensus 410 ~tp~Gk~~~ 418 (426)
T d1hzua2 410 ITPTGKFNV 418 (426)
T ss_dssp CSEEEEEEH
T ss_pred cCCCceEeE
Confidence 468887743
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=9.2e-25 Score=242.09 Aligned_cols=332 Identities=9% Similarity=0.001 Sum_probs=228.4
Q ss_pred EEEEcC-CCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCC--eEEEEecCCCCce
Q 001367 446 DLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGAR 522 (1091)
Q Consensus 446 ~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~ 522 (1091)
.-.||| ||+ ++++++ +|.|++||+.++..++ + +|...|.+++|+ +||+.|++++.+. .|++||.+++..
T Consensus 7 ~~~fSP~dG~--~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~s--pDg~~l~~~~~~~g~~v~v~d~~~~~~- 78 (360)
T d1k32a3 7 AEDFSPLDGD--LIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRG--GDTKVAFIHGTREGDFLGIYDYRTGKA- 78 (360)
T ss_dssp EEEEEECGGG--CEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEEC--SSSEEEEEEEETTEEEEEEEETTTCCE-
T ss_pred cccccCCCCC--EEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEEC--CCCCEEEEEEcCCCCEEEEEECCCCcE-
Confidence 457999 999 677766 6799999998887665 3 699999999995 5778888776554 799999987554
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-----
Q 001367 523 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----- 597 (1091)
Q Consensus 523 ~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s----- 597 (1091)
..+..+...+.+++|+|||++|++++. ++.+++|+..+++....+..+. ..+.+++|+|+|++|+.++
T Consensus 79 ~~~~~~~~~v~~~~~spdg~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~la~~~~~~~~ 151 (360)
T d1k32a3 79 EKFEENLGNVFAMGVDRNGKFAVVAND----RFEIMTVDLETGKPTVIERSRE---AMITDFTISDNSRFIAYGFPLKHG 151 (360)
T ss_dssp EECCCCCCSEEEEEECTTSSEEEEEET----TSEEEEEETTTCCEEEEEECSS---SCCCCEEECTTSCEEEEEEEECSS
T ss_pred EEeeCCCceEEeeeecccccccceecc----ccccccccccccceeeeeeccc---ccccchhhccceeeeeeecccccc
Confidence 456678889999999999999999986 6679999999999988888777 7888999999999998653
Q ss_pred -----CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeee
Q 001367 598 -----DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 598 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
.++.+++|+..+++........ ..+..++|+|||++|++++.++.+.+|+......... ....+..+.+
T Consensus 152 ~~~~~~~~~~~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~---~~~~~~~~~~ 225 (360)
T d1k32a3 152 ETDGYVMQAIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE---VVSKPFVIPL 225 (360)
T ss_dssp TTCSCCEEEEEEEETTTTEEEECSCSS---SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC---SCBEEEEEES
T ss_pred ceeeccccceeeeccccCceeeecccc---cccccccccCCCCEEEEEeCCCceEcccccccceeec---cccceEEEec
Confidence 4557999999998776554332 2467899999999999999999999999765432211 1111222222
Q ss_pred ccccccccccccCCcccCCCCCCCCCcccccccccc---cccccccccCCcccceeecCCccccccEEEEEEecC---CC
Q 001367 673 NPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENK---SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG---GQ 746 (1091)
Q Consensus 673 ~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~---i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d---g~ 746 (1091)
.+. .......++++..++++..+.. .++|.+..... ....+. .+.+.+..+.+... +.
T Consensus 226 ~~~-----------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~ 289 (360)
T d1k32a3 226 IPG-----------SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG-DYRMII----PLESSILIYSVPVHGEFAA 289 (360)
T ss_dssp STT-----------CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB-CEEEEE----ECSSEEEEEECCCCCSHHH
T ss_pred ccC-----------ccccceECCCcCcccccceeecccccceeecccCcC-ceeEee----ecCCCceEEEEEecCCCee
Confidence 111 1111122555555554433222 23333321111 111111 12223333333333 33
Q ss_pred eEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEE
Q 001367 747 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVIS 825 (1091)
Q Consensus 747 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~ 825 (1091)
++++++.++.+++||+... + .. .+...|.+++|||||++|++++ ||.|+
T Consensus 290 ~~~~~~~~~~i~~~d~~~~----------------------~-~~-------~~~~~v~~~~~SpDG~~l~~~~~Dg~i~ 339 (360)
T d1k32a3 290 YYQGAPEKGVLLKYDVKTR----------------------K-VT-------EVKNNLTDLRLSADRKTVMVRKDDGKIY 339 (360)
T ss_dssp HHHCCCCCEEEEEEETTTC----------------------C-EE-------EEEEEEEEEEECTTSCEEEEEETTSCEE
T ss_pred EEEecCCCCEEEEEECCCC----------------------e-EE-------EecCCcCEEEECCCCCEEEEEECCCeEE
Confidence 4556666778888876432 1 11 1445689999999999999998 79999
Q ss_pred EEEccCceeEEEecCCCCC
Q 001367 826 LYIVMTFKTILTIMPPSPT 844 (1091)
Q Consensus 826 iwd~~~~~~~~~~~~~~~~ 844 (1091)
+||+++++...++..+..+
T Consensus 340 v~d~~~~~~~~~~~~d~~~ 358 (360)
T d1k32a3 340 TFPLEKPEDERTVETDKRP 358 (360)
T ss_dssp EEESSCTTSCEECCCCSSC
T ss_pred EEECCCCCcceEEEecccc
Confidence 9999999888877655444
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=1.3e-20 Score=202.38 Aligned_cols=275 Identities=12% Similarity=0.096 Sum_probs=216.6
Q ss_pred eEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE-EEECCCEEEEEEee
Q 001367 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-VAYSKHIVQLYAYH 426 (1091)
Q Consensus 348 ~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-s~~~d~~i~iwd~~ 426 (1091)
++.++++.|++|.|||+.+++.+.+. . ....+..++|+|||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i-------------------~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATI-------------------P-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-------------------E-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEE-------------------E-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 55678889999999999999877642 1 235678999999999885 55678999999999
Q ss_pred CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceE-EEEE
Q 001367 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF-IFSI 505 (1091)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~ 505 (1091)
+++.+. .+..|. .+..++|++++.. +++++..++.+.+|+..+++....+..+. ....+++++ ++.. ++++
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--dg~~~~~~~ 134 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSP--DGKKLYVTN 134 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT--TSSEEEEEE
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeeccccc-cceEEEeec--CCCeeeeee
Confidence 987654 455554 4688999999985 56677788899999999999888887554 556677754 4444 4666
Q ss_pred ecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEE
Q 001367 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1091)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~ 585 (1091)
..++.+.+|+..+......+.... ....+.++|++..++++..+ ...+.+|+....+......... .+..++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 206 (301)
T d1l0qa2 135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVEA----APSGIA 206 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSS----EEEEEE
T ss_pred ccccceeeeeccccceeeecccCC-CceEEEeeccccceeeeccc---ccccccccccceeeeecccccC----Ccceee
Confidence 778899999998887777665543 56788999999999887652 4568888888887777666543 577899
Q ss_pred EcCCCCEEEEEe---CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE-EEECCCeEEEEECCCCCeecccc
Q 001367 586 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 586 ~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
++++++.+++++ .++.|++||..+++.+..+..+. .+..++|+|||++|+ +++.++.|++||+.+++.+..+.
T Consensus 207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 999999887754 34689999999999998887653 368999999999874 66678999999999998776654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=1e-20 Score=206.77 Aligned_cols=293 Identities=12% Similarity=0.072 Sum_probs=203.7
Q ss_pred CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE-EEECCCeEEEEECCCCCeeccccccccccee
Q 001367 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1091)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1091)
+++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.+++.+..+..+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~-- 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-- 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--
Confidence 578999999999999999999999998765545678999999999875 55678999999999887766554321110
Q ss_pred eeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE
Q 001367 670 LSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 670 ~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
+...+..++|+|+++.++
T Consensus 80 --------------------------------------------------------------~~~~~~~v~~s~dg~~l~ 97 (337)
T d1pbyb_ 80 --------------------------------------------------------------RVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp --------------------------------------------------------------EEECTTCEEECTTSSEEE
T ss_pred --------------------------------------------------------------cccceeeEEEcCCCcEEE
Confidence 112233578888888887
Q ss_pred EeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEc
Q 001367 750 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIV 829 (1091)
Q Consensus 750 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~ 829 (1091)
++..+.....|.. ...+..+.+||.
T Consensus 98 ~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~d~ 122 (337)
T d1pbyb_ 98 IYESPVRLELTHF-------------------------------------------------------EVQPTRVALYDA 122 (337)
T ss_dssp EEEEEEEECSSCE-------------------------------------------------------EECCCEEEEEET
T ss_pred EeecCCcceeeec-------------------------------------------------------cccccceeeccc
Confidence 7776544433221 112456667777
Q ss_pred cCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCC------------
Q 001367 830 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL------------ 897 (1091)
Q Consensus 830 ~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg------------ 897 (1091)
.+++....+.. ...+..++|+| +++++++++.+ +.+||..+++....+..+.. .....++|++
T Consensus 123 ~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
T d1pbyb_ 123 ETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGV 197 (337)
T ss_dssp TTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESSS--EEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTE
T ss_pred cCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcCC--cceeeeecCcEEEEeecCCc-cccceecCCcceeeccccccce
Confidence 77777666653 34566777777 67777766544 56677777666555543221 1111122221
Q ss_pred ------------CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCC
Q 001367 898 ------------NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 965 (1091)
Q Consensus 898 ------------~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~ 965 (1091)
......+.++.+.+|++.++......... +. ..+..++++|++.+++.. ++.+++||+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~ 269 (337)
T d1pbyb_ 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI----MD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEK 269 (337)
T ss_dssp EEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECTTSSEEEEE-ESEEEEEETTT
T ss_pred eeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC----CC---cceEEEEecccceEEEEc-cccEEEEECCC
Confidence 11222233456889999887643322211 11 247788999999988754 68999999999
Q ss_pred cceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 966 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 966 ~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
++.+.... +...+.+++|+|||++|++++.||+|++||+.+++.+.++..
T Consensus 270 ~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 270 NASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CcEEEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 99988764 456788999999999999999999999999999999988763
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=9.4e-20 Score=195.43 Aligned_cols=269 Identities=14% Similarity=0.155 Sum_probs=201.7
Q ss_pred EEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE-EEECCCeEEEEECCCCCeecccccccccceeeee
Q 001367 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
++++.+++|.+||+++++.+..+..... ...++|+|||++|+ +++.++.|++||+.+++.+..+..
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~---p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~---------- 72 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVGSN---PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---------- 72 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSS---EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC----------
T ss_pred EEECCCCEEEEEECCCCeEEEEEECCCC---ceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec----------
Confidence 3467899999999999999999986543 57899999999875 555788999999876643322110
Q ss_pred ccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEee
Q 001367 673 NPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 752 (1091)
Q Consensus 673 ~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 752 (1091)
T Consensus 73 -------------------------------------------------------------------------------- 72 (301)
T d1l0qa2 73 -------------------------------------------------------------------------------- 72 (301)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEcc
Q 001367 753 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM 830 (1091)
Q Consensus 753 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~ 830 (1091)
...+..+++++++..++++. ++.+.+|+..
T Consensus 73 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (301)
T d1l0qa2 73 ------------------------------------------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (301)
T ss_dssp ------------------------------------------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ------------------------------------------------cccccccccccccccccccccccceeeecccc
Confidence 11234556666666655554 4678889988
Q ss_pred CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCC-CcE
Q 001367 831 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQI 909 (1091)
Q Consensus 831 ~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D-g~i 909 (1091)
+++....+. +.....+++|+|++..+++++..++.+.+|+..+++.+..+..+ ..+..++++|+++.+++++.+ +.+
T Consensus 105 ~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (301)
T d1l0qa2 105 SNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSI 182 (301)
T ss_dssp TTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred cceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccccccc
Confidence 888888776 44567889999944444556677889999999999888887755 458899999999998887765 567
Q ss_pred EEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e---cCeEEEEEcCCcceeeeeecCCccCEEEEEE
Q 001367 910 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H---ETHLAIYEAEELTCLKQWFPISSVPISQATF 985 (1091)
Q Consensus 910 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~f 985 (1091)
.+|+....+... ...... .+..++|++++..++++ . ++.|++||..+++.+..+.. ...+..++|
T Consensus 183 ~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~va~ 251 (301)
T d1l0qa2 183 SVIDTVTNSVID-----TVKVEA----APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGIAV 251 (301)
T ss_dssp EEEETTTTEEEE-----EEECSS----EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEE
T ss_pred ccccccceeeee-----cccccC----CcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC--CCCEEEEEE
Confidence 777777654222 111111 36789999999998763 2 35799999999998877543 456899999
Q ss_pred eeCCCEE-EEEEcCCcEEEEeCCCCceEEEee
Q 001367 986 SCDCRMV-FTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 986 s~dg~~l-~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
||||++| ++++.|++|++||+.+++.+..+.
T Consensus 252 spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 252 TPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 9999987 567779999999999999887765
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=8.4e-21 Score=207.45 Aligned_cols=309 Identities=9% Similarity=0.037 Sum_probs=203.1
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
+|+++++.|++|+|||+++++.++.+ .+..+...+.+++|+|||+. ++++++.++.|.+||+.+++.+..+..+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 58999999999999999998766532 22344556889999999994 34677889999999999999988876554322
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC--------CCceEEEEE
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------EGESFLVEW 560 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~--------~~~~~i~iw 560 (1091)
... .+..++|+|++++++++.... ..+..+.+|
T Consensus 80 ~~~---------------------------------------~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (337)
T d1pbyb_ 80 RVK---------------------------------------SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp EEE---------------------------------------CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred ccc---------------------------------------ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeec
Confidence 111 011234555555544443210 124568899
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1091)
|..+++....+.... .+..++|+|+++++++++. .+.+||..+++....+..+.. .....+++++..+...
T Consensus 121 d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 191 (337)
T d1pbyb_ 121 DAETLSRRKAFEAPR----QITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW---EAETYAQPDVLAVWNQ 191 (337)
T ss_dssp ETTTTEEEEEEECCS----SCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTT---TTTTBCCCBCCCCCCC
T ss_pred cccCCeEEEeccccC----CceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCc---cccceecCCcceeecc
Confidence 999999888887644 6778999999999999865 467899999998888776543 2333444544322211
Q ss_pred EC-CCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCC
Q 001367 641 AN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARP 719 (1091)
Q Consensus 641 ~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~ 719 (1091)
.. .+....+... . ..+.........+
T Consensus 192 ~~~~~~~~~~~~~-------------------~---------------------~~~~~~~~~~~~~------------- 218 (337)
T d1pbyb_ 192 HESSGVMATPFYT-------------------A---------------------RKDIDPADPTAYR------------- 218 (337)
T ss_dssp CTTTTEEEEEEEE-------------------E---------------------BTTSCTTSGGGEE-------------
T ss_pred ccccceeeeeeee-------------------e---------------------eeccceeeecccC-------------
Confidence 11 1111111100 0 0111111122222
Q ss_pred cccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCC
Q 001367 720 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 799 (1091)
Q Consensus 720 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1091)
+.+.+|++.. +...... .. .
T Consensus 219 -----------------------------------~~~~~~~~~~----------------------~~~~~~~-~~--~ 238 (337)
T d1pbyb_ 219 -----------------------------------TGLLTMDLET----------------------GEMAMRE-VR--I 238 (337)
T ss_dssp -----------------------------------EEEEEEETTT----------------------CCEEEEE-EE--E
T ss_pred -----------------------------------ccEEEEEcCC----------------------CcEEEEE-ec--C
Confidence 2233333221 1101000 00 1
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceee
Q 001367 800 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 879 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~ 879 (1091)
+...+..++++|++.+++++ ++.+++||+.+++.+..+. +...+.+++|+| ||++|++++.|++|++||..+++.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~ 315 (337)
T d1pbyb_ 239 MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred CCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 45567788899999988765 5899999999999998886 556789999999 89999999999999999999999888
Q ss_pred eecc
Q 001367 880 KLEG 883 (1091)
Q Consensus 880 ~l~~ 883 (1091)
++.-
T Consensus 316 ~i~~ 319 (337)
T d1pbyb_ 316 QVDL 319 (337)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7753
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=2e-21 Score=213.43 Aligned_cols=327 Identities=9% Similarity=-0.019 Sum_probs=217.0
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE-ECCCeEEEEECCCCCeeccccc
Q 001367 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 584 v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
++|+++++++++++.+++|.+||+.+++.+.++..+.. ..+..++|+|||++++++ ..++.|++||+.+++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 46889999999999999999999999999998876433 246799999999987555 5689999999998876654432
Q ss_pred ccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEe
Q 001367 663 LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 742 (1091)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 742 (1091)
...... ....+..++|+
T Consensus 81 ~~~~~~---------------------------------------------------------------~~~~~~~v~~s 97 (346)
T d1jmxb_ 81 SSVPGE---------------------------------------------------------------VGRSMYSFAIS 97 (346)
T ss_dssp CCSTTE---------------------------------------------------------------EEECSSCEEEC
T ss_pred cccccc---------------------------------------------------------------cCCceEEEEEe
Confidence 111100 11123346777
Q ss_pred cCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCC
Q 001367 743 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 822 (1091)
Q Consensus 743 ~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg 822 (1091)
|||++++++..+.....|.... ....+.+|+..++......... .....+..+.+++++..++. ++
T Consensus 98 ~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~ 163 (346)
T d1jmxb_ 98 PDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVA--GP 163 (346)
T ss_dssp TTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEE--SS
T ss_pred cCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEe--CC
Confidence 7777766655432221111100 0011122222222211111110 12344566777888876654 46
Q ss_pred eEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEE-EEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEE
Q 001367 823 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 901 (1091)
Q Consensus 823 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l-a~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~la 901 (1091)
.+.+|++.+++.+..+..+ .....++++| ++..+ +.+..++.+.+++.. ..+.+....++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 224 (346)
T d1jmxb_ 164 DIYKMDVKTGKYTVALPLR-NWNRKGYSAP-DVLYFWPHQSPRHEFSMLYTI-----------------ARFKDDKQDPA 224 (346)
T ss_dssp SEEEECTTTCCEEEEECST-TCCCTTBCCC-BCCCCCCCCCTTCEEEEEEEE-----------------EEC-------C
T ss_pred cceEEEccCCCEEEEEecC-CCccceEEec-cccEEEEEecCCCceEeeeee-----------------eeeccCceeEe
Confidence 6899999999998888644 3456677888 44444 444455566555432 22334445566
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEE
Q 001367 902 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPIS 981 (1091)
Q Consensus 902 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 981 (1091)
++..++.+.+||+.++....... ..+. ..+..+.+++++.+++...++.+.+||..+++.+..... ...+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~ 295 (346)
T d1jmxb_ 225 TADLLYGYLSVDLKTGKTHTQEF----ADLT---ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL--DHTYY 295 (346)
T ss_dssp CCEEEEEEEEEETTTCCEEEEEE----EECS---SCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC--SSCCC
T ss_pred eccCCceEEEEECCCCceEEEEe----eccc---ceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC--CCCEE
Confidence 77778889999999876433211 1122 157789999999999988888999999999998887654 44688
Q ss_pred EEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 982 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 982 ~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
+++|||||++|++++.||.|++||+.+++.+..+.
T Consensus 296 ~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 296 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp EEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 99999999999999999999999999999998876
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=1.2e-20 Score=207.05 Aligned_cols=323 Identities=10% Similarity=0.002 Sum_probs=212.6
Q ss_pred EEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
++|+++++||++++.+++|.+||+.+++.++ ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence 4789999999999999999999999987655 444 45667889999999995 456777899999999999998877
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC--------C
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------E 552 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~--------~ 552 (1091)
+........... .+..++|+|||+++++..... .
T Consensus 78 ~~~~~~~~~~~~--------------------------------------~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~ 119 (346)
T d1jmxb_ 78 ANLSSVPGEVGR--------------------------------------SMYSFAISPDGKEVYATVNPTQRLNDHYVV 119 (346)
T ss_dssp EESCCSTTEEEE--------------------------------------CSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred ecccccccccCC--------------------------------------ceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence 653322111000 111245556655555443210 1
Q ss_pred CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
.+..+.+|+..+++....+..+. ....+..+.+++++..+++ ++.+.+|+..+++.+..+..+.. ...+.++|
T Consensus 120 ~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 192 (346)
T d1jmxb_ 120 KPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW---NRKGYSAP 192 (346)
T ss_dssp CCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC---CCTTBCCC
T ss_pred CcceEEEEecccceeeeEEEeee-ccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCC---ccceEEec
Confidence 24568888888877655544332 1234555667777665544 24688999999998888876543 45566777
Q ss_pred CCCEEEEEEC-CCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccc
Q 001367 633 NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEV 711 (1091)
Q Consensus 633 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~ 711 (1091)
++..++.... ++.+.+++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 213 (346)
T d1jmxb_ 193 DVLYFWPHQSPRHEFSMLYTI----------------------------------------------------------- 213 (346)
T ss_dssp BCCCCCCCCCTTCEEEEEEEE-----------------------------------------------------------
T ss_pred cccEEEEEecCCCceEeeeee-----------------------------------------------------------
Confidence 6655443322 3333333211
Q ss_pred ccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCcee
Q 001367 712 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 791 (1091)
Q Consensus 712 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1091)
..+.+....+.+...++.+.+|++... ....
T Consensus 214 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 244 (346)
T d1jmxb_ 214 ---------------------------ARFKDDKQDPATADLLYGYLSVDLKTG----------------------KTHT 244 (346)
T ss_dssp ---------------------------EEC-------CCCEEEEEEEEEETTTC----------------------CEEE
T ss_pred ---------------------------eeeccCceeEeeccCCceEEEEECCCC----------------------ceEE
Confidence 001111111222223344444443321 1111
Q ss_pred eecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 001367 792 VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 871 (1091)
Q Consensus 792 ~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd 871 (1091)
.... .+...+..+.+++++.+++...++.|.+||..+++.+..+. +...+.+++|+| ||++|++++.||.|++||
T Consensus 245 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D 319 (346)
T d1jmxb_ 245 QEFA---DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFN 319 (346)
T ss_dssp EEEE---ECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEE
T ss_pred EEee---cccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEE
Confidence 1100 25667788899999999998888999999999999998886 445789999999 899999999999999999
Q ss_pred ccCcceeeeeccccC
Q 001367 872 ARSSEVISKLEGHSK 886 (1091)
Q Consensus 872 ~~~~~~~~~l~~h~~ 886 (1091)
+.+++.+.++..+.+
T Consensus 320 ~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 320 PDTLEKVKNIKLPGG 334 (346)
T ss_dssp TTTTEEEEEEECSSS
T ss_pred CccCCEEEEEECCCC
Confidence 999999988875443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.83 E-value=9.2e-18 Score=186.03 Aligned_cols=333 Identities=11% Similarity=0.027 Sum_probs=221.0
Q ss_pred cCCCccEEEEEECCCCCEEEEEE-----CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEe------
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC------ 461 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~------ 461 (1091)
..+..++.+++++|||+.+++.. ..+.|.+||..+++.+. ++..+..+ .++|+|||+ +++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFSR 89 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCC--EEEEEeecCCc
Confidence 35788999999999999998752 34579999999987665 45555433 799999999 45544
Q ss_pred ----eCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEE
Q 001367 462 ----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1091)
Q Consensus 462 ----~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1091)
..++.|.+||..+++.+..+..+......+...+ ..+.|
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~ 132 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNAN 132 (373)
T ss_pred ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEEE
Confidence 3467899999999998888766655444332211 13577
Q ss_pred cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeEEEE
Q 001367 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTI 616 (1091)
Q Consensus 538 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~ 616 (1091)
+++++.++....+ ....+.+|+....+..... ....++.++|+++.+ ++.+.|+.+.+|+...+......
T Consensus 133 s~dg~~~~v~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~ 203 (373)
T d2madh_ 133 TPNNADLLFFQFA--AGPAVGLVVQGGSSDDQLL-------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL 203 (373)
T ss_pred EeCCCcEEEEEEc--CCCceEEeeccCCeEEEEe-------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEE
Confidence 8888877666542 2456888888777654433 345678899998766 56889999999999988877665
Q ss_pred eCCC----CCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCC
Q 001367 617 DAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNED 692 (1091)
Q Consensus 617 ~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~ 692 (1091)
.... .......+.+++++. ++..+.++.+.+|+............
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~------------------------------ 252 (373)
T d2madh_ 204 VGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPI------------------------------ 252 (373)
T ss_pred eeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEee------------------------------
Confidence 4321 111223455566554 44556778899998776532211100
Q ss_pred CCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccc
Q 001367 693 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 772 (1091)
Q Consensus 693 ~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 772 (1091)
+. .........+.|.+...++.+.++...
T Consensus 253 --------------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~-------------- 281 (373)
T d2madh_ 253 --------------------DA-----------------LSGGRKADTWRPGGWQQVAYLKSSDGI-------------- 281 (373)
T ss_pred --------------------cc-----------------ccCcEEeeeeccCcceeeEEecCCCeE--------------
Confidence 00 011111222223222222222222111
Q ss_pred eeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEc
Q 001367 773 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN 851 (1091)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 851 (1091)
..+..++..++... ++.+.+||..+++.+..+. +...+..++|+
T Consensus 282 ----------------------------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~s 326 (373)
T d2madh_ 282 ----------------------------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVA 326 (373)
T ss_pred ----------------------------------EEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEEC
Confidence 11122333344443 6889999999999998876 56678999999
Q ss_pred CCCCc--EEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCC
Q 001367 852 PHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 896 (1091)
Q Consensus 852 ~~~~~--~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd 896 (1091)
| ||+ ++++++.|+.|++||+.+++.+..+.++....+.|++.++
T Consensus 327 p-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 327 Q-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred C-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 9 776 4578899999999999999999999988888888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.82 E-value=1.6e-17 Score=184.03 Aligned_cols=306 Identities=12% Similarity=0.022 Sum_probs=213.7
Q ss_pred ccCCCCcEEEEEcCCCceEEEEE----cCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg----~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
..+..++..++++|||++++++. +..+.|.+||..+++.+.+ +..+.. ..++|||
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~Sp 75 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAH 75 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcC
Confidence 46777999999999999776553 2346799999999998865 333433 3699999
Q ss_pred CCCEEEEEE----------CCCEEEEEEeeCCcccceeEEEeccccC-------eeEEEEcCCCCceEEEEeeCCCcEEE
Q 001367 407 DGSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHVGN-------VNDLAFSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 407 dg~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~~~-------v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1091)
||++|++++ .++.|.+||..+++... .+..+... ...+.|++|++.+++.....++.+.+
T Consensus 76 DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~ 152 (373)
T d2madh_ 76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGL 152 (373)
T ss_pred CCCEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEE
Confidence 999999875 35789999999987654 33333332 25688999999755666667788999
Q ss_pred EeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC------CCcEEEEEEcCCCCE
Q 001367 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGRR 543 (1091)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~d~~~ 543 (1091)
|+..+++...... ...++.+++... ..+++.+.|+.+.+|+............. ......+.+++++.+
T Consensus 153 ~~~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T d2madh_ 153 VVQGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI 227 (373)
T ss_pred eeccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE
Confidence 9988877655443 345666655432 46678899999999998877665543221 122345566666666
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEe--ccc-------ccccceEEEEEcCCCCEEE----------EEeCCCeEEE
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQ--GLQ-------LQHNSVSVVHFDTAKDQIL----------AAGDDHVIKI 604 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~-------~~~~~v~~v~~~~~~~~l~----------~~s~dg~i~i 604 (1091)
++... ++.+.+|+..++....... ... ........+++++++..++ ....++.+.+
T Consensus 228 ~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~ 302 (373)
T d2madh_ 228 VWPVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred EEecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence 55432 4558888877665332211 111 0012234456666665544 4456778999
Q ss_pred EECCCCeeEEEEeCCCCCCCCceEEEccCCCE--EEEEECCCeEEEEECCCCCeecccccccccceeeeec
Q 001367 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN 673 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 673 (1091)
||..+++.+..+.... .+..++|+|||+. +++++.|+.|++||+.+++.+..+..+......+++.
T Consensus 303 ~d~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~ 370 (373)
T d2madh_ 303 VTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM 370 (373)
T ss_pred EECCCCcEEEEecCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence 9999999998886543 4789999999984 4678889999999999999999998777766666653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=1.6e-17 Score=182.66 Aligned_cols=329 Identities=12% Similarity=0.043 Sum_probs=200.5
Q ss_pred EEEEECCCCCEEEEEE-----CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEE--------eeCCCc
Q 001367 400 NRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT--------CGDDKT 466 (1091)
Q Consensus 400 ~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s--------~~~d~~ 466 (1091)
.-.+.+|||+++++.. .+++|.+||..+++.+. ++..+ .+..++|||||+.+++++ ++.|+.
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~ 79 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDY 79 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCE
Confidence 3346789999998764 45679999999987655 34444 344799999999644332 345788
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 546 (1091)
|++||+.+++.+..+..+......+. .....++|+|++++++.
T Consensus 80 v~v~D~~t~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~s~dg~~~~v 122 (355)
T d2bbkh_ 80 VEVFDPVTLLPTADIELPDAPRFLVG-------------------------------------TYPWMTSLTPDGKTLLF 122 (355)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBS-------------------------------------CCGGGEEECTTSSEEEE
T ss_pred EEEEECCCCCEEEEEecCCcceeecC-------------------------------------CCCceEEEecCCCeeEE
Confidence 99999999988777654433221110 01224678999998887
Q ss_pred EecCCCCceEEEEEecCCceeeEEEeccccc----ccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCC
Q 001367 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG 621 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1091)
.... .+..+.+|+..+++.+..+...... ......+.++++++.++... .++.+.+++...... ..
T Consensus 123 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------~~ 193 (355)
T d2bbkh_ 123 YQFS--PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------ED 193 (355)
T ss_dssp EECS--SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------TT
T ss_pred ecCC--CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------ee
Confidence 7543 3567899999999888777653300 01222344555555444322 233333443332221 11
Q ss_pred CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecc--cccccccceeeeeccccccccccccCCcccCCCCCCCCCc
Q 001367 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA--AGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKP 699 (1091)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~ 699 (1091)
...+....+.+++..++.++.++.+++|+...+..... ...+......+.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 246 (355)
T d2bbkh_ 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW--------------------------- 246 (355)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE---------------------------
T ss_pred cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeee---------------------------
Confidence 22355677888888999999999999999886532211 0000000000000
Q ss_pred ccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCC
Q 001367 700 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 779 (1091)
Q Consensus 700 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 779 (1091)
.......+++++++..++....++...+
T Consensus 247 --------------------------------~p~~~~~~~~~~d~~~~~~~~~~~~~~~-------------------- 274 (355)
T d2bbkh_ 247 --------------------------------RPGGWQQVAYHRALDRIYLLVDQRDEWR-------------------- 274 (355)
T ss_dssp --------------------------------EECSSSCEEEETTTTEEEEEEEECCTTC--------------------
T ss_pred --------------------------------eccceEEEEEeCCCCeEEEEeccCCcee--------------------
Confidence 0011122445555554443332210000
Q ss_pred ccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCc--E
Q 001367 780 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--V 857 (1091)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~ 857 (1091)
.....+.|.+||..+++.+.++. +...+.+++|+| ||+ +
T Consensus 275 -------------------------------------~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l 315 (355)
T d2bbkh_ 275 -------------------------------------HKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKPLL 315 (355)
T ss_dssp -------------------------------------TTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECC-SSSCEE
T ss_pred -------------------------------------ecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcC-CCCeEE
Confidence 00002468999999999888776 345688999999 665 4
Q ss_pred EEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCC
Q 001367 858 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 897 (1091)
Q Consensus 858 la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 897 (1091)
++++..|+.|++||+.+++.+.++.++......+.+.++|
T Consensus 316 ~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 316 YALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred EEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence 5677889999999999999999998776666666665543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=2.4e-17 Score=181.24 Aligned_cols=303 Identities=14% Similarity=0.093 Sum_probs=199.7
Q ss_pred CcEEEEEcCCCceEEEEE----cCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 336 SPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg----~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
++.-.+.+|||++++++. ..+++|.+||..+++.+.+ +..+. +..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g~--~~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGF--LPNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECS--SCEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECCC--CCceEEcCCCCEE
Confidence 445557799999775553 3456799999999988764 22233 3369999999999
Q ss_pred EEEE----------CCCEEEEEEeeCCcccceeEEEecc----ccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 412 GVAY----------SKHIVQLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 412 as~~----------~d~~i~iwd~~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
++.+ .++.|++||..+++..........+ ......++|+++++.++++..+.+..+.+||..+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 8753 4788999999998765533211111 1234578999999965555556778999999999998
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec------CCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------APGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+..+..+....... . .....+..+.||....+............ .+...+....+++++..++.+..
T Consensus 142 ~~~~~~~~~~~~~~----~-~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (355)
T d2bbkh_ 142 KRMLDVPDCYHIFP----T-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 214 (355)
T ss_dssp EEEEECCSEEEEEE----E-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred eeEEecCCcceEee----c-CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence 88876544322111 1 11234444555555555443333222111 12223455677888888887764
Q ss_pred CCceEEEEEecCCceeeE--EEecccc-------cccceEEEEEcCCCCEEEEEeCC----------CeEEEEECCCCee
Q 001367 552 EGESFLVEWNESEGAIKR--TYQGLQL-------QHNSVSVVHFDTAKDQILAAGDD----------HVIKIWDMNKVQL 612 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~--~~~~~~~-------~~~~v~~v~~~~~~~~l~~~s~d----------g~i~iwd~~~~~~ 612 (1091)
++.+++|+...++... ....+.. .......+++++++..++....+ ..|.+||..+++.
T Consensus 215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 5679999998775422 1221110 01223457899999988876533 4799999999999
Q ss_pred EEEEeCCCCCCCCceEEEccCCC--EEEEEECCCeEEEEECCCCCeecccccccccceeee
Q 001367 613 LTTIDAGGGLPENPRICFNKNGT--LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 671 (1091)
+..+.... .+.+++|+|||+ +++++..|+.|++||..+++.+..+..+...-..+.
T Consensus 293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~ 350 (355)
T d2bbkh_ 293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT 350 (355)
T ss_dssp EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEE
Confidence 88876543 368999999997 345667789999999999999888876544433333
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=4.6e-16 Score=168.94 Aligned_cols=294 Identities=12% Similarity=0.136 Sum_probs=193.7
Q ss_pred EEEEEecCCeEEEEecCCCCceee--ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccc
Q 001367 501 FIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578 (1091)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 578 (1091)
.+++++.|++|++|+++....... ...+...+..++|+|||++|++++. .++.|++|++........+..+....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeecccC
Confidence 457888999999999987655433 2356678899999999999977654 26679999988765444444433234
Q ss_pred cceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC-CCeEEEEECCCCCe
Q 001367 579 NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETPESNS 656 (1091)
Q Consensus 579 ~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~ 656 (1091)
..+..++|+|||+++++++ .++.+.+|+..................+.++.++|+++++++++. +..+.+|+......
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 162 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence 5677899999999999987 477899999887766655544333446788999999998888775 46788888765432
Q ss_pred ecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccE
Q 001367 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 736 (1091)
Q Consensus 657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i 736 (1091)
......... . .......
T Consensus 163 ~~~~~~~~~------------------------------------------------------------~---~~~g~~p 179 (333)
T d1ri6a_ 163 LVAQDPAEV------------------------------------------------------------T---TVEGAGP 179 (333)
T ss_dssp EEEEEEEEE------------------------------------------------------------E---CSTTCCE
T ss_pred ceeeeceee------------------------------------------------------------e---eecCCCc
Confidence 211110000 0 0022345
Q ss_pred EEEEEecCCCeEEEeec-CceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCE
Q 001367 737 SRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 815 (1091)
Q Consensus 737 ~~~~~s~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 815 (1091)
..++|++++..++.... .+...+|++............ +.... ...........+++++|+++
T Consensus 180 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~----------~~~~~~~~~~~~~~s~d~~~ 243 (333)
T d1ri6a_ 180 RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT------LDMMP----------ENFSDTRWAADIHITPDGRH 243 (333)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE------EECSC----------TTCCSCCCEEEEEECTTSSE
T ss_pred cEEEEeccceeEEeeccccCceEEEeecccccceeeeee------eeeee----------cCCCccccceeEEEecccCc
Confidence 67899999987766554 567777775433211100000 00000 00123456678899999998
Q ss_pred EEEEe--CCeEEEEEccCceeEEEe---cCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEec--cCcce
Q 001367 816 LFSAS--GGVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNA--RSSEV 877 (1091)
Q Consensus 816 la~~~--dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~~la~g~-~dg~i~iwd~--~~~~~ 877 (1091)
++... ++.+.+|++......... ......+..++|+| ||++|++++ .++.|.+|++ ++|++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 244 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC-CCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 88776 588999998755433222 22345678899999 788776654 5689999955 56654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=7.8e-16 Score=167.09 Aligned_cols=281 Identities=15% Similarity=0.150 Sum_probs=185.4
Q ss_pred eEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE-CCCEEEEEEee
Q 001367 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH 426 (1091)
Q Consensus 348 ~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~ 426 (1091)
.++++++.|++|+||++.+...+.... ...|.+.|..++|||||++|++++ .|+.|++|++.
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~-----------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~ 67 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQ-----------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEE-----------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEEE-----------------EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence 356888899999999997655432211 224778999999999999996665 58999999998
Q ss_pred CCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCCcEEEEeCCCCceeEE--ecCCCcceEEEeecccCCceEEE
Q 001367 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIF 503 (1091)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~ 503 (1091)
.+...........+...+..++|+|||+ +|++++ .++.|.+|+......... ...+...+.++.+++ ++.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~ 143 (333)
T d1ri6a_ 68 PDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLW 143 (333)
T ss_dssp TTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEE
T ss_pred CCCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeee--cceeee
Confidence 7654433222233455678899999999 555555 577899998776654433 345666677788854 556666
Q ss_pred EEe-cCCeEEEEecCCCCceee------ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC--Ccee--eEEEe
Q 001367 504 SIS-VDGKIKAWLYDSLGARVD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQ 572 (1091)
Q Consensus 504 s~~-~dg~i~iwd~~~~~~~~~------~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~ 572 (1091)
.++ .+..|.+|+......... ..........++|++++..++..... .+...+|+.. .... .....
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEESSCTTSCCEEEEEEE
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccc---cCceEEEeecccccceeeeeeee
Confidence 655 556799999876554332 22334456789999999998876543 2334555443 2221 11111
Q ss_pred c---ccccccceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeEEEEe-CCCCCCCCceEEEccCCCEEEEEEC-CCeE
Q 001367 573 G---LQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIAN-ENRI 646 (1091)
Q Consensus 573 ~---~~~~~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i 646 (1091)
. ..........+++++++++++.. ..++.+.+|++.......... .......+..++|+|||++|++++. ++.|
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v 300 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI 300 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence 1 11122456778899999988775 567899999887543322221 1111124678999999999887764 6889
Q ss_pred EEEECC
Q 001367 647 KILETP 652 (1091)
Q Consensus 647 ~iwd~~ 652 (1091)
.+|++.
T Consensus 301 ~v~~id 306 (333)
T d1ri6a_ 301 SVYEIV 306 (333)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999553
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=3.7e-14 Score=155.92 Aligned_cols=292 Identities=11% Similarity=0.005 Sum_probs=192.0
Q ss_pred cCCCCcEEEEEcCCCceE--EEEEcCCCc--EEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 332 EGSSSPMSMDFHPVQHTL--LLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~l--lasg~~dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
.+.+....++.++|++.. .+....+|+ |.+||..+++.+.. ..++... .++|+||
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spD 75 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHS 75 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTT
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCC
Confidence 344566677788888853 333444554 66779999987764 3334433 5899999
Q ss_pred CCEEEEEE----------CCCEEEEEEeeCCcccceeEEEeccc-------cCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 408 GSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV-------GNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 408 g~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
|++|++.+ .|+.|.+||..+++.... +..+. .....++|+|||++ ++++...++.+.+|
T Consensus 76 g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~ 151 (368)
T d1mdah_ 76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGL 151 (368)
T ss_dssp SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEE
T ss_pred CCEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEE
Confidence 99999865 367899999999876543 33222 12346899999995 33444568999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee------cCCCCcEEEEEEcCCCCEE
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------DAPGLGCTRMAYSANGRRL 544 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~i~~~~~s~d~~~l 544 (1091)
|+.+++.+..+..+...... +. ....++..+.||.+.+|++......... ..+...+....+.+++..+
T Consensus 152 d~~~~~~~~~~~~~~~~~~~----~~-~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (368)
T d1mdah_ 152 SVPGASDDQLTKSASCFHIH----PG-AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV 226 (368)
T ss_dssp EETTTEEEEEEECSSCCCCE----EE-ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred ECCCCcEeEEeeccCcceEc----cC-CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence 99999998888665543221 12 1236677788888888887765544322 2223344567778887766
Q ss_pred EEEecCCCCceEEEEEecCCceeeEEE--eccc-------ccccceEEEEEcCCCCEEEEEeCC---------CeEEEEE
Q 001367 545 FSCGTSKEGESFLVEWNESEGAIKRTY--QGLQ-------LQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWD 606 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~--~~~~-------~~~~~v~~v~~~~~~~~l~~~s~d---------g~i~iwd 606 (1091)
...+ +.+++++...+...... .... ........+++++++..++....+ ..|.+||
T Consensus 227 ~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D 300 (368)
T d1mdah_ 227 WAVA------SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp ECBS------SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred EecC------CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence 6542 22555555544332221 1110 001123457889998887765322 3599999
Q ss_pred CCCCeeEEEEeCCCCCCCCceEEEccCCC-E-EEEEECCCeEEEEECCCCCeeccccc
Q 001367 607 MNKVQLLTTIDAGGGLPENPRICFNKNGT-L-LAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
..+++.+..+.... .+..++|+|||+ + ++++..++.|++||..+++.+..+..
T Consensus 301 ~~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 301 ASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp SSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred CCCCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence 99999888776442 468899999997 3 45566789999999999988877764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.58 E-value=4.6e-13 Score=152.52 Aligned_cols=221 Identities=13% Similarity=0.088 Sum_probs=139.7
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC-
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS- 416 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~- 416 (1091)
..+.|.+|++ ++.. .|+.+.+||+.+++.... +....+..|...|.++.|||||++||.++.
T Consensus 20 ~~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~ 82 (470)
T d2bgra1 20 YSLRWISDHE-YLYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (470)
T ss_dssp CCCEECSSSE-EEEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEE
T ss_pred cCCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECC
Confidence 3477999998 5453 478899999999986532 122236677889999999999999998854
Q ss_pred --------CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC---
Q 001367 417 --------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--- 485 (1091)
Q Consensus 417 --------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--- 485 (1091)
++.+.|||+.+++.. .+..|...+..+.|||||+ .++.. .++.+.+|+..+++..+....+.
T Consensus 83 ~~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~ 155 (470)
T d2bgra1 83 VKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (470)
T ss_dssp EECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred cceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCc
Confidence 467899999998643 3668888999999999999 56654 47789999999887765443221
Q ss_pred ---------------cceEEEeecccCCceEEEEEecCCe-EEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 486 ---------------APVYSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 486 ---------------~~v~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
+....+.| ++||+.|+....|.. +..|.+...... .........+.+...+..
T Consensus 156 ~~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~------ 224 (470)
T d2bgra1 156 IYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV------ 224 (470)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC------
T ss_pred ccccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc------
Confidence 22233455 567888888876644 444433211100 001112222222222211
Q ss_pred CCCCceEEEEEecCCceeeEEEeccc--------ccccceEEEEEcCCCCEEEE
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQGLQ--------LQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~--------~~~~~v~~v~~~~~~~~l~~ 595 (1091)
.....+.+|++.++........+. .....+..+.|.+++..++.
T Consensus 225 --~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 276 (470)
T d2bgra1 225 --NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ 276 (470)
T ss_dssp --CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred --CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence 124457888887765433322111 11234667888888876554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.57 E-value=1.2e-13 Score=151.78 Aligned_cols=314 Identities=13% Similarity=-0.010 Sum_probs=192.7
Q ss_pred EEEEEEcCCCCEEEE-EecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe----------CCC
Q 001367 532 CTRMAYSANGRRLFS-CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDH 600 (1091)
Q Consensus 532 i~~~~~s~d~~~l~~-~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s----------~dg 600 (1091)
...++..++++.... ......+...+++||..+++.+....++. . ..++|+|||+++++.+ .|+
T Consensus 22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF---L--SLAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT---T--CEEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC---C--CcceECCCCCEEEEEcccCccccccccCC
Confidence 344456778876433 22344557789999999999998887755 2 3588999999998864 367
Q ss_pred eEEEEECCCCeeEEEEeCCCCC-----CCCceEEEccCCCEEEEEE-CCCeEEEEECCCCCeecccccccccceeeeecc
Q 001367 601 VIKIWDMNKVQLLTTIDAGGGL-----PENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1091)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 674 (1091)
.|.+||..+++.+..+..+... .....++|+|||++++++. .++.+.+||+.+++....+..+.... +.+
T Consensus 97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~ 172 (368)
T d1mdah_ 97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHP 172 (368)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEE
T ss_pred eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----Ecc
Confidence 8999999999999888654321 1235799999999998876 57999999999987777665443221 111
Q ss_pred ccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC
Q 001367 675 ISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 754 (1091)
Q Consensus 675 ~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d 754 (1091)
.+.... ...++|++.++....++....|... ......+...+....+.+++..+.. .+
T Consensus 173 ~~~~~~----------v~~~~Dg~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~--~~ 230 (368)
T d1mdah_ 173 GAAATH----------YLGSCPASLAASDLAAAPAAAGIVG----------AQCTGAQNCSSQAAQANYPGMLVWA--VA 230 (368)
T ss_dssp EETTEE----------ECCCCTTSCEEEECCSSCCCCEECC----------CCSCTTSCBCSCCEEETTTTEEEEC--BS
T ss_pred CCCceE----------EEEcCCCCEEEEEecCCceeeeeee----------cccccccccceeecccccCcEEEEe--cC
Confidence 111000 0114444444433333333322211 1111123334445666677654433 34
Q ss_pred ceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--C--------CeE
Q 001367 755 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--G--------GVI 824 (1091)
Q Consensus 755 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--d--------g~i 824 (1091)
+.+.++++..... .+++...+......... -.......+++++++..+++.. + ..|
T Consensus 231 ~~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~~--~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v 296 (368)
T d1mdah_ 231 SSILQGDIPAAGA------------TMKAAIDGNESGRKADN--FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp SCCEEEECCSSCC------------EEECCCCSSCTHHHHTT--EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred CCEEEEeecCCce------------EEEeecccccceeeeee--ecCCCceeEEEcCCCCEEEEEecCCCceeecCCceE
Confidence 5566665543321 12222111100000000 0112334688999998877653 1 359
Q ss_pred EEEEccCceeEEEecCCCCCeEEEEEcCCCCc--EEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEE
Q 001367 825 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 893 (1091)
Q Consensus 825 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~ 893 (1091)
.+||..+++.+.++. +...+..++|+| |++ +++++..|+.|++||..+++.+..+..... -..|++
T Consensus 297 ~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~ 364 (368)
T d1mdah_ 297 SSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV 364 (368)
T ss_dssp EEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred EEEECCCCcEeEEec-CCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence 999999999888776 345788999999 665 456777899999999999999988875433 344444
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.56 E-value=9.5e-14 Score=158.33 Aligned_cols=379 Identities=10% Similarity=0.021 Sum_probs=212.5
Q ss_pred EEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc--ccccceEEEEEcCCCCEEEEEeC---------CCeE
Q 001367 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGD---------DHVI 602 (1091)
Q Consensus 534 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~s~---------dg~i 602 (1091)
.+.|.++++++... ++.+.+||+.+++....+..+. .+...|.++.|+||+++|+.++. ++.+
T Consensus 21 ~~~W~~d~~~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~ 94 (470)
T d2bgra1 21 SLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (470)
T ss_dssp CCEECSSSEEEEES------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred CCEeCCCCEEEEEc------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence 46788999877642 3459999999998877666543 23357899999999999998753 5678
Q ss_pred EEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccccccc
Q 001367 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1091)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (1091)
.+||+.+++... +..+ ...+..+.|||||+.+|... ++.+++|+..++............+
T Consensus 95 ~l~d~~~~~~~~-l~~~--~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~--------------- 155 (470)
T d2bgra1 95 DIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI--------------- 155 (470)
T ss_dssp EEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT---------------
T ss_pred EEEECCCCcccc-cccC--CccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCc---------------
Confidence 999999987543 3333 23578999999999999865 5789999988876554332211111
Q ss_pred ccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCc-eEEEee
Q 001367 683 IANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMWR 761 (1091)
Q Consensus 683 ~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg-~i~vw~ 761 (1091)
...+..| |... ....+....+.|||||+.|+....|. .+..|.
T Consensus 156 -----------------~~~g~~d-----~~~~--------------~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 156 -----------------IYNGITD-----WVYE--------------EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp -----------------EEESBCC-----HHHH--------------HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred -----------------ccccccc-----eeee--------------eeecCCccccEECCCCCccceeEecCCcCceEE
Confidence 0111000 0000 00122334578999999998887653 244443
Q ss_pred cCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEe---
Q 001367 762 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--- 838 (1091)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~--- 838 (1091)
+..... .. ........+.+...+... .+..+.+|++.++......
T Consensus 200 ~~~~~~-----------------~~------------~~~~~~~~~~~~~~g~~~---~~~~~~v~~~~~~~~~~~~~~~ 247 (470)
T d2bgra1 200 YSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTNATSI 247 (470)
T ss_dssp EEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEEGGGCCSSSCCCEE
T ss_pred EEeecc-----------------CC------------CCCCeeeeeccccccccC---CcceEEEEECCCcceeeecccc
Confidence 321100 00 011111222222111110 1235788888766543221
Q ss_pred --------cCCCCCeEEEEEcCCCCcEEEEEe-CCC---eEEEE--eccCcceeeee-------------ccccCCeEEE
Q 001367 839 --------MPPSPTATSLAFNPHDNNVIAIGM-DDS---TILIY--NARSSEVISKL-------------EGHSKRVTGL 891 (1091)
Q Consensus 839 --------~~~~~~i~~l~~s~~~~~~la~g~-~dg---~i~iw--d~~~~~~~~~l-------------~~h~~~V~~l 891 (1091)
......+..+.|.+ ++.+++... ..+ .+.++ |..++...... ..|.......
T Consensus 248 ~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 326 (470)
T d2bgra1 248 QITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF 326 (470)
T ss_dssp EECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred ccCCccccCCCCceEEEEEEcC-CCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCcee
Confidence 12233567788988 666555432 222 33444 44555432221 1122222222
Q ss_pred EECCCCCEEEEEeCCCcEEEE--EcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-E-e-cC---eEEEE--
Q 001367 892 VFSDALNILVSSGGDAQIFVW--DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-H-ET---HLAIY-- 961 (1091)
Q Consensus 892 ~~spdg~~las~s~Dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~-~-d~---~i~vw-- 961 (1091)
.+.+++.+++.+..||...|| +..++. ..+...+.. .|..+ ++++++.+.. + . +. .-.||
T Consensus 327 ~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-----~~~lt~g~~----~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v 396 (470)
T d2bgra1 327 TLDGNSFYKIISNEEGYRHICYFQIDKKD-----CTFITKGTW----EVIGI-EALTSDYLYYISNEYKGMPGGRNLYKI 396 (470)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEETTCSC-----CEESCCSSS----CEEEE-EEECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred eecCCCcEEEEeccCcCceeEEEeccCCc-----eeeeccCCe----eEEEE-EEECCCEEEEEEecCCCCcceEEEEEE
Confidence 233333445667778766555 554432 223333433 35554 4445555432 2 2 21 22344
Q ss_pred EcCCcceeee---eecCCccCEEEEEEeeCCCEEEEE-Ec--CCcEEEEeCCCCceEEEee
Q 001367 962 EAEELTCLKQ---WFPISSVPISQATFSCDCRMVFTS-FV--DGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 962 d~~~~~~~~~---~~~~h~~~v~~v~fs~dg~~l~t~-~~--dg~v~iwd~~~~~~~~~~~ 1016 (1091)
++..+..... ...+|...+.+++|||||++++.. +. .-.+.+|+..+|+.+..+.
T Consensus 397 ~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le 457 (470)
T d2bgra1 397 QLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (470)
T ss_dssp ETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred ECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence 4444333322 234678889999999999997733 22 3358999999999887765
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.53 E-value=9.7e-15 Score=157.60 Aligned_cols=328 Identities=9% Similarity=-0.003 Sum_probs=196.8
Q ss_pred eEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEE
Q 001367 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 456 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1091)
..++|++.+|.|++||+.+++.++++.. |++.+. . ..+..+.+.+++. .......-..|.......
T Consensus 12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~--~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t 77 (441)
T d1qnia2 12 YGFWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSA--T-GWGITNESKEILG--GDQQYLNGDCHHPHISMT 77 (441)
T ss_dssp EEEEECBTTCCEEEEEETTTEEEEEECS---------SSBCTT--T-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEEE
T ss_pred EEEEeCCCCCcEEEEeCCCCcEEEEEEe---------EcCCCC--E-EEEECCccceEEe--cccccccCcccCCCccee
Confidence 4688999999999999999999988742 333221 1 1111111111110 011111112233344455
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCE--EEEEeCCC-------------
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ--ILAAGDDH------------- 600 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~--l~~~s~dg------------- 600 (1091)
.++|||++|++... .+..|.++|+.+++..+.+.-.. ...+..++|+|+++. ++..+++.
T Consensus 78 ~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~ 152 (441)
T d1qnia2 78 DGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLD 152 (441)
T ss_dssp TTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred cccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCcccccccc
Confidence 56899999988754 36679999999999888776432 367899999999984 44444332
Q ss_pred ----eEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCe-EEEEECCCCCeecccccccccceeeeeccc
Q 001367 601 ----VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR-IKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 601 ----~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
.+..+|..+.+...++..... ...+.++|+|+++++.+.+.. +..++..+......+
T Consensus 153 ~~~~~~~~iD~~t~~v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i--------------- 214 (441)
T d1qnia2 153 NSYTMFTAIDAETMDVAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWV--------------- 214 (441)
T ss_dssp GEEEEEEEEETTTCSEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEE---------------
T ss_pred cccceEEeecCccceeeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEE---------------
Confidence 245688888888877776543 578999999999988876532 211111111111000
Q ss_pred cccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCc
Q 001367 676 STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 755 (1091)
Q Consensus 676 ~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 755 (1091)
.+.+ .-..++++++|+++.. +.++
T Consensus 215 ----------------------------------~v~n---------------------~p~~~~~~~dGk~~~v-~~~~ 238 (441)
T d1qnia2 215 ----------------------------------VVFN---------------------VERIAAAVKAGNFKTI-GDSK 238 (441)
T ss_dssp ----------------------------------EEEE---------------------HHHHHHHHHTTCCBCC-TTCC
T ss_pred ----------------------------------EeCC---------------------ccceEEEecCCCEEEe-CCCC
Confidence 0000 0001223455553322 2334
Q ss_pred eEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCce
Q 001367 756 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK 833 (1091)
Q Consensus 756 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~ 833 (1091)
.+.++..... ..+.... -......++++|||+++++++ +++|.+||+.+..
T Consensus 239 v~vvd~~~~~----------------------~v~~~IP-----vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~ 291 (441)
T d1qnia2 239 VPVVDGRGES----------------------EFTRYIP-----VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD 291 (441)
T ss_dssp CCEEECSSSC----------------------SSEEEEC-----CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred cEEEEcccCC----------------------ceEEEEe-----CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhh
Confidence 4444432211 1011111 122346789999999998876 7999999987643
Q ss_pred eE--------EEe---cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc----------ceeeee-----ccccCC
Q 001367 834 TI--------LTI---MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS----------EVISKL-----EGHSKR 887 (1091)
Q Consensus 834 ~~--------~~~---~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~----------~~~~~l-----~~h~~~ 887 (1091)
.. ..+ ....-.....+|++ +|..+.+...|..|..|++... ..+..+ .||...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~ 370 (441)
T d1qnia2 292 DLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHA 370 (441)
T ss_dssp HHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEE
T ss_pred hHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcc
Confidence 21 011 11112345568999 8889999999999999998521 122333 578888
Q ss_pred eEEEEECCCCCEEEEEe
Q 001367 888 VTGLVFSDALNILVSSG 904 (1091)
Q Consensus 888 V~~l~~spdg~~las~s 904 (1091)
+.+.+++|||++|++++
T Consensus 371 ~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 371 SLTESRDADGKWLVVLS 387 (441)
T ss_dssp TTTTSTTCCCCEEEEEE
T ss_pred ccccccCCCCcEEEecC
Confidence 88889999999999994
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.45 E-value=6.2e-14 Score=151.25 Aligned_cols=290 Identities=11% Similarity=-0.019 Sum_probs=182.3
Q ss_pred CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEecccc--------ccce-----eeeeecCCCccEEEEEECCCCCEE
Q 001367 345 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC--------SMLF-----KTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 345 dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~--------~~~~-----~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
|+-+.+++|+.+|.|.||++.+++.+... +++..... .... ...-...|.-......++|||++|
T Consensus 9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~I--pVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~l 86 (441)
T d1qnia2 9 DEYYGFWSGGHQGEVRVLGVPSMRELMRI--PVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYL 86 (441)
T ss_dssp CSEEEEEECBTTCCEEEEEETTTEEEEEE--CSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEE
T ss_pred CCEEEEEeCCCCCcEEEEeCCCCcEEEEE--EeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEE
Confidence 44566789999999999999999988643 23221100 0000 000012244566677778999999
Q ss_pred EEEE-CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC-----------------cEEEEeCC
Q 001367 412 GVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-----------------TIKVWDAV 473 (1091)
Q Consensus 412 as~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~-----------------~i~iwd~~ 473 (1091)
.+.. .++.|.++|+.+++..+.. . -.+...+..++|+|||+..+++..+.+. .+..+|..
T Consensus 87 fV~d~~~~rVavIDl~t~k~~~ii-~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~ 164 (441)
T d1qnia2 87 FINDKANTRVARIRLDIMKTDKIT-H-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE 164 (441)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEE-E-CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT
T ss_pred EEEcCCCCEEEEEECCCCcEeeEE-e-cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCc
Confidence 7764 6779999999998755422 1 1456679999999999976666555432 23457878
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEecCC-eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
+.+....+... .....+.+ +++|.++++.+.+. .+..++..+......+... ..-..+.++|+|+++..++
T Consensus 165 t~~v~~qI~v~-~~p~~v~~--spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~dGk~~~v~~---- 236 (441)
T d1qnia2 165 TMDVAWQVIVD-GNLDNTDA--DYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIGD---- 236 (441)
T ss_dssp TCSEEEEEEES-SCCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHHTTCCBCCTT----
T ss_pred cceeeEEEecC-CCccceEE--CCCCCEEEEEecCCCceEEEeccCcceEEEEEeC-CccceEEEecCCCEEEeCC----
Confidence 77777666533 34566677 45677777776543 2322332222222111100 0112234678999876543
Q ss_pred CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeE----------EEEeCCCC
Q 001367 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL----------TTIDAGGG 621 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~----------~~~~~~~~ 621 (1091)
++.+.+++......+..+.... ....+.++|||+++++ +..+++|.+||+++.... .......+
T Consensus 237 -~~v~vvd~~~~~~v~~~IPvgk----sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~g 311 (441)
T d1qnia2 237 -SKVPVVDGRGESEFTRYIPVPK----NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELG 311 (441)
T ss_dssp -CCCCEEECSSSCSSEEEECCBS----SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCC
T ss_pred -CCcEEEEcccCCceEEEEeCCC----CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccc
Confidence 4457777767666666666543 4677899999999876 568999999998653210 01111111
Q ss_pred CCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 622 LPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
-.....+|+++|..+.+...|..|..|++.
T Consensus 312 -lgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 312 -LGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp -SCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred -cCcccceecCCceEEEcccccceEEEeccc
Confidence 123456899999888888899999999975
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.28 E-value=8.8e-09 Score=111.11 Aligned_cols=159 Identities=12% Similarity=0.115 Sum_probs=101.6
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEEccC-ceeE--EEe--cCCCCCeEEEEEcCCCCcEEE-EEeCCCeEEEEeccC
Q 001367 803 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTI--LTI--MPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARS 874 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~--~~~--~~~~~~i~~l~~s~~~~~~la-~g~~dg~i~iwd~~~ 874 (1091)
.+.+++|+|||+++++++ .+.|.+|+... +... ... .......+.++|+| +++++. +...+++|.+|++..
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence 467899999999999887 36788887653 2222 222 22456789999999 777664 455678999999976
Q ss_pred cceeeeec-------------------cccCCeEEEEECCCCCEEEEEeC-C-----CcEEEEEcCCCce-eeeeeeecc
Q 001367 875 SEVISKLE-------------------GHSKRVTGLVFSDALNILVSSGG-D-----AQIFVWDVDGWGI-QTCRSLQTP 928 (1091)
Q Consensus 875 ~~~~~~l~-------------------~h~~~V~~l~~spdg~~las~s~-D-----g~i~vwd~~~~~~-~~~~~~~~~ 928 (1091)
++...... .+......+.++|||++|+++.. + +.|..|++..... .....+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 304 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence 54321110 12223567899999999887643 2 2377777765321 111121111
Q ss_pred CCCcCCCCCceEEEEcC-CCCEEEEE--ecCeEEEEEcCC
Q 001367 929 DGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEE 965 (1091)
Q Consensus 929 ~~~~~~~~~i~~l~fs~-dg~~la~~--~d~~i~vwd~~~ 965 (1091)
...- .....++|+| +|++|+++ .++.|.+|++..
T Consensus 305 ~~~G---~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 305 PTSG---GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp SSCC---TTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EcCC---CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 1111 1356799998 89998885 568899998654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.23 E-value=2.7e-09 Score=115.22 Aligned_cols=254 Identities=10% Similarity=0.114 Sum_probs=151.1
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCeEEEEEccC-ceeEEEe-cCCCCCeEEEEEcCCCCcE--EEEEe-CCCeEEEEeccC
Q 001367 800 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTI-MPPSPTATSLAFNPHDNNV--IAIGM-DDSTILIYNARS 874 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~-~~~~~~~-~~~~~~i~~l~~s~~~~~~--la~g~-~dg~i~iwd~~~ 874 (1091)
....+..++++|++++|.++..+.+..|.+.. +...... .........+++++ +++. ++++. ..++|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence 34556789999999999998888888887763 2222221 12234556788888 6763 33322 234555544321
Q ss_pred -------------cce---eee-eccccCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCc-eeeeeeeeccCCCcCCC
Q 001367 875 -------------SEV---ISK-LEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWG-IQTCRSLQTPDGVMTLA 935 (1091)
Q Consensus 875 -------------~~~---~~~-l~~h~~~V~~l~~spdg~~las~s~-Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~ 935 (1091)
++. ... -......+.+++|+|||+++++++. ...|.+|++.... .............
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g---- 192 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG---- 192 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT----
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC----
Confidence 110 000 1112234789999999999887764 4568888765432 2211112222111
Q ss_pred CCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcceeeeee------------------cCCccCEEEEEEeeCCCEEEEE
Q 001367 936 PSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWF------------------PISSVPISQATFSCDCRMVFTS 995 (1091)
Q Consensus 936 ~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~~~~~~~------------------~~h~~~v~~v~fs~dg~~l~t~ 995 (1091)
.....++|+|||+++.+. .+++|.+|+...+....... ..+......+.++|||++|+++
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 257899999999998774 46789999987654321110 0112345678999999998876
Q ss_pred Ec-C-----CcEEEEeCCCCceEEEee-cccccCCCCcccccceeEEEeCCCCCCeEEEE-ecCCcEEEEecCCCC
Q 001367 996 FV-D-----GTLSIHEASNLEVQCRIL-STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG-LTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 996 ~~-d-----g~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g-~~dg~v~~w~~~~~~ 1063 (1091)
.. + +.|..|++.....+.+.. ....... .-.+..++++|.+|++|+++ ..++.|.+|++....
T Consensus 273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-----G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-----GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-----CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cccCCCccceEEEEEEecCCCceeeEeEeeEEEcC-----CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 43 1 237778776543332221 1111111 12345688998667766555 677899999986544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.9e-09 Score=120.08 Aligned_cols=375 Identities=9% Similarity=-0.008 Sum_probs=205.0
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe---------CCCeEEEEE
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---------DDHVIKIWD 606 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s---------~dg~i~iwd 606 (1091)
.|.+++.++.. +.++.|.+||+.+++....+.........+....|+||+++++... ..+.+.++|
T Consensus 23 ~W~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYR-----EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCC-----CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEE-----eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 57788776543 2244699999998876555555443334677788999999988764 357889999
Q ss_pred CCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCC
Q 001367 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1091)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g 686 (1091)
+.++..............+....|||||+.+|.... +.|++.+..++...+........
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-~nl~~~~~~~~~~~~lt~~g~~~-------------------- 156 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG-------------------- 156 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--------------------
T ss_pred ccCCceeeccCccCCccccceeeeccCCceEEEEec-ceEEEEecCCCceEEEecccCcc--------------------
Confidence 999876554433333334667899999999988764 67888887765443322111000
Q ss_pred cccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC-ceEEEeecCCc
Q 001367 687 SVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRN 765 (1091)
Q Consensus 687 ~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~vw~~~~~ 765 (1091)
.+..|-.| |-.+. . -...-.++.|||||++|+....| ..+..+.+...
T Consensus 157 ------------~i~nG~~d-----~vyee-----------e---~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~ 205 (465)
T d1xfda1 157 ------------VIYNGLSD-----WLYEE-----------E---ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY 205 (465)
T ss_dssp ------------TEEEEECC-----HHHHH-----------T---TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred ------------eeeccccc-----hhhhh-----------h---hccccceEEECCCCCeEEEEEecccccceeecccc
Confidence 00000000 10000 0 00111345677777777766543 44444443321
Q ss_pred cc-----------ccccceeeccCCccccCCCCCceeeecCCC--CCCCCCeeEEEecCCCCEEEEEeC-----CeEEEE
Q 001367 766 DL-----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTD--SNSQEAVPCFALSKNDAYLFSASG-----GVISLY 827 (1091)
Q Consensus 766 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~s~dg~~la~~~d-----g~i~iw 827 (1091)
.. ...+.......+.++++.++.......... .....-+..+.|++++++++...+ ..+.++
T Consensus 206 ~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~ 285 (465)
T d1xfda1 206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC 285 (465)
T ss_dssp SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred cccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEE
Confidence 11 011111111234456665544222111110 012223677899999987777652 248889
Q ss_pred EccCceeEEEecCC-CCC----eEEEEEcCCCCcEE-EE--EeCCC--eEEEEecc------CcceeeeeccccCCeEEE
Q 001367 828 IVMTFKTILTIMPP-SPT----ATSLAFNPHDNNVI-AI--GMDDS--TILIYNAR------SSEVISKLEGHSKRVTGL 891 (1091)
Q Consensus 828 d~~~~~~~~~~~~~-~~~----i~~l~~s~~~~~~l-a~--g~~dg--~i~iwd~~------~~~~~~~l~~h~~~V~~l 891 (1091)
|..++++...+... ... -....|++ +|+.+ .. ...+| .++...+. .++.+..+....-.|..+
T Consensus 286 d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i 364 (465)
T d1xfda1 286 DATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI 364 (465)
T ss_dssp ETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred cCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEE
Confidence 99998876554322 111 23467999 55532 22 22333 34444332 234445555445567765
Q ss_pred -EECCCCCEEE-EEeCCC--cEEEEEc--CCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecC----eEEEE
Q 001367 892 -VFSDALNILV-SSGGDA--QIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIY 961 (1091)
Q Consensus 892 -~~spdg~~la-s~s~Dg--~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~----~i~vw 961 (1091)
+|+++++.+. ++..++ .-.+|.+ .++.. ..++....... .....+.|||+|++++....+ .+.++
T Consensus 365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~~~---~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~ 439 (465)
T d1xfda1 365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTVH 439 (465)
T ss_dssp EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEEE
T ss_pred EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccCCC---CCEEEEEECCCCCEEEEEeecCCCCeEEEE
Confidence 6888887765 444332 2335544 33221 12222111111 246789999999999974332 57788
Q ss_pred EcCCcceeeeee
Q 001367 962 EAEELTCLKQWF 973 (1091)
Q Consensus 962 d~~~~~~~~~~~ 973 (1091)
+..+++.+..+.
T Consensus 440 ~~~~~~~~~~Le 451 (465)
T d1xfda1 440 NTTDKKKMFDLE 451 (465)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCCEEEEEc
Confidence 877777766543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.13 E-value=1.9e-08 Score=105.48 Aligned_cols=246 Identities=11% Similarity=0.039 Sum_probs=161.6
Q ss_pred CCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccE
Q 001367 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1091)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1091)
+.-|.+++.++...+ .+..++++|||+ |+++...+++|..|+... +... +......+
T Consensus 14 ~~~~~~v~~~~p~~~-~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g-~~~~--------------------~~~~~~~~ 70 (302)
T d2p4oa1 14 ELAPAKIITSFPVNT-FLENLASAPDGT-IFVTNHEVGEIVSITPDG-NQQI--------------------HATVEGKV 70 (302)
T ss_dssp CCCCEEEEEEECTTC-CEEEEEECTTSC-EEEEETTTTEEEEECTTC-CEEE--------------------EEECSSEE
T ss_pred cCCcccEEEECCCCC-CcCCEEECCCCC-EEEEeCCCCEEEEEeCCC-CEEE--------------------EEcCCCCc
Confidence 444555666665544 688999999998 778888899998888553 3221 22355789
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
.+++|+|||+++++...++.+..|+............-.........+++.++++ ++++.+.++.+..+|..++....
T Consensus 71 ~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~ 148 (302)
T d2p4oa1 71 SGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSI 148 (302)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEE
T ss_pred ceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCccee
Confidence 9999999999999998888888888876543222111223445688999999998 78888888889999887765332
Q ss_pred EecC--------C--CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee--ecCCCCcEEEEEEcCCCCEEEEE
Q 001367 480 SFEG--------H--GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 480 ~~~~--------~--~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
.... + ......+.+ . ++.++++.+..+.|..++......... ..........++++++|+..++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~ngi~~--~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~ 225 (302)
T d2p4oa1 149 WLEHPMLARSNSESVFPAANGLKR--F-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT 225 (302)
T ss_dssp EEECGGGSCSSTTCCSCSEEEEEE--E-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred EecCCccceeeccCcccccccccc--c-CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEE
Confidence 2211 1 122344444 3 235677778888888888776443321 11122345679999999977665
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEE---cCCCCEEEEEeCC
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF---DTAKDQILAAGDD 599 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~---~~~~~~l~~~s~d 599 (1091)
.. .+.|..++... +......... ......+++| ++|++.|++++..
T Consensus 226 ~~----~~~V~~i~p~G-~~~~~~~~~~-~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 226 HI----YNSVVRIAPDR-STTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp BT----TCCEEEECTTC-CEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cC----CCcEEEECCCC-CEEEEEecCC-CCCCceEEEEcCCCCCCCEEEEECCC
Confidence 43 45588887654 3322322211 1246889999 6788888776543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=2.3e-08 Score=103.12 Aligned_cols=223 Identities=9% Similarity=0.122 Sum_probs=133.9
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCC---EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEE
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKH---IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~---~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1091)
..+...+.+.+|||||++||...... .+.+.+..++... .+..+........|+|+|+.+ +.....++...+
T Consensus 35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~ 109 (269)
T d2hqsa1 35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNL 109 (269)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEE
T ss_pred ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCee-eEeeecCCccce
Confidence 34567788999999999999875443 4666666655422 355677888999999999963 223333333333
Q ss_pred E--eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCe--EEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEE
Q 001367 470 W--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 470 w--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
+ ......... ............+... ....+++...+|. |...++...... .............++|+++.++
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~ 186 (269)
T d2hqsa1 110 YVMDLASGQIRQ-VTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMV 186 (269)
T ss_dssp EEEETTTCCEEE-CCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEE
T ss_pred eeccccccccee-eeeccccccccccccc-cccceecccccCCceEeeeecccccce-eeecccccccccccccccceeE
Confidence 3 222222222 2222222233333333 2234555555565 444455444332 3344455677889999999999
Q ss_pred EEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeEEEEeCCCCC
Q 001367 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGL 622 (1091)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1091)
...... +...+.+.+...+... ... .. .......|+|||+.|+..+. ...|++++++.+....... ..
T Consensus 187 ~~~~~~-~~~~i~~~~~~~~~~~-~~~-~~---~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~-~~-- 257 (269)
T d2hqsa1 187 MVSSNG-GQQHIAKQDLATGGVQ-VLS-ST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA-TD-- 257 (269)
T ss_dssp EEEECS-SCEEEEEEETTTCCEE-ECC-CS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC-SS--
T ss_pred EEeecC-CceeeeEeecccccce-Eee-cC---ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeC-CC--
Confidence 876543 4566777787766542 222 22 45567789999999876543 4568899998776544333 22
Q ss_pred CCCceEEEcc
Q 001367 623 PENPRICFNK 632 (1091)
Q Consensus 623 ~~v~~v~~s~ 632 (1091)
..+...+|+|
T Consensus 258 g~~~~p~WSP 267 (269)
T d2hqsa1 258 GQVKFPAWSP 267 (269)
T ss_dssp SEEEEEEECC
T ss_pred CcEEeEEeCC
Confidence 2456778887
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=1.2e-07 Score=97.50 Aligned_cols=234 Identities=15% Similarity=0.086 Sum_probs=145.9
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCc--EEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
....+.+..+...+..-+|||||++|+.+....+. +.+.+..++.... +..+......
T Consensus 28 G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~ 87 (269)
T d2hqsa1 28 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGA 87 (269)
T ss_dssp SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSCEEE
T ss_pred CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eeeeeccccc
Confidence 34445555666788999999999987666555443 5555555554332 4457788899
Q ss_pred EEECCCCCEEEEEECC-CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCcee
Q 001367 402 VVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT 478 (1091)
Q Consensus 402 l~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~ 478 (1091)
..|||||+.++..... +...++......... ..............+++++.. .+++...++ .|.+.++..+..
T Consensus 88 ~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~~- 163 (269)
T d2hqsa1 88 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAP- 163 (269)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCC-
T ss_pred ceecCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeeecccccc-
Confidence 9999999999887643 333333333322111 122334455566778888885 444555555 455556555543
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEe-cCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
..+..+........+ ++++..++..+ ..+...+|..+...................|||||++|+..+.. .+...|
T Consensus 164 ~~~~~~~~~~~~~~~--spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~~~~~l 240 (269)
T d2hqsa1 164 QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-GMGSVL 240 (269)
T ss_dssp EECCCSSSEEEEEEE--CTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-TTEEEE
T ss_pred eeeeccccccccccc--ccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC-CCCcEE
Confidence 333344555555566 44566665554 44555666555544444555555566788999999999876643 346789
Q ss_pred EEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
+++++..+...+ +.... ..+...+|+|
T Consensus 241 ~~~~~dg~~~~~-lt~~~---g~~~~p~WSP 267 (269)
T d2hqsa1 241 NLVSTDGRFKAR-LPATD---GQVKFPAWSP 267 (269)
T ss_dssp EEEETTSCCEEE-CCCSS---SEEEEEEECC
T ss_pred EEEECCCCCEEE-EeCCC---CcEEeEEeCC
Confidence 999998776544 43333 5677888988
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.96 E-value=9.9e-08 Score=97.27 Aligned_cols=238 Identities=10% Similarity=0.050 Sum_probs=153.2
Q ss_pred CCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce
Q 001367 800 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 877 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~ 877 (1091)
+......++++++|...++.. .+.+..++..+................+++++ +++++++....+.+++++-.++..
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence 445678999999999777654 46677666554333222222234567899999 788887777777777776555554
Q ss_pred eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecC
Q 001367 878 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 956 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~ 956 (1091)
+....+ .....++++.++|+++++-.....+..++...... ......+. .....++++++|+++++ ..++
T Consensus 91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~ 161 (260)
T d1rwia_ 91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGL----NDPDGVAVDNSGNVYVTDTDNN 161 (260)
T ss_dssp ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCCCSC----CSCCEEEECTTCCEEEEEGGGT
T ss_pred eeeeee-eeecccccccccceeEeecccccccccccccccee----eeeeeccc----CCcceeeecCCCCEeeeccccc
Confidence 444332 34578999999999888776677777777665331 11111221 13578999999998777 4667
Q ss_pred eEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEE
Q 001367 957 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1036 (1091)
Q Consensus 957 ~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1036 (1091)
.|..+|....... .+..........+++.++|.++++....+.|..++....... .+. . ..--.|..++
T Consensus 162 ~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~------~---~~~~~P~~i~ 230 (260)
T d1rwia_ 162 RVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP------F---TGLNTPLAVA 230 (260)
T ss_dssp EEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC------C---CSCCCEEEEE
T ss_pred cccccccccceee-eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc------c---CCCCCeEEEE
Confidence 8999997754433 223334556789999999998888777888888876654322 111 0 0112356788
Q ss_pred eCCCCCCeEEEEecCCcEEEEec
Q 001367 1037 AHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1037 ~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
++++ +.++++-..++.|..++.
T Consensus 231 ~d~~-g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 231 VDSD-RTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp ECTT-CCEEEEEGGGTEEEEECC
T ss_pred EeCC-CCEEEEECCCCEEEEEeC
Confidence 8984 777777666776665544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.93 E-value=1.1e-07 Score=96.89 Aligned_cols=239 Identities=9% Similarity=-0.029 Sum_probs=148.6
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
-....++++++|..+++..+..+.+..++..+...... ..+-......++++++|++.++.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v~d 74 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 74 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEEee
Confidence 35689999999985555555567777776554332211 11112345778999999988777
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
...+.+++++-.++..+. .. ........+++.++++ ++++-.....+..++...................+++.
T Consensus 75 ~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~ 148 (260)
T d1rwia_ 75 FNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD 148 (260)
T ss_dssp TTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC
T ss_pred eeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceeeec
Confidence 666666666554443221 11 2234578999999998 66666666778888755443222111222345677774
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecc
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1091)
+++.++++...++.|..++.+.................+++.++|+.+++... .+.|..++...... ..+...
T Consensus 149 --~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~~-~~~~~~ 221 (260)
T d1rwia_ 149 --NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTS-TVLPFT 221 (260)
T ss_dssp --TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSCC-EECCCC
T ss_pred --CCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCeE-EEEccC
Confidence 46678888888899999987765544433334455688999999987776643 55677777654432 222211
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 575 ~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
. ......++++++|+.+++-..++.|+.++.
T Consensus 222 ~--~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 222 G--LNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp S--CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred C--CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 1 245788999999887776566666665553
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=5.9e-07 Score=99.52 Aligned_cols=228 Identities=10% Similarity=0.093 Sum_probs=138.5
Q ss_pred EEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC----
Q 001367 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---- 416 (1091)
Q Consensus 341 ~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---- 416 (1091)
.|.+++. ++. -..+|.|.+||+.+++..... + . ..-....+....||||+++++....
T Consensus 23 ~W~~~~~-~~~-~~~~g~i~~~~~~~~~~~~l~-----~---------~--~~~~~~~~~~~~~SpD~~~vl~~~~~~~~ 84 (465)
T d1xfda1 23 KWISDTE-FIY-REQKGTVRLWNVETNTSTVLI-----E---------G--KKIESLRAIRYEISPDREYALFSYNVEPI 84 (465)
T ss_dssp CBSSSSC-BCC-CCSSSCEEEBCGGGCCCEEEE-----C---------T--TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred EEeCCCc-EEE-EeCCCcEEEEECCCCCEEEEE-----c---------C--ccccccccceeEECCCCCeEEEEEcccce
Confidence 5788887 333 345789999999988753210 0 0 0112246677899999999988743
Q ss_pred -----CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec-CCCcce--
Q 001367 417 -----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPV-- 488 (1091)
Q Consensus 417 -----d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v-- 488 (1091)
.+.+.++|+.++.... +.........+....|||||+. ++-.. ++.|.+.+..++..++... +....|
T Consensus 85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~n 160 (465)
T d1xfda1 85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYN 160 (465)
T ss_dssp SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred eEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceeec
Confidence 4678999999876432 1111223445677899999995 44433 6678888887776654432 222222
Q ss_pred ---------------EEEeecccCCceEEEEEecC-C---------------------------------eEEEEecCCC
Q 001367 489 ---------------YSLCPHAKENIHFIFSISVD-G---------------------------------KIKAWLYDSL 519 (1091)
Q Consensus 489 ---------------~~~~~~~~~~~~~l~s~~~d-g---------------------------------~i~iwd~~~~ 519 (1091)
.++-| ++||++|+....| . .+.++|++.+
T Consensus 161 G~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~ 238 (465)
T d1xfda1 161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (465)
T ss_dssp EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred cccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCC
Confidence 23334 6788888876432 2 2334444443
Q ss_pred CceeeecCC------CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccce----EEEEEcCC
Q 001367 520 GARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV----SVVHFDTA 589 (1091)
Q Consensus 520 ~~~~~~~~~------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v----~~v~~~~~ 589 (1091)
......... ..-+..+.|+++++.++...........+.++|..+++....+.... ...| ....|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~--~~wv~~~~~~p~~~~d 316 (465)
T d1xfda1 239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSKD 316 (465)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECTT
T ss_pred cEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC--CceEeccCCceeEccC
Confidence 332221111 11356789999998776655444445678999999998766654332 1222 23578899
Q ss_pred CCEEE
Q 001367 590 KDQIL 594 (1091)
Q Consensus 590 ~~~l~ 594 (1091)
|+.++
T Consensus 317 g~~~~ 321 (465)
T d1xfda1 317 GRKFF 321 (465)
T ss_dssp SCSEE
T ss_pred CCeeE
Confidence 88543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.90 E-value=1.2e-06 Score=90.02 Aligned_cols=242 Identities=13% Similarity=0.139 Sum_probs=162.0
Q ss_pred ccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCC--CCCCCCCeeEEEecC
Q 001367 734 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT--DSNSQEAVPCFALSK 811 (1091)
Q Consensus 734 ~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~s~ 811 (1091)
.....++++++|+.+++-..+..|++|+..... +..+... ..+.......+++.+
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~-----------------------~~~~~~~~~~~~~~~~p~~~~~~~ 79 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF-----------------------KFQFGECGKRDSQLLYPNRVAVVR 79 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE-----------------------EEEECCBSSSTTCBSSEEEEEEET
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCCCCE-----------------------EEEecccCCCcccccccccccccc
Confidence 346789999999976666667888888743211 1111000 001222344566655
Q ss_pred CC-CEEEEEe--CCeEEEEEccCceeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee--cccc
Q 001367 812 ND-AYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHS 885 (1091)
Q Consensus 812 dg-~~la~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l--~~h~ 885 (1091)
+. ..+++.. ++.|..++. .++....+.. .......+++.+ +++++++....+.+.+++.. ++.+..+ ..+.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~ 156 (279)
T d1q7fa_ 80 NSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHL 156 (279)
T ss_dssp TTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTC
T ss_pred cccccceeccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccc
Confidence 54 4444443 367777775 4666666543 345678999999 78888887878889998865 5655554 3466
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e-cCeEEEEEc
Q 001367 886 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-ETHLAIYEA 963 (1091)
Q Consensus 886 ~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~-d~~i~vwd~ 963 (1091)
.....+++.++|+.+++....+.|++||....... .+. ..+.. .....+++.++|+.+++- . +..|.+|+.
T Consensus 157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~---~~g-~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 157 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLR---QIG-GEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp SSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEE---EES-CTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred cccceeeeccceeEEeeeccccceeeeecCCceee---eec-ccccc---cCCcccccccCCeEEEEECCCCcEEEEECC
Confidence 77889999999999998888999999998763211 111 12222 256799999999988873 3 447999984
Q ss_pred CCcceeeeeecC-CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 964 EELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 964 ~~~~~~~~~~~~-h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
+|+.+..+... .......|++.+||.+++ ++.+.+|++|......
T Consensus 230 -~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 230 -DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA 275 (279)
T ss_dssp -TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred -CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence 57776665432 234678999999997555 5678999999987653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.86 E-value=8.3e-07 Score=92.73 Aligned_cols=247 Identities=14% Similarity=0.094 Sum_probs=154.5
Q ss_pred CCcEEEEEcCCCceEEEEEcC-------CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 335 SSPMSMDFHPVQHTLLLVGTN-------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~-------dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
.....++|.|||+ +.++... +|+|..||..++....... ............++|.++
T Consensus 18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~---------------~~~~~~~g~P~Gl~~~~d 81 (314)
T d1pjxa_ 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------PEVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------CEETTEECCEEEEEECSS
T ss_pred CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEEC---------------CccccCCCcceeEEEeCC
Confidence 3667889999998 4444322 4678899988876543200 001111234678999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEeeC---------------CCcEEEEe
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---------------DKTIKVWD 471 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~~---------------d~~i~iwd 471 (1091)
|..|+++...+.|...+..++..........+.. ...+.+++.++|. +.++-.. +|.|..++
T Consensus 82 g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~ 159 (314)
T d1pjxa_ 82 ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEe
Confidence 9988888877778888877653211000001111 1357899999998 5555321 23455555
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCc---eEEEEEecCCeEEEEecCCCCcee------eecC-CCCcEEEEEEcCCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENI---HFIFSISVDGKIKAWLYDSLGARV------DYDA-PGLGCTRMAYSANG 541 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~------~~~~-~~~~i~~~~~s~d~ 541 (1091)
. .++..... ..-..-+.++|++..++ .+.++-+..+.|..|++....... .+.. .......+++..+|
T Consensus 160 ~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G 237 (314)
T d1pjxa_ 160 T-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp T-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred e-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC
Confidence 3 34333222 22233467788765543 245556778889999876544332 1111 12245689999999
Q ss_pred CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE-EeCCCeEEEEECC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN 608 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd~~ 608 (1091)
+..++... .+.|.+||...++.+..+.... ....+++|.|+++.|+. .+.+|.|...++.
T Consensus 238 nlyVa~~~----~g~I~~~dp~~g~~~~~i~~p~---~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 238 NLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred cEEEEEcC----CCEEEEEeCCCCEEEEEEECCC---CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 98776643 5669999998888776666544 57889999999876654 5677888887764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.85 E-value=2.3e-06 Score=87.81 Aligned_cols=241 Identities=10% Similarity=0.098 Sum_probs=161.2
Q ss_pred CCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCC------CCCeEEEEEcCCCCcEEEEE-eCCCeEEEEecc
Q 001367 802 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIG-MDDSTILIYNAR 873 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~la~g-~~dg~i~iwd~~ 873 (1091)
.....++++++|+.+++-. ++.|++||.+ |+.+..+... ......+++.++.+.++++. +.++.|..++..
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 3468999999999776654 5889999965 6666666321 11345667665345555543 445678888764
Q ss_pred Ccceeeeec-cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 874 SSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 874 ~~~~~~~l~-~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
++....+. ........+++.++|+++++....+.+.+++....... .+.. ..+. .....+++.++|..+++
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~---~~g~-~~~~---~~~~~i~~d~~g~i~v~ 173 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH---KFGC-SKHL---EFPNGVVVNDKQEIFIS 173 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE---EEEC-TTTC---SSEEEEEECSSSEEEEE
T ss_pred -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceee---cccc-cccc---cccceeeeccceeEEee
Confidence 55555543 34566788999999998888777788888876652211 1111 1222 25778999999988877
Q ss_pred E-ecCeEEEEEcCCcceeeeee-cCCccCEEEEEEeeCCCEEEEEEc-CCcEEEEeCCCCceEEEeecccccCCCCcccc
Q 001367 953 V-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1029 (1091)
Q Consensus 953 ~-~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~v~fs~dg~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1091)
. ..+.|++||.. |+.+..+- .++......|++.++|+.+++-.. ++.|.+|+ .+|+.+..+..... .
T Consensus 174 d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~--------~ 243 (279)
T d1q7fa_ 174 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVK--------H 243 (279)
T ss_dssp EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSC--------C
T ss_pred eccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCC--------C
Confidence 4 56789999964 56665542 234556789999999997776543 45799998 46887766652211 1
Q ss_pred cceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1030 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1030 v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
-.+..++..| ||. |++++.++.|++|+...-+
T Consensus 244 ~~p~~vav~~-dG~-l~V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 244 AQCFDVALMD-DGS-VVLASKDYRLYIYRYVQLA 275 (279)
T ss_dssp SCEEEEEEET-TTE-EEEEETTTEEEEEECSCCC
T ss_pred CCEeEEEEeC-CCc-EEEEeCCCeEEEEEeeeec
Confidence 2355677888 455 5566789999999985544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.85 E-value=3.5e-07 Score=95.70 Aligned_cols=239 Identities=13% Similarity=0.133 Sum_probs=152.1
Q ss_pred CeeEEEecCCCCEEEEEe--------CCeEEEEEccCceeEEEecCC----CCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001367 803 AVPCFALSKNDAYLFSAS--------GGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIY 870 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~--------dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~~la~g~~dg~i~iw 870 (1091)
....+++.++|++.++.. +++|..||..++......... ......++|.+ ++..++++...+.|..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence 456789999999887653 357888898887654433221 23457899999 77777777777788888
Q ss_pred eccCcceeeeecccc----CCeEEEEECCCCCEEEEEeC---------------CCcEEEEEcCCCceeeeeeeeccCCC
Q 001367 871 NARSSEVISKLEGHS----KRVTGLVFSDALNILVSSGG---------------DAQIFVWDVDGWGIQTCRSLQTPDGV 931 (1091)
Q Consensus 871 d~~~~~~~~~l~~h~----~~V~~l~~spdg~~las~s~---------------Dg~i~vwd~~~~~~~~~~~~~~~~~~ 931 (1091)
+...+.......... .....+++.++|++.+|-.. +|.|..++.+. +.. .......
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~--~~~~~~~-- 172 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMI--QVDTAFQ-- 172 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEE--EEEEEES--
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-cee--EeeCCcc--
Confidence 877554322111111 13578999999998887432 22344443332 211 1111111
Q ss_pred cCCCCCceEEEEcCCCC----EEEEE--ecCeEEEEEcCCcceee------eeecCCccCEEEEEEeeCCCEEEEEEcCC
Q 001367 932 MTLAPSETHIQFHKDQT----RFLLV--HETHLAIYEAEELTCLK------QWFPISSVPISQATFSCDCRMVFTSFVDG 999 (1091)
Q Consensus 932 ~~~~~~i~~l~fs~dg~----~la~~--~d~~i~vwd~~~~~~~~------~~~~~h~~~v~~v~fs~dg~~l~t~~~dg 999 (1091)
....++|+|++. .|.++ ..+.|..||+.....+. .+...+......+++.++|++.++....+
T Consensus 173 -----~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g 247 (314)
T d1pjxa_ 173 -----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp -----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred -----eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence 235789999875 44443 56788888876433221 11111233456899999999888877889
Q ss_pred cEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCC-eEEEEecCCcEEEEecCCCC
Q 001367 1000 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1000 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~-~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
.|.+||.+.+.....+.... -.+.+++|.|+ ++ ++++.+.+|.|...++...+
T Consensus 248 ~I~~~dp~~g~~~~~i~~p~----------~~~t~~afg~d-~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 248 HIEVFGPDGGQPKMRIRCPF----------EKPSNLHFKPQ-TKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEEEECTTCBSCSEEEECSS----------SCEEEEEECTT-SSEEEEEETTTTEEEEEECSSCB
T ss_pred EEEEEeCCCCEEEEEEECCC----------CCEEEEEEeCC-CCEEEEEECCCCcEEEEECCCCC
Confidence 99999999888765554111 12446889994 55 66777788888888886655
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.84 E-value=2.7e-07 Score=96.38 Aligned_cols=234 Identities=10% Similarity=0.029 Sum_probs=147.3
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce-eee
Q 001367 803 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISK 880 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~-~~~ 880 (1091)
.+..++++|||+++++.. +++|..|+.... ...+......+.+++|++ +|+++++...++.+..|+...... ...
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceee
Confidence 578899999999888876 688888885533 233444567889999999 888999888888888888765332 112
Q ss_pred e--ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec--cCCCcCCCCCceEEEEcCCCCEEEE--Ee
Q 001367 881 L--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMTLAPSETHIQFHKDQTRFLL--VH 954 (1091)
Q Consensus 881 l--~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~fs~dg~~la~--~~ 954 (1091)
+ .........+++.++|+++++.+.++.+..++..++.......-.. .............+.++ +..+.. ..
T Consensus 106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~ 183 (302)
T d2p4oa1 106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTE 183 (302)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETT
T ss_pred ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCC
Confidence 2 1244568899999999999998889989888888765322111000 00111111123455554 444544 46
Q ss_pred cCeEEEEEcCCcceeeeee-cCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCccccccee
Q 001367 955 ETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1033 (1091)
Q Consensus 955 d~~i~vwd~~~~~~~~~~~-~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1033 (1091)
.+.|..++........... ..+......++|++||.++++...++.|..++....... ..... . ....+.
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~-~~~~~--~------~~~~pt 254 (302)
T d2p4oa1 184 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTI-IAQAE--Q------GVIGST 254 (302)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEE-EECGG--G------TCTTEE
T ss_pred CCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEE-EEecC--C------CCCCce
Confidence 6788888876543322111 111334567999999998888878899999977643222 11100 0 112356
Q ss_pred EEEe---CCCCCCeEEEEecC
Q 001367 1034 AIAA---HPLKPTQFAVGLTN 1051 (1091)
Q Consensus 1034 ~~~~---~p~d~~~l~~g~~d 1051 (1091)
+++| .| |++.|.++...
T Consensus 255 ~vafg~~~~-D~~~Lyvtt~~ 274 (302)
T d2p4oa1 255 AVAFGQTEG-DCTAIYVVTNG 274 (302)
T ss_dssp EEEECCSTT-TTTEEEEEECT
T ss_pred EEEEcCCCC-CCCEEEEECCC
Confidence 7888 44 56766655443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.75 E-value=3.7e-06 Score=88.08 Aligned_cols=232 Identities=9% Similarity=0.070 Sum_probs=146.7
Q ss_pred CCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEeccCcc
Q 001367 802 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE 876 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~----dg~i~iwd~~~~~ 876 (1091)
.....++|.++|++.++-. ++.|..|+..+++....+.........+++++ +|+++++... .+.+...+..++.
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCce
Confidence 3456899999998666543 68899999887776666655666788999999 7887776543 2345556655554
Q ss_pred eeeeecc--ccCCeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCC
Q 001367 877 VISKLEG--HSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 877 ~~~~l~~--h~~~V~~l~~spdg~~las~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 948 (1091)
....... -......+++.++|++.++.... +.+..++.+..... ...... .....++|+||++
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~--~~~~~~-------~~pnGia~s~dg~ 189 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQNI-------SVANGIALSTDEK 189 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEEE-------SSEEEEEECTTSS
T ss_pred eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE--EEeecc-------ceeeeeeeccccc
Confidence 4333321 12357789999999987764321 23444444432211 111111 1346799999999
Q ss_pred EEEEE--ecCeEEEEEcCCcc-eeee------eecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeeccc
Q 001367 949 RFLLV--HETHLAIYEAEELT-CLKQ------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1019 (1091)
Q Consensus 949 ~la~~--~d~~i~vwd~~~~~-~~~~------~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~ 1019 (1091)
.|.++ ..+.|..||+.... .... ...........+++.++|++.++....+.|.+|+ +.|+.+.++....
T Consensus 190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~ 268 (319)
T d2dg1a1 190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPG 268 (319)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTT
T ss_pred eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCC
Confidence 77654 56789999976432 1111 0111122356799999999888888899999999 5788887776332
Q ss_pred ccCCCCcccccceeEEEeCCCCCCeEEEEe
Q 001367 1020 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1049 (1091)
Q Consensus 1020 ~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~ 1049 (1091)
..+ .....+.+++|.|. ...+++..
T Consensus 269 ~~~----~~~~~~~~~~~~~~-~~~~~~t~ 293 (319)
T d2dg1a1 269 RDE----GHMLRSTHPQFIPG-TNQLIICS 293 (319)
T ss_dssp GGG----TCSCBCCEEEECTT-SCEEEEEE
T ss_pred cCC----CcCceeeeEEEeCC-CCEEEEEc
Confidence 211 12234457889884 44554444
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.58 E-value=3.3e-05 Score=80.53 Aligned_cols=232 Identities=8% Similarity=0.003 Sum_probs=145.2
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
.+..++|.++|+ |.++-...+.|..|+..+++.... +.........++|++||+++++..
T Consensus 41 ~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va~~ 100 (319)
T d2dg1a1 41 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVCYL 100 (319)
T ss_dssp CEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEEEC
T ss_pred CcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEEEec
Confidence 557899999998 777777889999999877654432 223456788999999999888764
Q ss_pred CC----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC------CCcEEEEeCCCCceeEEecCCC
Q 001367 416 SK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 416 ~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
.+ +.+...+..++.... ...-..-......+++.++|+ +.++... .+.+..++... +.+..+...-
T Consensus 101 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~ 176 (319)
T d2dg1a1 101 GDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNI 176 (319)
T ss_dssp TTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEE
T ss_pred CCCccceeEEEEcCCCceeee-eccCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEeccc-ceeEEEeecc
Confidence 32 234444444433211 100001123578899999998 5554322 23355555443 3333332233
Q ss_pred cceEEEeecccCCce-EEEEEecCCeEEEEecCCCCceee--------ecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 486 APVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
...+.++|++ +++ +.++-+..+.|..|+++....... ..........+++.++|+..++... .+.
T Consensus 177 ~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~----~g~ 250 (319)
T d2dg1a1 177 SVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----QGR 250 (319)
T ss_dssp SSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----TTE
T ss_pred ceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC----CCE
Confidence 3456788854 555 456667788999999875432211 1112224568999999997777653 567
Q ss_pred EEEEecCCceeeEEEeccc---ccccceEEEEEcCCCCEEEEEeC
Q 001367 557 LVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGD 598 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~s~ 598 (1091)
|.++|. .|+.+..+.... .+...+.+++|.+++..+++...
T Consensus 251 V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 251 VLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 999996 688777775432 11235789999998887776543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.55 E-value=6.6e-06 Score=84.52 Aligned_cols=236 Identities=11% Similarity=0.027 Sum_probs=127.0
Q ss_pred EEcCC--CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC-C
Q 001367 341 DFHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-K 417 (1091)
Q Consensus 341 ~fspd--g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d 417 (1091)
..||| |++++.+.. |.|.+.|+.+|+... +..+.+.+...+|||||++||.... +
T Consensus 5 ~~sPdi~G~~v~f~~~--~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC--DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEET--TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEEeC--CcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 46899 998776644 668888999887553 5567788999999999999997642 1
Q ss_pred -----CEEEEEEeeCCcccceeE---EEeccccCeeEEEEcCCCCceEEEEeeC------CCcEEEEeCCCCceeEEecC
Q 001367 418 -----HIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 418 -----~~i~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~ 483 (1091)
..|.+++..+++..+... ............+|+|||+ .++.... ...+...+...+......
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 138 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLN-- 138 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECC--
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEec--
Confidence 247777777765432110 0112223567889999999 4444321 223455555444432221
Q ss_pred CCcceEEEeecccCCceEEEEEecCC-----------eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDG-----------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
........+ ..++..++...... .......... ................++++ .++... +..
T Consensus 139 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~ 211 (281)
T d1k32a2 139 -LGPATHILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG-AFKKIVDMSTHVSSPVIVGH--RIYFIT-DID 211 (281)
T ss_dssp -SCSCSEEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT-EEEEEECCSSCCEEEEEETT--EEEEEE-CTT
T ss_pred -CCccceeee--cCCCeEEEeeccccceeeeeccCCcceeeeecccc-ceeeccCCccccceeeeecc--ccceec-ccc
Confidence 111111111 11222222221111 0111111111 11111122223333444444 333333 234
Q ss_pred CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001367 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1091)
+...|+++|+.+++..+...... .. ...|+|||+.|+.. .++.|+++|+.+++....
T Consensus 212 ~~~~l~~~d~~g~~~~~lt~~~~---~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 212 GFGQIYSTDLDGKDLRKHTSFTD---YY--PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp SSCEEEEEETTSCSCEECCCCCS---SC--EEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred cccceEEEeCCCCceEEeecCCC---cc--cccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 46679999998776544322211 22 34589999988764 467899999988876543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.28 E-value=0.00024 Score=72.60 Aligned_cols=216 Identities=9% Similarity=0.021 Sum_probs=141.6
Q ss_pred EEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee
Q 001367 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1091)
Q Consensus 446 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1091)
...|.+.... +..+--..+.|.-||..+++.. .+. ....+.++++. .++.++++ +.+ .+.++|..+++.....
T Consensus 22 gp~wd~~~~~-l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~--~dg~l~va-~~~-gl~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 22 GPTFDPASGT-AWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKI--SDSKQLIA-SDD-GLFLRDTATGVLTLHA 94 (295)
T ss_dssp EEEEETTTTE-EEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred CCeEECCCCE-EEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEe--cCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence 4568775553 3444446788999998887643 232 34456777764 45555554 444 5888998887655433
Q ss_pred cC----CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE-EeCCC
Q 001367 526 DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH 600 (1091)
Q Consensus 526 ~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg 600 (1091)
.. ....+..+.+.|+|++.++........+.-.+|.+..++........ ...+.++|+++++.++. -+..+
T Consensus 95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----~~~Ng~~~s~d~~~l~~~dt~~~ 170 (295)
T d2ghsa1 95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----SIPNSICFSPDGTTGYFVDTKVN 170 (295)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----SSEEEEEECTTSCEEEEEETTTC
T ss_pred eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----CCcceeeecCCCceEEEeecccc
Confidence 22 22357889999999987765433222333455666667665555443 35678999999987765 45678
Q ss_pred eEEEEECCC------CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeec
Q 001367 601 VIKIWDMNK------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN 673 (1091)
Q Consensus 601 ~i~iwd~~~------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 673 (1091)
.|+.++++. ++................+++..+|++.++....+.|..|+. .++.+..+......+++++|.
T Consensus 171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence 899888753 112222222222234578899999998888778899999994 677888887777778899985
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.18 E-value=0.00034 Score=71.44 Aligned_cols=223 Identities=14% Similarity=0.061 Sum_probs=144.7
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 417 (1091)
.+..|++.+..|..+--..+.|.-||..+++... | .....+.++++.++|.+++++ .+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~---------------~~~~~~~~i~~~~dg~l~va~-~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIAS-DD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEEE-TT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------E---------------ECCCCcEEEEEecCCCEEEEE-eC
Confidence 4567887555577776677899999999886432 1 123578899999999877754 45
Q ss_pred CEEEEEEeeCCcccceeEEEec--cccCeeEEEEcCCCCceEEEEeeC----CCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 418 HIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
.+.++|..+++... +..... ....++.+.+.|+|+ +.++... .+.-.+|.+..++....+.. -..-+.+
T Consensus 79 -gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~ 153 (295)
T d2ghsa1 79 -GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI 153 (295)
T ss_dssp -EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred -ccEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence 48999999876322 111111 123588999999998 4444321 23445666666655444432 2344667
Q ss_pred eecccCCce-EEEEEecCCeEEEEecCCCCc------ee--eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 492 CPHAKENIH-FIFSISVDGKIKAWLYDSLGA------RV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 492 ~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~------~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
++++ ++. ++++.+..+.|..++++.... .. ...........+++..+|+..++... .+.|..||.
T Consensus 154 ~~s~--d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp 227 (295)
T d2ghsa1 154 CFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT 227 (295)
T ss_dssp EECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT
T ss_pred eecC--CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC
Confidence 7754 444 556667788899888754321 11 22334456789999999987776543 456999995
Q ss_pred CCceeeEEEecccccccceEEEEEc-CCCCEEEEEe
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 597 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~s 597 (1091)
.|+.+..+.... ..+++++|. ++.+.|++.+
T Consensus 228 -~G~~~~~i~lP~---~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 228 -DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp -TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEE
T ss_pred -CCcEeeEecCCC---CceEEEEEeCCCCCEEEEEE
Confidence 677888887654 568999995 6777776543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.11 E-value=0.00011 Score=74.83 Aligned_cols=228 Identities=12% Similarity=0.100 Sum_probs=121.2
Q ss_pred ccccCCcccCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCC-----cEEEEEcCCCCceeeeceeEEecccccc
Q 001367 311 FQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG-----DTGLWDVNSGQKLFIRNFKVWDIGACSM 385 (1091)
Q Consensus 311 ~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 385 (1091)
|...+.-++.++.....+.|..+.+.+...+|||||++|+.+...++ .|.+++..+++......
T Consensus 17 f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~----------- 85 (281)
T d1k32a2 17 FVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY----------- 85 (281)
T ss_dssp EEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC-----------
T ss_pred EEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee-----------
Confidence 44444455556666667778888888999999999998766654332 47777877776543100
Q ss_pred ceeeeeecCCCccEEEEEECCCCCEEEEEECC------CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEE
Q 001367 386 LFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVI 459 (1091)
Q Consensus 386 ~~~~~~~~~h~~~V~~l~~spdg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~ 459 (1091)
...............+|+|||+.|+..... ..+...+..++.. ...+....... +.+++.. .++
T Consensus 86 --~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~-~~~ 155 (281)
T d1k32a2 86 --FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF------VPLNLGPATHI-LFADGRR-VIG 155 (281)
T ss_dssp --CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE------EECCSCSCSEE-EEETTEE-EEE
T ss_pred --cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee------EEecCCcccee-eecCCCe-EEE
Confidence 000011233456788999999999986432 2345555554421 11233333343 4444543 333
Q ss_pred EeeCCC-----------cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCC--eEEEEecCCCCceeeec
Q 001367 460 TCGDDK-----------TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYD 526 (1091)
Q Consensus 460 s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~ 526 (1091)
....+. ...+.....+....... .........+ .++ ..+.....++ .|.++|++.........
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~lt~ 231 (281)
T d1k32a2 156 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD-MSTHVSSPVI--VGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTS 231 (281)
T ss_dssp ESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC-CSSCCEEEEE--ETT-EEEEEECTTSSCEEEEEETTSCSCEECCC
T ss_pred eeccccceeeeeccCCcceeeeeccccceeeccC-Cccccceeee--ecc-ccceecccccccceEEEeCCCCceEEeec
Confidence 332221 11112211222222221 2222222222 222 2333333333 46667777666554333
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEE
Q 001367 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1091)
..... ...|+|||+.|+... ++.|+++|+.+++..+.
T Consensus 232 ~~~~~--~~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 232 FTDYY--PRHLNTDGRRILFSK-----GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp CCSSC--EEEEEESSSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred CCCcc--cccCcCCCCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence 32223 346899999988754 34599999998876544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.88 E-value=0.0017 Score=69.32 Aligned_cols=285 Identities=8% Similarity=-0.035 Sum_probs=142.8
Q ss_pred CcEEEEEcCCCceEEEEEcCC-----C------cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNV-----G------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~d-----g------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+...+...||+ +++.|+.+ + .+.+||..+++-..... ....|.......++
T Consensus 21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~ 83 (387)
T d1k3ia3 21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISM 83 (387)
T ss_dssp CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEE
T ss_pred ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC----------------CCCCcccceeEEEE
Confidence 344455567887 55666532 1 36789988876543111 02233333456688
Q ss_pred CCCCCEEEEEECC-CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC------CcEEEEeCCCCce
Q 001367 405 SPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSR 477 (1091)
Q Consensus 405 spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~~~~~ 477 (1091)
.+||++++.|+.+ ..+.+||..+..-.. ...+.. ...-..++..+||+ +++.++.+ ..+.+||..+.+-
T Consensus 84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~-~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQV-ARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSS-CCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCCcEEEeecCCCcceeEecCccCcccc-cccccc-cccccceeeecCCc--eeeeccccccccccceeeeecCCCCce
Confidence 9999999998755 589999998864321 111111 11234567778998 67777643 3689999887653
Q ss_pred eEEecC---------CCcce----EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC--------CCCcEEEEE
Q 001367 478 TYSFEG---------HGAPV----YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--------PGLGCTRMA 536 (1091)
Q Consensus 478 ~~~~~~---------~~~~v----~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~i~~~~ 536 (1091)
...-.. +...+ ....+ ...++..++.+..++.+.+++..+......... ....-.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (387)
T d1k3ia3 160 TSLPNAKVNPMLTADKQGLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 238 (387)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eecCCCcccccccccccceeeccceeEEE-EeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence 221110 00000 00001 122455666666666666666554432221100 000111222
Q ss_pred E-cCCCCEEEEEecCCCC----ceEEEEEec---CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC---------
Q 001367 537 Y-SANGRRLFSCGTSKEG----ESFLVEWNE---SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------- 599 (1091)
Q Consensus 537 ~-s~d~~~l~~~~~~~~~----~~~i~iwd~---~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d--------- 599 (1091)
+ ..+++.++.++..... .....+.+. ..................-.+....++++.++.|+.+
T Consensus 239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~ 318 (387)
T d1k3ia3 239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318 (387)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence 2 3466666666543211 111222222 1111111111111011223345556888988887743
Q ss_pred --CeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 600 --HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 600 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
.++.+||..+.+....-........-....+.+||+.++.|+.
T Consensus 319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1478899888765433222211111123456789999999874
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.87 E-value=0.006 Score=68.09 Aligned_cols=191 Identities=14% Similarity=0.118 Sum_probs=116.8
Q ss_pred CeEEEEEccCceeEEEecCCC------------------------------CCe-EEEEEcCCCCcEEEEEeC-------
Q 001367 822 GVISLYIVMTFKTILTIMPPS------------------------------PTA-TSLAFNPHDNNVIAIGMD------- 863 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~------------------------------~~i-~~l~~s~~~~~~la~g~~------- 863 (1091)
|.|.-+|..||+.+-++..-. ..+ ..+++.+ ...++..+..
T Consensus 178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~ 256 (560)
T d1kv9a2 178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNR 256 (560)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCH
T ss_pred ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCccccc
Confidence 679999999999987764210 011 2256666 4445444321
Q ss_pred ------------CCeEEEEeccCcceeeeeccccCCeE---------EEEECCCC---CEEEEEeCCCcEEEEEcCCCce
Q 001367 864 ------------DSTILIYNARSSEVISKLEGHSKRVT---------GLVFSDAL---NILVSSGGDAQIFVWDVDGWGI 919 (1091)
Q Consensus 864 ------------dg~i~iwd~~~~~~~~~l~~h~~~V~---------~l~~spdg---~~las~s~Dg~i~vwd~~~~~~ 919 (1091)
...|.-.|+.+|+.+..++.....+. -+.+..+| +.++.++.+|.+.++|-.+++.
T Consensus 257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~ 336 (560)
T d1kv9a2 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (560)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence 23677778999988765543222121 12222244 3577788999999999999875
Q ss_pred eeeeeeecc-----------------------------CCCcCCCCCceEEEEcCCCCEEEE-Ee---------------
Q 001367 920 QTCRSLQTP-----------------------------DGVMTLAPSETHIQFHKDQTRFLL-VH--------------- 954 (1091)
Q Consensus 920 ~~~~~~~~~-----------------------------~~~~~~~~~i~~l~fs~dg~~la~-~~--------------- 954 (1091)
......... .+... ...-...+++|+...+.+ ..
T Consensus 337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~G-g~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~ 415 (560)
T d1kv9a2 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG-AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (560)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC-SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred cccccccccccccccChhhccccccccccccccceeeeecccc-ccccccccccCCCCeeecccccccceeecccccccc
Confidence 432111000 00000 001135677888877775 21
Q ss_pred ---------------------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEE
Q 001367 955 ---------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1013 (1091)
Q Consensus 955 ---------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~ 1013 (1091)
.|.+.-||+.+++.+.+...+ .+..+-.++-.|.++++++.||.++.+|..+|+.+-
T Consensus 416 ~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW 493 (560)
T d1kv9a2 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (560)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeE
Confidence 146788999999988765433 222222345567788899999999999999999997
Q ss_pred Eee
Q 001367 1014 RIL 1016 (1091)
Q Consensus 1014 ~~~ 1016 (1091)
++.
T Consensus 494 ~~~ 496 (560)
T d1kv9a2 494 QFE 496 (560)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.84 E-value=0.0075 Score=67.33 Aligned_cols=201 Identities=10% Similarity=-0.003 Sum_probs=116.9
Q ss_pred CCCceEEEEeeCCCcEEEEeCC-CCceeEEecCCCcc----e-------EEEeecccCCceEEEEEecCCeEEEEecCCC
Q 001367 452 PCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAP----V-------YSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1091)
Q Consensus 452 d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~----v-------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 519 (1091)
+|. ++++.+.++.|...|.. +|+.+.++...... . ..+++. +..++.++.||.+.-.|.+++
T Consensus 62 ~g~--vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG 135 (571)
T d2ad6a1 62 GDM--MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTG 135 (571)
T ss_dssp TTE--EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTC
T ss_pred CCE--EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhh
Confidence 454 33333346788888874 79998887421110 0 112221 136778889999998899998
Q ss_pred CceeeecCCCC----cEEEEEEcCCCCEEEEEecCC--CCceEEEEEecCCceeeEEEeccccc----------------
Q 001367 520 GARVDYDAPGL----GCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ---------------- 577 (1091)
Q Consensus 520 ~~~~~~~~~~~----~i~~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~---------------- 577 (1091)
+.......... .+++.-.-.++.. +.+.... ...+.|+-+|..+|+.+-.+......
T Consensus 136 ~~~w~~~~~~~~~~~~~t~~p~v~~~~v-ivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~ 214 (571)
T d2ad6a1 136 KINWEVEVCDPKVGSTLTQAPFVAKDTV-LMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEE-EEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred hhhccccccccccccceeecCeEeCCeE-EEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccccccccccccc
Confidence 87765433211 1111111123333 3333211 13567999999999988766532100
Q ss_pred ------------------ccce-EEEEEcCCCCEEEEEeC----------------CCeEEEEECCCCeeEEEEeCCCCC
Q 001367 578 ------------------HNSV-SVVHFDTAKDQILAAGD----------------DHVIKIWDMNKVQLLTTIDAGGGL 622 (1091)
Q Consensus 578 ------------------~~~v-~~v~~~~~~~~l~~~s~----------------dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1091)
...+ ...++.++...++.+.. ...+.-.|.++|+.+-.++...+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D 294 (571)
T d2ad6a1 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred CcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcc
Confidence 0111 23456677777666543 346778899999998877753321
Q ss_pred -------CCCceEEEccCCC---EEEEEECCCeEEEEECCCCCeecc
Q 001367 623 -------PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDA 659 (1091)
Q Consensus 623 -------~~v~~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~ 659 (1091)
..........+++ .++.++.+|.++++|..+++.+..
T Consensus 295 ~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence 1111122223443 467788899999999999987743
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.76 E-value=0.024 Score=55.83 Aligned_cols=240 Identities=11% Similarity=-0.001 Sum_probs=148.3
Q ss_pred CEEEEEECCCEEEEEEeeCCccc--ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
.+|+.+.. +.|+-.+++..... .....+..+...+..++|.+..+. ++.+-..++.|+..++..+.....+.....
T Consensus 2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence 34554433 35666666543321 111223445556888999987774 344555678899888876655444444445
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
.+..+++.+.. +.+.++-...+.|.+.+++.................+++.|...+++...... ....|..-++....
T Consensus 80 ~p~~iAvD~~~-~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTN 157 (263)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCC
T ss_pred cccEEEEeccC-CeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC-CCcEEEEecCCCCC
Confidence 67888886543 34455666778999999887665554444445788999999888777554321 23346555665443
Q ss_pred eeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE-CCC
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NEN 644 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg 644 (1091)
........ ......+++.+.++.|+.+. ..+.|...+++.......+.... ....+++. +..|.... ..+
T Consensus 158 ~~~i~~~~---~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~--~~~lYwtd~~~~ 229 (263)
T d1npea_ 158 RRILAQDN---LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTDWKTN 229 (263)
T ss_dssp CEEEECTT---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEETTTT
T ss_pred ceeeeeec---ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE--CCEEEEEECCCC
Confidence 33322222 24678899998888887764 67889999997665544443322 23466665 44555444 568
Q ss_pred eEEEEECCCCCeeccc
Q 001367 645 RIKILETPESNSVDAA 660 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~ 660 (1091)
.|...+..+++....+
T Consensus 230 ~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 230 SVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCccceEE
Confidence 8888888877655443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.025 Score=55.85 Aligned_cols=239 Identities=9% Similarity=-0.049 Sum_probs=143.2
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc----eeEEecCCC
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSFEGHG 485 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~ 485 (1091)
+|+.+... .|+-.++.+.... .+......+.+++|.+..+. +..+-...+.|.-.++.... ....+....
T Consensus 3 fLl~s~~~-~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 3 YLFFTNRH-EVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp EEEEECBS-SEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECCC-eEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 34444333 3777787765422 23334556789999988774 33344456677766654321 112222333
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
..+..+++.+.. +.+.++-...+.|.+.+++.................+++.|...+|+..... ....|...++...
T Consensus 77 ~~p~glAvD~~~-~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs 153 (266)
T d1ijqa1 77 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (266)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceEEEeecc-ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC--CCcceeEeccCCC
Confidence 456677876543 3455566677889999998776666565555677899999977777655432 2345777777654
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE-ECC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANE 643 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~d 643 (1091)
......... ......+++.+.++.|+.+ ...+.|...++....................+++. +..|... ..+
T Consensus 154 ~~~~l~~~~---~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~ 228 (266)
T d1ijqa1 154 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 228 (266)
T ss_dssp CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred ceecccccc---cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCC
Confidence 443333222 2467889999988888776 45688999998765544444433332233456655 3445444 456
Q ss_pred CeEEEEECCCCCeeccccc
Q 001367 644 NRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 644 g~i~iwd~~~~~~~~~~~~ 662 (1091)
+.|+..+..++.....+..
T Consensus 229 ~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 229 EAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp TEEEEEETTTCCCCEEEEC
T ss_pred CeEEEEECCCCcceEEEEc
Confidence 7888888777755544443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.75 E-value=0.014 Score=65.24 Aligned_cols=203 Identities=10% Similarity=0.048 Sum_probs=118.1
Q ss_pred EEEEeeCCCcEEEEeC-CCCceeEEecCCCc----c-------eEEEeeccc--CCceEEEEEecCCeEEEEecCCCCce
Q 001367 457 SVITCGDDKTIKVWDA-VTGSRTYSFEGHGA----P-------VYSLCPHAK--ENIHFIFSISVDGKIKAWLYDSLGAR 522 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~----~-------v~~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~ 522 (1091)
++++.+.++.+...|. ++|+.+.++..... . -+.+++... .....++.++.|+.|.-.|.++++..
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~ 144 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence 3444555567777776 57888877642111 0 122333222 12346888999999999999998887
Q ss_pred eeecCCCCcE-EEEEEcC--CCCEEEEEecCC--CCceEEEEEecCCceeeEEEecccc---------------------
Q 001367 523 VDYDAPGLGC-TRMAYSA--NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL--------------------- 576 (1091)
Q Consensus 523 ~~~~~~~~~i-~~~~~s~--d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 576 (1091)
..+....... ..+.-+| -+..++.+.... ...+.|+-+|..+|+.+-++.....
T Consensus 145 w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~ 224 (596)
T d1w6sa_ 145 WKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKG 224 (596)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTT
T ss_pred ccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccc
Confidence 7664322110 0111111 133344443221 2357899999999999877643210
Q ss_pred --------------cccceEEEEEcCCCCEEEEEeC----------------CCeEEEEECCCCeeEEEEeCCCCCC---
Q 001367 577 --------------QHNSVSVVHFDTAKDQILAAGD----------------DHVIKIWDMNKVQLLTTIDAGGGLP--- 623 (1091)
Q Consensus 577 --------------~~~~v~~v~~~~~~~~l~~~s~----------------dg~i~iwd~~~~~~~~~~~~~~~~~--- 623 (1091)
....-...++.+....++.+.. ...|.-.|+++|+.+-.++...+..
T Consensus 225 ~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~ 304 (596)
T d1w6sa_ 225 LGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDY 304 (596)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCC
Confidence 0011223456677777776543 2347788999999988776432210
Q ss_pred ---CCceEE--EccCC---CEEEEEECCCeEEEEECCCCCeecc
Q 001367 624 ---ENPRIC--FNKNG---TLLAVIANENRIKILETPESNSVDA 659 (1091)
Q Consensus 624 ---~v~~v~--~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 659 (1091)
....+. ...+| +.++....+|.++++|..+++.+..
T Consensus 305 d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~ 348 (596)
T d1w6sa_ 305 AGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (596)
T ss_dssp CCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence 111111 12344 3677788899999999999987754
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.71 E-value=0.0052 Score=68.90 Aligned_cols=382 Identities=12% Similarity=0.083 Sum_probs=190.4
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCc----------ce-EEEeecccCCceEEEEEecCCeEEEEecCCCCceeee
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA----------PV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1091)
.++.++.++.|.-+|.++|+.+.++..... .+ ..+.+. ...++.++.|+.+.-.|..+++.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW----KGKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE----CCcEEEEecccceeeeccccccceecc
Confidence 356677788999999999999988743211 01 111111 125777888888888888888877654
Q ss_pred cCCCCcE--EEEEEcC--CCCEEEEEec--CCCCceEEEEEecCCceeeEEEeccccc----------------------
Q 001367 526 DAPGLGC--TRMAYSA--NGRRLFSCGT--SKEGESFLVEWNESEGAIKRTYQGLQLQ---------------------- 577 (1091)
Q Consensus 526 ~~~~~~i--~~~~~s~--d~~~l~~~~~--~~~~~~~i~iwd~~~~~~~~~~~~~~~~---------------------- 577 (1091)
....... ..+.-.| -+..++++.. .....+.|+-+|..+|+.+-.+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~ 234 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (573)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence 3221110 0111111 1233444332 1223567999999999988776432100
Q ss_pred ------ccce-EEEEEcCCCCEEEEEeC-------------------CCeEEEEECCCCeeEEEEeCCCCC-------CC
Q 001367 578 ------HNSV-SVVHFDTAKDQILAAGD-------------------DHVIKIWDMNKVQLLTTIDAGGGL-------PE 624 (1091)
Q Consensus 578 ------~~~v-~~v~~~~~~~~l~~~s~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~ 624 (1091)
...+ ...++.++...++.+.. ...|.-.|.++++..-..+...+. ..
T Consensus 235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~ 314 (573)
T d1kb0a2 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (573)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence 0111 13456666666665321 124667788888887666543221 01
Q ss_pred CceEEEccCC---CEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccc
Q 001367 625 NPRICFNKNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEI 701 (1091)
Q Consensus 625 v~~v~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~ 701 (1091)
........++ ..++.++.+|.++++|..+++.+............ .+. ..+..+.
T Consensus 315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~-~~~---------------------~~~~~~~ 372 (573)
T d1kb0a2 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS-GYD---------------------KHGKPIG 372 (573)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE-EEC---------------------TTSCEEE
T ss_pred eeecceecCCCceeeeeeccccceeEEecccccccccccccccccccc-ccc---------------------cccceee
Confidence 1112222233 35777888999999999999877654432211100 000 0000000
Q ss_pred ccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCcc
Q 001367 702 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 781 (1091)
Q Consensus 702 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 781 (1091)
.... ..........+.......-...+++|+...++....+....++............
T Consensus 373 ~~~~------------~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~--------- 431 (573)
T d1kb0a2 373 IAAA------------RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGP--------- 431 (573)
T ss_dssp CGGG------------GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCT---------
T ss_pred eeec------------cccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCC---------
Confidence 0000 0000000011110011111245788888877777766544444322111000000
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCe-EEEEEcCCCCcEEEE
Q 001367 782 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAI 860 (1091)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~ 860 (1091)
..+..+. ........ ++.-.....-|.+.-||+.+++.+-+........ -.++. .+.+|++
T Consensus 432 ~~~~~g~------------~~~~~~~~---~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lst---agglVF~ 493 (573)
T d1kb0a2 432 GKPQSGT------------GWNTAKFF---NAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT---AGNVVFQ 493 (573)
T ss_dssp TSTTGGG------------TCCCCEEE---CSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEEE
T ss_pred Ccccccc------------cccccccc---ccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEE---cCCEEEE
Confidence 0000000 00000000 0000000012578889999999887765332211 12333 4557788
Q ss_pred EeCCCeEEEEeccCcceeeeeccccCCe-EEEEECCCCC-EEEEE
Q 001367 861 GMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSS 903 (1091)
Q Consensus 861 g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~-~las~ 903 (1091)
|+.||.++.+|..+|+.+..+.-..+.. .-+.|..||+ |++..
T Consensus 494 G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~ 538 (573)
T d1kb0a2 494 GTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVA 538 (573)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 9999999999999999997765322211 1145556786 44433
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.68 E-value=0.0066 Score=65.44 Aligned_cols=249 Identities=12% Similarity=0.062 Sum_probs=136.5
Q ss_pred CcEEEEEcCCCceEEEEEcCCC----cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.+..+++||||++++.+-+.+| .+++.|+.+|+.+.. . +. ......++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~-----------------i~--~~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------LE--RVKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------EE--EECSCCEEECTTSSEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-c-----------------cc--cccccceEEcCCCCEE
Confidence 4456788999997766655554 599999999987642 1 11 1122468999999988
Q ss_pred EEEECC----------------CEEEEEEeeCCcccceeEEEeccc--cCeeEEEEcCCCCceEEEEee-CCCcEEEE--
Q 001367 412 GVAYSK----------------HIVQLYAYHGGSDARQQLEIDAHV--GNVNDLAFSAPCKQISVITCG-DDKTIKVW-- 470 (1091)
Q Consensus 412 as~~~d----------------~~i~iwd~~~~~~~~~~~~~~~h~--~~v~~~~~s~d~~~~~l~s~~-~d~~i~iw-- 470 (1091)
.....+ ..|..|.+.+...-. ...+.... ..+..+..+.|++++++.+.. .+....+|
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 765432 257777776654322 11233332 346677889999963332332 23344444
Q ss_pred eCCCCce--------eEEecCCCcceEEEeecccCCceEEEEEe---cCCeEEEEecCCCCce--e-eecCCCCcEEEEE
Q 001367 471 DAVTGSR--------TYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGAR--V-DYDAPGLGCTRMA 536 (1091)
Q Consensus 471 d~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~--~-~~~~~~~~i~~~~ 536 (1091)
|+..... ...+.........+.. .++.+++... .++.|...++...... . .+..+...+..-.
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~ 341 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN---EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE---ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred eCCCcccccccccceeEeecccccceEEEec---CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence 4432211 1122222222222211 1222333322 2356666666654332 2 2333444454444
Q ss_pred EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE--e--CCCeEEEEECCCCee
Q 001367 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--G--DDHVIKIWDMNKVQL 612 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~--s--~dg~i~iwd~~~~~~ 612 (1091)
++..+.+|+..... ++...|++++..++.....+.... +.+..+...++...+... | .-.+++-+|+.+++.
T Consensus 342 ~~~~~~~lvl~~~~-~~~~~l~v~~~~~~~~~~~~~~~~---~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 342 ACVRSNFLVLCYLH-DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTEEEEEEEE-TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEECCEEEEEEEc-CCEeEEEEEECCCCcEEEecCCCC---ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 55555666655432 357789999998887765544333 556655555665554432 2 347788999988754
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.64 E-value=0.0013 Score=67.42 Aligned_cols=190 Identities=11% Similarity=0.074 Sum_probs=122.8
Q ss_pred CCCCEEEEEe--CCeEEEEEccCceeEEEecCC-CCCeEEEEEcCC-CCcEEEEEeCC------------------CeEE
Q 001367 811 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFNPH-DNNVIAIGMDD------------------STIL 868 (1091)
Q Consensus 811 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~-~~~~la~g~~d------------------g~i~ 868 (1091)
+||+++.+.. ++.|.+.|+.+.++.+....+ ...+..+...++ ...+++.++.+ +.+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 4899999998 688999999999987655433 345666666441 34466666553 2367
Q ss_pred EEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCC---------------cEEEEEc-------------------
Q 001367 869 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDV------------------- 914 (1091)
Q Consensus 869 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg---------------~i~vwd~------------------- 914 (1091)
++|..+.+...++.- .+....+++++||+++++.+.+. .+.+++.
T Consensus 177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~ 255 (459)
T d1fwxa2 177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 255 (459)
T ss_dssp EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence 788888877665542 23466799999999999877542 1333433
Q ss_pred ----CCCc-eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcceee-------e---eecCCc
Q 001367 915 ----DGWG-IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLK-------Q---WFPISS 977 (1091)
Q Consensus 915 ----~~~~-~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~~~~-------~---~~~~h~ 977 (1091)
.... ......+... .....+.++|||++++++ -+.++.|+|++...... . -.....
T Consensus 256 VVD~~~~~~~~v~~yIPVp-------KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg 328 (459)
T d1fwxa2 256 VVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 328 (459)
T ss_dssp EEECSGG--CSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred eecccccCCcceeEEEecC-------CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence 2100 0001112222 234578999999999995 57899999987532221 0 011124
Q ss_pred cCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 978 VPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 978 ~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
-.-..-+|..+|.-..|---|..|.-|++..
T Consensus 329 lgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 329 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cCccccccCCCceEEEEeeccceEEEEecch
Confidence 4556778888886666666899999999854
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.63 E-value=0.076 Score=59.10 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=44.5
Q ss_pred CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 956 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
|.|.-||..+|+.+.+...+ .+..+-.++-.|.++++|+.||.++.+|..+|+.+-++.
T Consensus 453 G~l~A~D~~TG~~~W~~~~~--~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~ 511 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (596)
T ss_dssp EEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCceecccCCC--CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence 57888999999887664332 222333345567888899999999999999999997776
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.61 E-value=0.092 Score=58.44 Aligned_cols=203 Identities=12% Similarity=0.053 Sum_probs=116.1
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCC--------cce-EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 527 (1091)
.|+.++.++.|.-.|.++|+.+.++.... ..+ ..+++ .+..++.++.++.+.-.|..+++.......
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~----~~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE----eCCceEEecCCCeEEEecccccceeeeecc
Confidence 46677888999999999999998874211 001 11222 123577788899988889888877654322
Q ss_pred CCCc-------EEEEEE-cCCCCEEEEEecCC---CCceEEEEEecCCceeeEEEeccccc-------------------
Q 001367 528 PGLG-------CTRMAY-SANGRRLFSCGTSK---EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 577 (1091)
Q Consensus 528 ~~~~-------i~~~~~-s~d~~~l~~~~~~~---~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 577 (1091)
.... ...+.- -..+..++..+... ...+.|.-+|..+|+.+-.+......
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 1110 000111 11233333332211 23556888999999887665432200
Q ss_pred ------------------ccc-eEEEEEcCCCCEEEEEeC------------------------CCeEEEEECCCCeeEE
Q 001367 578 ------------------HNS-VSVVHFDTAKDQILAAGD------------------------DHVIKIWDMNKVQLLT 614 (1091)
Q Consensus 578 ------------------~~~-v~~v~~~~~~~~l~~~s~------------------------dg~i~iwd~~~~~~~~ 614 (1091)
... -..+++.+....++.+.. ...+.-.|.++|+..-
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 011 123567777777776531 2346777889999887
Q ss_pred EEeCCCCCCCC-------ceEEEc-cCC---CEEEEEECCCeEEEEECCCCCeecccccc
Q 001367 615 TIDAGGGLPEN-------PRICFN-KNG---TLLAVIANENRIKILETPESNSVDAAGVL 663 (1091)
Q Consensus 615 ~~~~~~~~~~v-------~~v~~s-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 663 (1091)
.++...+.... ..+.+. .++ ..++..+.++.++++|..+++.+......
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~ 365 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCccccccccc
Confidence 77654331110 111111 133 35666788999999999999876654433
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.61 E-value=0.04 Score=54.13 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=138.8
Q ss_pred CCCccEEEEEECCCCCEEEEEE-CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
.+...+..++|.+..+.|.... .++.|+..++.++.... .+......+..+++..-+.. +.++-...+.|.+.++
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~ 108 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKM 108 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEec
Confidence 3445688899998887777664 55778888887654322 23333356888999876664 3345556779999998
Q ss_pred CCCceeEEecCCCcceEEEeecccCCceEEEEEecCC--eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
........+.........++++|. .+.++.+-...+ .|..-+++...........-....++++.+.++.|..+..
T Consensus 109 dg~~~~~l~~~~l~~p~~l~vdp~-~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~- 186 (263)
T d1npea_ 109 DGTQRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA- 186 (263)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET-
T ss_pred CCceEEEEecccccCCcEEEEecc-cCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC-
Confidence 765543333333456788888665 334444433323 3444455554444444444456679999998888876642
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
+.+.|...++........+.+.. ....+++. +.+|+... ..+.|...|..+++.+..+..... .....++
T Consensus 187 --~~~~I~~~~~~g~~~~~v~~~~~----~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~ 257 (263)
T d1npea_ 187 --GTHRAECLNPAQPGRRKVLEGLQ----YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGIT 257 (263)
T ss_dssp --TTTEEEEEETTEEEEEEEEECCC----SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEE
T ss_pred --CCCEEEEEECCCCCeEEEECCCC----CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEE
Confidence 25678888887665544444433 34567765 45666554 678899999999988776643322 2334554
Q ss_pred Ecc
Q 001367 630 FNK 632 (1091)
Q Consensus 630 ~s~ 632 (1091)
..+
T Consensus 258 v~~ 260 (263)
T d1npea_ 258 IAL 260 (263)
T ss_dssp EEC
T ss_pred EeC
Confidence 433
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.56 E-value=0.041 Score=53.10 Aligned_cols=230 Identities=13% Similarity=0.120 Sum_probs=143.8
Q ss_pred EEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCC
Q 001367 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1091)
Q Consensus 339 ~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 418 (1091)
+.-.+|..+ ++|.-+ ..++.|+|+++.+.+.... ...+|..=.|-.+.. |+-.+ +.
T Consensus 67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~~~-L~lVT-~t 122 (327)
T d1utca2 67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLNT-VALVT-DN 122 (327)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEESSSSE-EEEEC-SS
T ss_pred hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEE--------------------cCCCcEEEEecCCCE-EEEEc-CC
Confidence 344578887 555544 4689999999998887533 235777777876554 44443 45
Q ss_pred EEEEEEeeCCcccceeEEEecccc----CeeEEEEcCCCCceEEEEe-e-----CCCcEEEEeCCCCceeEEecCCCcce
Q 001367 419 IVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITC-G-----DDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~~~l~s~-~-----~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
.|+=|++++... +...+..|.. .|..-..+++.+++ +++| + -.|.+.+|..+. +.-+.++||.+.-
T Consensus 123 aVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F 198 (327)
T d1utca2 123 AVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF 198 (327)
T ss_dssp EEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEE
T ss_pred ceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEecc-CcCccccceeeee
Confidence 699999965442 3334555543 57777788999963 3333 1 236788998554 4567788888777
Q ss_pred EEEeecccCCceEEEE-Ee---cCCeEEEEecCCCCc---ee-----eec----CCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 489 YSLCPHAKENIHFIFS-IS---VDGKIKAWLYDSLGA---RV-----DYD----APGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s-~~---~dg~i~iwd~~~~~~---~~-----~~~----~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
..+.+........+++ +. ..+.+++-++..... .. .+. ...+-..++..|+.-..+...+.
T Consensus 199 ~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK--- 275 (327)
T d1utca2 199 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--- 275 (327)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET---
T ss_pred EEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec---
Confidence 7666543333333333 22 236788888865321 11 111 11233457778887777777764
Q ss_pred CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEE
Q 001367 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~ 603 (1091)
.|.+++||+.++.++..-+-.. ..|...+-..+..-+++...+|.|.
T Consensus 276 -~G~i~lyDleTgt~i~~nRIs~---~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 276 -YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp -TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTSEEE
T ss_pred -CcEEEEEEcccccEEEEeecCC---CceEEeccCCCCceEEEECCCCeEE
Confidence 6789999999999887665544 5666555555555666666666554
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.54 E-value=0.028 Score=62.45 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=51.6
Q ss_pred CeEEEEEccCceeEEEecCCCCCe-EEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCC-eEEEEECCCCC-
Q 001367 822 GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALN- 898 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~- 898 (1091)
|.+.-||+.+++.+-+........ -.++- .+.++++|+.||.++-+|..+|+.+.++.-..+. -.-+.+..||+
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T---agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq 514 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST---AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEE---CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 467889999999887654322111 12222 3447778999999999999999999776542221 11245556785
Q ss_pred EEEEEe
Q 001367 899 ILVSSG 904 (1091)
Q Consensus 899 ~las~s 904 (1091)
||+..+
T Consensus 515 yv~v~a 520 (560)
T d1kv9a2 515 YVAIMA 520 (560)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.54 E-value=0.008 Score=61.60 Aligned_cols=198 Identities=12% Similarity=0.124 Sum_probs=122.5
Q ss_pred EEEEcC---CCCceEEEEeeCCCcEEEEeCCCCceeEEecC-CCcceEEEeecccCCceEEEEEecCC------------
Q 001367 446 DLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDG------------ 509 (1091)
Q Consensus 446 ~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg------------ 509 (1091)
.+.+.. ||++ +++.-..+.+|.+-|+++.++.+.... ....+..+.....++..+++..+.+.
T Consensus 89 ~~S~TdGtyDGry-lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d 167 (459)
T d1fwxa2 89 HMSFTEGKYDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 167 (459)
T ss_dssp EEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccccCCccceeE-EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence 455554 7885 566667889999999999988664432 23345556665566667888776633
Q ss_pred ------eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC-----------CceEEEEEec----------
Q 001367 510 ------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-----------GESFLVEWNE---------- 562 (1091)
Q Consensus 510 ------~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~-----------~~~~i~iwd~---------- 562 (1091)
.+..+|.++.+........ .....+.++++|+++++.+.+.+ ....+.+++.
T Consensus 168 ~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 168 VANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp GG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred hhhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence 2566777776665544432 24557899999999998764321 1122333332
Q ss_pred -------------CCc---eeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe------------eE
Q 001367 563 -------------SEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ------------LL 613 (1091)
Q Consensus 563 -------------~~~---~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~------------~~ 613 (1091)
... ..++.+.. ......+.++|||+++++++ .+.++.++|+++-. ..
T Consensus 247 k~~eingV~VVD~~~~~~~~v~~yIPV----pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~ 322 (459)
T d1fwxa2 247 DYQELNGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 322 (459)
T ss_dssp CSEEETTEEEEECSGG--CSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred CcEEeCCceeecccccCCcceeEEEec----CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence 211 11111111 13456688999999998865 68899999986421 11
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
..... +. .-...+|+..|.-..+.--|..|.-|++.
T Consensus 323 ~e~el--gl-gPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 323 AEPEL--GL-GPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp ECCBC--CS-CEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred eeccc--Cc-CccccccCCCceEEEEeeccceEEEEecc
Confidence 11111 11 23566888888655555679999999985
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.51 E-value=0.013 Score=62.09 Aligned_cols=122 Identities=11% Similarity=0.179 Sum_probs=76.9
Q ss_pred EEEEEcCCCCEEEEEecCCC-------CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC-CeEEE
Q 001367 533 TRMAYSANGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-HVIKI 604 (1091)
Q Consensus 533 ~~~~~s~d~~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d-g~i~i 604 (1091)
...+...+|+.++.++...+ ....+.+||..+++..........+.......++.+++..++.|+.+ ..+.+
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~ 102 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence 34445567787777764221 12247799999876543322222111223456788999888887654 68999
Q ss_pred EECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC------CeEEEEECCCCC
Q 001367 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETPESN 655 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~~ 655 (1091)
||..+......-..... ..-..++..+||++++.++.+ ..+.+||..+..
T Consensus 103 yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 103 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 99988776543322222 123567788899999988753 468899988764
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.42 E-value=0.024 Score=63.05 Aligned_cols=192 Identities=9% Similarity=0.060 Sum_probs=114.9
Q ss_pred CCeEEEEEccCceeEEEecCCC-------------------------------------CCe-EEEEEcCCCCcEEEEEe
Q 001367 821 GGVISLYIVMTFKTILTIMPPS-------------------------------------PTA-TSLAFNPHDNNVIAIGM 862 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~~~~~~~-------------------------------------~~i-~~l~~s~~~~~~la~g~ 862 (1091)
.|.|+-+|+.||+.+.++.... ..+ ...++.+ ...++..+.
T Consensus 175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~t 253 (571)
T d2ad6a1 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGS 253 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch-hcCeeeeec
Confidence 5789999999999987654211 111 2345666 444555444
Q ss_pred C----------------CCeEEEEeccCcceeeeeccccCCe---------EEEEECCCCC---EEEEEeCCCcEEEEEc
Q 001367 863 D----------------DSTILIYNARSSEVISKLEGHSKRV---------TGLVFSDALN---ILVSSGGDAQIFVWDV 914 (1091)
Q Consensus 863 ~----------------dg~i~iwd~~~~~~~~~l~~h~~~V---------~~l~~spdg~---~las~s~Dg~i~vwd~ 914 (1091)
. ...+.-.|..+|+.+..++.+...+ ....+..+++ .++..+.+|.+.+.|.
T Consensus 254 g~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr 333 (571)
T d2ad6a1 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNR 333 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred ccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEec
Confidence 3 2467888999999887665422111 1122223443 4677889999999999
Q ss_pred CCCceeeeeeeec------------------c--------------CCCcCCCCCceEEEEcCCCCEEEEE-ec------
Q 001367 915 DGWGIQTCRSLQT------------------P--------------DGVMTLAPSETHIQFHKDQTRFLLV-HE------ 955 (1091)
Q Consensus 915 ~~~~~~~~~~~~~------------------~--------------~~~~~~~~~i~~l~fs~dg~~la~~-~d------ 955 (1091)
++++......... . .+.... ..-...+++|+...+.+. .+
T Consensus 334 ~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg-~~w~~~a~dP~~~~~yv~~~~~~~~~~ 412 (571)
T d2ad6a1 334 ENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGF-HNQGVDSYDPESRTLYAGLNHICMDWE 412 (571)
T ss_dssp TTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCS-SCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccc-cccccceECCCCceEEEeccccccccc
Confidence 9887542111000 0 000000 001236778887776541 11
Q ss_pred -------------------------------CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEE
Q 001367 956 -------------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 1004 (1091)
Q Consensus 956 -------------------------------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iw 1004 (1091)
|.|.-+|+.+|+.+.+...+. +..+-..+-.|.++++++.||.++.+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~--~~~~g~l~TagglVf~G~~dg~l~A~ 490 (571)
T d2ad6a1 413 PFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKAL 490 (571)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred cccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCC--CCCcceeEecCCEEEEECCCCeEEEE
Confidence 357778888888876654332 11111223356688889999999999
Q ss_pred eCCCCceEEEee
Q 001367 1005 EASNLEVQCRIL 1016 (1091)
Q Consensus 1005 d~~~~~~~~~~~ 1016 (1091)
|.++|+.+-++.
T Consensus 491 Da~tGe~lW~~~ 502 (571)
T d2ad6a1 491 DNKDGKELWNFK 502 (571)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCcEEEEEE
Confidence 999999997665
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.33 E-value=0.2 Score=55.63 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=45.5
Q ss_pred CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 956 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
|.+.-+|+.+|+.+.+...++ ++.+-..+..|.++++|+.||.++.+|.++|+.+-++.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~ 524 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence 568889999999887755433 22222345677888899999999999999999997766
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.095 Score=51.43 Aligned_cols=241 Identities=9% Similarity=-0.039 Sum_probs=143.7
Q ss_pred eEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE-CCCEEEEEEee
Q 001367 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH 426 (1091)
Q Consensus 348 ~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~ 426 (1091)
+||++-. ..|+-.++.+..... +......+.+++|.+..++|.-.. ..+.|.--++.
T Consensus 3 fLl~s~~--~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~ 60 (266)
T d1ijqa1 3 YLFFTNR--HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60 (266)
T ss_dssp EEEEECB--SSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred EEEEECC--CeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEec
Confidence 3445433 458888887654332 222445678999999888777664 45666666654
Q ss_pred CCccccee-EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEE
Q 001367 427 GGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505 (1091)
Q Consensus 427 ~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 505 (1091)
........ ..+......+..+++.+.++. +.++-...+.|.+.++........+.........+++++. ++.++.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~ 138 (266)
T d1ijqa1 61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTD 138 (266)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEE
T ss_pred CCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEec
Confidence 32211111 122233345778898877775 3445566778999998876655555555566788888654 34444443
Q ss_pred -ecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEE
Q 001367 506 -SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV 584 (1091)
Q Consensus 506 -~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v 584 (1091)
+..+.|...+++...........-....++++.+.++.|..+.. ..+.|...++............. .......+
T Consensus 139 ~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~-~~~~p~~l 214 (266)
T d1ijqa1 139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEK-RLAHPFSL 214 (266)
T ss_dssp CSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTT-TTSSEEEE
T ss_pred cCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCC-cccccEEE
Confidence 23456766777655554444444456789999998888887643 25578888886654433333322 11335566
Q ss_pred EEcCCCCEEEEE-eCCCeEEEEECCCCeeEEEEeC
Q 001367 585 HFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 585 ~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
++. +.+|+.+ ..++.|...+..++.....+..
T Consensus 215 av~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 215 AVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp EEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence 665 3455555 4677888888877776665543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.30 E-value=0.052 Score=60.37 Aligned_cols=186 Identities=12% Similarity=0.049 Sum_probs=100.9
Q ss_pred eEEEEEccCceeEEEecCCCC---------CeEEEEEcC--CCCcEEEEEeCCCeEEEEeccCcceeeeeccccC-----
Q 001367 823 VISLYIVMTFKTILTIMPPSP---------TATSLAFNP--HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----- 886 (1091)
Q Consensus 823 ~i~iwd~~~~~~~~~~~~~~~---------~i~~l~~s~--~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~----- 886 (1091)
.|...|+.+++....++.... ......... .....++.++.+|.++++|..+|+.+........
T Consensus 284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~ 363 (573)
T d1kb0a2 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (573)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence 455666777776655432211 111122222 1124677888999999999999987643321100
Q ss_pred ------------------------------CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCC
Q 001367 887 ------------------------------RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 936 (1091)
Q Consensus 887 ------------------------------~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 936 (1091)
.-..++++|+..++.....+....++.....+... ...+......
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~ 438 (573)
T d1kb0a2 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ-----AGPGKPQSGT 438 (573)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC-----CCTTSTTGGG
T ss_pred cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeeccccccccc-----CCCCcccccc
Confidence 01124677777777776666655555554422110 0001000000
Q ss_pred CceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 937 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 937 ~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
......+ +++.-.....-|.+.-||+.+|+.+.+...+. +...=..+-.|.+|++|+.||.++.+|..+|+.+-++.
T Consensus 439 ~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~--p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~ 515 (573)
T d1kb0a2 439 GWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS--PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (573)
T ss_dssp TCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCC--CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence 0000000 00000000122578889999999887654332 22222345578889999999999999999999997776
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.24 E-value=0.036 Score=59.38 Aligned_cols=247 Identities=10% Similarity=0.026 Sum_probs=128.3
Q ss_pred CCccEEEEEECCCCCEEEEEE-CC----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC------
Q 001367 395 PGVSVNRVVWSPDGSLLGVAY-SK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------ 463 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~-~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~------ 463 (1091)
+.-.+..+++|||++++|.+- .. ..+++.|+.+|+.+.. .+.. .....++|++|++. |+....
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~~--~~~~~~~W~~D~~~--~~Y~~~~~~~~~ 196 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGKG--MFYNAYPQQDGK 196 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSSE--EEEEECCCCSSC
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--cccc--ccccceEEcCCCCE--EEEEEeccccCc
Confidence 444556678999999999762 22 3799999999975432 1221 12357899999994 433221
Q ss_pred ----------CCcEEEEeCCCCce--eEEecCCCcc--eEEEeecccCCceEEEEEec---CCeEEEE--ecCCCCce--
Q 001367 464 ----------DKTIKVWDAVTGSR--TYSFEGHGAP--VYSLCPHAKENIHFIFSISV---DGKIKAW--LYDSLGAR-- 522 (1091)
Q Consensus 464 ----------d~~i~iwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~---dg~i~iw--d~~~~~~~-- 522 (1091)
...|..|.+.+... ...+.....+ +..+.. +.++++++.... ++...+| ++......
T Consensus 197 ~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~--s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~ 274 (430)
T d1qfma1 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (430)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccCCcceEEEEECCCCccccccccccccCCceEEeeec--cCCcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence 23577777776533 2333333333 333333 556667654332 3334444 43322111
Q ss_pred ------eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee--eEEEecccccccceEEEEEcCCCCEEE
Q 001367 523 ------VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1091)
Q Consensus 523 ------~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~ 594 (1091)
........... ... .+|..+...+.....++.|...++..... ...+-.+. ...+..-.+...+.+|+
T Consensus 275 ~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~--~~~~~~~~~~~~~~~lv 350 (430)
T d1qfma1 275 GILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH--EKDVLEWVACVRSNFLV 350 (430)
T ss_dssp SSCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCC--SSCEEEEEEEETTTEEE
T ss_pred cccceeEeecccccceE-EEe-cCCceeecccCcccccceeEEecCCCCccccceEEeccc--CcceeeeEEEEECCEEE
Confidence 11111111222 222 23444444443333456677777765432 12222222 13344334444455666
Q ss_pred EE-eCCC--eEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC----CCeEEEEECCCCC
Q 001367 595 AA-GDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1091)
Q Consensus 595 ~~-s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1091)
.. ..++ .|++++..++........... .+..+...++...+..... -.+++-+|+.+++
T Consensus 351 l~~~~~~~~~l~v~~~~~~~~~~~~~~~~~--sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 351 LCYLHDVKNTLQLHDLATGALLKIFPLEVG--SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECCCSS--EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEcCCEeEEEEEECCCCcEEEecCCCCc--eEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 54 3444 588899988877655443322 3444444455554444333 2778888888774
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.97 E-value=0.18 Score=48.52 Aligned_cols=257 Identities=11% Similarity=0.134 Sum_probs=143.3
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
...+.+.|+..+....+..- ...+.-.+|..+.++.-+ ..++.++|+++.+.++....... |.--.|-.+
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi------~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~---VvfWkWis~ 113 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWISL 113 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEESSS
T ss_pred CceEEEEECCCCCcceeccc------chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC---cEEEEecCC
Confidence 56788999876553222211 122445689887777654 56899999999999999887654 555566554
Q ss_pred CCEEEEEECCCeEEEEECCCCC-eecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 634 GTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 634 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
+.|+..+. ..|+-|+++... +...+..|..
T Consensus 114 -~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~----------------------------------------------- 144 (327)
T d1utca2 114 -NTVALVTD-NAVYHWSMEGESQPVKMFDRHSS----------------------------------------------- 144 (327)
T ss_dssp -SEEEEECS-SEEEEEESSSSCCCEEEEECCGG-----------------------------------------------
T ss_pred -CEEEEEcC-CceEEEcccCCCCchhhhhhccc-----------------------------------------------
Confidence 35555554 579999985321 1111111000
Q ss_pred cccccCCcccceeecCCccccccEEEEEEecCCCeEEEeec-------CceEEEeecCCcccccccceeeccCCccccCC
Q 001367 713 KPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-------NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 785 (1091)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1091)
.....|-.-..+++.++++..+- .|.+.+|........ +-
T Consensus 145 ------------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ---------------~i 191 (327)
T d1utca2 145 ------------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------------PI 191 (327)
T ss_dssp ------------------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE---------------EE
T ss_pred ------------------ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc---------------cc
Confidence 01234444555555555544331 266677765543220 01
Q ss_pred CCC--ceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCce---e-----EEEe-cC---CCCCeEEEEEc
Q 001367 786 HGP--QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---T-----ILTI-MP---PSPTATSLAFN 851 (1091)
Q Consensus 786 ~~~--~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~---~-----~~~~-~~---~~~~i~~l~~s 851 (1091)
.|. +.....+.+..+...+.|++. .+ ...++++|.++.+.. . ...+ .. ..+-..++..|
T Consensus 192 eGhaa~F~~~~~~g~~~~~~lf~fa~--r~-----~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs 264 (327)
T d1utca2 192 EGHAASFAQFKMEGNAEESTLFCFAV--RG-----QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 264 (327)
T ss_dssp CCSEEEEEEECCTTCSSCEEEEEEEE--EE-----TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE
T ss_pred cceeeeeEEEEcCCCCCCceEEEEEE--CC-----CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee
Confidence 111 122222222112222222221 11 013688888886521 1 1111 11 23456788888
Q ss_pred CCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEE
Q 001367 852 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 910 (1091)
Q Consensus 852 ~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~ 910 (1091)
+ .-.++..-+.-|.|++||+.++.++..-+--.+.|...+-..+..-++....+|.|.
T Consensus 265 ~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 265 E-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp T-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred c-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 8 556888889999999999999999876665566666555555544555556666554
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.37 E-value=0.0012 Score=48.61 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhcc
Q 001367 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSS 59 (1091)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1091)
++|+.+-|++||...||.+++.+|.+|..++++ ...-...+|.-+|..++.+-.+
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK 63 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence 679999999999999999999999999988764 4555566778888877776544
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=1.8 Score=43.76 Aligned_cols=186 Identities=10% Similarity=0.085 Sum_probs=109.7
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEEccCce---------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 001367 801 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 871 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd 871 (1091)
.....-+++++...++++++...+.|..++.-+ .....+..-..|..++|+. + .|++. .++.+..++
T Consensus 36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~-d--~l~v~-~~~~l~~~~ 111 (381)
T d1xipa_ 36 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHG-D--QVLVS-TRNALYSLD 111 (381)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEET-T--EEEEE-ESSEEEEEE
T ss_pred ccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeC-C--EEEEE-eCCCEEEEE
Confidence 345678899998888988887778888753210 0000111123689999986 3 45544 456688887
Q ss_pred ccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEE
Q 001367 872 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 951 (1091)
Q Consensus 872 ~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la 951 (1091)
..+-........-..++..+.++|. .++....++.+.++++..+..... ..... .......+.+++|++.|+.++
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~--~~~v~-~~~~~~~~~~v~ws~kgkq~v 186 (381)
T d1xipa_ 112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL--AQNVT-SFDVTNSQLAVLLKDRSFQSF 186 (381)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE--EESEE-EEEECSSEEEEEETTSCEEEE
T ss_pred eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccc--cCCcc-eEEecCCceEEEEeCCcEEEE
Confidence 7654333333333456888888775 566677889999999988653221 10000 001113578899999999888
Q ss_pred EEecCeEEEE-EcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEE
Q 001367 952 LVHETHLAIY-EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 952 ~~~d~~i~vw-d~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
++..+...+- ++.....+.. .......|.+|.|..+..++++-+
T Consensus 187 ~~~g~~~q~k~~i~~~~~~~~-p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 187 AWRNGEMEKQFEFSLPSELEE-LPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp EEETTEEEEEEEECCCHHHHT-SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EeCCCceeeccCCCCccccCC-CcCCCcceeEEEEecCceEEEEEC
Confidence 8754443332 2211111111 011245788999998877777553
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.82 E-value=1.7 Score=43.51 Aligned_cols=154 Identities=16% Similarity=0.248 Sum_probs=87.7
Q ss_pred EEEEEeC-----CeEEEEEccC-ceeEEEecCC-------CCCeEEEEE--cCCCCc-EEEEEeCCCeEEEEeccC---c
Q 001367 815 YLFSASG-----GVISLYIVMT-FKTILTIMPP-------SPTATSLAF--NPHDNN-VIAIGMDDSTILIYNARS---S 875 (1091)
Q Consensus 815 ~la~~~d-----g~i~iwd~~~-~~~~~~~~~~-------~~~i~~l~~--s~~~~~-~la~g~~dg~i~iwd~~~---~ 875 (1091)
-++++++ .+|.+|.+.. ...+..+... ...+..+|+ ++.++. ++++...+|.+..|.+.. +
T Consensus 87 di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g 166 (353)
T d1h6la_ 87 DIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNG 166 (353)
T ss_dssp EEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS
T ss_pred EEEEEeCCcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCC
Confidence 4555552 2588887752 2233333321 124556666 665565 566677889998887632 2
Q ss_pred ----ceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCC-CcCCCCCceEEEEc--CCCC
Q 001367 876 ----EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETHIQFH--KDQT 948 (1091)
Q Consensus 876 ----~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~fs--~dg~ 948 (1091)
+.++.+. -...+-.|++.+....|..+-++.-|..++.+.........+....+ +.. ..+..++.- +++.
T Consensus 167 ~v~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~--~D~EGlaiy~~~~~~ 243 (353)
T d1h6la_ 167 YISGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLT--PDIEGLTIYYAADGK 243 (353)
T ss_dssp SEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCC--SCEEEEEEEECGGGC
T ss_pred ceeeEeeeccC-CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCcccc--CCccccEEEEcCCCC
Confidence 2344444 34568899999988888888887666555554322222222322222 211 356666653 3333
Q ss_pred -EEEEE--ecCeEEEEEcCCc-ceeee
Q 001367 949 -RFLLV--HETHLAIYEAEEL-TCLKQ 971 (1091)
Q Consensus 949 -~la~~--~d~~i~vwd~~~~-~~~~~ 971 (1091)
+|+++ .+++..|||..+. +.+..
T Consensus 244 GylivSsQG~n~f~vydr~~~~~~~g~ 270 (353)
T d1h6la_ 244 GYLLASSQGNSSYAIYERQGQNKYVAD 270 (353)
T ss_dssp EEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred eEEEEEcCCCCeEEEEecCCCccccce
Confidence 66664 5678999997653 44433
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.60 E-value=1.8 Score=43.52 Aligned_cols=160 Identities=8% Similarity=0.107 Sum_probs=90.3
Q ss_pred eeEEEEcCCCCceEEEEee------------CCCcEEEEeCCCCcee-EEe--cCCC-----cceEEEeecccCCce-EE
Q 001367 444 VNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRT-YSF--EGHG-----APVYSLCPHAKENIH-FI 502 (1091)
Q Consensus 444 v~~~~~s~d~~~~~l~s~~------------~d~~i~iwd~~~~~~~-~~~--~~~~-----~~v~~~~~~~~~~~~-~l 502 (1091)
..+++..|||. .+++++ ..|.|.++|+.+.+.. ..+ .+.. -....+.+....++. +|
T Consensus 37 ~EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L 114 (340)
T d1v04a_ 37 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 114 (340)
T ss_dssp CCEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence 34577777776 444443 1488999998765432 122 1110 112334433344444 34
Q ss_pred EEE---ecCCeEEEEecCCCCceee----ec-CCCCcEEEEEEcCCCCEEEEEecC-------------CCCceEEEEEe
Q 001367 503 FSI---SVDGKIKAWLYDSLGARVD----YD-APGLGCTRMAYSANGRRLFSCGTS-------------KEGESFLVEWN 561 (1091)
Q Consensus 503 ~s~---~~dg~i~iwd~~~~~~~~~----~~-~~~~~i~~~~~s~d~~~l~~~~~~-------------~~~~~~i~iwd 561 (1091)
++. ....+|.++++........ +. ........+++..++.++++--.. +...+.+.-||
T Consensus 115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 443 2456788888765543322 22 122356888888999888874210 11234555565
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCe
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~~~~ 611 (1091)
... ......+. ...+.++++||+++++++ +..+.|++|++....
T Consensus 195 ~~~--~~~~~~~l----~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 195 PND--VRVVAEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp SSC--EEEEEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCc--eEEEcCCC----CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 433 32222322 467899999999888775 467889999887543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.62 E-value=1.6 Score=44.20 Aligned_cols=136 Identities=7% Similarity=-0.027 Sum_probs=84.4
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec
Q 001367 803 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 882 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 882 (1091)
.|..++|+.| .++...++.+..++..+.............+..+.+.| . .++....+|.+.++++..++......
T Consensus 88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p-~--~~~l~~~~~~~~~~~l~~~~~~~~~~ 162 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQLAQ 162 (381)
T ss_dssp TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCC-c--eeEEEecCCCEEEEEeccCccccccC
Confidence 5888999755 57777788888888876555444444456688888887 3 55667778999999998875432211
Q ss_pred c-----ccCCeEEEEECCCCCEEEEEeCCCcEEEE-EcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 883 G-----HSKRVTGLVFSDALNILVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 883 ~-----h~~~V~~l~~spdg~~las~s~Dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
+ -.+.+.+++|++.|+.++++..++ ..+- ++.. ...+..+... ...+.++.|-.+..++++
T Consensus 163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~-----~~~~~~p~~~---~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSL-----PSELEELPVE---EYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECC-----CHHHHTSCTT---TSEEEEEEESSSSEEEEE
T ss_pred CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCC-----ccccCCCcCC---CcceeEEEEecCceEEEE
Confidence 1 235688888888888887764332 1111 1111 1111111111 125778888877777775
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.88 E-value=5.1 Score=39.81 Aligned_cols=188 Identities=15% Similarity=0.157 Sum_probs=105.5
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecc----cCCceEEEEEec--C--CeEEEEecCCCCce-eeecC
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA----KENIHFIFSISV--D--GKIKAWLYDSLGAR-VDYDA 527 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~--d--g~i~iwd~~~~~~~-~~~~~ 527 (1091)
+++....++-|++||+. |+.++.+. .+.++.+.... ..+..-++.++. + .+|.+|.+...... ..+..
T Consensus 42 lI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp EEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred EEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 56666667679999974 88887764 34556554321 122223444442 2 36888877643322 22222
Q ss_pred C-------CCcEEEEEE--cCC-CCEEEEEecCCCCceEEEEEec---CCc----eeeEEEecccccccceEEEEEcCCC
Q 001367 528 P-------GLGCTRMAY--SAN-GRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK 590 (1091)
Q Consensus 528 ~-------~~~i~~~~~--s~d-~~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~v~~~~~~ 590 (1091)
. ...+..+|+ ++. |...+.... + .+.+..|.+ ..+ +.++.+.. ...+..|.+....
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k--~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde~ 191 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-K--EGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDEY 191 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-S--SSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETTT
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEc-C--CceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCCC
Confidence 1 123566666 665 444444432 2 445666654 233 34445544 2468889999999
Q ss_pred CEEEEEeCCCeEEEEECCC-----CeeEEEEeCCCCCCCCceEEEc--cC--CCEEEEEECCCeEEEEECCCC
Q 001367 591 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFN--KN--GTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--~~--~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
+.|+.+-++..|+.++.+. +..+.......-...+-.++.- .+ |-+|++.-.+++..+|+..+.
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999988777776542 2233222222222345556543 23 334444445789999998754
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.11 E-value=3.8 Score=36.48 Aligned_cols=154 Identities=9% Similarity=0.072 Sum_probs=85.8
Q ss_pred eeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE--EecCCCcceEEE--------eecccCCceEEEEEec-CCeEE
Q 001367 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGAPVYSL--------CPHAKENIHFIFSISV-DGKIK 512 (1091)
Q Consensus 444 v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~~--------~~~~~~~~~~l~s~~~-dg~i~ 512 (1091)
+.-+...-|++. .+++|+......+|-++.|+... .+.+ -+.|+.+ .+. .++..-++++.. .|.++
T Consensus 104 vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI~~d~I~G~g~~-~g~~~sfF~adl~SG~lr 180 (313)
T d2hu7a1 104 MRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFF-GGGRVSLFTSNLSSGGLR 180 (313)
T ss_dssp BEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEE-ETTEEEEEEEETTTEEEE
T ss_pred EEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCC-cceEEeccCCeEEEEeee-cCCcceEEEEecccCCEE
Confidence 433444445665 67777777778888888776432 2221 1223332 222 112222333333 55555
Q ss_pred EEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEE-Eeccc---ccccceEEEEEcC
Q 001367 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQ---LQHNSVSVVHFDT 588 (1091)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~---~~~~~v~~v~~~~ 588 (1091)
+++ ...+.+.....++..+. ++.... -++....-+|+++++..+. +.... ...-.|.-+-+.|
T Consensus 181 i~t-----------pkeGS~~~ay~~~gnKV-~sdyEt-~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~P 247 (313)
T d2hu7a1 181 VFD-----------SGEGSFSSASISPGMKV-TAGLET-AREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP 247 (313)
T ss_dssp EEC-----------CSSEEEEEEEECTTSCE-EEEEEE-SSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECT
T ss_pred Eec-----------CCCCcccceeEccCcee-eeccCC-CCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCC
Confidence 553 44556666667776665 444432 2344444668887765432 11111 0123466677899
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001367 589 AKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1091)
+++.++.+-.||.-++|. +|+.+..
T Consensus 248 dd~L~iiakrdG~s~lF~--nGk~in~ 272 (313)
T d2hu7a1 248 DGRLAVVARREGRSAVFI--DGERVEA 272 (313)
T ss_dssp TSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred CCcEEEEEecCCchheee--cceEecC
Confidence 999989999999999887 4565543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.86 E-value=0.92 Score=44.45 Aligned_cols=224 Identities=11% Similarity=0.061 Sum_probs=105.6
Q ss_pred CeEEEEEccCcee--EEEecCCCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEeccCccee--eeeccccCCe
Q 001367 822 GVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARSSEVI--SKLEGHSKRV 888 (1091)
Q Consensus 822 g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~d---------g~i~iwd~~~~~~~--~~l~~h~~~V 888 (1091)
..+.+||+.+++- +..+..+...- +++.. ++++++.|+.. ..+.+||..+.+.. ..+......-
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~ 95 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 95 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEECCCCeEEECCCCCCcccee-EEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence 3588899887643 32232222222 22222 56677766531 36778888765432 2221111111
Q ss_pred EEEEECCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e-----cCe
Q 001367 889 TGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-----ETH 957 (1091)
Q Consensus 889 ~~l~~spdg~~las~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~-----d~~ 957 (1091)
.++.+ +++.++.++.++. ...++..+........... .. .-..+.. .+++.++.+ . ...
T Consensus 96 ~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~r-----~~~~~~~-~~~~~~~~GG~~~~~~~~~ 165 (288)
T d1zgka1 96 GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT--RR-----IGVGVAV-LNRLLYAVGGFDGTNRLNS 165 (288)
T ss_dssp EEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS--CC-----BSCEEEE-ETTEEEEECCBCSSCBCCC
T ss_pred ecccc--ceeeEEecceecccccceeeeeccccCcccccccccc--cc-----ccceeee-eeecceEecCcccccccce
Confidence 22222 5666666554443 4456766644222111111 00 1112222 244444443 2 235
Q ss_pred EEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceEEEeecccccCCCCcccccce
Q 001367 958 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1032 (1091)
Q Consensus 958 i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1032 (1091)
+..||..+.+............ .......++..++.++.+ .....+|..+...... ...+.. +...
T Consensus 166 ~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~----r~~~ 236 (288)
T d1zgka1 166 AECYYPERNEWRMITAMNTIRS-GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV----APMKHR----RSAL 236 (288)
T ss_dssp EEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC----CCCSSC----CBSC
T ss_pred EEEeeccccccccccccccccc-cccccceeeeEEEecCccccccccceeeeeecceeeecc----cCccCc----ccce
Confidence 8889987765443211111111 112233456666666544 3467777777654421 111111 1111
Q ss_pred eEEEeCCCCCCeEEEEecCCc-----EEEEecCCCCCCcccCCCC
Q 001367 1033 HAIAAHPLKPTQFAVGLTNGE-----VYVIEPNEPGDTWAVLPPD 1072 (1091)
Q Consensus 1033 ~~~~~~p~d~~~l~~g~~dg~-----v~~w~~~~~~~~~~~~~~~ 1072 (1091)
.++.. ++++++.|+.++. +.+||+... +|...++.
T Consensus 237 -~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~ 276 (288)
T d1zgka1 237 -GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD--TWSEVTRM 276 (288)
T ss_dssp -EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEEC
T ss_pred -EEEEE--CCEEEEEecCCCCeecceEEEEECCCC--EEEECCCC
Confidence 22222 4788888887653 678888664 58877543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.66 E-value=7.2 Score=38.74 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=101.5
Q ss_pred cEEEEEECCCCCEEEEEEC------------CCEEEEEEeeCCcccceeEEEeccc-----cCeeEEEE--cCCCCceEE
Q 001367 398 SVNRVVWSPDGSLLGVAYS------------KHIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAF--SAPCKQISV 458 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~------------d~~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~~~~--s~d~~~~~l 458 (1091)
..-.++..|||..+++++. .|.|.++|+.+.........+.+.. -.-..+.. .++|+. +|
T Consensus 36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L 114 (340)
T d1v04a_ 36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YL 114 (340)
T ss_dssp CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EE
T ss_pred CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EE
Confidence 3446888999988877642 3889999987754332222222211 11233332 456664 34
Q ss_pred EEe---eCCCcEEEEeCCCCce-e---EEecC-CCcceEEEeecccCCceEEEEEec---------------CCeEEEEe
Q 001367 459 ITC---GDDKTIKVWDAVTGSR-T---YSFEG-HGAPVYSLCPHAKENIHFIFSISV---------------DGKIKAWL 515 (1091)
Q Consensus 459 ~s~---~~d~~i~iwd~~~~~~-~---~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---------------dg~i~iwd 515 (1091)
+.. ....+|.+|++..+.. + .++.. .....+.+++. +++.++++-.. -+...+|.
T Consensus 115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~--~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~ 192 (340)
T d1v04a_ 115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 192 (340)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe--cCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence 433 2456788888764432 1 22221 12335666663 35566666311 12233444
Q ss_pred cCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE
Q 001367 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 595 (1091)
.+........ ..-.....++++||+++|+++... ...|+.|++............. -....-.+.+.+++..+.+
T Consensus 193 ~~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~---~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwv 267 (340)
T d1v04a_ 193 YSPNDVRVVA-EGFDFANGINISPDGKYVYIAELL---AHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWV 267 (340)
T ss_dssp ECSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEE
T ss_pred EcCCceEEEc-CCCCccceeEECCCCCEEEEEeCC---CCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEE
Confidence 4443333222 223356789999999999887652 5568888876443222211111 1245667778764444444
Q ss_pred E
Q 001367 596 A 596 (1091)
Q Consensus 596 ~ 596 (1091)
+
T Consensus 268 a 268 (340)
T d1v04a_ 268 G 268 (340)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.50 E-value=4.4 Score=42.39 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=37.9
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCccee--eeec------cccCCeEEEEECCC
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLE------GHSKRVTGLVFSDA 896 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~--~~l~------~h~~~V~~l~~spd 896 (1091)
...++|+|.| +++++++--..|.|++++..+++.. ..+. .-.+....|+|+|+
T Consensus 27 ~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 4678999999 8888876655799999998776532 2221 12345788999985
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.32 E-value=5.2 Score=41.76 Aligned_cols=113 Identities=11% Similarity=0.087 Sum_probs=63.8
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCC---CCEEEEE-e------
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLLV-H------ 954 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d---g~~la~~-~------ 954 (1091)
-...++|+|.|||++|++--..|.|++++..++.......+...............++|+|+ ..++..+ .
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 35678999999999998765579999998887664432222111111111235788999985 3444331 1
Q ss_pred -c----Ce--EEEEEcCCcc-------eeeeee-cCCccCEEEEEEeeCCCEEEEEEc
Q 001367 955 -E----TH--LAIYEAEELT-------CLKQWF-PISSVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 955 -d----~~--i~vwd~~~~~-------~~~~~~-~~h~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
+ +. +..+...... .+.... .........|.|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 0 11 3333322211 111111 111234578999999998777664
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.28 E-value=13 Score=35.44 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=50.1
Q ss_pred CeEEEEEccCceeEEEecCCCC-CeEEEEEcCCCCcEEEEEeCCC-----eEEEEeccCcceeeeeccccCCeE-EEEEC
Q 001367 822 GVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVT-GLVFS 894 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg-----~i~iwd~~~~~~~~~l~~h~~~V~-~l~~s 894 (1091)
..+..||..+.+-...-..... ...+++.. ++.+++.|+.++ ....+|..+.+....-........ +++ .
T Consensus 164 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~ 240 (288)
T d1zgka1 164 NSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT-V 240 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-E
T ss_pred ceEEEeeccccccccccccccccccccccce--eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEE-E
Confidence 3478888876654432221111 22233333 456777766543 567778776543322111111111 222 2
Q ss_pred CCCCEEEEEeCCC-----cEEEEEcCCCce
Q 001367 895 DALNILVSSGGDA-----QIFVWDVDGWGI 919 (1091)
Q Consensus 895 pdg~~las~s~Dg-----~i~vwd~~~~~~ 919 (1091)
.++++++.|+.++ .|.+||+.+..-
T Consensus 241 ~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 270 (288)
T d1zgka1 241 HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 270 (288)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred ECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence 3678888877654 378999998653
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.77 E-value=0.49 Score=40.69 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=49.4
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccc
Q 001367 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLS 131 (1091)
Q Consensus 72 ~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 131 (1091)
++|.|+-+.||||+..|..++|..|+.+.-..+.....+.+++|..+.......+++...
T Consensus 45 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~ 104 (149)
T d2nxpa1 45 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETML 104 (149)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHH
Confidence 899999999999999999999999999865555555778889999888877665555433
|