Citrus Sinensis ID: 001368

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090-
MPRSYVREDVPLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF
ccccccccccccccccHHHHcHHHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccc
cccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHHHHHHHccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccHHHHHcccccccccccccccHcccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHcc
mprsyvredvplsrFGVLVAQLESIVAsasqqspdpllCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIiskgdnisvYSRVSSlqgflsdgkksepqkVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALegsggsaaASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAhiggpclgvgeldnsaTHCVKAIEDPIASVRDAFAEALGSLLAlgmnpqaqvqpkgkgpfppakklegglqrhlalpftrangaksknmrVNLTLSWVYFLQAIRLKyfhpdselqDYALQVMDMLRADIFVDSHALACVLYILRIgvtdqmteptQRSFLVFLGKqlqavdaspfMKIAALRTLSYTLKtlgevpsefKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRenvsfekgSSLMVELDSLHGQATVVAALIFispklplgyparlpKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLAsmpkeeleDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFlspdaansgillQPVMVYLSRALSYISTIAakelpnikpamDIFIIRTLIAyqslpdpvsyksdhpqliklcttpyrdasaceeSSCLRLLLDkrdawlgpwipgrdwfedelcafqggkdglmpcvwenevssfpqpetIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLnlrpqtlgsEVLNSIQAIFLSILAEGDICASQRRALLlgdltvvtdanyaGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKtsipglqmwsLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVlgpelapgsiffsrckvsawqcsspkwsvrFTQQLVLfapqavsvHSHVQTLLSTLSSRQPILRHLAVSTLRHLiekdpdsvIEERIEGnlfhmldeetdseyVKSYTLCLAYFSSFYAFYleneylpcf
mprsyvredvplsrFGVLVAQLESIVAsasqqspdPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRiiskgdnisVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPftrangaksknmRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIaakelpnikPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLstlssrqpILRHLAVSTLRhliekdpdsvIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF
MPRSYVREDVPLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRqeallllqnalegsggsaaasaYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQpkgkgpfppakkLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWlllssllASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVgllaglkallnlRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF
*********VPLSRFGVLVAQLESIVAS******DPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGF***********VAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALG****************************LALPFTRA****SKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLT****NTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLP**
***********LSRFGVLVA*****************LCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLA************************************************NLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLN*******************SLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLT********ATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLF*************LTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALS*****************DIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLK*****SWHAASVTNICVGLLAGLKA****************IQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF
MPRSYVREDVPLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQ***************GAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALE********SAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQ*********PFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLK********AASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF
*****VREDVPLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQ********GPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF
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MPRSYVREDVPLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1091 2.2.26 [Sep-21-2011]
Q9P2D3 2071 HEAT repeat-containing pr yes no 0.903 0.476 0.252 4e-53
A1A5F2 2052 HEAT repeat-containing pr yes no 0.900 0.478 0.254 6e-53
Q8C547 2070 HEAT repeat-containing pr yes no 0.901 0.475 0.250 6e-52
Q5PRF0 2038 HEAT repeat-containing pr no no 0.872 0.467 0.249 8e-45
Q8JFV4 1998 HEAT repeat-containing pr no no 0.877 0.478 0.246 1e-42
A0JP94 2021 HEAT repeat-containing pr no no 0.868 0.469 0.251 6e-42
Q86XA9 2040 HEAT repeat-containing pr no no 0.865 0.462 0.241 3e-41
>sp|Q9P2D3|HTR5B_HUMAN HEAT repeat-containing protein 5B OS=Homo sapiens GN=HEATR5B PE=1 SV=2 Back     alignment and function desciption
 Score =  211 bits (536), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 281/1113 (25%), Positives = 485/1113 (43%), Gaps = 127/1113 (11%)

Query: 32   QSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGR 91
            ++  P+  F+ L  L   +    K  +   Q+K  + L  L+      P R L +  +  
Sbjct: 19   EAKRPVFIFEWLRFLDKVLVAANKTDVKEKQKKLVEQLTGLISSSPGPPTRKLLAKNLAA 78

Query: 92   IISKGDNISVYSRVSSLQGFLSDGKKSE---PQKVAGAAQCLGELYRQFGRRITSGLLET 148
            + S GD  +V+  +      + +   +    P K+A  A C+G  Y + GR + S   ET
Sbjct: 79   LYSIGDTFTVFQTLDKCNDIIRNKDDTAAYLPTKLAAVA-CVGAFYEKMGRMLGSAFPET 137

Query: 149  TIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRI 208
                 K +K  E   R E L+ LQ  L G GG AAAS++ + ++   R  + D+S  VR 
Sbjct: 138  VNNLLKSLKSAESQGRSEILMSLQKVLSGLGG-AAASSHRDIYK-NARSLLTDRSMAVRC 195

Query: 209  AGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNP-Q 267
            A A+CL    +     +   EL+N AT C KA+E+    VR A ++ LG+++A  + P Q
Sbjct: 196  AVAKCLLELQN-EAVFMWTAELENIATLCFKALENSNYGVRVAVSKLLGTVMATALMPKQ 254

Query: 268  AQV--QPKGKGPFPPAKKLEG-GLQR------HLALPFTRANGAKSKNMRVNLTLSWVYF 318
            A V  Q   +  F    +L   G  R             +  G+ ++ +RV +T ++V F
Sbjct: 255  ATVMRQNVKRATFDEVLELMATGFLRGGSGFLKSGGEMLKVGGSVNREVRVGVTQAYVVF 314

Query: 319  LQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALA-----CVLYILRIGVTDQMTEP 373
            +  +  ++   +     +   V+D++       +H  A     CV +ILR  V   + E 
Sbjct: 315  VTTLGGQWL--ERSFATFLSHVLDLVSHPRATQTHVEAVYSRRCVSFILRATVGSLLGEK 372

Query: 374  TQ----RSFLVFLGKQLQAVDA------------------SPFMKIAALRTLSYTLKTLG 411
             Q    +     +GKQ++AV+A                  S  + + AL+ L   +++L 
Sbjct: 373  AQIAAAKEICQAIGKQMKAVEAVVNDTSGENKSGAADIAASQHVMVCALQELGSLVQSLN 432

Query: 412  EVPS----EFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLN 467
               S    E    L   V + + H S   R+ AA  LR +A   P  ++  +      LN
Sbjct: 433  ATASPLIQEASIGLLEIVTSVLLHPSMAARLAAAWCLRCVAVALPFQLTPFLDRCAERLN 492

Query: 468  ALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTE 527
             L+ +             +++ G +  +AAL+    + PLG P    K+V+ +++ +L  
Sbjct: 493  NLKTSP------------EAVSGYSFAMAALLGGVHQCPLGIPHAKGKMVVSIAEDLLRT 540

Query: 528  SSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHII--KQHG 585
            +++N+  +    +AGWLLL +L+   P   +   +  +L LW  +F  + + +   K  G
Sbjct: 541  AAQNSRLSLQRTQAGWLLLGALMTLGPSV-VRYHLPKMLLLWRNVFPRSLKELEAEKARG 599

Query: 586  DLTSKICVLSTAVDALTAFVRCFLS--PDAANSGI---LLQPVMVYLSRALSYISTIAAK 640
            D  +    L     AL A +R F++  P+     +   L+ P+   ++  +S+I ++   
Sbjct: 600  DSFTWQVTLEGRAGALCA-MRSFVAHCPELLTEDVIRKLMTPIECAMT-MMSHIPSVMKA 657

Query: 641  ELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYR--DASACEESSCLRL 698
               ++K +  +  +R       LP P +Y+     L++     +   D SA   +S LR 
Sbjct: 658  HGAHLKASAAMVRLRLYDILALLP-PKTYEGSFNALLRELVAEFTLTDNSANTTTSLLRS 716

Query: 699  LLDKRDA-WLGPWIPGRDW--FEDELCAFQGGKDGLMPCVWENEVSSF----------PQ 745
            L    D+  LG W+   D    ED+L        G +    E++ SS           P 
Sbjct: 717  LCHYDDSVLLGSWLQETDHKSIEDQLQPNSASGSGAL----EHDPSSIYLRIPAGEAVPG 772

Query: 746  PETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLL 805
            P  +  ++++  +  FG++F        L +L    +C+K  K     A  + NI   +L
Sbjct: 773  PLPLGVSVIDASVALFGVVFPHVSYKHRLQMLDHFAECVKQAKGVRQQAVQL-NIFTAVL 831

Query: 806  AGLKALLNLRPQTLG-SEVLNSIQAIFLSILAEGD---ICASQ----RRALLLGDLTVVT 857
            + LK L   +  TLG  EV  S   + +  L   +    CA+     R A ++G+ T + 
Sbjct: 832  SALKGLAENK-STLGPEEVRKSALTLVMGPLDNPNPILRCAAGEALGRMAQVVGEATFIA 890

Query: 858  D-ANYA-------------GSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSI-PG 902
              A Y+                +LA+GC+HR  GG+     +  +VS +  LA+    P 
Sbjct: 891  RMAQYSFDKLKSARDVVSRTGHSLALGCLHRYVGGIGSGQHLKTSVSILLALAQDGTSPE 950

Query: 903  LQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVL 962
            +Q WSLH L L ++++G  +  +V+ TL L + +LL+      ++ Q +GR + AI+  +
Sbjct: 951  VQTWSLHSLALIVDSSGPMYRGYVEPTLSLVLTLLLTVPPSHTEVHQCLGRCLGAIITTV 1010

Query: 963  GPEL----APGSIFFSRCKVSAWQCSSPKWS------VRFTQQLVLFAPQAVSVHSHVQT 1012
            GPEL    A  S   S C V          S      +   QQL +FAP+ V++ S V +
Sbjct: 1011 GPELQGNGATTSTIRSSCLVGCAITQDHSDSLVQAAAISCLQQLHMFAPRHVNLSSLVPS 1070

Query: 1013 LLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIE 1045
            L   L S   +LR  AV+ LR L +++   V E
Sbjct: 1071 LCVHLCSSHLLLRRAAVACLRQLAQREAAEVCE 1103

Homo sapiens (taxid: 9606)
>sp|A1A5F2|HTR5B_XENTR HEAT repeat-containing protein 5B OS=Xenopus tropicalis GN=heatr5b PE=2 SV=1 Back     alignment and function description
>sp|Q8C547|HTR5B_MOUSE HEAT repeat-containing protein 5B OS=Mus musculus GN=Heatr5b PE=2 SV=3 Back     alignment and function description
>sp|Q5PRF0|HTR5A_MOUSE HEAT repeat-containing protein 5A OS=Mus musculus GN=Heatr5a PE=2 SV=2 Back     alignment and function description
>sp|Q8JFV4|HTR5A_DANRE HEAT repeat-containing protein 5A OS=Danio rerio GN=heatr5a PE=2 SV=1 Back     alignment and function description
>sp|A0JP94|HTR5A_XENTR HEAT repeat-containing protein 5A OS=Xenopus tropicalis GN=heatr5a PE=2 SV=1 Back     alignment and function description
>sp|Q86XA9|HTR5A_HUMAN HEAT repeat-containing protein 5A OS=Homo sapiens GN=HEATR5A PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1091
359488185 2264 PREDICTED: HEAT repeat-containing protei 0.974 0.469 0.802 0.0
296087293 2315 unnamed protein product [Vitis vinifera] 0.974 0.459 0.765 0.0
449482284 2218 PREDICTED: HEAT repeat-containing protei 0.986 0.485 0.759 0.0
449447703 2223 PREDICTED: HEAT repeat-containing protei 0.986 0.484 0.753 0.0
356567286 2349 PREDICTED: HEAT repeat-containing protei 0.965 0.448 0.777 0.0
240254326 2221 HEAT repeat-containing protein [Arabidop 0.971 0.477 0.719 0.0
334183701 2222 HEAT repeat-containing protein [Arabidop 0.971 0.477 0.719 0.0
334183699 2223 HEAT repeat-containing protein [Arabidop 0.971 0.476 0.719 0.0
255551368 2035 conserved hypothetical protein [Ricinus 0.853 0.457 0.710 0.0
218198270 2232 hypothetical protein OsI_23125 [Oryza sa 0.965 0.471 0.620 0.0
>gi|359488185|ref|XP_002279980.2| PREDICTED: HEAT repeat-containing protein 5B-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1725 bits (4467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 876/1091 (80%), Positives = 970/1091 (88%), Gaps = 28/1091 (2%)

Query: 1    MPRSYVREDVPLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILL 60
            M + YVRE+VPLSRFGVLVAQLESIVAS+SQQ PD LLCFDLLSDLISAIDEEPKESILL
Sbjct: 1    MAKKYVRENVPLSRFGVLVAQLESIVASSSQQPPDALLCFDLLSDLISAIDEEPKESILL 60

Query: 61   WQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEP 120
            WQRKCEDALYSLLILGARRPVRHLASVAM RIISKGD IS+YSR S+LQGFLSDGK+SEP
Sbjct: 61   WQRKCEDALYSLLILGARRPVRHLASVAMARIISKGDTISIYSRASTLQGFLSDGKRSEP 120

Query: 121  QKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG 180
            Q++AGAAQCLGELYR FGRRITSGLLETTIIA KLMKF+EEFVR EAL +LQNALEGSGG
Sbjct: 121  QRLAGAAQCLGELYRLFGRRITSGLLETTIIATKLMKFHEEFVRLEALHMLQNALEGSGG 180

Query: 181  SAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKA 240
            SAA+SAYSEAFRLIMRFA+ DKSF+VRIA ARCL+AFA+IGGP LG GE DNSA++CVK 
Sbjct: 181  SAASSAYSEAFRLIMRFAVGDKSFIVRIAAARCLRAFANIGGPGLGAGEFDNSASYCVKV 240

Query: 241  IEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRAN 300
            ++DP++SVRDAFAEALG+L+ALGMNP+AQVQPKGKG   P KKLEGGLQR+L LPF +A+
Sbjct: 241  LDDPVSSVRDAFAEALGALVALGMNPEAQVQPKGKGHVTPTKKLEGGLQRYLVLPFVKAS 300

Query: 301  GAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLY 360
            G + KN+R+ LT SWV+FLQAIRLKY HPDSELQ++ALQ+MDMLRAD  VD+ ALACVLY
Sbjct: 301  GVRLKNIRIGLTFSWVFFLQAIRLKYLHPDSELQNFALQIMDMLRADSSVDAQALACVLY 360

Query: 361  ILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEV 420
            ILR+GVTDQMTEPTQRSFLV LGKQLQ+ D SPFM +AALRTLSYTLKTLGEVP EFKEV
Sbjct: 361  ILRVGVTDQMTEPTQRSFLVLLGKQLQSPDLSPFMAVAALRTLSYTLKTLGEVPLEFKEV 420

Query: 421  LDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSS 480
            LD+TVVAA+SHSSQLVRIEAALTLRALAEVDPTCV GL++YGVTTLNALRENVSFEKGS+
Sbjct: 421  LDNTVVAAMSHSSQLVRIEAALTLRALAEVDPTCVGGLVSYGVTTLNALRENVSFEKGSN 480

Query: 481  LMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKE 540
            L VELDSLHGQA V+AAL+ ISPKLPLGYPARLP+ VLEVSKKML ESSRN +AATVEKE
Sbjct: 481  LRVELDSLHGQAAVLAALVSISPKLPLGYPARLPRSVLEVSKKMLLESSRNPVAATVEKE 540

Query: 541  AGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDA 600
            AGWLLLSSLLASMPKEELED+VFDILSLWA+LFSGN EH I + GDL+S ICV S AVDA
Sbjct: 541  AGWLLLSSLLASMPKEELEDEVFDILSLWASLFSGNPEHQIMRTGDLSSSICVWSAAVDA 600

Query: 601  LTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAY 660
            LTAFV+CF+  +  N+GILLQPV++YLSRALSYIS +AAKELPN+KP +DIFIIRTLIAY
Sbjct: 601  LTAFVKCFVPSNTLNNGILLQPVLLYLSRALSYISFLAAKELPNVKPELDIFIIRTLIAY 660

Query: 661  QSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDE 720
            QSLPDP++Y S+H Q+++LCTTP+RDAS C ESSCLRLLLD RDAWLGPW PGRDWFEDE
Sbjct: 661  QSLPDPMAYTSEHAQILQLCTTPFRDASGCAESSCLRLLLDNRDAWLGPWTPGRDWFEDE 720

Query: 721  LCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGII 780
            L AFQGGKDGL+PCVWE+EVSSFPQP+TI+  LVNQMLLCFGIMFASQ + GM+SLLG++
Sbjct: 721  LRAFQGGKDGLVPCVWESEVSSFPQPDTIRNLLVNQMLLCFGIMFASQDNGGMMSLLGML 780

Query: 781  EQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDI 840
            EQCLK GKKQ WHAASVTNICVGLLAGLKALL LR   LG E+LNS QAIF +ILAEGDI
Sbjct: 781  EQCLKTGKKQLWHAASVTNICVGLLAGLKALLALRSHGLGLEILNSAQAIFQNILAEGDI 840

Query: 841  CASQRRA----------------------LLLGDLTVVTDANYAGSIALAIGCIHRSAGG 878
            CASQRRA                       LLGDLT  TD+NYAGSIA+A+GCIHRSAGG
Sbjct: 841  CASQRRASSEGLGLLARLGNDMFTARMTRSLLGDLTGATDSNYAGSIAVALGCIHRSAGG 900

Query: 879  MALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILL 938
            MALS+LVPATVSSIS LAK++I  L++WSLHGLLLTIEAAG S+VSHVQATLGLAM+ILL
Sbjct: 901  MALSTLVPATVSSISSLAKSAISSLKIWSLHGLLLTIEAAGLSYVSHVQATLGLAMDILL 960

Query: 939  SEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCK-----VSAWQCSSPKW-SVRF 992
            SEEN W+DLQQGVGRLINAIVAVLGPELAPGSIFFSRCK     +S+WQ +S    SVRF
Sbjct: 961  SEENVWIDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKSVIAEISSWQETSTLLESVRF 1020

Query: 993  TQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNL 1052
            TQQLVLFAPQAVSVHSHVQTLL TLSSRQP LRH AVST+RHLIEKDP SVI+E+IE NL
Sbjct: 1021 TQQLVLFAPQAVSVHSHVQTLLPTLSSRQPTLRHRAVSTIRHLIEKDPVSVIDEQIEDNL 1080

Query: 1053 FHMLDEETDSE 1063
            FHMLDEETDSE
Sbjct: 1081 FHMLDEETDSE 1091

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087293|emb|CBI33667.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449482284|ref|XP_004156237.1| PREDICTED: HEAT repeat-containing protein 5B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449447703|ref|XP_004141607.1| PREDICTED: HEAT repeat-containing protein 5B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356567286|ref|XP_003551852.1| PREDICTED: HEAT repeat-containing protein 5B-like [Glycine max] Back     alignment and taxonomy information
>gi|240254326|ref|NP_176885.7| HEAT repeat-containing protein [Arabidopsis thaliana] gi|332196479|gb|AEE34600.1| HEAT repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334183701|ref|NP_001185337.1| HEAT repeat-containing protein [Arabidopsis thaliana] gi|332196481|gb|AEE34602.1| HEAT repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334183699|ref|NP_001185336.1| HEAT repeat-containing protein [Arabidopsis thaliana] gi|332196480|gb|AEE34601.1| HEAT repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255551368|ref|XP_002516730.1| conserved hypothetical protein [Ricinus communis] gi|223544103|gb|EEF45628.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|218198270|gb|EEC80697.1| hypothetical protein OsI_23125 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1091
MGI|MGI:2444098 2070 Heatr5b "HEAT repeat containin 0.164 0.086 0.335 3.3e-41
FB|FBgn0037541 2165 CG2747 [Drosophila melanogaste 0.179 0.090 0.336 4.4e-38
MGI|MGI:2444133 2038 Heatr5a "HEAT repeat containin 0.167 0.089 0.316 8.3e-38
WB|WBGene00015743 2076 C13F10.4 [Caenorhabditis elega 0.168 0.088 0.309 1.2e-25
ASPGD|ASPL0000006743 2070 AN6598 [Emericella nidulans (t 0.211 0.111 0.267 2.5e-23
UNIPROTKB|G4N3J9 2099 MGG_04982 "HEAT repeat protein 0.108 0.056 0.267 6.3e-12
MGI|MGI:2444098 Heatr5b "HEAT repeat containing 5B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 233 (87.1 bits), Expect = 3.3e-41, Sum P(4) = 3.3e-41
 Identities = 64/191 (33%), Positives = 101/191 (52%)

Query:   866 ALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSI-PGLQMWSLHGLLLTIEAAGFSFVS 924
             +LA+GC+HR  GG+     +  +VS +  LA+    P +Q WSLH L L ++++G  +  
Sbjct:   913 SLALGCLHRYVGGIGSGQHLKTSVSILLALAQDGTSPEVQTWSLHSLALIVDSSGPMYRG 972

Query:   925 HVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPEL----APGSIFFSRCKVSA 980
             +V+ TL L + +LL+      ++ Q +GR + AI+  +GPEL    A  S   S C V  
Sbjct:   973 YVEPTLSLVLTLLLTVPPSHTEVHQCLGRCLGAIITTVGPELQGNAATISTIRSSCLVGC 1032

Query:   981 --WQCSSPKW----SVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRH 1034
                Q  S       ++   QQL +FAP+ V++ S V +L   L S   +LR  AV+ LR 
Sbjct:  1033 AITQDHSDSLVQAAAISCLQQLHMFAPRHVNLSSLVPSLCVHLCSSHLLLRRAAVACLRQ 1092

Query:  1035 LIEKDPDSVIE 1045
             L +++   V E
Sbjct:  1093 LAQREAAEVCE 1103
GO:0005515 "protein binding" evidence=IPI
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
FB|FBgn0037541 CG2747 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:2444133 Heatr5a "HEAT repeat containing 5A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00015743 C13F10.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ASPGD|ASPL0000006743 AN6598 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4N3J9 MGG_04982 "HEAT repeat protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1091
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 100.0
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 99.49
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.61
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.31
KOG18241233 consensus TATA-binding protein-interacting protein 98.3
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.14
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 97.99
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.76
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.68
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.6
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 97.57
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 97.51
PRK09687280 putative lyase; Provisional 97.42
PRK09687280 putative lyase; Provisional 97.24
KOG09151702 consensus Uncharacterized conserved protein [Funct 97.15
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.06
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.99
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.82
TIGR02270410 conserved hypothetical protein. Members are found 96.69
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.67
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 96.5
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.48
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 96.43
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.38
PTZ00429 746 beta-adaptin; Provisional 96.33
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.33
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 96.23
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 96.16
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 96.12
PTZ00429746 beta-adaptin; Provisional 96.05
PF05004309 IFRD: Interferon-related developmental regulator ( 95.99
PF05004309 IFRD: Interferon-related developmental regulator ( 95.72
KOG1242569 consensus Protein containing adaptin N-terminal re 95.72
PF13251182 DUF4042: Domain of unknown function (DUF4042) 95.71
KOG12401431 consensus Protein kinase containing WD40 repeats [ 95.64
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 95.54
KOG0212675 consensus Uncharacterized conserved protein [Funct 95.08
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.32
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 94.14
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 93.85
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 93.84
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 93.67
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 93.59
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 93.45
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 93.42
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 93.38
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 93.16
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 93.05
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 92.29
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 92.28
KOG1820815 consensus Microtubule-associated protein [Cytoskel 91.88
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 91.87
KOG4535728 consensus HEAT and armadillo repeat-containing pro 91.77
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 91.66
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 91.53
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 91.49
KOG0212 675 consensus Uncharacterized conserved protein [Funct 90.98
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 90.9
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 90.89
KOG09151702 consensus Uncharacterized conserved protein [Funct 90.74
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 90.6
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 89.47
COG1413335 FOG: HEAT repeat [Energy production and conversion 89.37
TIGR02270410 conserved hypothetical protein. Members are found 89.27
KOG4653982 consensus Uncharacterized conserved protein [Funct 89.22
KOG12481176 consensus Uncharacterized conserved protein [Funct 88.59
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 88.46
KOG2259823 consensus Uncharacterized conserved protein [Funct 88.19
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 87.25
KOG2259823 consensus Uncharacterized conserved protein [Funct 86.08
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 86.04
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 85.53
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 84.88
COG5096757 Vesicle coat complex, various subunits [Intracellu 84.64
KOG1820815 consensus Microtubule-associated protein [Cytoskel 83.7
KOG15251266 consensus Sister chromatid cohesion complex Cohesi 83.65
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 83.29
KOG1242569 consensus Protein containing adaptin N-terminal re 82.95
COG5096 757 Vesicle coat complex, various subunits [Intracellu 81.63
KOG2025892 consensus Chromosome condensation complex Condensi 81.63
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 81.25
PF08167165 RIX1: rRNA processing/ribosome biogenesis 80.97
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 80.93
KOG19491005 consensus Uncharacterized conserved protein [Funct 80.56
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 80.47
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-159  Score=1465.15  Aligned_cols=1051  Identities=32%  Similarity=0.455  Sum_probs=915.5

Q ss_pred             cccchhHHHHHHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 001368           12 LSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGR   91 (1091)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~   91 (1091)
                      +++++++++++|++++...|+  ||+|+|||++++++.++..+|+|++..|++++++|.+.+..++|||+|+|++.|+++
T Consensus         1 Ms~~~~l~~~e~s~~~~~~~k--~p~~~~e~l~~l~~~l~~~~ke~~l~tQ~~~~~~l~s~~~~~~~~p~rkL~s~~i~r   78 (2067)
T KOG1822|consen    1 MSLASLLLLNETSLVASPEQK--RPVFCLEWLRYLERNLNEEQKEDLLVTQLKLEQQLISRLTNGAGPPTRKLISVAIAR   78 (2067)
T ss_pred             CCcchhhHhhHHHhhcchhhc--ccHHHHHHHHHHHhcCCcchhHHHHHHhHHHHHHHHHHHccCCCchhHHHHHHHHHH
Confidence            468999999999999998887  999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 001368           92 IISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLL  171 (1091)
Q Consensus        92 l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L  171 (1091)
                      +|+.||++++|+++|.|++.+++++.+.|.++.+|..|+|++|+.+|+++++..+++++++.|+.|.|++..|.++|.++
T Consensus        79 l~~~gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l  158 (2067)
T KOG1822|consen   79 LISNGDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMITL  158 (2067)
T ss_pred             HHhccchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999997665555555599999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHH
Q 001368          172 QNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRD  250 (1091)
Q Consensus       172 ~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~  250 (1091)
                      .++++|+|+.. +...|++||| +.|+++.||++.||.||++|+.++.+.++|.+.++|+|+..++|||++|++++++|+
T Consensus       159 ~~~~~~~g~~s~~~~~~k~i~l-~~k~~lld~s~~v~iaa~rc~~a~s~~~~~~~~~Sele~~~s~cfk~~~~s~~~~r~  237 (2067)
T KOG1822|consen  159 HNALKGMGGTSAATATHKAIRL-IAKNSLLDRSFNVKIAAARCLKAFSNLGGPGLGTSELETLASYCFKGIEISNSEVRC  237 (2067)
T ss_pred             HHHHHHhccchHHHHHHHHHHH-HHhhhhhhhhHHHHHHhHHHHHHHHhhcCccccchhhhhhcceeeeeeccchHHHHH
Confidence            99999999655 6889999999 699999999999999999999999999766667999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCcCCCCCCCCCCC--CCChHHHHHHHhhhhhcc--------cCC-------CCcchhHHHHHH
Q 001368          251 AFAEALGSLLALGMNPQAQVQPKGKGPFPP--AKKLEGGLQRHLALPFTR--------ANG-------AKSKNMRVNLTL  313 (1091)
Q Consensus       251 a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~--~k~~e~~l~~~Ls~~f~r--------~~~-------~~~r~~R~Gv~~  313 (1091)
                      ++|+++|++++..+.|....++.+++|..+  .+..++.+. ....+|.+        +.+       ++.+++|+|++.
T Consensus       238 a~a~~~~~Lla~~~~~~s~~~~~~~g~~~pa~~~~~~~~L~-~~~~~fl~~~~~~~l~~~~~i~~~s~~~~~~~r~g~s~  316 (2067)
T KOG1822|consen  238 AVAEFLGSLLALGMHPESAVQKAKKGPFVPAKDKNTREGLA-LSWSGFLRGGRIRFLKGDSEILVGSSPVMRDVRVGSSI  316 (2067)
T ss_pred             HHHHHHHHHHhccCCchhhhhhcccCCCCCccchhHHHHHH-HHHHHHHhcchhhhhccchhheecccchhhhhhcchhH
Confidence            999999999998866666666666665443  344456553 44444444        331       456999999999


Q ss_pred             HHHHHHHHhccccCCCCchhhHHHHHHHHHhcc--CCCc-----c-HHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhh
Q 001368          314 SWVYFLQAIRLKYFHPDSELQDYALQVMDMLRA--DIFV-----D-SHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQ  385 (1091)
Q Consensus       314 ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~--~~~~-----~-~~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~  385 (1091)
                      ||+.|++.+|..|++++  ...+-.|++++...  +++.     | ...|+|+.|++|++||.++||++|...+..++..
T Consensus       317 ~~v~~v~~~g~~~l~~~--~~a~~~~~~dl~~~~~~~~~~~~~~~~t~~r~~~~Fl~r~~Ig~~l~~~A~~~~~~~~~~~  394 (2067)
T KOG1822|consen  317 CYVVFVQSLGLAWLEKN--LSAFRAHILDLVLLGEVPHETSEFSDATLSRYLISFLLRVTIGALLLEKAQALQCKEIVGL  394 (2067)
T ss_pred             HHHHHHHHhhhhccchh--HHHHHhHHHhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999999974  55555599998884  2332     2 2568999999999999999999998777766621


Q ss_pred             c----c-----c------CC------CChhHHHHHHHHHHHHHHHhCCCchh----hHHHHHHHHHHHhcCCchHHHHHH
Q 001368          386 L----Q-----A------VD------ASPFMKIAALRTLSYTLKTLGEVPSE----FKEVLDSTVVAAVSHSSQLVRIEA  440 (1091)
Q Consensus       386 ~----~-----~------~~------~s~~~lv~aL~el~~Ll~~LGsa~~~----~~~~l~d~l~~ll~hps~svRi~A  440 (1091)
                      .    .     +      .|      .+.|..+++++++.+++.++|++...    ...++.|..+..+.||..++|++|
T Consensus       395 ~~~~~~~~~~~~~~~se~~d~~~~~~~s~~~~v~~l~~l~s~~~gl~tt~~~~l~ds~l~i~~~~~~~l~~p~as~r~~a  474 (2067)
T KOG1822|consen  395 LSKYVTSLDADRESNSEKGDKLKEDLASQHLQVAALAELSSLSPGLGTTAPSLLPDSTLQILDLILTELRHPVASARLEA  474 (2067)
T ss_pred             HHHHHhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            1    1     0      11      24588999999999999999997763    466799999999999999999999


Q ss_pred             HHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHHHHHHHhh-cCCCCCccCCchhHHHHH
Q 001368          441 ALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFI-SPKLPLGYPARLPKLVLE  519 (1091)
Q Consensus       441 A~cLr~~~~a~P~~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~alAALl~~-~~~~pLgvp~~~~~~V~~  519 (1091)
                      ||||||++.++|.++++++++|+++++.+.++.+        ..++.+.|||+++|||+++ +..||+||||.++++||+
T Consensus       475 aw~Lrcll~~~P~~l~p~id~~~~~~e~~~kq~~--------s~~~~~sg~S~aiaaLl~~~~~~~plgIp~~k~~~v~~  546 (2067)
T KOG1822|consen  475 AWLLRCLLNAMPSYLTPTIDRFLERLEHLFKQLR--------SSPEAVSGFSFAIAALLAGVVVSCPLGIPHAKGLKVLN  546 (2067)
T ss_pred             HHHHHHHHhcCchhhhHHHHHHhccchhHHHHhh--------ccHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHH
Confidence            9999999999999999999999999888876542        2377888999999999999 999999999999999999


Q ss_pred             HHHHHhhccCCChhhHHHHHHHHHHHHHHhhccCChhhHhhcHHHHHHHHHhhcCCCchhhh--hhccc---hhhHHHHH
Q 001368          520 VSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHII--KQHGD---LTSKICVL  594 (1091)
Q Consensus       520 ~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~~~~~Vk~hl~qLLlLWk~~l~~s~~~~~--~~~~e---~~~~L~~r  594 (1091)
                      +|++|||+++||++.+.+|+|+||+||++||+| ||+|+|+|+||+|+||||+|||++|+.|  +.|+|   |++.++.|
T Consensus       547 ~Aedllkt~aqnsr~s~~kt~~gWlLi~aLmtl-gpsv~k~~lprllLlWk~~f~rs~ke~ese~~rgdaFtwq~tl~~~  625 (2067)
T KOG1822|consen  547 FAEDLLKTAAQNSRLSLAKTLAGWLLISALMTL-GPSVVKLQLPRLLLLWKNAFPRSPKELESEESRGDAFTWQLTLEGR  625 (2067)
T ss_pred             HHHHHHHhhccChhHHHHHHHhhHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCcccccccccccchHHHHHHHHhh
Confidence            999999999999999999999999999999996 6899999999999999999999999875  44677   99999999


Q ss_pred             HHHHHHHHHHHHhccCccccccchhhhhHHHHHHHHHHHHHH---HhhhhCCCCChhHHHHHHH--HHHHHhcCCCCCCC
Q 001368          595 STAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYIST---IAAKELPNIKPAMDIFIIR--TLIAYQSLPDPVSY  669 (1091)
Q Consensus       595 ~~AL~aL~sFL~~~lt~d~~~~~~ll~~~~~~L~~aL~~ls~---~~~~~~~~lk~~~~l~~~R--iLq~y~~L~~~~~~  669 (1091)
                      ++||+.|.+|..++  ++..+.+.. .+....+++++++++.   ..+.|+..+|....++|.|  .++.- +|.||..|
T Consensus       626 agaL~~m~~~~s~~--~~~~~e~~~-~k~~~p~~~~l~lls~v~~~lk~yg~~~~~sa~lvrIr~~l~e~l-~llp~~~~  701 (2067)
T KOG1822|consen  626 AGALSYMKSFVSHK--PDSLTESIT-LKFLTPIECALSLLSQVPSVLKAYGNQLKRSALLVRIRAGLYELL-LLLPPSSY  701 (2067)
T ss_pred             hhHHHHHHHHhccC--cchhhHHHH-HhcCCcHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HhCCchhh
Confidence            99999999999986  555444432 3355567788777755   6779999999988888765  44433 35568899


Q ss_pred             CCChHHHHHHHhhhcC--CC-CcccchhhhhhhcccCCcc-cCCCCCCCch--hHHhhhhh-cCCCCCCC----ccccc-
Q 001368          670 KSDHPQLIKLCTTPYR--DA-SACEESSCLRLLLDKRDAW-LGPWIPGRDW--FEDELCAF-QGGKDGLM----PCVWE-  737 (1091)
Q Consensus       670 ~~~~~~LL~~~v~~Fs--d~-~~~~~ss~l~sl~~~~D~~-lG~~l~~~d~--~e~~L~~~-~~~~d~~l----p~l~~-  737 (1091)
                      +.++.++++.++++|+  |+ ...+++++++++++.+|+. .|+|.+++|+  +|+++..+ .....+.+    -++|. 
T Consensus       702 e~~l~~~lr~lvad~tm~dn~~~~ttt~ll~s~~~~~~~ii~g~~i~~t~~~~~e~q~~~~~~~i~~g~le~d~s~ll~~  781 (2067)
T KOG1822|consen  702 EGSLTALLRKLVADLTMSDNLSANTTTELLRSLAFGDDSIITGPWIQATDHRSAEDQLLTPGSDIFSGALEEDLSSLLSL  781 (2067)
T ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHhhhhhccCcccccChhhhhccchhHHHhhccCccccceeeeecCchhhhHH
Confidence            9999999999999998  55 4566788999999999998 9999999996  88885333 33333333    24542 


Q ss_pred             --cc-CCCCCCCCCchhHHHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHHcccchhHHHHHHHHHHH--HHHHHHHHHH
Q 001368          738 --NE-VSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICV--GLLAGLKALL  812 (1091)
Q Consensus       738 --~~-~~~~p~p~p~~tsvVdasi~LF~~vFp~~~~k~q~s~LE~l~~~ik~~k~~~R~~Ai~vNv~~--All~aLk~~~  812 (1091)
                        .. .+.+|+|+|+++++||+|++|||.+|||+++|||+|++||+.+|+++.|+. |+++|++|+++  |++++||+++
T Consensus       782 ~s~~g~~~~p~~lp~~ls~Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~-r~qsV~~~a~t~~al~s~lk~l~  860 (2067)
T KOG1822|consen  782 ISAAGLSSVPYALPLALSLIDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSA-RQQSVQVNAVTWQALLSALKYLA  860 (2067)
T ss_pred             HHhhcccCCCCCCcchhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence              11 345899999999999999999999999999999999999999999999998 99999999999  9999999999


Q ss_pred             hhCC--CCCChHHHHHHHHHHHHHHhcCCcchHHHHHH--Hhhc---------------------ccccCCcchhHHHHH
Q 001368          813 NLRP--QTLGSEVLNSIQAIFLSILAEGDICASQRRAL--LLGD---------------------LTVVTDANYAGSIAL  867 (1091)
Q Consensus       813 ~~~~--~~l~~~v~~~~~~li~~~l~~~d~~~~~r~aa--~l~~---------------------lv~~~dp~~Ra~~aL  867 (1091)
                      +.+.  ..++++|.+...+++.+.+..+++  ..||++  +++|                     +...+||..|.|+.+
T Consensus       861 e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p--~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghsl  938 (2067)
T KOG1822|consen  861 EFKGATSLGPEEVRSSALTLIVNSLINPNP--KLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSL  938 (2067)
T ss_pred             hcccccccCHHHHHHHHHHHHhhhhccCCh--HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            9998  447899999999999999999886  466665  2222                     234699999999999


Q ss_pred             HHHHHHhhcCCcccccchhhHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccCCCCCch
Q 001368          868 AIGCIHRSAGGMALSSLVPATVSSISLLAKTSI-PGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVD  946 (1091)
Q Consensus       868 ALG~I~r~vGgmas~~~l~t~v~iL~sL~~Dp~-P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~  946 (1091)
                      |+|||||||||++++||++|.|+|+++|++|+| |+||.|+||||++++|++|++|+.||++||.++.++++++++++++
T Consensus       939 alg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~e 1018 (2067)
T KOG1822|consen  939 ALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVE 1018 (2067)
T ss_pred             HHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhh
Confidence            999999999999999999999999999999999 7999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHH------HHHHhhCCCCCCchh------hhHhhhc------cccCCCchhHHHHHhHHhhhcccCccchhh
Q 001368          947 LQQGVGRLIN------AIVAVLGPELAPGSI------FFSRCKV------SAWQCSSPKWSVRFTQQLVLFAPQAVSVHS 1008 (1091)
Q Consensus       947 ~~~~igr~l~------alI~~LGPeLq~~s~------~~~~~~~------~~~~~~~~~eai~clQqL~lFAP~~v~~~~ 1008 (1091)
                      ++|++|||++      ++|+++|||||++..      .++.|+.      ++.+..+++++|+|+||+|||||+|+|++.
T Consensus      1019 v~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~ 1098 (2067)
T KOG1822|consen 1019 VHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDS 1098 (2067)
T ss_pred             hhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHH
Confidence            9999999999      999999999998873      4444433      222334479999999999999999999999


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHHHccCchhhh----------------------hhchHHHHHHhhccCCCHHHHH
Q 001368         1009 HVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVI----------------------EERIEGNLFHMLDEETDSEYVK 1066 (1091)
Q Consensus      1009 lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~~v~----------------------~~~le~~Lf~~LD~e~d~~l~~ 1066 (1091)
                      +|+.||.+|+|+|..+|++++.|||||+||++.+|.                      +.|||+.+|+|||+|+|.++++
T Consensus      1099 lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~ 1178 (2067)
T KOG1822|consen 1099 LVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLK 1178 (2067)
T ss_pred             HHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHH
Confidence            999999999999999999999999999999998764                      2599999999999999999998


Q ss_pred             ----HHH-HHhhhhccccccccc
Q 001368         1067 ----SYT-LCLAYFSSFYAFYLE 1084 (1091)
Q Consensus      1067 ----~~~-~~~~~~~~~~~~~~~ 1084 (1091)
                          ++. ..+.++...++-|+.
T Consensus      1179 ~I~~tl~~~~~~~~~~~ls~Wl~ 1201 (2067)
T KOG1822|consen 1179 NILETLSRMLNSLADELLSSWLM 1201 (2067)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHH
Confidence                233 366899999999985

>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1091
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 2e-07
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 2e-04
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 8e-07
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-04
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 8e-04
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 129/1004 (12%), Positives = 276/1004 (27%), Gaps = 94/1004 (9%)

Query: 81   VRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAA-QCLGELYRQFGR 139
             R +A+  +   + K            +   +    + +  +V   A +CLG L  +   
Sbjct: 22   FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE 81

Query: 140  RITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSE--AFRLIMRF 197
                 +++T       M  ++E +R  + + L+  +     +++ SA +     ++  R 
Sbjct: 82   YQVETIVDTLC---TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 138

Query: 198  AIV---DKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAE 254
                   +   V++     +       G  L V    +  T  +  +  P  +VR     
Sbjct: 139  TSAIAKQEDVSVQLEALDIMADMLSRQGGLL-VNFHPSILTCLLPQLTSPRLAVRKRTII 197

Query: 255  ALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRAN----GAKSKNMRVN 310
            ALG L+    N                + L   L ++ ++  TR       A S+     
Sbjct: 198  ALGHLVMSCGNIVFV---------DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 248

Query: 311  LTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADI------FVDSHALACVLYI--- 361
            +       +  +       D EL++Y +Q  +             V +    C+ Y+   
Sbjct: 249  IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 308

Query: 362  --LRIGVTDQMTEPTQRSFLVFLGKQLQAV-----DASPFMKIAALRTLSYTLKTLGEVP 414
                    D+              +          D S  ++ AA + L   + T  E+ 
Sbjct: 309  PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368

Query: 415  SEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEV-----DPTCVSGLITYGVTTLNAL 469
             EF + +   +++      + V+ +      +L +         C    +  G T L  L
Sbjct: 369  PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTML 428

Query: 470  RENV-SFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTES 528
            +  V +  K     ++  S+  +      L  +   LP      +P LV  +   +  +S
Sbjct: 429  QSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS 488

Query: 529  SRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLT 588
            S + L     K      L  +L +   +     V  ++                      
Sbjct: 489  SSSNL-----KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVG-------------D 530

Query: 589  SKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPA 648
                + S A+      V+  + P    S     P +  L      I  + A ++      
Sbjct: 531  PFYKITSEALLVTQQLVKV-IRPLDQPSSFDATPYIKDLFTCT--IKRLKAADIDQEVKE 587

Query: 649  MDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLG 708
              I  +  +I            +     ++         +  +  +   +        L 
Sbjct: 588  RAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTL--IAGSPLKIDLR 645

Query: 709  PWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETI----KKTLVNQMLLCFGIM 764
            P +         L +F              ++ +    + +      +L   M+      
Sbjct: 646  PVLG---EGVPILASFLRKNQ------RALKLGTLSALDILIKNYSDSLTAAMIDAVLDE 696

Query: 765  FASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVL 824
                 S   + +  +    L    K   + +S++ I   +   L  L+ L    L     
Sbjct: 697  LPPLISESDMHVSQMAISFLTTLAKV--YPSSLSKISGSI---LNELIGLVRSPLLQGGA 751

Query: 825  NSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSL 884
             S    F   L            LL      V   + A +   +   I +    +  +  
Sbjct: 752  LSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACP 811

Query: 885  VPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGW 944
                      +                LL++   G       Q  L   +    S  +  
Sbjct: 812  KEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEE 871

Query: 945  VDLQ--QGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQ 1002
            V       +G +    +    P +        + +           S      L  +   
Sbjct: 872  VKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN 931

Query: 1003 AVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEE 1046
                      LL      +   R++    L  L   DP++++  
Sbjct: 932  I------WALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPR 969
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1091
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.65
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.6
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.56
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.54
1qgr_A876 Protein (importin beta subunit); transport recepto 99.52
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.49
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.26
1qgr_A876 Protein (importin beta subunit); transport recepto 99.13
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.11
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.08
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.07
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.46
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.36
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.31
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.28
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.18
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.13
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.04
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.02
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.99
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.95
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.95
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.95
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.88
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.87
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 97.87
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.86
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 97.79
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 97.75
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 97.74
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.67
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.59
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 97.59
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.54
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.46
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 97.43
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 97.32
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 97.32
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.25
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.23
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 97.22
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.22
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 97.17
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.15
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.02
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 96.98
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 96.87
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 96.84
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.84
2x19_B963 Importin-13; nuclear transport, protein transport; 96.81
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.74
2x1g_F971 Cadmus; transport protein, developmental protein, 96.74
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.59
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 96.46
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 96.44
3a6p_A1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 96.43
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 96.38
2x19_B963 Importin-13; nuclear transport, protein transport; 96.38
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 96.33
2x1g_F971 Cadmus; transport protein, developmental protein, 96.28
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 96.06
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 96.03
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 95.96
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 95.92
3grl_A651 General vesicular transport factor P115; vesicle t 95.91
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 95.65
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 95.55
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 95.36
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 95.03
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 94.12
3nmz_A458 APC variant protein; protein-protein complex, arma 94.02
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 93.94
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 93.89
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 93.85
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 93.36
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 92.7
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 92.21
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 92.0
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 91.72
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 91.46
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 90.98
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 90.86
2db0_A253 253AA long hypothetical protein; heat repeats, hel 87.51
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 86.23
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 84.98
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 84.22
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
Probab=99.65  E-value=3.4e-10  Score=148.31  Aligned_cols=886  Identities=14%  Similarity=0.137  Sum_probs=467.8

Q ss_pred             HHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchh
Q 001368           22 LESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISV  101 (1091)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~l  101 (1091)
                      |..+...  =++||+-.-+.-+.+|.+.+..-....-....+++...|++.+. .+-+.+|+..++||..+...-....+
T Consensus         8 l~~lL~~--l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~~~   84 (1230)
T 1u6g_C            8 ISNLLEK--MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQV   84 (1230)
T ss_dssp             HHHHHHH--TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHh--cCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence            4444444  34688888888888888877432111111344567777777776 56788899999999999975433222


Q ss_pred             HHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH------HhhcHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHH
Q 001368          102 YSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR------ITSGLLETTIIAAKLMK-FNEEFVRQEALLLLQNA  174 (1091)
Q Consensus       102 fdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~------l~s~~~e~~~~llK~lK-~~~a~~R~~~l~~L~ki  174 (1091)
                      =.-+..|.+.+.   ++++..+.+|..+||.+.+.+|..      .....++.+..+++.++ +.+...|..++.+|.++
T Consensus        85 ~~i~~~Ll~~l~---d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           85 ETIVDTLCTNML---SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  161 (1230)
T ss_dssp             HHHHHHHHHHTT---CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            222333333332   445566668999999999998875      44568899999999998 46788999999999999


Q ss_pred             HhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCC-ChhHHHHHH
Q 001368          175 LEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDP-IASVRDAFA  253 (1091)
Q Consensus       175 l~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s-~~~vR~a~A  253 (1091)
                      ++..|.... ....++... +-..+.|....||..|++|+..++...+.-+    ++.+...+++.+.+. +..+|..+.
T Consensus       162 ~~~~~~~l~-~~~~~ll~~-l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          162 LSRQGGLLV-NFHPSILTC-LLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHTCSSCT-TTHHHHHHH-HGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHhHhHHH-HHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccCCchhHHHHHH
Confidence            998886663 366788884 5556889889999999999999987642222    344444444444333 357899999


Q ss_pred             HHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchh
Q 001368          254 EALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSEL  333 (1091)
Q Consensus       254 ~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~  333 (1091)
                      ++++.+... . ++        +-.   ..+++.+. .+...+..    ...++|-....++..+....|..       +
T Consensus       236 ~~l~~l~~~-~-~~--------~~~---~~l~~l~~-~ll~~l~d----~~~~vR~~a~~~l~~l~~~~~~~-------~  290 (1230)
T 1u6g_C          236 QCIAAISRQ-A-GH--------RIG---EYLEKIIP-LVVKFCNV----DDDELREYCIQAFESFVRRCPKE-------V  290 (1230)
T ss_dssp             HHHHHHHHH-S-SG--------GGT---TSCTTHHH-HHHHHHSS----CCTTTHHHHHHHHHHHHHCTTCC-------C
T ss_pred             HHHHHHHHH-h-HH--------HHH---HHHHHHHH-HHHHHhcC----CCHHHHHHHHHHHHHHHHHChHH-------H
Confidence            999998743 2 11        000   12334443 33333221    34678888888888888876653       2


Q ss_pred             hHHHHHHHHHhcc----CCCc--------------------------------c--HHHHHHHHHHHHHhhh--------
Q 001368          334 QDYALQVMDMLRA----DIFV--------------------------------D--SHALACVLYILRIGVT--------  367 (1091)
Q Consensus       334 ~~y~~~i~~ll~~----~~~~--------------------------------~--~~~r~~v~~ILr~~i~--------  367 (1091)
                      ..|+..++..+..    ++.+                                |  ...|++..-.|...+.        
T Consensus       291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~  370 (1230)
T 1u6g_C          291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE  370 (1230)
T ss_dssp             HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence            3454444443321    0000                                0  0113332222222111        


Q ss_pred             ----------ccCCc---HHHHHHHHH-----------------------------------------HHhhcccCCCCh
Q 001368          368 ----------DQMTE---PTQRSFLVF-----------------------------------------LGKQLQAVDASP  393 (1091)
Q Consensus       368 ----------~~LgE---~~Q~~~~~~-----------------------------------------l~~~~~~~~~s~  393 (1091)
                                ..+++   .-+..++..                                         +.+.+  .+.+.
T Consensus       371 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l--~~~~~  448 (1230)
T 1u6g_C          371 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQM--KEKSV  448 (1230)
T ss_dssp             HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHT--TCSCH
T ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHh--ccCCH
Confidence                      11211   111111111                                         11111  23444


Q ss_pred             hHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHHHhC-Cc----chhhHHHHHHHHH
Q 001368          394 FMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQ--LVRIEAALTLRALAEVD-PT----CVSGLITYGVTTL  466 (1091)
Q Consensus       394 ~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~--svRi~AA~cLr~~~~a~-P~----~~~~ll~~~~~~L  466 (1091)
                      ..-..++..++.++..++....+..+.+.+.++..|..++.  .+|.+|+.++..+.... |.    ++.++++.++..+
T Consensus       449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l  528 (1230)
T 1u6g_C          449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV  528 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence            44557888899999998776667788999999999999874  89999999999998754 33    3444555444433


Q ss_pred             HhhhhhhccccCCcccchhhhhchHH-HHHHHHHhhcCC---CC--CccCCchhHHHHHHHHHHhhccCCChhhHHHHHH
Q 001368          467 NALRENVSFEKGSSLMVELDSLHGQA-TVVAALIFISPK---LP--LGYPARLPKLVLEVSKKMLTESSRNTLAATVEKE  540 (1091)
Q Consensus       467 ~~~~~~l~~~~~~~~~~~~~~~~G~a-~alAALl~~~~~---~p--Lgvp~~~~~~V~~~A~~LLk~~~~~~~~a~~~~q  540 (1091)
                      +           ++.   + ++...+ .+++.++.....   .+  -..  .....++..-.+.++....+.   ..|..
T Consensus       529 ~-----------d~~---~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~--~~~~~ll~~ll~~l~~~d~~~---~vr~~  588 (1230)
T 1u6g_C          529 G-----------DPF---Y-KITSEALLVTQQLVKVIRPLDQPSSFDAT--PYIKDLFTCTIKRLKAADIDQ---EVKER  588 (1230)
T ss_dssp             T-----------CSS---H-HHHHHHHHHHHHHHHHHCCSSSCCCCCCH--HHHHHHHHHHHHHHSCSSSCH---HHHHH
T ss_pred             c-----------ccc---h-HHHHHHHHHHHHHHHHhcCcccccccchH--HHHHHHHHHHHHHHhccCCCH---HHHHH
Confidence            2           111   1 111112 244555544332   00  011  123556666566665433322   23333


Q ss_pred             HHHHHHHHhhccCChhhHhhcHHHHHHHHHhhcCCCchhhh--h-------h--ccc---hh-------------hHHHH
Q 001368          541 AGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHII--K-------Q--HGD---LT-------------SKICV  593 (1091)
Q Consensus       541 agWiLi~sLmtl~~~~~Vk~hl~qLLlLWk~~l~~s~~~~~--~-------~--~~e---~~-------------~~L~~  593 (1091)
                      +. -.+|.++...|+.+ ..++++++-.-...+........  +       .  ..+   |.             -+-..
T Consensus       589 a~-~~lg~L~~~~g~~~-~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~  666 (1230)
T 1u6g_C          589 AI-SCMGQIICNLGDNL-GSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRAL  666 (1230)
T ss_dssp             HH-HHHHHHHHHTGGGC-CTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHH
T ss_pred             HH-HHHHHHHHHhCchh-hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHH
Confidence            33 45566665556554 56788888777666642110000  0       0  000   00             01235


Q ss_pred             HHHHHHHHHHHHHhccCccccccchhhhhHHHHHHHHHHHHHHHhhhhCCCCChhHHHHHHHHHHHHhcCCC--CCCCCC
Q 001368          594 LSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPD--PVSYKS  671 (1091)
Q Consensus       594 r~~AL~aL~sFL~~~lt~d~~~~~~ll~~~~~~L~~aL~~ls~~~~~~~~~lk~~~~l~~~RiLq~y~~L~~--~~~~~~  671 (1091)
                      |..|+.|+..++.+.  ++....    ..+...+    .       ...|-+...+.-.....++++..+..  |.....
T Consensus       667 r~~a~~al~~l~~~~--~~~~~~----~~v~~~l----~-------~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~  729 (1230)
T 1u6g_C          667 KLGTLSALDILIKNY--SDSLTA----AMIDAVL----D-------ELPPLISESDMHVSQMAISFLTTLAKVYPSSLSK  729 (1230)
T ss_dssp             HHHHHHHHHHHHHHC--CTTCCH----HHHHHHH----T-------TCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGG
T ss_pred             HHHHHHHHHHHHhcc--cccCCH----HHHHHHH----H-------HHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHH
Confidence            556666666555543  110000    0000001    0       00011111111112234444444332  222211


Q ss_pred             ChHHHHHHHhhhcCCCCccc--chhh---hhhhcccCCcccCCCCCCCchhHHhhhhhcCCCCCCCcccccccCCCCCCC
Q 001368          672 DHPQLIKLCTTPYRDASACE--ESSC---LRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQP  746 (1091)
Q Consensus       672 ~~~~LL~~~v~~Fsd~~~~~--~ss~---l~sl~~~~D~~lG~~l~~~d~~e~~L~~~~~~~d~~lp~l~~~~~~~~p~p  746 (1091)
                      ....++..++....++....  ..++   .+.+...++        ....+++-+......       ++.      +.+
T Consensus       730 ~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~--------~~~~~~~ll~~l~~~-------~~~------~~~  788 (1230)
T 1u6g_C          730 ISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT--------NNLGYMDLLRMLTGP-------VYS------QST  788 (1230)
T ss_dssp             TTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCC--------TTCSHHHHHHHHSTT-------TTT------C--
T ss_pred             hHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCC--------CCCCHHHHHHHHhcc-------ccC------CCC
Confidence            22234444444444332110  0111   112222111        011122222111000       000      001


Q ss_pred             CCchhHHHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHH
Q 001368          747 ETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNS  826 (1091)
Q Consensus       747 ~p~~tsvVdasi~LF~~vFp~~~~k~q~s~LE~l~~~ik~~k~~~R~~Ai~vNv~~All~aLk~~~~~~~~~l~~~v~~~  826 (1091)
                      ......+...+-+.+|.+.-..++..+ .+++++...+++.+.   ......+.+.    ++..+.....-...++    
T Consensus       789 ~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~l~----~l~~~g~~~~~~~~~~----  856 (1230)
T 1u6g_C          789 ALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFIQDVKNSRS---TDSIRLLALL----SLGEVGHHIDLSGQLE----  856 (1230)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTTTTTTTTTC---CHHHHHHHHH----HHHHHHHHSCCCSCTH----
T ss_pred             ccccchhhHHHHHHHHHHHHhcchhhH-HHHHHHHHHhCCCCc---cHHHHHHHHH----HHHHhcccCCCccccc----
Confidence            002233445566777777766666655 566666555554321   1222233332    2222222111101133    


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHhhcccccCCcchhHHHHHHHHHHHhhcCCcccccchhhHHHHHHHHhcCCCCchhHH
Q 001368          827 IQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMW  906 (1091)
Q Consensus       827 ~~~li~~~l~~~d~~~~~r~aa~l~~lv~~~dp~~Ra~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL~~Dp~P~Vh~W  906 (1091)
                      +++.+.+.+.+++.  ..|.+                 .+-|||.+.  .|      +++..+..++...++. |.+++.
T Consensus       857 l~~~~~~~l~~~~~--~Vr~a-----------------Aa~aLg~l~--~~------~~~~~lp~ll~~l~~~-~~~~~~  908 (1230)
T 1u6g_C          857 LKSVILEAFSSPSE--EVKSA-----------------ASYALGSIS--VG------NLPEYLPFVLQEITSQ-PKRQYL  908 (1230)
T ss_dssp             HHHHHHHGGGCSCH--HHHHH-----------------HHHHHHHHH--HH------THHHHHHHHHHHHHSC-GGGHHH
T ss_pred             HHHHHHHHhCCCCH--HHHHH-----------------HHHHhHHHh--cc------CHHHHHHHHHHHHhcc-chhhHH
Confidence            34555555555432  34444                 677778775  22      3555666666665544 788999


Q ss_pred             HHHHHHHHHHHhC-CCcccchhhhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhhCCCCCCchhhhHhhhccccCCCc
Q 001368          907 SLHGLLLTIEAAG-FSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSS  985 (1091)
Q Consensus       907 aL~aL~li~dsaG-~~f~~~v~stL~ll~~lll~~~~~~~~~~~~igr~l~alI~~LGPeLq~~s~~~~~~~~~~~~~~~  985 (1091)
                      .++||.-+++.++ -...+|++..+..+++.+-   .....++...++|+..++....      ..++-... ..+.+..
T Consensus       909 ~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~---~~~~~~r~~~a~~lg~l~~~~~------~~l~p~l~-~~l~~~~  978 (1230)
T 1u6g_C          909 LLHSLKEIISSASVVGLKPYVENIWALLLKHCE---CAEEGTRNVVAECLGKLTLIDP------ETLLPRLK-GYLISGS  978 (1230)
T ss_dssp             HHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCC---CSSTTHHHHHHHHHHHHHHSSG------GGTHHHHT-TTSSSSC
T ss_pred             HHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhc---CcchhhHHHHHHHHhhhhccCh------HHHHHHHH-HHhcCCC
Confidence            9999999998754 3455665554443333221   1223467788888888877632      12222111 1222222


Q ss_pred             ---hhHHHHHhHHhhhcccCccc--hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCchhhhh--hchHHHHHHhh
Q 001368          986 ---PKWSVRFTQQLVLFAPQAVS--VHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIE--ERIEGNLFHML 1056 (1091)
Q Consensus       986 ---~~eai~clQqL~lFAP~~v~--~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~~v~~--~~le~~Lf~~L 1056 (1091)
                         ..-++..+..+.-..|..++  +..+++.|...|..+++..|++|+.||..+++..+..+.+  ..+-..|+..+
T Consensus       979 ~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~ 1056 (1230)
T 1u6g_C          979 SYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNET 1056 (1230)
T ss_dssp             HHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHh
Confidence               15566667777666666654  3444566667788999999999999999999998876643  24555555554
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1091
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-07
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-05
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 0.001
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.002
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-07
 Identities = 120/1074 (11%), Positives = 270/1074 (25%), Gaps = 106/1074 (9%)

Query: 32   QSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLIL--GARRPVRHLASVAM 89
             S D    F   +DL++ +    K+SI L        +  +L L       V++LA   +
Sbjct: 13   TSSDKDFRFMATNDLMTELQ---KDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 69

Query: 90   GRIISKGDNISVYSRVSSLQGFLSDGK--------------------------------- 116
            G ++SK     V + V +L   +   K                                 
Sbjct: 70   GPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK 129

Query: 117  ------------KSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVR 164
                        + +      A   + ++  + G  + +            +      VR
Sbjct: 130  KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVR 189

Query: 165  QEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224
            +  ++ L + +   G       + +    ++     + S        +C+ A +   G  
Sbjct: 190  KRTIIALGHLVMSCG----NIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 245

Query: 225  LGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKL 284
            +G   L+      VK        +R+   +A  S +                  P    +
Sbjct: 246  IGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY----------PHVSTI 294

Query: 285  EGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDML 344
                 ++L          + ++             Q    +Y   D             L
Sbjct: 295  INICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCL 354

Query: 345  RADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLS 404
             A +      L      +   +  +  E  +          L  +  +  ++       +
Sbjct: 355  DAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDA 414

Query: 405  YTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVT 464
              ++      +  +  + + V A      +            L E+       L  +   
Sbjct: 415  --MEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 472

Query: 465  TLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKM 524
             +  +  +++ +  SS +            +  ++            +     +      
Sbjct: 473  LVPGIIFSLNDKSSSSNLKIDALSC-----LYVILCNHSPQVFHPHVQALVPPVVACVGD 527

Query: 525  LTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQH 584
                  +      ++    +      +S         +F            + E   +  
Sbjct: 528  PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAI 587

Query: 585  GDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPN 644
              +   IC L   + +              N    L  V      A S +       L  
Sbjct: 588  SCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGE 647

Query: 645  IKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRD 704
              P +  F+ +   A +      +  +    +     +               L+ +   
Sbjct: 648  GVPILASFLRKNQRALKL----GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDM 703

Query: 705  AWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIM 764
                  I           +      G +       V S          +++         
Sbjct: 704  HVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTG 763

Query: 765  FASQHSSGMLSLL--GIIEQCLKAGKKQSWHAASVTNICVGLLAG---LKALLNLRPQTL 819
              +     +L +L   +  Q      KQS+++ +     +           +        
Sbjct: 764  TNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVK 823

Query: 820  GSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGM 879
             S   +SI+ + L  L E          L L  + +   ++ +  +  A      S    
Sbjct: 824  NSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVG 883

Query: 880  ALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFS-FVSHVQATLGLAMEILL 938
             L   +P  +  I     TS P  Q   LH L   I +A       +V+    L ++   
Sbjct: 884  NLPEYLPFVLQEI-----TSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCE 938

Query: 939  SEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFT----- 993
              E      +  V   +  +  +    L P                S     R +     
Sbjct: 939  CAEE---GTRNVVAECLGKLTLIDPETLLP--RLKGYLI-------SGSSYARSSVVTAV 986

Query: 994  QQLVLFAPQAVS--VHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIE 1045
            +  +   PQ +   + + +   L TL      +R +A+ T        P  + +
Sbjct: 987  KFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRD 1040
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1091
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.73
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.67
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.13
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.09
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.02
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.01
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.76
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.72
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.59
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.54
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.03
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 97.99
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.85
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 97.57
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.23
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.09
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 96.92
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 96.6
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.44
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 96.19
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.08
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 95.6
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 95.59
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 95.14
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 94.65
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 94.43
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 93.9
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 91.76
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 85.0
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 84.58
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 84.48
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 83.8
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.7e-12  Score=164.60  Aligned_cols=505  Identities=13%  Similarity=0.075  Sum_probs=290.6

Q ss_pred             CCCCchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHh
Q 001368           32 QSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGF  111 (1091)
Q Consensus        32 ~~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~i  111 (1091)
                      ++|||=+=|--+.+|.+.+....-.-=...++++.+.|++.+.. +-+.+|+++.+||+.+..+.....+-..++.|...
T Consensus        13 ~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D-~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~   91 (1207)
T d1u6gc_          13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTN   91 (1207)
T ss_dssp             TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHH
Confidence            66777777777788888774322111123467789999998764 56889999999999999998887777777777776


Q ss_pred             hhcCCCCChHhHHHHHHHHHHHHHHHhhHHhh--cHHHHHHH----HHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCCch
Q 001368          112 LSDGKKSEPQKVAGAAQCLGELYRQFGRRITS--GLLETTII----AAKLMKF-NEEFVRQEALLLLQNALEGSGGSAAA  184 (1091)
Q Consensus       112 L~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s--~~~e~~~~----llK~lK~-~~a~~R~~~l~~L~kil~g~g~~~~~  184 (1091)
                      +.++  ++..+. .+..||..+.+.+++...+  .....+..    +...+.+ .+..+|.+++..+..+++..|... .
T Consensus        92 l~~~--~~~~r~-~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l-~  167 (1207)
T d1u6gc_          92 MLSD--KEQLRD-ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLL-V  167 (1207)
T ss_dssp             TTCS--SSHHHH-HHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSC-T
T ss_pred             hcCC--chhhhH-HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhh-H
Confidence            6422  223344 6778999888877654322  22333333    3333333 467899999999999999999776 4


Q ss_pred             hHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhc-cCCChhHHHHHHHHHHHHHHhc
Q 001368          185 SAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAI-EDPIASVRDAFAEALGSLLALG  263 (1091)
Q Consensus       185 ~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~l-e~s~~~vR~a~A~~Lg~lLa~~  263 (1091)
                      ..+.++.+. ....++|....||..|+.|+..+....    ....++.+..-+++.+ ++.+..+|+.+.+++|.+.-..
T Consensus       168 ~~~~~il~~-l~~~l~~~~~~vR~~A~~~l~~l~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~  242 (1207)
T d1u6gc_         168 NFHPSILTC-LLPQLTSPRLAVRKRTIIALGHLVMSC----GNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA  242 (1207)
T ss_dssp             TTHHHHHHH-HGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence            568899994 667788988999999999999998764    2233444555555544 4567778999999999987432


Q ss_pred             cCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHH
Q 001368          264 MNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDM  343 (1091)
Q Consensus       264 ~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~l  343 (1091)
                        +.        +   -.+.+++.+. .+.. +++.   ...++|-+...++..|+...+..       ...|...+++.
T Consensus       243 --~~--------~---~~~~l~~i~~-~l~~-~l~~---~~~~~r~~al~~l~~l~~~~~~~-------~~~~~~~ii~~  297 (1207)
T d1u6gc_         243 --GH--------R---IGEYLEKIIP-LVVK-FCNV---DDDELREYCIQAFESFVRRCPKE-------VYPHVSTIINI  297 (1207)
T ss_dssp             --SG--------G---GTTSCTTHHH-HHHH-HHSS---CCTTTHHHHHHHHHHHHHCTTCC-------CHHHHHHHHHH
T ss_pred             --ch--------h---hHHHHHHHHH-HHHH-HhcC---ccHHHHHHHHHHHHHHHHhChhh-------hhhhHHHHHHH
Confidence              11        0   0112334442 2222 2222   35789999999999998877652       34566666666


Q ss_pred             hccCCCccHHHH--HHHHHHHHHhhhccCCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHH
Q 001368          344 LRADIFVDSHAL--ACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVL  421 (1091)
Q Consensus       344 l~~~~~~~~~~r--~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l  421 (1091)
                      +...-..|++..  .....+ .. ......+... ........  ...+.+...-..+.+.+..++..-++...+..+.+
T Consensus       298 ~l~~l~~dp~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~~~--~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~  372 (1207)
T d1u6gc_         298 CLKYLTYDPNYNYDDEDEDE-NA-MDADGGDDDD-QGSDDEYS--DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTV  372 (1207)
T ss_dssp             HTTCCCCC-----------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTT
T ss_pred             HHHHHhcCcchhhhhHHHHH-hh-hhhhccchhh-hhHHHHHh--hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            553333333211  000000 00 0000000000 00000000  01233433444788888888887777666777778


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcch-------------------hhHHHHHHHHHHhhhhhhccccCCccc
Q 001368          422 DSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCV-------------------SGLITYGVTTLNALRENVSFEKGSSLM  482 (1091)
Q Consensus       422 ~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~-------------------~~ll~~~~~~L~~~~~~l~~~~~~~~~  482 (1091)
                      .+.++..+.+++..||..+..++..+....+...                   .+.++.++..+.....      ...  
T Consensus       373 ~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~------~~~--  444 (1207)
T d1u6gc_         373 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK------EKS--  444 (1207)
T ss_dssp             HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTT------CSC--
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhc------CCc--
Confidence            8999999999999999999999999876544322                   1222223333322211      101  


Q ss_pred             chhhhhchHHHHHHHHHhhcCCCCCccCCchhHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHhhccCChhhHhhcH
Q 001368          483 VELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQV  562 (1091)
Q Consensus       483 ~~~~~~~G~a~alAALl~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~~~~~Vk~hl  562 (1091)
                        +..-.+....+..+....+..  ..  +-...++..-.+.++.....   ...+..+.+. ++.++.-.+++....|+
T Consensus       445 --~~~r~~~~~~l~~l~~~~~~~--l~--~~l~~~~~~i~~~l~~~~~~---~~~~~~al~~-l~~l~~~~~~~~~~~~~  514 (1207)
T d1u6gc_         445 --VKTRQCCFNMLTELVNVLPGA--LT--QHIPVLVPGIIFSLNDKSSS---SNLKIDALSC-LYVILCNHSPQVFHPHV  514 (1207)
T ss_dssp             --HHHHHHHHHHHHHHHHHSTTT--TG--GGHHHHHHHHHHHTTCSSSC---HHHHHHHHHH-HHHHHHSSCGGGGHHHH
T ss_pred             --hhHHHHHHHHHHHHHHHcchH--HH--HhhHhhHHHHHHHHhcccch---hHHHHHHHHH-HHHHHHhccHHHHHHHH
Confidence              121234445556666655432  11  22333444333344433332   2344555554 44455435667777777


Q ss_pred             HHHHHHHHhhcCCCchhhhhhccchhhHHHHHHHHHHHHHHHHHh
Q 001368          563 FDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRC  607 (1091)
Q Consensus       563 ~qLLlLWk~~l~~s~~~~~~~~~e~~~~L~~r~~AL~aL~sFL~~  607 (1091)
                      ..+...+..++...             .-.++..|+.++..+.+.
T Consensus       515 ~~l~~~~~~~~~~~-------------~~~i~~~al~~~~~l~~~  546 (1207)
T d1u6gc_         515 QALVPPVVACVGDP-------------FYKITSEALLVTQQLVKV  546 (1207)
T ss_dssp             TTTHHHHHHHHTCS-------------SHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHccc-------------cHHHHHHHHHHHHHHHHH
Confidence            77776666655221             112455566666665554
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure