Citrus Sinensis ID: 001378
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1090 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SY59 | 1188 | NF-X1-type zinc finger pr | yes | no | 0.927 | 0.851 | 0.677 | 0.0 | |
| B1AY10 | 1114 | Transcriptional repressor | yes | no | 0.735 | 0.719 | 0.369 | 1e-133 | |
| Q12986 | 1120 | Transcriptional repressor | yes | no | 0.741 | 0.721 | 0.362 | 1e-130 | |
| A6QLA0 | 1116 | Transcriptional repressor | yes | no | 0.725 | 0.708 | 0.358 | 1e-130 | |
| Q18034 | 1119 | Transcriptional repressor | yes | no | 0.753 | 0.733 | 0.333 | 1e-118 | |
| P40798 | 1106 | Protein shuttle craft OS= | yes | no | 0.665 | 0.655 | 0.334 | 1e-114 | |
| O74853 | 1077 | FKBP12-associated protein | yes | no | 0.738 | 0.747 | 0.318 | 1e-113 | |
| Q54BK0 | 1506 | Transcriptional repressor | yes | no | 0.483 | 0.349 | 0.380 | 1e-109 | |
| P53971 | 965 | FKBP12-associated protein | yes | no | 0.623 | 0.704 | 0.306 | 4e-80 | |
| Q9FFK8 | 883 | NF-X1-type zinc finger pr | no | no | 0.494 | 0.610 | 0.335 | 3e-71 |
| >sp|Q9SY59|NFXL1_ARATH NF-X1-type zinc finger protein NFXL1 OS=Arabidopsis thaliana GN=NFXL1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1429 bits (3698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/1074 (67%), Positives = 834/1074 (77%), Gaps = 63/1074 (5%)
Query: 50 RNMPTPDDNQHSRNIAPRVQNGQFTNHHRG-----------RARGENQDKKLPK------ 92
RN + +Q S NI P N Q N+ G R R NQ K++ K
Sbjct: 141 RNNAPENQHQRSDNIGPPPPNRQRRNNASGTLPDNRQRVASRTRPVNQGKRVAKEENVVL 200
Query: 93 -DLDLPQLLQEIQDKLMKSKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTS 151
D +LPQL+QE+Q+KL+KS +ECMICYD V RSA IWSCSSC+SIFH++CIK+WARAPTS
Sbjct: 201 TDPNLPQLVQELQEKLVKSSIECMICYDKVGRSANIWSCSSCYSIFHINCIKRWARAPTS 260
Query: 152 ADLSAERSQGFNWRCPGCQSVQLTSSKEIRYVCFCGKRTDPTSDFYLTPHSCGEPCGKPL 211
DL AE++QG NWRCPGCQSVQLTSSKEI Y CFCGKR DP SD YLTPHSCGEPCGKPL
Sbjct: 261 VDLLAEKNQGDNWRCPGCQSVQLTSSKEISYRCFCGKRRDPPSDPYLTPHSCGEPCGKPL 320
Query: 212 ESKISSAGGSEEDLCPHKCVLQCHPGPCPPCKAFAPPRLCPCGKKMITTRCFDRKSVLTC 271
E + + A +EEDLCPH CVLQCHPGPCPPCKAFAPPR CPCGKKM+TTRC +R+S L C
Sbjct: 321 EKEFAPAETTEEDLCPHVCVLQCHPGPCPPCKAFAPPRSCPCGKKMVTTRCSERRSDLVC 380
Query: 272 GQHCNKHLECWRHKCEKICHVGPCGPCRVLVNASCFCKKKVEVVLCGDMAVKGEVKAEAG 331
GQ C+K L C RH+CE+ CHVGPC PC+VLVNA+CFCKKKVE V+CGDM VKGE+KAE G
Sbjct: 381 GQRCDKLLSCGRHQCERTCHVGPCDPCQVLVNATCFCKKKVETVICGDMNVKGELKAEDG 440
Query: 332 VFSCSSTCGKKLSCGHHSCGEICHPGPCGDCELLPSKIKSCFCGKMSLQEQ-RKSCLDPI 390
V+SCS CGK L CG+H C E+CHPGPCGDC+LLPS++K+C+CG L+EQ R+SCLDPI
Sbjct: 441 VYSCSFNCGKPLGCGNHFCSEVCHPGPCGDCDLLPSRVKTCYCGNTRLEEQIRQSCLDPI 500
Query: 391 PACSEKCGKPLACGLHYCDELCHAGNCPPCLAAVTQKCRCGSTSRNVECYRTTG--GENF 448
P+CS C K L C LH C+E+CHAG+CPPCL V QKCRCGSTSR VECY TT E F
Sbjct: 501 PSCSNVCRKLLPCRLHTCNEMCHAGDCPPCLVQVNQKCRCGSTSRAVECYITTSSEAEKF 560
Query: 449 TCEKACGRKKNCGRHRCSERCCP-LSSSNSLLSGDWDPHFCQMACGKKLRCGQHSCESLC 507
C K CGRKKNCGRHRCSERCCP L+ + LSGDWDPH CQ+ C KKLRCGQHSCESLC
Sbjct: 561 VCAKPCGRKKNCGRHRCSERCCPLLNGKKNDLSGDWDPHVCQIPCQKKLRCGQHSCESLC 620
Query: 508 HSGHCPPCLETIFTDLTCACGRTSFPPPLPCGTPPPSCQLPCSVPQPCGHSASHSCHFGD 567
HSGHCPPCLE IFTDLTCACGRTS PPPL CGTP PSCQLPC +PQPCGHS +H CHFGD
Sbjct: 621 HSGHCPPCLEMIFTDLTCACGRTSIPPPLSCGTPVPSCQLPCPIPQPCGHSDTHGCHFGD 680
Query: 568 CPPCSVPIAKECIGGHVVLRNVPCGSKDIRCNKLCGKTRQCGMHACGRTCHPPPCDTACN 627
CPPCS P+ K+C+GGHVVLRN+PCG KDIRC K+CGKTR+CGMHAC RTCHP PCD+
Sbjct: 681 CPPCSTPVEKKCVGGHVVLRNIPCGLKDIRCTKICGKTRRCGMHACARTCHPEPCDSFNE 740
Query: 628 SEPGSKASCGQVCGAPRRDCRHTCTALCHPSALCPDVRCEFPFTITCSCGRITASVPCDA 687
SE G + +C Q CGAPR DCRHTC ALCHPSA CPD+RCEF TITCSCGRITA+VPCDA
Sbjct: 741 SEAGMRVTCRQKCGAPRTDCRHTCAALCHPSAPCPDLRCEFSVTITCSCGRITATVPCDA 800
Query: 688 GGSSSGYSSDTVY-----EASIVQKLPAPLQPVESTGKKIPLGQRKLMCDDECAKLERKR 742
GG S+ S+ VY EAS++QKLPAPLQPVES+G +IPLGQRKL CDDECAKLERKR
Sbjct: 801 GGRSANGSN--VYCAAYDEASVLQKLPAPLQPVESSGNRIPLGQRKLSCDDECAKLERKR 858
Query: 743 VLADAFEITTPNLDALHFGE-SAVTELLADLYRRDPKWVLSVEERCKFLVLGKNRGSTNA 801
VL DAF+IT PNL+ALHF E SA+TE+++DLYRRDPKWVL+VEERCKFLVLGK RGST+A
Sbjct: 859 VLQDAFDITPPNLEALHFSENSAMTEIISDLYRRDPKWVLAVEERCKFLVLGKARGSTSA 918
Query: 802 LKVHVFCPMLKDKRDAVRLIAERWKLAVNPAGWEPKRFIVVHVTPKSKPPPRVIGVK-GA 860
LKVH+FCPM KDKRD VRLIAERWKL V+ AGWEPKRF VVHVT KSKPP R+IG + GA
Sbjct: 919 LKVHIFCPMQKDKRDTVRLIAERWKLGVSNAGWEPKRFTVVHVTAKSKPPTRIIGARGGA 978
Query: 861 TTVNAPHAPVFDPLVDMDPRLVVSFLDLPRESDISALVLRFGGECELVWLNDKNALAVFS 920
++ PH P +D LVDMDP LVVSFLDLPRE++ISALVLRFGGECELVWLNDKNALAVF
Sbjct: 979 ISIGGPHPPFYDSLVDMDPGLVVSFLDLPREANISALVLRFGGECELVWLNDKNALAVFH 1038
Query: 921 DPARAATATRRLDHGSVYYGAVVVQNVG-APSTANAWGG-PGTVKEVGAALSSQRGNPWK 978
D ARAATA RRL+HGSVY+GAVVVQ+ G +PS N WG PG+ +A +GNPW+
Sbjct: 1039 DHARAATAMRRLEHGSVYHGAVVVQSGGQSPSLNNVWGKLPGS-----SAWDVDKGNPWR 1093
Query: 979 KAVVQEMAWREDSWGEEESSAG--SGDVQASAWKNKE--APIVASINRWSVLDSETSSYS 1034
+AV+QE +DSWG E+S G S D QASA ++ + +PIV S+NRWSVL+ + +S S
Sbjct: 1094 RAVIQES---DDSWGAEDSPIGGSSTDAQASALRSAKSNSPIVTSVNRWSVLEPKKASTS 1150
Query: 1035 SPVSIRTEKPAKQSASQSNKGGESNASSANVAGQPASSFSETELSEVVDDWEKA 1088
T +P Q E ++SS QP E EVVDDWEK
Sbjct: 1151 ------TLEPIAQI--------EESSSSKTTGKQPVEGSGE----EVVDDWEKV 1186
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Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|B1AY10|NFX1_MOUSE Transcriptional repressor NF-X1 OS=Mus musculus GN=Nfx1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q12986|NFX1_HUMAN Transcriptional repressor NF-X1 OS=Homo sapiens GN=NFX1 PE=1 SV=2 | Back alignment and function description |
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| >sp|A6QLA0|NFX1_BOVIN Transcriptional repressor NF-X1 OS=Bos taurus GN=NFX1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q18034|NFX1_CAEEL Transcriptional repressor NF-X1 homolog OS=Caenorhabditis elegans GN=tag-182 PE=3 SV=1 | Back alignment and function description |
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| >sp|P40798|STC_DROME Protein shuttle craft OS=Drosophila melanogaster GN=stc PE=1 SV=2 | Back alignment and function description |
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| >sp|O74853|FAP1H_SCHPO FKBP12-associated protein 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fap1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q54BK0|NFX1_DICDI Transcriptional repressor NF-X1 homolog OS=Dictyostelium discoideum GN=nfx1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P53971|FAP1_YEAST FKBP12-associated protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAP1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9FFK8|NFXL2_ARATH NF-X1-type zinc finger protein NFXL2 OS=Arabidopsis thaliana GN=NFXL2 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1090 | ||||||
| 359491532 | 1850 | PREDICTED: NF-X1-type zinc finger protei | 0.978 | 0.576 | 0.729 | 0.0 | |
| 224117970 | 1112 | predicted protein [Populus trichocarpa] | 0.992 | 0.973 | 0.734 | 0.0 | |
| 255586406 | 1745 | nuclear transcription factor, X-box bind | 0.883 | 0.551 | 0.769 | 0.0 | |
| 224125942 | 942 | predicted protein [Populus trichocarpa] | 0.857 | 0.992 | 0.783 | 0.0 | |
| 356527906 | 1815 | PREDICTED: NF-X1-type zinc finger protei | 0.905 | 0.543 | 0.740 | 0.0 | |
| 449524334 | 975 | PREDICTED: NF-X1-type zinc finger protei | 0.889 | 0.994 | 0.747 | 0.0 | |
| 449439481 | 975 | PREDICTED: NF-X1-type zinc finger protei | 0.889 | 0.994 | 0.747 | 0.0 | |
| 297849340 | 1134 | NF-X1 type zinc finger family protein [A | 0.924 | 0.888 | 0.690 | 0.0 | |
| 15218447 | 1188 | NF-X1-type zinc finger protein NFXL1 [Ar | 0.927 | 0.851 | 0.677 | 0.0 | |
| 357499171 | 1173 | Transcriptional repressor NF-X1-like pro | 0.933 | 0.867 | 0.674 | 0.0 |
| >gi|359491532|ref|XP_002279249.2| PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1622 bits (4201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 792/1085 (72%), Positives = 892/1085 (82%), Gaps = 18/1085 (1%)
Query: 12 PARSARREWVPRGSPARVVN--PPPQSINPNTMNGVVENSRNMPTPDDNQHSRNIAPRVQ 69
P ++ R+ WVPRGS VN P P S + +NG+ +S P D A R
Sbjct: 16 PNQTGRQAWVPRGSAPHAVNSHPNPSSGFNSNLNGIGGDSNFSSAPPDGPSRGGFASRNY 75
Query: 70 NGQFTNHHRGRARGENQDKKLPKDLD--LPQLLQEIQDKLMKSKVECMICYDMVKRSAPI 127
+ +N R R ++Q+ K PKDL+ LPQL+QEIQ+KLMK VECMICYDMV+RSAPI
Sbjct: 76 AARPSNQRRERV--DDQEVKGPKDLNSNLPQLVQEIQEKLMKGSVECMICYDMVRRSAPI 133
Query: 128 WSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLTSSKEIRYVCFCG 187
WSCSSC+SIFHL+CIKKWARAPTS D S E++QG NWRCPGCQSVQLT+SKEIRYVCFCG
Sbjct: 134 WSCSSCYSIFHLNCIKKWARAPTSTDFSVEKNQGVNWRCPGCQSVQLTASKEIRYVCFCG 193
Query: 188 KRTDPTSDFYLTPHSCGEPCGKPLESKISSAGGSEEDLCPHKCVLQCHPGPCPPCKAFAP 247
KR+DP SD YLTPHSCGEPCGKPL +I +G S ED CPH CVLQCHPGPCPPCKAFAP
Sbjct: 194 KRSDPPSDLYLTPHSCGEPCGKPLNREIIGSGESNEDFCPHVCVLQCHPGPCPPCKAFAP 253
Query: 248 PRLCPCGKKMITTRCFDRKSVLTCGQHCNKHLECWRHKCEKICHVGPCGPCRVLVNASCF 307
PRLCPC KK+ITTRC DRKSVLTCGQ C+K LEC RH+CE++CHVG C PC+VLVNASCF
Sbjct: 254 PRLCPCRKKIITTRCSDRKSVLTCGQRCDKLLECGRHRCERMCHVGACDPCQVLVNASCF 313
Query: 308 CKKKVEVVLCGDMAVKGEVKAEAGVFSCSSTCGKKLSCGHHSCGEICHPGPCGDCELLPS 367
CK VEVVLCG MAVKGE+K+E GVFSC CGKKL CG+H C EICHPGPCGDC L+PS
Sbjct: 314 CKNTVEVVLCGSMAVKGELKSEDGVFSCRWICGKKLFCGNHDCDEICHPGPCGDCNLMPS 373
Query: 368 KIKSCFCGKMSLQEQRKSCLDPIPACSEKCGKPLACGLHYCDELCHAGNCPPCLAAVTQK 427
+I++C+CGK SLQE+R+SCLDPIP C + CGKPL CG+H+C + CHAG+C PCL V QK
Sbjct: 374 RIRTCYCGKTSLQEERRSCLDPIPTCLQICGKPLPCGMHFCKDTCHAGDCAPCLVLVNQK 433
Query: 428 CRCGSTSRNVECYRTTGGENFTCEKACGRKKNCGRHRCSERCCPLSSSNSLLSGDWDPHF 487
CRCGSTSR VECY+TT E FTCEK CGRKKNCGRHRCSERCCPLS+S ++L GDWDPH
Sbjct: 434 CRCGSTSRTVECYKTTAEEKFTCEKPCGRKKNCGRHRCSERCCPLSNSGNVLFGDWDPHL 493
Query: 488 CQMACGKKLRCGQHSCESLCHSGHCPPCLETIFTDLTCACGRTSFPPPLPCGTPPPSCQL 547
C M CGKKLRCGQHSCE+LCHSGHCPPCLETIFTDLTCACGRTS PPLPCGTP PSCQ
Sbjct: 494 CSMTCGKKLRCGQHSCENLCHSGHCPPCLETIFTDLTCACGRTSIAPPLPCGTPTPSCQH 553
Query: 548 PCSVPQPCGHSASHSCHFGDCPPCSVPIAKECIGGHVVLRNVPCGSKDIRCNKLCGKTRQ 607
PCSVPQPCGH +SHSCHFGDCPPCSVPIAKECIGGHVVLRN+PCGS+DIRCNKLCGKTRQ
Sbjct: 554 PCSVPQPCGHLSSHSCHFGDCPPCSVPIAKECIGGHVVLRNIPCGSRDIRCNKLCGKTRQ 613
Query: 608 CGMHACGRTCHPPPCDTACNSEPGSKASCGQVCGAPRRDCRHTCTALCHPSALCPDVRCE 667
CGMHACGRTCHPPPCD++C S G ++SCGQ CGAPRRDCRHTCTA CHPS+ CPD RC
Sbjct: 614 CGMHACGRTCHPPPCDSSCASGSGLRSSCGQTCGAPRRDCRHTCTAPCHPSSPCPDSRCN 673
Query: 668 FPFTITCSCGRITASVPCDAGGSSSGYSSDTVYEASIVQKLPAPLQPVESTGKKIPLGQR 727
FP TITCSCGRI+A+VPCDAGGSS G++ DTV EASI+QKLP PLQPVE+ G+KIPLGQR
Sbjct: 674 FPVTITCSCGRISATVPCDAGGSSVGFNGDTVSEASIIQKLPVPLQPVEANGRKIPLGQR 733
Query: 728 KLMCDDECAKLERKRVLADAFEITTPNLDALHFGE-SAVTELLADLYRRDPKWVLSVEER 786
KL CDDECAK ERKRVLADAF+IT PNLDALHFGE S V+ELLADL+RRDPKWVLSVEER
Sbjct: 734 KLACDDECAKQERKRVLADAFDITPPNLDALHFGETSVVSELLADLFRRDPKWVLSVEER 793
Query: 787 CKFLVLGKNRGSTNALKVHVFCPMLKDKRDAVRLIAERWKLAVNPAGWEPKRFIVVHVTP 846
CKFLVLGK RG+T++L+VHVFCPMLK+KRDAVRLIAERWKL+VN AGWEPKRFIVVHVTP
Sbjct: 794 CKFLVLGKTRGTTSSLRVHVFCPMLKEKRDAVRLIAERWKLSVNSAGWEPKRFIVVHVTP 853
Query: 847 KSKPPPRVIGVKGATTVNAPHAPVFDPLVDMDPRLVVSFLDLPRESDISALVLRFGGECE 906
KSK P RV+G KG+T +N + PVFDPLVDMDPRLVVS LDLPR++DISALVLRFGGECE
Sbjct: 854 KSKAPARVLGAKGSTPLNVLNPPVFDPLVDMDPRLVVSLLDLPRDADISALVLRFGGECE 913
Query: 907 LVWLNDKNALAVFSDPARAATATRRLDHGSVYYGAVVV-QNVGAPST---ANAWGGPGTV 962
LVWLNDKNALAVFSDPARAATA RRLDHGSVY+GAVV+ QN AP ANAWGG
Sbjct: 914 LVWLNDKNALAVFSDPARAATAMRRLDHGSVYHGAVVIPQNGIAPVASQGANAWGGS--- 970
Query: 963 KEVGAALSSQRGNPWKKAVVQEMAWREDSWGEEESSAGSGDVQASAWKNKEAPIVASINR 1022
++ + N WKKAVVQE W E SWG E+ SAGS D+QAS WK KE+PIVAS+NR
Sbjct: 971 ---AGGMAKEGRNQWKKAVVQESGWSESSWGGEDWSAGSVDLQASVWKGKESPIVASVNR 1027
Query: 1023 WSVLDSETSSYSSPVSIRTEKPAKQSASQSNKGGESNASSANVAGQPASSFSETELSEVV 1082
W+VL+ E S SS S++TE K+ +QS G E ++S +N A + SE + SEVV
Sbjct: 1028 WNVLEPELVSSSSTSSVKTEDSGKRVGNQSVPGLEPSSSHSNSAETEGDT-SEADASEVV 1086
Query: 1083 DDWEK 1087
DDWEK
Sbjct: 1087 DDWEK 1091
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117970|ref|XP_002317701.1| predicted protein [Populus trichocarpa] gi|222858374|gb|EEE95921.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255586406|ref|XP_002533849.1| nuclear transcription factor, X-box binding, putative [Ricinus communis] gi|223526207|gb|EEF28532.1| nuclear transcription factor, X-box binding, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224125942|ref|XP_002329755.1| predicted protein [Populus trichocarpa] gi|222870663|gb|EEF07794.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356527906|ref|XP_003532547.1| PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449524334|ref|XP_004169178.1| PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449439481|ref|XP_004137514.1| PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297849340|ref|XP_002892551.1| NF-X1 type zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297338393|gb|EFH68810.1| NF-X1 type zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|15218447|ref|NP_172488.1| NF-X1-type zinc finger protein NFXL1 [Arabidopsis thaliana] gi|75337836|sp|Q9SY59.1|NFXL1_ARATH RecName: Full=NF-X1-type zinc finger protein NFXL1; Short=AtNFXL1 gi|4914319|gb|AAD32867.1|AC005489_5 F14N23.5 [Arabidopsis thaliana] gi|332190428|gb|AEE28549.1| NF-X1-type zinc finger protein NFXL1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|357499171|ref|XP_003619874.1| Transcriptional repressor NF-X1-like protein [Medicago truncatula] gi|355494889|gb|AES76092.1| Transcriptional repressor NF-X1-like protein [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1090 | ||||||
| TAIR|locus:2012753 | 1188 | NFXL1 "NF-X-like 1" [Arabidops | 0.955 | 0.876 | 0.642 | 0.0 | |
| UNIPROTKB|E2RI36 | 1121 | NFX1 "Uncharacterized protein" | 0.750 | 0.729 | 0.351 | 5.5e-148 | |
| UNIPROTKB|Q12986 | 1120 | NFX1 "Transcriptional represso | 0.620 | 0.603 | 0.369 | 5.3e-132 | |
| MGI|MGI:1921414 | 1114 | Nfx1 "nuclear transcription fa | 0.611 | 0.598 | 0.376 | 3.1e-131 | |
| UNIPROTKB|D4AE50 | 1114 | Nfx1 "Protein Nfx1" [Rattus no | 0.611 | 0.598 | 0.371 | 6.4e-131 | |
| UNIPROTKB|F1NDU8 | 1126 | NFX1 "Uncharacterized protein" | 0.637 | 0.617 | 0.363 | 8.1e-131 | |
| UNIPROTKB|A6QLA0 | 1116 | NFX1 "Transcriptional represso | 0.621 | 0.606 | 0.361 | 1.2e-127 | |
| DICTYBASE|DDB_G0293590 | 1506 | DDB_G0293590 "NF-X1-type zinc | 0.408 | 0.295 | 0.376 | 1.7e-124 | |
| FB|FBgn0001978 | 1106 | stc "shuttle craft" [Drosophil | 0.583 | 0.575 | 0.338 | 8e-110 | |
| WB|WBGene00007048 | 1119 | nfx-1 [Caenorhabditis elegans | 0.566 | 0.551 | 0.348 | 3.5e-107 |
| TAIR|locus:2012753 NFXL1 "NF-X-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3779 (1335.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 708/1102 (64%), Positives = 809/1102 (73%)
Query: 3 SDRRDGTRNPARSARREWVPRGSPARVVN--PPPQSINPNTMNGVVENSRNMPTPDDNQH 60
SD G P R RR P R N PPP PN N+ + PD+ Q
Sbjct: 128 SDN-SGPPQPYRH-RRNNAPENQHQRSDNIGPPP----PNRQR---RNNASGTLPDNRQR 178
Query: 61 SRNIAPRVQNGQFTNHHRGRARGENXXXXXXXXXXXXXXXXEIQDKLMKSKVECMICYDM 120
+A R + N + A+ EN E+Q+KL+KS +ECMICYD
Sbjct: 179 ---VASRTRP---VNQGKRVAKEENVVLTDPNLPQLVQ---ELQEKLVKSSIECMICYDK 229
Query: 121 VKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLTSSKEI 180
V RSA IWSCSSC+SIFH++CIK+WARAPTS DL AE++QG NWRCPGCQSVQLTSSKEI
Sbjct: 230 VGRSANIWSCSSCYSIFHINCIKRWARAPTSVDLLAEKNQGDNWRCPGCQSVQLTSSKEI 289
Query: 181 RYVCFCGKRTDPTSDFYLTPHSCGEPCGKPLESKISSAGGSEEDLCPHKCVLQCHPGPCP 240
Y CFCGKR DP SD YLTPHSCGEPCGKPLE + + A +EEDLCPH CVLQCHPGPCP
Sbjct: 290 SYRCFCGKRRDPPSDPYLTPHSCGEPCGKPLEKEFAPAETTEEDLCPHVCVLQCHPGPCP 349
Query: 241 PCKAFAPPRLCPCGKKMITTRCFDRKSVLTCGQHCNKHLECWRHKCEKICHVGPCGPCRV 300
PCKAFAPPR CPCGKKM+TTRC +R+S L CGQ C+K L C RH+CE+ CHVGPC PC+V
Sbjct: 350 PCKAFAPPRSCPCGKKMVTTRCSERRSDLVCGQRCDKLLSCGRHQCERTCHVGPCDPCQV 409
Query: 301 LVNASCFCKKKVEVVLCGDMAVKGEVKAEAGVFSCSSTCGKKLSCGHHSCGEICHPGPCG 360
LVNA+CFCKKKVE V+CGDM VKGE+KAE GV+SCS CGK L CG+H C E+CHPGPCG
Sbjct: 410 LVNATCFCKKKVETVICGDMNVKGELKAEDGVYSCSFNCGKPLGCGNHFCSEVCHPGPCG 469
Query: 361 DCELLPSKIKSCFCGKMSLQEQ-RKSCLDPIPACSEKCGKPLACGLHYCDELCHAGNCPP 419
DC+LLPS++K+C+CG L+EQ R+SCLDPIP+CS C K L C LH C+E+CHAG+CPP
Sbjct: 470 DCDLLPSRVKTCYCGNTRLEEQIRQSCLDPIPSCSNVCRKLLPCRLHTCNEMCHAGDCPP 529
Query: 420 CLAAVTQKCRCGSTSRNVECYRTTGGE--NFTCEKACGRKKNCGRHRCSERCCPXXXXXX 477
CL V QKCRCGSTSR VECY TT E F C K CGRKKNCGRHRCSERCCP
Sbjct: 530 CLVQVNQKCRCGSTSRAVECYITTSSEAEKFVCAKPCGRKKNCGRHRCSERCCPLLNGKK 589
Query: 478 XX-XGDWDPHFCQMACGKKLRCGQHSCESLCHSGHCPPCLETIFTDLTCACGRTSFXXXX 536
GDWDPH CQ+ C KKLRCGQHSCESLCHSGHCPPCLE IFTDLTCACGRTS
Sbjct: 590 NDLSGDWDPHVCQIPCQKKLRCGQHSCESLCHSGHCPPCLEMIFTDLTCACGRTSIPPPL 649
Query: 537 XXXXXXXSCQLPCSVPQPCGHSASHSCHFGDCPPCSVPIAKECIGGHVVLRNVPCGSKDI 596
SCQLPC +PQPCGHS +H CHFGDCPPCS P+ K+C+GGHVVLRN+PCG KDI
Sbjct: 650 SCGTPVPSCQLPCPIPQPCGHSDTHGCHFGDCPPCSTPVEKKCVGGHVVLRNIPCGLKDI 709
Query: 597 RCNKLCGKTRQCGMHACGRTCHPPPCDTACNSEPGSKASCGQVCGAPRRDCRHTCTALCH 656
RC K+CGKTR+CGMHAC RTCHP PCD+ SE G + +C Q CGAPR DCRHTC ALCH
Sbjct: 710 RCTKICGKTRRCGMHACARTCHPEPCDSFNESEAGMRVTCRQKCGAPRTDCRHTCAALCH 769
Query: 657 PSALCPDVRCEFPFTITCSCGRITASVPCDAXXXXXXXXXD--TVY-EASIVQKLPAPLQ 713
PSA CPD+RCEF TITCSCGRITA+VPCDA Y EAS++QKLPAPLQ
Sbjct: 770 PSAPCPDLRCEFSVTITCSCGRITATVPCDAGGRSANGSNVYCAAYDEASVLQKLPAPLQ 829
Query: 714 PVESTGKKIPLGQRKLMCDDECAKLERKRVLADAFEITTPNLDALHFGE-SAVTELLADL 772
PVES+G +IPLGQRKL CDDECAKLERKRVL DAF+IT PNL+ALHF E SA+TE+++DL
Sbjct: 830 PVESSGNRIPLGQRKLSCDDECAKLERKRVLQDAFDITPPNLEALHFSENSAMTEIISDL 889
Query: 773 YRRDPKWVLSVEERCKFLVLGKNRGSTNALKVHVFCPMLKDKRDAVRLIAERWKLAVNPA 832
YRRDPKWVL+VEERCKFLVLGK RGST+ALKVH+FCPM KDKRD VRLIAERWKL V+ A
Sbjct: 890 YRRDPKWVLAVEERCKFLVLGKARGSTSALKVHIFCPMQKDKRDTVRLIAERWKLGVSNA 949
Query: 833 GWEPKRFIVVHVTPKSKPPPRVIGVKG-ATTVNAPHAPVFDPLVDMDPRLVVSFLDLPRE 891
GWEPKRF VVHVT KSKPP R+IG +G A ++ PH P +D LVDMDP LVVSFLDLPRE
Sbjct: 950 GWEPKRFTVVHVTAKSKPPTRIIGARGGAISIGGPHPPFYDSLVDMDPGLVVSFLDLPRE 1009
Query: 892 SDISALVLRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVYYGAVVVQNVG-AP 950
++ISALVLRFGGECELVWLNDKNALAVF D ARAATA RRL+HGSVY+GAVVVQ+ G +P
Sbjct: 1010 ANISALVLRFGGECELVWLNDKNALAVFHDHARAATAMRRLEHGSVYHGAVVVQSGGQSP 1069
Query: 951 STANAWGG-PGTVKEVGAALSSQRGNPWKKAVVQEMAWREDSWXXXXX--XXXXXDVQAS 1007
S N WG PG+ +A +GNPW++AV+QE +DSW D QAS
Sbjct: 1070 SLNNVWGKLPGS-----SAWDVDKGNPWRRAVIQES---DDSWGAEDSPIGGSSTDAQAS 1121
Query: 1008 AWKNKEA--PIVASINRWSVLDSETSSYSSPVSIRTEKPAKQSASQSNKGGESNASSANV 1065
A ++ ++ PIV S+NRWSVL+ + +S S T +P Q E ++SS
Sbjct: 1122 ALRSAKSNSPIVTSVNRWSVLEPKKASTS------TLEPIAQI--------EESSSSKTT 1167
Query: 1066 AGQPASSFSETELSEVVDDWEK 1087
QP E EVVDDWEK
Sbjct: 1168 GKQPVEGSGE----EVVDDWEK 1185
|
|
| UNIPROTKB|E2RI36 NFX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q12986 NFX1 "Transcriptional repressor NF-X1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1921414 Nfx1 "nuclear transcription factor, X-box binding 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|D4AE50 Nfx1 "Protein Nfx1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NDU8 NFX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A6QLA0 NFX1 "Transcriptional repressor NF-X1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0293590 DDB_G0293590 "NF-X1-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0001978 stc "shuttle craft" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00007048 nfx-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SY59 | NFXL1_ARATH | 6, ., 3, ., 2, ., - | 0.6778 | 0.9275 | 0.8510 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1090 | |||
| cd06008 | 49 | cd06008, NF-X1-zinc-finger, Presumably a zinc bind | 4e-13 | |
| cd06008 | 49 | cd06008, NF-X1-zinc-finger, Presumably a zinc bind | 4e-10 | |
| cd06008 | 49 | cd06008, NF-X1-zinc-finger, Presumably a zinc bind | 1e-09 | |
| cd06008 | 49 | cd06008, NF-X1-zinc-finger, Presumably a zinc bind | 2e-09 | |
| COG5219 | 1525 | COG5219, COG5219, Uncharacterized conserved protei | 9e-07 | |
| cd02643 | 74 | cd02643, R3H_NF-X1, R3H domain of the X1 box bindi | 3e-06 | |
| cd06008 | 49 | cd06008, NF-X1-zinc-finger, Presumably a zinc bind | 8e-06 | |
| cd06008 | 49 | cd06008, NF-X1-zinc-finger, Presumably a zinc bind | 1e-05 | |
| cd06008 | 49 | cd06008, NF-X1-zinc-finger, Presumably a zinc bind | 6e-04 | |
| cd06008 | 49 | cd06008, NF-X1-zinc-finger, Presumably a zinc bind | 0.002 | |
| cd06008 | 49 | cd06008, NF-X1-zinc-finger, Presumably a zinc bind | 0.002 |
| >gnl|CDD|100116 cd06008, NF-X1-zinc-finger, Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1 | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-13
Identities = 28/49 (57%), Positives = 33/49 (67%)
Query: 393 CSEKCGKPLACGLHYCDELCHAGNCPPCLAAVTQKCRCGSTSRNVECYR 441
C E CGKPL CG H C++LCH G CPPC V +KCRCG T++ V C
Sbjct: 1 CGEVCGKPLPCGNHKCEQLCHEGPCPPCPETVKKKCRCGKTTKEVPCGE 49
|
The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Length = 49 |
| >gnl|CDD|100116 cd06008, NF-X1-zinc-finger, Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1 | Back alignment and domain information |
|---|
| >gnl|CDD|100116 cd06008, NF-X1-zinc-finger, Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1 | Back alignment and domain information |
|---|
| >gnl|CDD|100116 cd06008, NF-X1-zinc-finger, Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1 | Back alignment and domain information |
|---|
| >gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|100072 cd02643, R3H_NF-X1, R3H domain of the X1 box binding protein (NF-X1) and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|100116 cd06008, NF-X1-zinc-finger, Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1 | Back alignment and domain information |
|---|
| >gnl|CDD|100116 cd06008, NF-X1-zinc-finger, Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1 | Back alignment and domain information |
|---|
| >gnl|CDD|100116 cd06008, NF-X1-zinc-finger, Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1 | Back alignment and domain information |
|---|
| >gnl|CDD|100116 cd06008, NF-X1-zinc-finger, Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1 | Back alignment and domain information |
|---|
| >gnl|CDD|100116 cd06008, NF-X1-zinc-finger, Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1090 | |||
| KOG1952 | 950 | consensus Transcription factor NF-X1, contains NFX | 100.0 | |
| KOG1952 | 950 | consensus Transcription factor NF-X1, contains NFX | 100.0 | |
| cd02643 | 74 | R3H_NF-X1 R3H domain of the X1 box binding protein | 99.76 | |
| cd06006 | 59 | R3H_unknown_2 R3H domain of a group of fungal prot | 99.7 | |
| cd02642 | 63 | R3H_encore_like R3H domain of encore-like and DIP1 | 99.38 | |
| cd02646 | 58 | R3H_G-patch R3H domain of a group of fungal and pl | 99.33 | |
| smart00393 | 79 | R3H Putative single-stranded nucleic acids-binding | 99.25 | |
| cd02636 | 61 | R3H_sperm-antigen R3H domain of a group of metazoa | 99.25 | |
| PF01424 | 63 | R3H: R3H domain; InterPro: IPR001374 The R3H motif | 99.24 | |
| cd02641 | 60 | R3H_Smubp-2_like R3H domain of Smubp-2_like protei | 99.22 | |
| cd06008 | 49 | NF-X1-zinc-finger Presumably a zinc binding domain | 99.18 | |
| cd02644 | 67 | R3H_jag R3H domain found in proteins homologous to | 99.17 | |
| cd06008 | 49 | NF-X1-zinc-finger Presumably a zinc binding domain | 99.08 | |
| cd02325 | 59 | R3H R3H domain. The name of the R3H domain comes f | 99.07 | |
| cd02640 | 60 | R3H_NRF R3H domain of the NF-kappaB-repression fac | 98.96 | |
| cd06007 | 59 | R3H_DEXH_helicase R3H domain of a group of protein | 98.93 | |
| cd02638 | 62 | R3H_unknown_1 R3H domain of a group of eukaryotic | 98.88 | |
| COG1847 | 208 | Jag Predicted RNA-binding protein [General functio | 98.73 | |
| cd02645 | 60 | R3H_AAA R3H domain of a group of proteins with unk | 98.57 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 97.75 | |
| PF01422 | 20 | zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000 | 97.69 | |
| PF01422 | 20 | zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000 | 97.66 | |
| smart00438 | 26 | ZnF_NFX Repressor of transcription. | 97.04 | |
| cd02639 | 60 | R3H_RRM R3H domain of mainly fungal proteins which | 96.89 | |
| smart00438 | 26 | ZnF_NFX Repressor of transcription. | 96.74 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 96.27 | |
| PF10309 | 62 | DUF2414: Protein of unknown function (DUF2414); In | 95.9 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 95.19 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 95.18 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 95.15 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 94.41 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 94.27 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 94.12 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 93.86 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 93.64 | |
| COG5219 | 1525 | Uncharacterized conserved protein, contains RING Z | 93.06 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 92.8 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 87.56 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 87.22 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 84.81 | |
| KOG4483 | 528 | consensus Uncharacterized conserved protein [Funct | 84.74 | |
| PF05883 | 134 | Baculo_RING: Baculovirus U-box/Ring-like domain; I | 84.59 |
| >KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-164 Score=1433.33 Aligned_cols=734 Identities=46% Similarity=0.980 Sum_probs=667.4
Q ss_pred ccCCCccccCCCCCChhHHHHHHHHHhccCcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccC
Q 001378 81 ARGENQDKKLPKDLDLPQLLQEIQDKLMKSKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQ 160 (1090)
Q Consensus 81 ~~~~~~~~~~~~d~~~~~l~~~l~e~l~~~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~ 160 (1090)
+..++++.-.+.|++..++++.|+++|.++.|||||||+.|+++++||||.+||+||||+||++||++. +++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~-------ek~~ 233 (950)
T KOG1952|consen 161 RTPESYEPQNESLDNDLTLTQSLIEQLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSS-------EKTG 233 (950)
T ss_pred cchhhhcccccCccchHHHHHHHHHHHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHh-------hhcc
Confidence 333444443566777999999999999999999999999999999999999999999999999999982 3345
Q ss_pred CCCCCCCCCCccccCCCCCceeeeecCCccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCccccccccCCCCC
Q 001378 161 GFNWRCPGCQSVQLTSSKEIRYVCFCGKRTDPTSDFYLTPHSCGEPCGKPLESKISSAGGSEEDLCPHKCVLQCHPGPCP 240 (1090)
Q Consensus 161 ~~~WrCP~C~~~~~~~~~p~~y~CfCGK~~~p~~~~~~~phSCg~~C~k~l~~~~~~~~~~~~~~C~H~C~l~CHpGpCP 240 (1090)
+..||||+||+++... |..|+|||||+.||+++++++||||||+|+|++. ..|+|+|.|+|||||||
T Consensus 234 ~~~WrCP~Cqsv~~~~--~~~y~C~CGk~~nP~~~~~~~PHSCGE~C~k~~~-----------~~C~H~C~llCHPGPCp 300 (950)
T KOG1952|consen 234 QDGWRCPACQSVSKTV--PKTYLCFCGKVKNPEFSRNELPHSCGEVCGKPRP-----------GGCPHPCTLLCHPGPCP 300 (950)
T ss_pred CccccCCcccchhccC--CcccceecCcccCCCCCCCCCCccccccccCCCC-----------CCCCCcccccccCCCCC
Confidence 6799999999999875 4599999999999999999999999999999876 35999999999999999
Q ss_pred CCcccCCCcccCCCCccceeccCCCCCcccccccccccccCCCcccccccccCCCccCccceeEEEecCCeeeEEecccc
Q 001378 241 PCKAFAPPRLCPCGKKMITTRCFDRKSVLTCGQHCNKHLECWRHKCEKICHVGPCGPCRVLVNASCFCKKKVEVVLCGDM 320 (1090)
Q Consensus 241 pC~~~~~~~~C~CGk~~~~~rC~~~~~~~sC~~~C~K~L~CG~H~C~~~CH~G~C~~C~~~v~~~C~CGk~~~~v~C~~~ 320 (1090)
||.+|+ .++|+||++..+++|+.....+-|+++|+|+|+||+|+|+++||+|+|++|.+++.++||||+..+++.|+..
T Consensus 301 pC~~~v-~~~C~CGk~s~~vrC~~~~~~~~C~~vC~k~L~Cg~H~Ck~~CH~G~C~~C~e~~v~~C~Cgk~~k~v~C~~~ 379 (950)
T KOG1952|consen 301 PCPAFV-TKSCHCGKTSKTVRCGQIQSAVCCGNVCDKLLSCGQHRCKEICHSGECGPCQEQLVQKCYCGKTKKEVPCNRV 379 (950)
T ss_pred chhhhh-hhcccCCCeeeeEEeccccchhhhcccCCCccccccchhhhhcCCCCCCcChhhheeeeccCCcccceecccc
Confidence 999998 6999999999999999976668899999999999999999999999999999999999999999999999886
Q ss_pred cccCcccccccccccccccccccCCCCCeecCcccCCCCCCCCCCCCCceeccCCCcccc---cccccccCCcccccccc
Q 001378 321 AVKGEVKAEAGVFSCSSTCGKKLSCGHHSCGEICHPGPCGDCELLPSKIKSCFCGKMSLQ---EQRKSCLDPIPACSEKC 397 (1090)
Q Consensus 321 ~~~~~~~~~~~~~sC~~~C~k~L~CG~H~C~~~CH~g~C~~C~~~p~~v~tCpCGkt~l~---~~R~~C~dpip~C~~~C 397 (1090)
.. +.|.|+|+|...|+++|.||+|.|.+.||+++|++|++.++.+++||||++.|+ ..|++|.|+||+|+.+|
T Consensus 380 ~~----~~~~g~ysC~~~C~~~~~Cg~H~c~~~Ch~~~c~~c~~~~~~~~~CpCGr~~l~lg~~~rksC~DpiPtC~~vC 455 (950)
T KOG1952|consen 380 RG----KEWFGVYSCDDTCGKMLSCGKHKCSEVCHAGPCGQCPRLPQRVRTCPCGRTPLELGRRQRKSCDDPVPTCGSVC 455 (950)
T ss_pred cc----cccceeEecccccccccccccchhcccccCCccccCccchhhceecCCCCcccccccccccccCCcCCcccccc
Confidence 42 468899999999999999999999999999999999999999999999999953 35899999999999999
Q ss_pred ccccCCCCccCCCCccCCCccccccceeeEecCCCeeeeecCccCCCCccccccccccccccCCCcccCCCccCCCCCCC
Q 001378 398 GKPLACGLHYCDELCHAGNCPPCLAAVTQKCRCGSTSRNVECYRTTGGENFTCEKACGRKKNCGRHRCSERCCPLSSSNS 477 (1090)
Q Consensus 398 ~K~L~CG~H~C~~~CH~G~C~pC~~~v~~~C~CG~t~~~v~C~~~~~~~~~~C~~~C~k~l~CGrH~C~~~CCp~~~~~~ 477 (1090)
+|+|.||.|+|..+||.|+|+||.+.+.++||||.++++|+|.+..+...|.|.+.|+++++||+|+|+++||..
T Consensus 456 ~K~L~Cg~H~C~~~CH~g~C~pC~~~~~v~CRCg~~~~~i~C~~~~~~~~~~C~k~C~~k~sCgrHkC~~~CC~~----- 530 (950)
T KOG1952|consen 456 GKPLPCGIHTCGEKCHEGACPPCSVNVSVKCRCGFSTKQIPCDQLSEDARFMCDKRCTKKRSCGRHKCNERCCSD----- 530 (950)
T ss_pred cCccccccccCCCeeecCCCCCcccccceeeecccccceeecccccccccchhhhhccccccccccccchhhcCC-----
Confidence 999999999999999999999999999999999999999999998778899999999999999999999999975
Q ss_pred CCCCCCCCcccccccccccCCCCccccCcccCCCCCCCccccccceecCCCCcccCCCCCCCCCCCCccCCCCCCCCCCC
Q 001378 478 LLSGDWDPHFCQMACGKKLRCGQHSCESLCHSGHCPPCLETIFTDLTCACGRTSFPPPLPCGTPPPSCQLPCSVPQPCGH 557 (1090)
Q Consensus 478 ~~~~~~~~~~C~~~Cgk~L~CG~H~C~~~CH~G~C~pC~e~~~~~l~C~CG~t~i~ppvpCgt~~p~C~~~C~r~l~CGH 557 (1090)
.+|+|.++|+|+|+||+|.|+.+||.|.||||+|++|++|+|+||+|+|+|||+|||++|.|..||.++.+|||
T Consensus 531 ------~eH~C~~pCnkkLsCG~H~Ce~~CH~G~CPpCleasf~el~C~CG~tvi~pPv~CGt~~P~C~~pC~~~~~C~H 604 (950)
T KOG1952|consen 531 ------REHICPLPCNKKLSCGIHKCEEPCHRGNCPPCLEASFDELTCHCGATVIYPPVPCGTRLPECSQPCSRPHSCDH 604 (950)
T ss_pred ------CcccccccccccccccchhhhcccCCCCCCchhhhccccccccCCCeeecCCccCCCCCCCCCCCCCCCccCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC-CCCCCCccceEEecccceeecccCcCCCCccchhccCcccCCCCCCCCCCCCCCCCCCCCCCCCCccCcc
Q 001378 558 SASHSCHFG-DCPPCSVPIAKECIGGHVVLRNVPCGSKDIRCNKLCGKTRQCGMHACGRTCHPPPCDTACNSEPGSKASC 636 (1090)
Q Consensus 558 ~c~~~CH~g-~CPPC~~~v~~~C~cG~~~~~~vpC~~~~~~C~~~C~k~l~CG~H~C~~~Ch~~pC~~~~~~~~~~~~~C 636 (1090)
+..|.||++ +||||+++|++.|.|||.++.||||++.+++|+.+||++|+||.|.|+++||.++|. ....|
T Consensus 605 ~~~H~CH~~~~CPPCt~~v~K~C~ggh~~~~nipC~~~dvsCg~~CgkpL~Cg~H~Cqr~CH~~~c~--------~~e~C 676 (950)
T KOG1952|consen 605 PVYHNCHSEEKCPPCTELVEKPCVGGHEVRENIPCHLTDVSCGLLCGKPLPCGMHKCQRTCHPGECC--------VGEKC 676 (950)
T ss_pred CCCcCCCCCCCCCCCCcceeecccCCceehhcCCccCcccccccccCCccccccceeccccCCCccc--------ccChh
Confidence 999999998 799999999999999999999999999999999999999999999999999999886 24789
Q ss_pred cccccCCCCCCCCCcccCccCCCCCCCCCCcccEeeeccCCCccccccCCCCCCCCCCC-CchhhhhhhhccCCCCCCcc
Q 001378 637 GQVCGAPRRDCRHTCTALCHPSALCPDVRCEFPFTITCSCGRITASVPCDAGGSSSGYS-SDTVYEASIVQKLPAPLQPV 715 (1090)
Q Consensus 637 ~q~C~k~l~~C~H~C~~~CH~g~~CP~~~C~~~v~i~C~Cgr~~~~~~C~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~ 715 (1090)
.|.|+++|+.|+|+|+++||++.+||++||+++|+|+|+|||+++.|+|++...+.... +..-.+.+..+...-.++..
T Consensus 677 kq~C~k~R~~C~H~C~~pCH~~~pCp~~pCka~V~isCeCGrikk~v~C~~~~~~~~~~~~~~c~~~c~~~~~~~~~~e~ 756 (950)
T KOG1952|consen 677 KQKCGKPRPDCGHPCAAPCHPSSPCPPTPCKALVEISCECGRIKKMVTCDEASDSTDQRIAAICMESCEADMRLKGLKEA 756 (950)
T ss_pred hcccCCCCCCCCCCCCcCCCCCCCCCCccccceeEEEEecCccccceecccccCCcchHHHHHhhhhhhhhcccccccch
Confidence 99999999999999999999999999999999999999999999999999987532111 11122233333333445555
Q ss_pred cccCCcccCCCccCCchHHHHHHHHHHHHHhhhCCCCCCccccCcCCcc-hhHHHHHHHHhChhHHHHHHHHHHHHHhcc
Q 001378 716 ESTGKKIPLGQRKLMCDDECAKLERKRVLADAFEITTPNLDALHFGESA-VTELLADLYRRDPKWVLSVEERCKFLVLGK 794 (1090)
Q Consensus 716 ~~~~~~~~~~~~~l~CddeC~k~~R~~~LA~Al~I~~p~~~~~~f~e~~-yse~Ll~~~~~~~~~~~~vE~~L~~fv~~~ 794 (1090)
........+++..|.||+||.+++|++.||+||.|+........+..++ |+++|.+++++++.|++.+|+++.+|+...
T Consensus 757 ~~~~t~~~~~~~~l~c~~ec~~ler~~~~aea~~i~~~~~~~~~~~~~~~~~e~~~e~~r~~~~f~~sv~~e~~~lv~~~ 836 (950)
T KOG1952|consen 757 SNILTKKELHQVKLECDDECSFLERKRRLAEAFSISEDSDEVNKRSSLSKFSESLKEDARKDLKFVKSVEKELEFLVELV 836 (950)
T ss_pred hcccccchhhhhhhhHHHHHHHHHhhhHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHhchhhhccchhhhHHHHHHH
Confidence 5566677888999999999999999999999999997654444444444 999999999999999999999999999887
Q ss_pred ccCCccccceEecCCCChhhHHHHHHHHHHcCCceeecCCCCCceEEEEeCCC-CCCCccccccc
Q 001378 795 NRGSTNALKVHVFCPMLKDKRDAVRLIAERWKLAVNPAGWEPKRFIVVHVTPK-SKPPPRVIGVK 858 (1090)
Q Consensus 795 ~~~~~~~~k~~~f~PM~~~kR~fIHeLAe~ygL~S~S~d~EP~R~VvV~kt~~-Sk~P~~lLs~~ 858 (1090)
..+....+++++|+||+.++|++||+||+.|+|.+.|+|.||+|+||+.+..+ +..|..+++..
T Consensus 837 ~~~~~~~~k~~~~p~ms~~~rr~vh~~~e~~~l~~~sa~~~pkr~~v~t~ir~~s~~~~~~~~~~ 901 (950)
T KOG1952|consen 837 KRGKNYSKKSHSFPPMSRDKRRLVHELAEVFGLESVSADSEPKRNVVVTAIRGKSVFPATTITGV 901 (950)
T ss_pred hhcccccccccccCchhHHHHHHHHhhhhccCCcccccCCCcccceeeEeecccccCchhhHHHH
Confidence 76666578999999999999999999999999999999999999999999755 56777776654
|
|
| >KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription] | Back alignment and domain information |
|---|
| >cd02643 R3H_NF-X1 R3H domain of the X1 box binding protein (NF-X1) and related proteins | Back alignment and domain information |
|---|
| >cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function | Back alignment and domain information |
|---|
| >cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins | Back alignment and domain information |
|---|
| >cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain | Back alignment and domain information |
|---|
| >smart00393 R3H Putative single-stranded nucleic acids-binding domain | Back alignment and domain information |
|---|
| >cd02636 R3H_sperm-antigen R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7 | Back alignment and domain information |
|---|
| >PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids | Back alignment and domain information |
|---|
| >cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins | Back alignment and domain information |
|---|
| >cd06008 NF-X1-zinc-finger Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1 | Back alignment and domain information |
|---|
| >cd02644 R3H_jag R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ | Back alignment and domain information |
|---|
| >cd06008 NF-X1-zinc-finger Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1 | Back alignment and domain information |
|---|
| >cd02325 R3H R3H domain | Back alignment and domain information |
|---|
| >cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF) | Back alignment and domain information |
|---|
| >cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases | Back alignment and domain information |
|---|
| >cd02638 R3H_unknown_1 R3H domain of a group of eukaryotic proteins with unknown function | Back alignment and domain information |
|---|
| >COG1847 Jag Predicted RNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd02645 R3H_AAA R3H domain of a group of proteins with unknown function, who also contain a AAA-ATPase (AAA) domain | Back alignment and domain information |
|---|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
| >PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00438 ZnF_NFX Repressor of transcription | Back alignment and domain information |
|---|
| >cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain | Back alignment and domain information |
|---|
| >smart00438 ZnF_NFX Repressor of transcription | Back alignment and domain information |
|---|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
| >PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
| >COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4483 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 3e-07
Identities = 51/334 (15%), Positives = 93/334 (27%), Gaps = 117/334 (35%)
Query: 608 CGMHACGRTCHPPPCDTACNSEPGSKASCGQVCGAPRRDCRHTCTALCHPSALCPDVRCE 667
G+ G+T A VC V+C+
Sbjct: 156 DGVLGSGKTW------VA-----------LDVC----LS---------------YKVQCK 179
Query: 668 FPFTIT-CSCGRITASVPCDAGGSSSGYSSDTVYEASIVQKLPAPLQPVESTGKKIPLGQ 726
F I + C+ S +TV E ++QKL + P ++
Sbjct: 180 MDFKIFWLNLKN------CN--------SPETVLE--MLQKLLYQIDPNWTSRSDHSSNI 223
Query: 727 RKLMCDDECAKLERKRVLADAFEITTPNLDALHFGESAVTEL-LADLYRRDPKWVLSVEE 785
+ L + E +R+L P + L L L ++ + K +
Sbjct: 224 K-LRIHS--IQAELRRLLKSK-----PYENCL---------LVLLNVQ--NAKAWNAFNL 264
Query: 786 RCKFLVLGKNRGSTNALKVHVFCPMLKDKRDAVRLIAERWKLAVNPAGWEPKRFI--VVH 843
CK L+ + + T+ L + L L P E K + +
Sbjct: 265 SCKILLTTRFKQVTDFLSA--------ATTTHISLDHHSMTL--TPD--EVKSLLLKYLD 312
Query: 844 VTPKSKPP------PRVIGVKGATTVNAPHAPVFDPLVDMDP--RLVVSFLD-------- 887
P+ P PR + + + + V+ D ++ S L+
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 888 --------LPRESDISALVLRFGGECELVWLNDK 913
P + I ++L L+W +
Sbjct: 373 KMFDRLSVFPPSAHIPTILL------SLIWFDVI 400
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381 | Back alignment and structure |
|---|
| >3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Length = 913 | Back alignment and structure |
|---|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1090 | |||
| 1whr_A | 124 | Hypothetical KIAA1002 protein; R3H domain, structu | 99.29 | |
| 2cpm_A | 94 | Sperm-associated antigen 7; R3H domain, structural | 99.27 | |
| 3gku_A | 225 | Probable RNA-binding protein; APC21302, clostridiu | 98.69 | |
| 1msz_A | 86 | DNA-binding protein smubp-2; R3H fold; NMR {Homo s | 98.48 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 97.61 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 97.36 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 97.24 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 97.2 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 97.07 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 97.04 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 97.01 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 96.95 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 96.84 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 96.83 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 96.8 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 96.58 | |
| 2pt7_G | 152 | HP1451, hypothetical protein; ATPase, protein-prot | 96.53 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 96.36 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 96.32 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 96.27 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 96.17 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 96.11 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 96.11 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 96.0 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 95.74 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 95.57 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 95.53 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 95.5 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 95.49 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 95.47 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 95.46 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 95.39 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 95.38 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 95.31 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 95.23 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 95.22 | |
| 3ctr_A | 101 | Poly(A)-specific ribonuclease PARN; protein-RNA-co | 95.22 | |
| 1whv_A | 100 | Poly(A)-specific ribonuclease; RNA recognition mot | 95.15 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 95.14 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 95.08 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 94.97 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 94.85 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 94.77 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 94.74 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 94.24 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 94.1 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 93.8 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 93.49 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 93.45 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 93.24 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 92.96 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 92.83 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 92.25 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 91.54 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 91.38 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 91.27 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 90.21 | |
| 2lri_C | 66 | Autoimmune regulator; Zn binding protein domain, a | 88.5 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 87.51 | |
| 1ug8_A | 87 | Poly(A)-specific ribonuclease; R3H domain, poly(A) | 86.89 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 85.96 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 84.75 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 81.57 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 81.21 |
| >1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=120.66 Aligned_cols=86 Identities=14% Similarity=0.234 Sum_probs=76.1
Q ss_pred hhHHHHHHHHhC---hhHHHHHHHHHHHHHhccccCCccccceEecCCCChhhHHHHHHHHHHcCCceeecCCCCCceEE
Q 001378 765 VTELLADLYRRD---PKWVLSVEERCKFLVLGKNRGSTNALKVHVFCPMLKDKRDAVRLIAERWKLAVNPAGWEPKRFIV 841 (1090)
Q Consensus 765 yse~Ll~~~~~~---~~~~~~vE~~L~~fv~~~~~~~~~~~k~~~f~PM~~~kR~fIHeLAe~ygL~S~S~d~EP~R~Vv 841 (1090)
..++|++..++| ..|++++|+.|..||.+.. ...+.|+||++.+|.+||.||++|||.+. .|.+. |+|+
T Consensus 15 vd~~l~eaL~~~~rdR~~il~lE~~i~~Fi~d~~------~~~~ef~pmnSy~RllvHrvAe~ygL~h~-~d~~~-r~Vv 86 (124)
T 1whr_A 15 LHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNN------NQFKKFPQMTSYHRMLLHRVAAYFGMDHN-VDQTG-KAVI 86 (124)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSS------CCEEECCCCCHHHHHHHHHHHHHHTCCEE-ECSSC-SSEE
T ss_pred cCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCC------ccceECCCCCHHHHHHHHHHHHHhCcCcc-ccCCC-CEEE
Confidence 778888888754 4899999999999999874 45688999999999999999999999996 56665 9999
Q ss_pred EEeCCCCCCCccccccc
Q 001378 842 VHVTPKSKPPPRVIGVK 858 (1090)
Q Consensus 842 V~kt~~Sk~P~~lLs~~ 858 (1090)
|+||+.+++|.++|++.
T Consensus 87 V~Kt~~tr~P~~~lse~ 103 (124)
T 1whr_A 87 INKTSNTRIPEQRFSEH 103 (124)
T ss_dssp EECCTTCCCCSCCGGGT
T ss_pred EEeCCCCCCChHHHHHH
Confidence 99999999999999984
|
| >2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940} | Back alignment and structure |
|---|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
| >3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A* | Back alignment and structure |
|---|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1 | Back alignment and structure |
|---|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1090 | ||||
| d1iyma_ | 55 | g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati | 0.003 |
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: EL5 RING-H2 domain species: Rice (Oryza sativa) [TaxId: 4530]
Score = 34.8 bits (80), Expect = 0.003
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 108 MKSKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKW 145
M VEC +C ++ C FH C+ W
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMW 39
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1090 | |||
| d1whra_ | 124 | R3H domain protein KIAA1002 {Human (Homo sapiens) | 99.59 | |
| d1msza_ | 62 | SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 97.96 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 97.8 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 97.41 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 97.34 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 96.76 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 96.62 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 96.62 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 96.11 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 95.52 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 95.21 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 94.79 | |
| d1ug8a_ | 87 | Poly(A)-specific ribonuclease PARN {Mouse (Mus mus | 93.74 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 90.94 | |
| d1vfia1 | 92 | Vanadium-binding protein 2, vanabin 2 {Vanadium-ri | 90.5 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 89.5 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 89.27 | |
| d1wila_ | 89 | Hypothetical protein KIAA1045 {Human (Homo sapiens | 86.56 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 84.17 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 82.73 |
| >d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: R3H domain family: R3H domain domain: R3H domain protein KIAA1002 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.4e-15 Score=144.49 Aligned_cols=86 Identities=14% Similarity=0.234 Sum_probs=76.5
Q ss_pred hhHHHHHHHHhC---hhHHHHHHHHHHHHHhccccCCccccceEecCCCChhhHHHHHHHHHHcCCceeecCCCCCceEE
Q 001378 765 VTELLADLYRRD---PKWVLSVEERCKFLVLGKNRGSTNALKVHVFCPMLKDKRDAVRLIAERWKLAVNPAGWEPKRFIV 841 (1090)
Q Consensus 765 yse~Ll~~~~~~---~~~~~~vE~~L~~fv~~~~~~~~~~~k~~~f~PM~~~kR~fIHeLAe~ygL~S~S~d~EP~R~Vv 841 (1090)
+.++|.+++.++ ..|+.+||++|..||.+.. ..++.|+||++++|.|||+||++|||.++|.| +.|+|+
T Consensus 15 l~~fl~~~l~~~~~dr~fil~lE~~l~~Fi~d~~------~~~~~fppM~s~~R~~vH~lAe~ygL~s~s~~--~~r~v~ 86 (124)
T d1whra_ 15 LHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNN------NQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQ--TGKAVI 86 (124)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSS------CCEEECCCCCHHHHHHHHHHHHHHTCCEEECS--SCSSEE
T ss_pred HHHHHHHHHHcChHhHHHHHHHHHHHHHHHhCCc------cceeECCCCCHHHHHHHHHHHHHhCCcccccC--CCCeEE
Confidence 667888888754 4799999999999998764 45789999999999999999999999999976 459999
Q ss_pred EEeCCCCCCCccccccc
Q 001378 842 VHVTPKSKPPPRVIGVK 858 (1090)
Q Consensus 842 V~kt~~Sk~P~~lLs~~ 858 (1090)
|++|..|++|.++|++.
T Consensus 87 v~kt~~sriP~~~lse~ 103 (124)
T d1whra_ 87 INKTSNTRIPEQRFSEH 103 (124)
T ss_dssp EECCTTCCCCSCCGGGT
T ss_pred EEeCCCCCCCcHHHHHH
Confidence 99999999999999984
|
| >d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vfia1 g.84.1.1 (A:4-95) Vanadium-binding protein 2, vanabin 2 {Vanadium-rich ascidian (Ascidia sydneiensis samea) [TaxId: 79730]} | Back information, alignment and structure |
|---|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|